[ { "uniprot_canonical_ac": "A0A4X1V4T8-1", "uniprot_ac": "A0A4X1V4T8", "uniprot_id": "A0A4X1V4T8_PIG", "mass": { "chemical_mass": 33938.0, "monoisotopic_mass": 33938.0 }, "refseq": { "ac": "XP_001926603", "name": "RWD domain-containing protein 2A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926603" }, "gene_names": [ { "name": "RWDD2A", "type": "recommended", "evidence": [ { "id": "A0A4X1V4T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8" } ] }, { "name": "RWDD2A", "type": "synonym", "evidence": [ { "id": "XP_001926603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926603" } ] } ], "protein_names": [ { "name": "RWD domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1V4T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8/entry#names_and_taxonomy" } ] }, { "name": "RWD domain-containing protein 2A", "type": "synonym", "evidence": [ { "id": "XP_001926603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926603" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4T8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RWDD2A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8", "locus": { "chromosome": "1", "start_pos": 82997993, "end_pos": 83003528, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029129", "url": "https://www.ensembl.org/id/ENSSSCG00000029129" } ] } } ], "crossref": [ { "id": "A0A4X1V4T8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V4T8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23829", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23829", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd24163", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd24163", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155667", "url": "https://www.ncbi.nlm.nih.gov/gene/100155667", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155667", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155667", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RENCEEF", "url": "https://omabrowser.org/oma/group/RENCEEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V4T8", "url": "https://www.orthodb.org/?gene=A0A4X1V4T8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15955", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15955", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15955:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15955:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06544", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06544", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926603", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926603", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V4T8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V4T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSASMKECLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPKVKIDLQVTMPHSYPYAALQLFGRSSELDRQQQLLLNKGLTSHIGTFDPGELCVCAAIQWLQDNSASYFLNRKLVYEPSTQAKPVKNTFLRMWIYSHHIYQQDLRKKILDVGKRLEVTGFCMTGKPGIICVEGFKEHCEEFWHTIRYPNWKHISCKHAESMETEGNGEELRLFHSFEELLLEAHGDYGLRNDYHMNLGQFLEFLKKHKSEHVFQILFGIESKSSDS", "length": 292, "header": "tr|A0A4X1V4T8-1|A0A4X1V4T8_PIG Isoform 1 of RWD domain-containing protein OS=Sus scrofa OX=9823 GN=RWDD2A PE=4 SV=1 CANONICAL=A0A4X1V4T8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V4T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8/entry", "sequence": { "sequence": "MSASMKECLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPKVKIDLQVTMPHSYPYAALQLFGRSSELDRQQQLLLNKGLTSHIGTFDPGELCVCAAIQWLQDNSASYFLNRKLVYEPSTQAKPVKNTFLRMWIYSHHIYQQDLRKKILDVGKRLEVTGFCMTGKPGIICVEGFKEHCEEFWHTIRYPNWKHISCKHAESMETEGNGEELRLFHSFEELLLEAHGDYGLRNDYHMNLGQFLEFLKKHKSEHVFQILFGIESKSSDS", "length": 292, "header": "tr|A0A4X1V4T8-1|A0A4X1V4T8_PIG Isoform 1 of RWD domain-containing protein OS=Sus scrofa OX=9823 GN=RWDD2A PE=4 SV=1 CANONICAL=A0A4X1V4T8-1" }, "locus": { "chromosome": "1", "start_pos": 83002372, "end_pos": 83000519, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029460.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029460.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000021114.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4T8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155667", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155667", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XF08-1", "protein_name": "RWD domain containing 2A", "gene_name": "RWDD2A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAVRECLELQLLEVEMLLSMFPKKGEISLDGAAVPALQRYLRDGGGSLPPRLEYSVAVGVGEPEVKVELQVQLPHMYPHVAPQLFARSNALHRQQQLQLNTRLTSHISSLDSGELCICEAVQWLKENSLPYLENSKVSAEGVSKETATKETIQRMWIYSHHIYRQELRKKIFECAKKLNLTGFCLTGKPGVICVEGIRENCEEFWRVIRYPNWKHISCKHVETVEAEGSSDHLRLFRAFEDLQFQAHGDYGLRNDYHMDLGQFLEFLKQHQSGHIFQILFGVEGKLADK", "length": 291 }, "evidence": [ { "id": "A0A4X1V4T8", "url": "https://omabrowser.org/oma/group/A0A4X1V4T8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZAT3-1", "protein_name": "RWD domain-containing protein", "gene_name": "Rwdd2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSASIKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLDGTREALPPNIEFVITLQIEEPKVTIDLQVTMPHSYPYVALQLFGRSPELDRQQQLLLNQGLSAYLGTFDPGELCVCAAIQWLQDNSASYFLNRKLSDEPSVQPKPVKNTFLRMWIYSHHIYQQDLRKKILEVGKRLDVTGFCMTGKPGIICVEGFKDHCEEFWHTIRYPNWKHISCKHAETVETEGDGEDLRLFHSFEELLLEAHGDYGLRNDYHMNLGQFLEFLRKHKSEHVFQILFGIESKSSES", "length": 292 }, "evidence": [ { "id": "A0A4X1V4T8", "url": "https://omabrowser.org/oma/group/A0A4X1V4T8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GTC8-1", "protein_name": "RWD domain-containing protein", "gene_name": "Rwdd2a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSASIKESLQLQLLEMEMLFSMFPNQGEIKLEDVNALTNIKRYLEGTREALPHNIEFVITLQIEEPKVTIDLQVTMPHSYPSVALQLFGRSPELDRQQQLLLNQGLTAYVGTFDPGELCVCAAIQWLQDNSASYFLNRKLSDEPSTQAKPVKNTFLRMWIYSHHIYQQDLRKKILEVGKRLDVTGFCMTGKPGIICVEGFKDHCEEFWHTIRYPNWKHISCKHAESVETEGNGEDLRLFQSFEELLLEAHGDYGLRNDYHMNLGQFLEFLRKHKSEHVFQILFGIESKSSES", "length": 292 }, "evidence": [ { "id": "A0A4X1V4T8", "url": "https://omabrowser.org/oma/group/A0A4X1V4T8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9UIY3-1", "protein_name": "RWD domain-containing protein 2A", "gene_name": "RWDD2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSASVKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPKVKIDLQVTMPHSYPYVALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRKLVYEPSTQAKPVKNTFLRMWIYSHHIYQQDLRKKILDVGKRLDVTGFCMTGKPGIICVEGFKEHCEEFWHTIRYPNWKHISCKHAESVETEGNGEDLRLFHSFEELLLEAHGDYGLRNDYHMNLGQFLEFLKKHKSEHVFQILFGIESKSSDS", "length": 292 }, "evidence": [ { "id": "A0A4X1V4T8", "url": "https://omabrowser.org/oma/group/A0A4X1V4T8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V4T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4T8" }, { "id": "PS50908", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50908" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RWD", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 134, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V4U5-1", "uniprot_ac": "A0A4X1V4U5", "uniprot_id": "A0A4X1V4U5_PIG", "mass": { "chemical_mass": 39930.0, "monoisotopic_mass": 39930.0 }, "refseq": {}, "gene_names": [ { "name": "C19orf67", "type": "recommended", "evidence": [ { "id": "A0A4X1V4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5" } ] } ], "protein_names": [ { "name": "Chromosome 2 C19orf67 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1V4U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4U5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C19orf67", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5", "locus": { "chromosome": "2", "start_pos": 65104628, "end_pos": 65100755, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013769", "url": "https://www.ensembl.org/id/ENSSSCG00000013769" } ] } } ], "crossref": [ { "id": "A0A4X1V4U5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V4U5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR021748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513846", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513846", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1V4U5", "url": "https://www.orthodb.org/?gene=A0A4X1V4U5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36292:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36292:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V4U5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V4U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEQWFMGPLPAGSGETPPPDVLESGAHPCGDPSWSPSPGRPGDPPEVEPEDVQGQLPEASTSTPSPEPLAPGPRPAPPRLPLDTMFSPITEQFRYLLKKADDFQSYLLYSRDRVQKEQLAKAMPTFLQMCEPYFLYLEAAARSVPPIYGALQELIRKGLLEISQQLTLRLEQLVLMYASFGFVDLEETDPLSISCFFCGRFSISPSHEVSIFRYCAPAAYTASRFPRYLYKKMRWNLEITPEPSSRGQDSHVDYYFLCYRDTWEDTGKSPASSCPQIQKLWSIGRWVPLGPAEDDLYSWILCPQPPGDYQQLLTIGFEEPSHMLATDLLVQILMGQAGTARPLSEAGPAAWAPQGS", "length": 358, "header": "tr|A0A4X1V4U5-1|A0A4X1V4U5_PIG Isoform 1 of Chromosome 2 C19orf67 homolog OS=Sus scrofa OX=9823 GN=C19orf67 PE=4 SV=1 CANONICAL=A0A4X1V4U5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V4U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5/entry", "sequence": { "sequence": "MATEQWFMGPLPAGSGETPPPDVLESGAHPCGDPSWSPSPGRPGDPPEVEPEDVQGQLPEASTSTPSPEPLAPGPRPAPPRLPLDTMFSPITEQFRYLLKKADDFQSYLLYSRDRVQKEQLAKAMPTFLQMCEPYFLYLEAAARSVPPIYGALQELIRKGLLEISQQLTLRLEQLVLMYASFGFVDLEETDPLSISCFFCGRFSISPSHEVSIFRYCAPAAYTASRFPRYLYKKMRWNLEITPEPSSRGQDSHVDYYFLCYRDTWEDTGKSPASSCPQIQKLWSIGRWVPLGPAEDDLYSWILCPQPPGDYQQLLTIGFEEPSHMLATDLLVQILMGQAGTARPLSEAGPAAWAPQGS", "length": 358, "header": "tr|A0A4X1V4U5-1|A0A4X1V4U5_PIG Isoform 1 of Chromosome 2 C19orf67 homolog OS=Sus scrofa OX=9823 GN=C19orf67 PE=4 SV=1 CANONICAL=A0A4X1V4U5-1" }, "locus": { "chromosome": "2", "start_pos": 65103982, "end_pos": 65100954, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015044.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015044.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014639.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014639.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4U5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513846", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513846", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "in utero embryonic development", "id": "GO:0001701", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001701", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4U5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4U5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V4X4-1", "uniprot_ac": "A0A4X1V4X4", "uniprot_id": "A0A4X1V4X4_PIG", "mass": { "chemical_mass": 14720.0, "monoisotopic_mass": 14720.0 }, "refseq": {}, "gene_names": [ { "name": "LGALS1", "type": "recommended", "evidence": [ { "id": "A0A4X1V4X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ] } ], "protein_names": [ { "name": "Galectin", "type": "recommended", "evidence": [ { "id": "A0A4X1V4X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LGALS1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4", "locus": { "chromosome": "5", "start_pos": 10149068, "end_pos": 10156023, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033854", "url": "https://www.ensembl.org/id/ENSSSCG00000033854" } ] } } ], "crossref": [ { "id": "A0A4X1V4X4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V4X4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033854", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033854", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00070", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00070", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IKCMAFE", "url": "https://omabrowser.org/oma/group/IKCMAFE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346:SF97", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346:SF97", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V7G9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V7G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q797", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q797", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q797-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q797-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGAWGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGYEFSFPNRLNLEAIEYLAADGDFKIKCVAFE", "length": 135, "header": "tr|A0A4X1V4X4-1|A0A4X1V4X4_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=LGALS1 PE=1 SV=1 CANONICAL=A0A4X1V4X4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4/entry", "sequence": { "sequence": "MACGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGAWGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGYEFSFPNRLNLEAIEYLAADGDFKIKCVAFE", "length": 135, "header": "tr|A0A4X1V4X4-1|A0A4X1V4X4_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=LGALS1 PE=1 SV=1 CANONICAL=A0A4X1V4X4-1" }, "locus": { "chromosome": "5", "start_pos": 10152451, "end_pos": 10149120, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054436.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054436.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034087.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034087.1" } ] } }, { "isoform_ac": "A0A4X1V7G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7G9/entry", "sequence": { "sequence": "MLHRKNLMGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGAWGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGYEFSFPNRLNLEAIEYLAADGDFKIKCVAFE", "length": 140, "header": "tr|A0A4X1V7G9-1|A0A4X1V7G9_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS1 PE=1 SV=1 CANONICAL=A0A4X1V4X4-1" }, "locus": { "chromosome": "5", "start_pos": 10151363, "end_pos": 10149120, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053122.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053122.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035979.2" } ] } }, { "isoform_ac": "A0A5G2Q797-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q797/entry", "sequence": { "sequence": "MWEADEVSKGLAALPATASWRRRSLGGGRAGASRLGRRAVLAWIPCLDKLSSFLTAAAKVQPIGPARRTEEFQKARCLCGRLGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGAWGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGYEFSFPNRLNLEAIEYLAADGDFKIKCVAFE", "length": 214, "header": "tr|A0A5G2Q797-1|A0A5G2Q797_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS1 PE=1 SV=1 CANONICAL=A0A4X1V4X4-1" }, "locus": { "chromosome": "5", "start_pos": 10156002, "end_pos": 10149120, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088226.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088226.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059934.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059934.1" } ] } }, { "isoform_ac": "A0A5G2QD67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD67/entry", "sequence": { "sequence": "MQKEAPRVTPLASPHLAQGSPRPSLYLLSEDEGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGAWGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGYEFSFPNRLNLEAIEYLAADGDFKIKCVAFE", "length": 164, "header": "tr|A0A5G2QD67-1|A0A5G2QD67_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS1 PE=1 SV=1 CANONICAL=A0A4X1V4X4-1" }, "locus": { "chromosome": "5", "start_pos": 10153930, "end_pos": 10149120, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076029.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076029.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061541.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061541.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I4Z7-1", "protein_name": "Galectin", "gene_name": "Lgals1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MACGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDNGAWGTEHREPAFPFQPGSTVEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P07583-1", "protein_name": "Beta-galactoside-binding lectin", "gene_name": "CG-1B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSCQGPVCTNLGLKPGQRLTVKGIIAPNAKSFVMNLGKDSTHLGLHFNPRFDAHGDVNLIVCNSKKMEEWGTEQRETVFPFQKGAPIEITFSINPSDLTVHLPGHQFSFPNRLGLSVFDYFDTHGDFTLRSVSWE", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P09382-1", "protein_name": "Galectin-1", "gene_name": "LGALS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11116-1", "protein_name": "Galectin-1", "gene_name": "LGALS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACGLVASNLNLKPGECLRVRGEVAADAKSFLLNLGKDDNNLCLHFNPRFNAHGDVNTIVCNSKDAGAWGAEQRESAFPFQPGSVVEVCISFNQTDLTIKLPDGYEFKFPNRLNLEAINYLSAGGDFKIKCVAFE", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P11762-1", "protein_name": "Galectin-1", "gene_name": "Lgals1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACGLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P48538-1", "protein_name": "Galectin-1", "gene_name": "LGALS1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MACGLVASNLNLKPGECLKVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDNGAWGTEHREPAFPFQPGSTVEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKIKCVAFE", "length": 135 }, "evidence": [ { "id": "A0A4X1V4X4", "url": "https://omabrowser.org/oma/group/A0A4X1V4X4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "pmid": "" }, { "name": "laminin binding", "id": "GO:0043236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043236", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "pmid": "" }, { "name": "lactose binding", "id": "GO:0030395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030395", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V4X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V4X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V4X4" }, { "id": "PS51304", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Galectin", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 135, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V5F0-1", "uniprot_ac": "A0A4X1V5F0", "uniprot_id": "A0A4X1V5F0_PIG", "mass": { "chemical_mass": 35266.0, "monoisotopic_mass": 35266.0 }, "refseq": { "ac": "XP_003483144", "name": "solute carrier family 35 member G6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483144" }, "gene_names": [ { "name": "SLC35G6", "type": "recommended", "evidence": [ { "id": "A0A4X1V5F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0" } ] }, { "name": "SLC35G6", "type": "synonym", "evidence": [ { "id": "XP_003483144", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483144" } ] } ], "protein_names": [ { "name": "EamA domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1V5F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 35 member G6", "type": "synonym", "evidence": [ { "id": "XP_003483144", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483144" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5F0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC35G6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0", "locus": {} } ], "crossref": [ { "id": "A0A4X1V5F0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V5F0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100739676", "url": "https://www.ncbi.nlm.nih.gov/gene/100739676", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739676", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739676", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1V5F0", "url": "https://www.orthodb.org/?gene=A0A4X1V5F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22911:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22911:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483144", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483144", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V5F0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V5F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSHPYFNLPDFTQQPPSPSTPPSLPSHQRCRPSDATKGLLVALLGGGLPAGFVGPFSRMAYQASHLPSLELLICRCLFHLPIALLLKLRGDPLLGPPDVRGRACLHALLNVLSIGCAYSAVQVVPAGNAATVRKGSSTVCSALLALCLESQRLSGYDWCGLLGSTLGLIIIVGPGLGTLQEGTTGLYTALGYVLAFLGGLALSLGLLVYRSLDFPSCLPTVAFLFGLVGLVGSVPGLFVLQTPVLPNDPLSWSCVGAVGILALVSFVCVSYAVTKAHPALVCAVLHSEVVVALMLQYYVLYETVAPSDIMGAGVVLGSIAIITAQNLSCEREGQVEE", "length": 339, "header": "tr|A0A4X1V5F0-1|A0A4X1V5F0_PIG Isoform 1 of EamA domain-containing protein OS=Sus scrofa OX=9823 GN=SLC35G6 PE=3 SV=1 CANONICAL=A0A4X1V5F0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V5F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0/entry", "sequence": { "sequence": "MAGSHPYFNLPDFTQQPPSPSTPPSLPSHQRCRPSDATKGLLVALLGGGLPAGFVGPFSRMAYQASHLPSLELLICRCLFHLPIALLLKLRGDPLLGPPDVRGRACLHALLNVLSIGCAYSAVQVVPAGNAATVRKGSSTVCSALLALCLESQRLSGYDWCGLLGSTLGLIIIVGPGLGTLQEGTTGLYTALGYVLAFLGGLALSLGLLVYRSLDFPSCLPTVAFLFGLVGLVGSVPGLFVLQTPVLPNDPLSWSCVGAVGILALVSFVCVSYAVTKAHPALVCAVLHSEVVVALMLQYYVLYETVAPSDIMGAGVVLGSIAIITAQNLSCEREGQVEE", "length": 339, "header": "tr|A0A4X1V5F0-1|A0A4X1V5F0_PIG Isoform 1 of EamA domain-containing protein OS=Sus scrofa OX=9823 GN=SLC35G6 PE=3 SV=1 CANONICAL=A0A4X1V5F0-1" }, "locus": { "chromosome": "12", "start_pos": 52778409, "end_pos": 52776861, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022875.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022875.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022435.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022435.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 22, "start_aa": "Thr", "end_pos": 22, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5F0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739676", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739676", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5F0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V5F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5F0" }, { "id": "PF00892", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EamA", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 174, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V5I0-1", "uniprot_ac": "A0A4X1V5I0", "uniprot_id": "A0A4X1V5I0_PIG", "mass": { "chemical_mass": 48140.0, "monoisotopic_mass": 48140.0 }, "refseq": { "ac": "XP_001928475", "name": "lipase member M isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928475" }, "gene_names": [ { "name": "LIPM", "type": "recommended", "evidence": [ { "id": "A0A4X1V5I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ] }, { "name": "LIPM", "type": "synonym", "evidence": [ { "id": "XP_001928475", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928475" } ] } ], "protein_names": [ { "name": "Lipase", "type": "recommended", "evidence": [ { "id": "A0A4X1V5I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0/entry#names_and_taxonomy" } ] }, { "name": "lipase member M isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928475", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928475" } ] } ], "function": [ { "annotation": "Catalyzes the hydrolysis of triacylglycerols to yield free fatty acids, diacylglycerol, monoacylglycerol, and glycerol. Shows a preferential hydrolysis at the sn-3 position of triacylglycerol.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0#function" }, { "database": "UniProtKB", "id": "ARBA00045163", "url": "https://www.uniprot.org/uniprotkb/ARBA00045163#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LIPM", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0", "locus": { "chromosome": "14", "start_pos": 100748300, "end_pos": 100726480, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010444", "url": "https://www.ensembl.org/id/ENSSSCG00000010444" } ] } } ], "crossref": [ { "id": "A0A4X1V5I0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V5I0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100153843", "url": "https://www.ncbi.nlm.nih.gov/gene/100153843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153843", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153843", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHMPTKA", "url": "https://omabrowser.org/oma/group/GHMPTKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V5I0", "url": "https://www.orthodb.org/?gene=A0A4X1V5I0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11005", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11005", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928475", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "12044", "url": "https://www.rhea-db.org/rhea/12044", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "39931", "url": "https://www.rhea-db.org/rhea/39931", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40047", "url": "https://www.rhea-db.org/rhea/40047", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V5I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKILSREWIVSYRNEMWLLILVAYLFQRNVNSGHMPTIAVDPEAFMNISEIIQHKGYPCEEYEVATEDGYILSVNRIPQGLVQHKKTGPRPVVLLQHGLFGAASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTIGFIAFSTMPELAQKIKTYFALAPIATIKYAKSPGAKFLLLPDMMIKGLFGKKEFLYQTRFLRQFVIYLCGQVVLDQICSNIMLLLGGFNANNMNMSRVNVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNLEKSNQPTPVRYKVRDMTVPTAMWTGGQDWLSNPEDVRTLLSEVTHLIYHKNIPEWAHADFIWGLDAPHRMYNEIIHLMKQEETSLSQGTFGVSL", "length": 423, "header": "tr|A0A4X1V5I0-1|A0A4X1V5I0_PIG Isoform 1 of Lipase OS=Sus scrofa OX=9823 GN=LIPM PE=3 SV=1 CANONICAL=A0A4X1V5I0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V5I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0/entry", "sequence": { "sequence": "MSKILSREWIVSYRNEMWLLILVAYLFQRNVNSGHMPTIAVDPEAFMNISEIIQHKGYPCEEYEVATEDGYILSVNRIPQGLVQHKKTGPRPVVLLQHGLFGAASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTIGFIAFSTMPELAQKIKTYFALAPIATIKYAKSPGAKFLLLPDMMIKGLFGKKEFLYQTRFLRQFVIYLCGQVVLDQICSNIMLLLGGFNANNMNMSRVNVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNLEKSNQPTPVRYKVRDMTVPTAMWTGGQDWLSNPEDVRTLLSEVTHLIYHKNIPEWAHADFIWGLDAPHRMYNEIIHLMKQEETSLSQGTFGVSL", "length": 423, "header": "tr|A0A4X1V5I0-1|A0A4X1V5I0_PIG Isoform 1 of Lipase OS=Sus scrofa OX=9823 GN=LIPM PE=3 SV=1 CANONICAL=A0A4X1V5I0-1" }, "locus": { "chromosome": "14", "start_pos": 100747087, "end_pos": 100726605, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011429.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011429.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011132.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011132.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153843", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153843", "resource": "KEGG Pathway" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I960-1", "protein_name": "Lipase", "gene_name": "LOC100761952", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSEILSRAWSVSHRVEIWLLILLAYLLQRNVNSGHMPTKAADPEAFMNVSEIIKHKGYPSEEYEVATEDGYILSVNRIPQGLTQLKKEGSRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQKKIYYVGYSQGTTMGFIAFSTMPELAHKIKMYFALAPIATVKYARSPGTKFLLLPDMMIKGLFGRQEFLYQTRFFRQLFIYLCGQMILDQICSNIILLLGGFNTNNMNMSRANVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNLEKCNQPTPIRYKVRDMTVPTAMWTGGQDWLSNPDDVKTLLSEVSNLIYHKNIPEWAHVDFIWGLDAPHRVYNEIIHLMKLEPNLSQGTCKVTL", "length": 422 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4AA61-1", "protein_name": "Lipase", "gene_name": "Lipm", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEILSRAWSVSHRVEIWLLILVAYLLQRNVNSGHMPTKAADPEAFMNVSEIIKHKGYPSEEYEVATEDGYILSVNRIPRGQTQLKKEGSRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQKKIYYVGYSQGTTMGFIAFSTMPELAHKIKMYFALAPIATVKHAKSPGTKFLLLPDMMIKGLFGRQEFLYQTRFFRQLFIYLCGQMILDQICSNIILLLGGFNTNNMNMSRANVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNREKSNQPTPIRYKVRDMMVPTAMWTGGQDWLSNPDDVKTLLSEVTNLIYHKNIPEWAHVDFIWGLDAPHRVYNEIIHLMKQESSLPQGTCRVKL", "length": 422 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BA50-1", "protein_name": "Lipase", "gene_name": "LIPM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFVLRNEMWLLILVAHLFQRNVNSGHMRTTTVDPEAFMNISEIIQHKRYPCEEYEVLTEDGYILSVNRIPQGLVQLKKTGPRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWLGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTMGFIAFSTMPELAQKIKMYFALAPIATIKYAKSPGTKFLLLPDMMIKGLFGKREFLYQTRFLRQFVVYLCSQVIMDQICSNIMLLLGGFNPKNMNMSRANVYVAHTPSGTSVQNILHWSQAANSGELRAFDWGSETKNLEKGNQPTPVRYKVRDMTVPTAIWTGGQDWLSNPDDVRTLLSEVTNLIYHKNIPEWAHVDFIWGLDAPHRMYNEIIHLMKQEDTSLSQGTISVSL", "length": 415 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VYY2-1", "protein_name": "Lipase member M", "gene_name": "LIPM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLETLSRQWIVSHRMEMWLLILVAYMFQRNVNSVHMPTKAVDPEAFMNISEIIQHQGYPCEEYEVATEDGYILSVNRIPRGLVQPKKTGSRPVVLLQHGLVGGASNWISNLPNNSLGFILADAGFDVWMGNSRGNAWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTMGFIAFSTMPELAQKIKMYFALAPIATVKHAKSPGTKFLLLPDMMIKGLFGKKEFLYQTRFLRQLVIYLCGQVILDQICSNIMLLLGGFNTNNMNMSRASVYAAHTLAGTSVQNILHWSQAVNSGELRAFDWGSETKNLEKCNQPTPVRYRVRDMTVPTAMWTGGQDWLSNPEDVKMLLSEVTNLIYHKNIPEWAHVDFIWGLDAPHRMYNEIIHLMQQEETNLSQGRCEAVL", "length": 423 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q75JK5-1", "protein_name": "Lipase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLNYLISILLFLIINYSSFVSSINIFKDINIIYDHLKDDIKEIIVDATTTVNHVEYFIDIVNSNGYPCEHHSVITEDGYILGVFRIPYSYNNNQNLNNKTRQPILLQHGLLDSSITWIVNNANQSLPFILSDMGYDVWMGNNRGNTFSINHTRLDVKSREFWEFSFDDMGWYDLPSMVDYIIQVSGVDEIGYVGHSEGTMQAWISYSEIKGFDKKVPIYMGLGPVGNVSHITNVALKTMATFRIDDLFRIFGTKQFLPSPKLLRGIFISFCIDCPLCCEDVVEWLCGPHKGAFNQSRMPFVSGNEPGGTSLRNMVHFTQLVNSKQFQHYDYGVIGNLLHYGHEKPPLINVENIPPTVKIALFSGTKDELADTIDVKQLVSLLPPETILSWDIIENYAHLDFVWAIDANILVYPKILNFFNNFFNQSKS", "length": 429 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K2A6-1", "protein_name": "Lipase member M", "gene_name": "Lipm", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEILSRVWTVSHRVEIWLLILVAYLLQRNVNSGHLPTKAADPEAFMNVSEIIKHKGYPSEEYEVATEDGYILSVNRIPRGQTRLKKEGSRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQKKVYYVGYSQGTTMGFIAFSTMPELAHKIKMYFALAPIATVKYARSPGTKFLLLPDMMIKVLFGRQEFLYQTRFFRQLFIYLCGQMILDQICSNIILLLGGFNTNNMNMSRANVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNQEKCNQPTPIRYKVRDMMVPTAMWTGGQDWLSNPDDVKTLLSEVTNLIYHKNIPEWAHVDFIWGLDAPQRVYNEIIHLMKQEPNLPQGTCRVKL", "length": 422 }, "evidence": [ { "id": "A0A4X1V5I0", "url": "https://omabrowser.org/oma/group/A0A4X1V5I0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "lipase activity", "id": "GO:0016298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016298", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "pmid": "" }, { "name": "triacylglycerol lipase activity", "id": "GO:0004806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004806", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "12044", "name": "", "equation": "a triacylglycerol + H2O = a diacylglycerol + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "12044", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/12044" } ] }, { "id": "39931", "name": "", "equation": "1,2,3-tri-(9Z-octadecenoyl)-glycerol + H2O = 1,2-di-(9Z-octadecenoyl)-sn-glycerol + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "39931", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/39931" } ] }, { "id": "40047", "name": "", "equation": "1,2,3-trioctanoylglycerol + H2O = 1,2-dioctanoyl-sn-glycerol + octanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40047", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40047" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V5I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5I0" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 392, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V5P2-1", "uniprot_ac": "A0A4X1V5P2", "uniprot_id": "A0A4X1V5P2_PIG", "mass": { "chemical_mass": 13384.0, "monoisotopic_mass": 13384.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "S-phase kinase-associated protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1V5P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2/entry#names_and_taxonomy" } ] }, { "name": "Cyclin-A/CDK2-associated protein p19", "type": "synonym", "evidence": [ { "id": "A0A4X1V5P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2/entry#names_and_taxonomy" } ] }, { "name": "p19skp1", "type": "synonym", "evidence": [ { "id": "A0A4X1V5P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2", "locus": {} } ], "crossref": [ { "id": "A0A4X1V5P2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V5P2", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11165", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11165", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01466", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01466", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V5P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPNTMQSSDGEIFEAILEDVGTNDEGDDDPVPLPNVNAAVLKISFSGTLFQLVLAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEAAAQVTKRTSRPGVTPPSPQFCLSGH", "length": 124, "header": "tr|A0A4X1V5P2-1|A0A4X1V5P2_PIG Isoform 1 of S-phase kinase-associated protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A4X1V5P2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V5P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2/entry", "sequence": { "sequence": "MSPNTMQSSDGEIFEAILEDVGTNDEGDDDPVPLPNVNAAVLKISFSGTLFQLVLAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEAAAQVTKRTSRPGVTPPSPQFCLSGH", "length": 124, "header": "tr|A0A4X1V5P2-1|A0A4X1V5P2_PIG Isoform 1 of S-phase kinase-associated protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A4X1V5P2-1" }, "locus": { "chromosome": "2", "start_pos": 139948933, "end_pos": 139944409, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060981.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060981.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042971.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042971.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 113, "start_aa": "Thr", "end_pos": 113, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr113", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cullin family protein binding", "id": "GO:0097602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097602", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5P2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V5P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5P2" }, { "id": "PF01466", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01466" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SKP1 component dimerisation", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 106, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 113 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V5S4-1", "uniprot_ac": "A0A4X1V5S4", "uniprot_id": "A0A4X1V5S4_PIG", "mass": { "chemical_mass": 4158.0, "monoisotopic_mass": 4158.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1V5S4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5S4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4", "locus": {} } ], "crossref": [ { "id": "A0A4X1V5S4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V5S4", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1V5S4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V5S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPRSRERRAGAVQSTNDSSALSKSSLAARGRTPARRKS", "length": 39, "header": "tr|A0A4X1V5S4-1|A0A4X1V5S4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1V5S4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V5S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4/entry", "sequence": { "sequence": "MGPRSRERRAGAVQSTNDSSALSKSSLAARGRTPARRKS", "length": 39, "header": "tr|A0A4X1V5S4-1|A0A4X1V5S4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1V5S4-1" }, "locus": { "chromosome": "1", "start_pos": 128126667, "end_pos": 128125799, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068682.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068682.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061345.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061345.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V5S4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5S4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V615-1", "uniprot_ac": "A0A4X1V615", "uniprot_id": "A0A4X1V615_PIG", "mass": { "chemical_mass": 12450.0, "monoisotopic_mass": 12450.0 }, "refseq": { "ac": "XP_020942683", "name": "coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942683" }, "gene_names": [ { "name": "CHCHD5", "type": "recommended", "evidence": [ { "id": "A0A4X1V615", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" } ] }, { "name": "CHCHD5", "type": "synonym", "evidence": [ { "id": "XP_020942683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942683" } ] } ], "protein_names": [ { "name": "Coiled-coil-helix-coiled-coil-helix domain containing 5", "type": "synonym", "evidence": [ { "id": "A0A4X1V615", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "type": "synonym", "evidence": [ { "id": "XP_020942683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942683" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V615", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHCHD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615", "locus": { "chromosome": "3", "start_pos": 43908122, "end_pos": 43915709, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008094", "url": "https://www.ensembl.org/id/ENSSSCG00000008094" } ] } } ], "crossref": [ { "id": "A0A4X1V615", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V615", "database": "AlphaFoldDB", "categories": [] }, { "id": "100516792", "url": "https://www.ncbi.nlm.nih.gov/gene/100516792", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516792", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516792", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QKIRRDC", "url": "https://omabrowser.org/oma/group/QKIRRDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V615", "url": "https://www.orthodb.org/?gene=A0A4X1V615", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47106:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47106:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16860", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16860", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942683", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V615", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V615-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAALEVTARYCSRELEQYGQCVAAKPESWQRDCHHLKMSISQCTSSHPIIRQIRQACAEPFEAFEECLRQNEAAVSNCAEHVRRFLQCAEQVQPTHSPSTTQAQPFPAS", "length": 110, "header": "tr|A0A4X1V615-1|A0A4X1V615_PIG Isoform 1 of Coiled-coil-helix-coiled-coil-helix domain containing 5 OS=Sus scrofa OX=9823 GN=CHCHD5 PE=4 SV=1 CANONICAL=A0A4X1V615-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V615-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615/entry", "sequence": { "sequence": "MQAALEVTARYCSRELEQYGQCVAAKPESWQRDCHHLKMSISQCTSSHPIIRQIRQACAEPFEAFEECLRQNEAAVSNCAEHVRRFLQCAEQVQPTHSPSTTQAQPFPAS", "length": 110, "header": "tr|A0A4X1V615-1|A0A4X1V615_PIG Isoform 1 of Coiled-coil-helix-coiled-coil-helix domain containing 5 OS=Sus scrofa OX=9823 GN=CHCHD5 PE=4 SV=1 CANONICAL=A0A4X1V615-1" }, "locus": { "chromosome": "3", "start_pos": 43915541, "end_pos": 43910356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008867.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008867.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008642.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008642.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V615", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516792", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516792", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MH71-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "gene_name": "Chchd5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQAALEVTARYCSRELEQYGQCVAAKPESWHRDCHHLKMSIARCTSSHPIIRQIRQACAEPFEAFEECLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTGEAQPQPLPAS", "length": 112 }, "evidence": [ { "id": "A0A4X1V615", "url": "https://omabrowser.org/oma/group/A0A4X1V615/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XHB6-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain containing 5", "gene_name": "CHCHD5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "RPTPTARPRGGPGPGPALPPPPPLPSTLPTPAAPTATTRPGRAPPRRAARCRGGAAAAGGTASPTRPARPRGQEPGRPPPSSQGPPADGALPLPVGRSRACAVGNARTREAGCRRLRVRKRKEQECTCAIGELADFAHAQRGGAGTRACVERRRSDVSKGDGWGNRAGSGRAHSVSPLRQAALEITARYCRNEMEQYGRCVAASPTSWQTDCHSLRLSMSRCAATHPIVQRIREDCAEPFVAFEQCLKENQASVLNCSEHVNAFLRCAERVKLLA", "length": 275 }, "evidence": [ { "id": "A0A4X1V615", "url": "https://omabrowser.org/oma/group/A0A4X1V615/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7F5H1-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "gene_name": "chchd5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEAAMAITTKFCQKELEEYGGCVVSNPTSWQEKCQELKLRVAHCTSSHPVIRKIRSDCGSEFSVFERCLQENQSSAEACQSHLSRFLTCVETVDLSGVAHATPQPS", "length": 106 }, "evidence": [ { "id": "A0A4X1V615", "url": "https://omabrowser.org/oma/group/A0A4X1V615/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BSY4-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "gene_name": "CHCHD5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQAALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQPPRSPATVEAQPLPAS", "length": 110 }, "evidence": [ { "id": "A0A4X1V615", "url": "https://omabrowser.org/oma/group/A0A4X1V615/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQP3-1", "protein_name": "Coiled-coil-helix-coiled-coil-helix domain-containing protein 5", "gene_name": "Chchd5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQAALEVTARYCSRELDQYGQCVAAKPESWHRDCHHLKMSIARCTSSHPIIRQIRQACAEPFEAFEKCLRLNEAAVGNCAEHMRRFLQCAEQVQPPSSPTTGEAQPLPAS", "length": 110 }, "evidence": [ { "id": "A0A4X1V615", "url": "https://omabrowser.org/oma/group/A0A4X1V615/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V615", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular respiration", "id": "GO:0045333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045333", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V615", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V615", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" }, { "id": "PF06747", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06747" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CHCH", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 91, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1V615", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V615" }, { "id": "PF16860", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16860" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IMS import disulfide relay-system CHCH-CHCH-like Cx9C", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 49, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V711-1", "uniprot_ac": "A0A4X1V711", "uniprot_id": "A0A4X1V711_PIG", "mass": { "chemical_mass": 34658.0, "monoisotopic_mass": 34658.0 }, "refseq": { "ac": "NP_001245363", "name": "calcium homeostasis modulator protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363" }, "gene_names": [ { "name": "CALHM6", "type": "recommended", "evidence": [ { "id": "A0A4X1V711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ] }, { "name": "CALHM6", "type": "synonym", "evidence": [ { "id": "NP_001245363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363" } ] }, { "name": "FAM26F", "type": "synonym", "evidence": [ { "id": "NP_001245363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363" } ] } ], "protein_names": [ { "name": "Calcium homeostasis modulator family member 6", "type": "synonym", "evidence": [ { "id": "A0A4X1V711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711/entry#names_and_taxonomy" } ] }, { "name": "calcium homeostasis modulator protein 6", "type": "synonym", "evidence": [ { "id": "NP_001245363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363" } ] }, { "name": "family with sequence similarity 26 member F", "type": "synonym", "evidence": [ { "id": "NP_001245363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CALHM6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711", "locus": { "chromosome": "1", "start_pos": 82087889, "end_pos": 82085714, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036064", "url": "https://www.ensembl.org/id/ENSSSCG00000036064" } ] } } ], "crossref": [ { "id": "A0A4X1V711", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V711", "database": "AlphaFoldDB", "categories": [] }, { "id": "100158219", "url": "https://www.ncbi.nlm.nih.gov/gene/100158219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158219", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158219", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFWKIYS", "url": "https://omabrowser.org/oma/group/KFWKIYS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V711", "url": "https://www.orthodb.org/?gene=A0A4X1V711", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32261", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32261", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32261:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32261:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001245363", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001245363", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V711-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKFRTVLDLHLKHHSALGYGLVSLLTAGGERIFSTAVFQCPCNAAWNLPYGLVFLLVPALALFLLGYVLNARTWRLLTGCCARPGCGGGLRTFVVCAQLSAAAAVAPLTWVAVALLGGTFYECAASGSAFQARRLCPGRDSRCEVQMPLVPCGQAQVPEVQELHKELKAQSQVLGWVLIAVVMIVLLLCTSVTRCLSPVSFLQLKFWKIYLEQEQQILKNQATEHAAELAKENIRCFFESSHPKECNTPSIKDWQQISSLYTYNPKEQYYSMLHKYVNRKEKNQSIRSSQGDAMVPIFGFVDSTGMNTTPSL", "length": 313, "header": "tr|A0A4X1V711-1|A0A4X1V711_PIG Isoform 1 of Calcium homeostasis modulator family member 6 OS=Sus scrofa OX=9823 GN=CALHM6 PE=3 SV=1 CANONICAL=A0A4X1V711-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V711-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711/entry", "sequence": { "sequence": "MEKFRTVLDLHLKHHSALGYGLVSLLTAGGERIFSTAVFQCPCNAAWNLPYGLVFLLVPALALFLLGYVLNARTWRLLTGCCARPGCGGGLRTFVVCAQLSAAAAVAPLTWVAVALLGGTFYECAASGSAFQARRLCPGRDSRCEVQMPLVPCGQAQVPEVQELHKELKAQSQVLGWVLIAVVMIVLLLCTSVTRCLSPVSFLQLKFWKIYLEQEQQILKNQATEHAAELAKENIRCFFESSHPKECNTPSIKDWQQISSLYTYNPKEQYYSMLHKYVNRKEKNQSIRSSQGDAMVPIFGFVDSTGMNTTPSL", "length": 313, "header": "tr|A0A4X1V711-1|A0A4X1V711_PIG Isoform 1 of Calcium homeostasis modulator family member 6 OS=Sus scrofa OX=9823 GN=CALHM6 PE=3 SV=1 CANONICAL=A0A4X1V711-1" }, "locus": { "chromosome": "1", "start_pos": 82087829, "end_pos": 82086205, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054831.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054831.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042630.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042630.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158219", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158219", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C3Z9-1", "protein_name": "Calcium homeostasis modulator family member 6", "gene_name": "FAM26F", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEKLHTVVNFCIRYQKTLGYSIVSLLTIASEQIFSSVAFRCPCNSWNTLYGCVFLLVPALLLFLLGYMVNARTWLLLTGSCPQEKKHCCGFGEKGCFYLKVLASVTASTLVAPLTWIAVALLSASFYECAASGSSLIRHRVCRDIDKLTACRELLEKIPCDEKVVGQLLNENSASKVGLVSFRAQSQILGWLLIVTIIIVALISTCISRCFSPVSYLQLKFWKIYLEKEREHFETKAKEHAAQLAERNINCFFEATNPPPFQTPSNDNWQKISFPYAFSKNNQYYSMIHKYANASRGNISTVSEGDQICSALEFVDEAHTSEQAF", "length": 325 }, "evidence": [ { "id": "A0A4X1V711", "url": "https://omabrowser.org/oma/group/A0A4X1V711/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q561R8-1", "protein_name": "Calcium homeostasis modulator protein 6", "gene_name": "Calhm6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKFKAVLDLQIKHRSALGYGLVTLLTAGGEKIFSTVVFQCPCTATLNLTYGLVFLLVPALALFLLGYALSARTWRLLTGCCSRSASTRSSSGLRSTLVCAQVSAVAALAPLTWVAVALLGGSFYQCAVSGSTRLASYLCKDRNHSCIAKLPQVPCNKQEAEMQEILSQLKAQSQVLGWVLIAAVIFLLLVFKCVSRCFSPVSYLQLKFWEIYLEKEKQILQSQAAEHATQLARENIRSFFECSKPKECNTPSRKDWQQISALYTFNSKNQFYSMLHKYVSRKEVSSSLHSVEGDVVVPVLGFVDDAAMANTHGV", "length": 315 }, "evidence": [ { "id": "A0A4X1V711", "url": "https://omabrowser.org/oma/group/A0A4X1V711/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5R3K3-1", "protein_name": "Calcium homeostasis modulator protein 6", "gene_name": "CALHM6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKFRAVLDLHVKHHSALGYGLVTLLTAGGERIFSAVAFQCPCSAAWNLPYGLVFLLVPALALFLLGYVLSARTWRLLTGCCSSARASCGSALRGSLVCTQISAAAALAPLTWVAVALLGGAFYECAATGSAAFAQRLCLGRNRSCAAELPLVPCNQAKASDVQDLLKDLKAQSQVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCFFEGSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVNRKEKTHSIRSTEGDTVIPVLGFVDSSGINSTPEL", "length": 315 }, "evidence": [ { "id": "A0A4X1V711", "url": "https://omabrowser.org/oma/group/A0A4X1V711/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C9E8-1", "protein_name": "Calcium homeostasis modulator protein 6", "gene_name": "Calhm6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKFKAVLDLQRKHRNALGYSLVTLLTAGGEKIFSSVVFQCPCTATWNLPYGLVFLLVPALALFLLGYALSARTWRLLTGCCSRSARFSSGLRSAFVCAQLSMTAAFAPLTWVAVALLEGSFYQCAVSGSARLAPYLCKGRDPNCNATLPQAPCNKQKVEMQEILSQLKAQSQVFGWILIAAVIILLLLVKSVTRCFSPVSYLQLKFWEIYWEKEKQILQNQAAENATQLAEENVRCFFECSKPKECNTPSSKDWQEISALYTFNPKNQFYSMLHKYVSREEMSGSVRSVEGDAVIPALGFVDDMSMTNTHEL", "length": 313 }, "evidence": [ { "id": "A0A4X1V711", "url": "https://omabrowser.org/oma/group/A0A4X1V711/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" }, { "name": "immunological synapse", "id": "GO:0001772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001772", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "monoatomic cation channel activity", "id": "GO:0005261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005261", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" }, { "name": "voltage-gated channel activity", "id": "GO:0022832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022832", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ATP export", "id": "GO:1904669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904669", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" }, { "name": "regulation of natural killer cell cytokine production", "id": "GO:0002727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002727", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V711", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V711" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 284, "end_pos": 286 }, { "start_pos": 308, "end_pos": 310 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V776-1", "uniprot_ac": "A0A4X1V776", "uniprot_id": "A0A4X1V776_PIG", "mass": { "chemical_mass": 26621.0, "monoisotopic_mass": 26621.0 }, "refseq": {}, "gene_names": [ { "name": "CYB5D1", "type": "recommended", "evidence": [ { "id": "A0A4X1V776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ] } ], "protein_names": [ { "name": "Cytochrome b5 domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1V776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Radial spoke stalk protein that binds heme under oxidizing conditions. Required for the coordinated beating of multiple cilia maybe by functioning in a redox signaling pathway.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776#function" }, { "database": "UniProtKB", "id": "ARBA00046139", "url": "https://www.uniprot.org/uniprotkb/ARBA00046139#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYB5D1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776", "locus": { "chromosome": "12", "start_pos": 53117122, "end_pos": 53112230, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059632", "url": "https://www.ensembl.org/id/ENSSSCG00000059632" } ] } } ], "crossref": [ { "id": "A0A4X1V776", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V776", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036400", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036400", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21281", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21281", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21281:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21281:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V776-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRRGLVAGPDFEYFQRRYFTPAEVAQHNQLEDLWVSYLGNVYDLTPLAQEYKGDLLLKPIVEVAGQDISHWFDPDTGDIRKHIDPLTGCLRYRTPWGRFLHVPPQLPRSDWANDFGKPWWQGSRYEVGRLSAKTRTIRIINTLTSQEHTLEVGALESLWEILHRYLPYNAHAASYTWKYEGKNLNMDDTLEDNGIWDEEEELDSLDVDSTHHTPALLLYFNDDLTEL", "length": 228, "header": "tr|A0A4X1V776-1|A0A4X1V776_PIG Isoform 1 of Cytochrome b5 domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CYB5D1 PE=3 SV=1 CANONICAL=A0A4X1V776-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V776-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776/entry", "sequence": { "sequence": "MLRRGLVAGPDFEYFQRRYFTPAEVAQHNQLEDLWVSYLGNVYDLTPLAQEYKGDLLLKPIVEVAGQDISHWFDPDTGDIRKHIDPLTGCLRYRTPWGRFLHVPPQLPRSDWANDFGKPWWQGSRYEVGRLSAKTRTIRIINTLTSQEHTLEVGALESLWEILHRYLPYNAHAASYTWKYEGKNLNMDDTLEDNGIWDEEEELDSLDVDSTHHTPALLLYFNDDLTEL", "length": 228, "header": "tr|A0A4X1V776-1|A0A4X1V776_PIG Isoform 1 of Cytochrome b5 domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CYB5D1 PE=3 SV=1 CANONICAL=A0A4X1V776-1" }, "locus": { "chromosome": "12", "start_pos": 53114190, "end_pos": 53112661, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019543.3", "url": "https://www.ensembl.org/id/ENSSSCT00000019543.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019025.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019025.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cilium movement", "id": "GO:0003341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003341", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V776", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V776" }, { "id": "PS50255", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50255" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cytochrome b5 heme-binding", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 132, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V7T1-1", "uniprot_ac": "A0A4X1V7T1", "uniprot_id": "A0A4X1V7T1_PIG", "mass": { "chemical_mass": 27981.0, "monoisotopic_mass": 27981.0 }, "refseq": { "ac": "XP_001928555", "name": "RWD domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928555" }, "gene_names": [ { "name": "RWDD1", "type": "recommended", "evidence": [ { "id": "A0A4X1V7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" } ] }, { "name": "RWDD1", "type": "synonym", "evidence": [ { "id": "XP_001928555", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928555" } ] } ], "protein_names": [ { "name": "RWD domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1V7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1/entry#names_and_taxonomy" } ] }, { "name": "RWD domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928555", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928555" } ] } ], "function": [ { "annotation": "Protects DRG2 from proteolytic degradation. May function as a coactivator of the AR/androgen receptor transcription factor during development.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1#function" }, { "database": "UniProtKB", "id": "ARBA00094243", "url": "https://www.uniprot.org/uniprotkb/ARBA00094243#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RWDD1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1", "locus": {} } ], "crossref": [ { "id": "A0A4X1V7T1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V7T1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23816", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23816", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153343", "url": "https://www.ncbi.nlm.nih.gov/gene/100153343", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153343", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153343", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QWDEHKK", "url": "https://omabrowser.org/oma/group/QWDEHKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V7T1", "url": "https://www.orthodb.org/?gene=A0A4X1V7T1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16543", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16543", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9629569", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928555", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928555", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V7T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQLNLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGRQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDLTD", "length": 243, "header": "tr|A0A4X1V7T1-1|A0A4X1V7T1_PIG Isoform 1 of RWD domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RWDD1 PE=1 SV=1 CANONICAL=A0A4X1V7T1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V7T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1/entry", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQLNLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGRQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDLTD", "length": 243, "header": "tr|A0A4X1V7T1-1|A0A4X1V7T1_PIG Isoform 1 of RWD domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RWDD1 PE=1 SV=1 CANONICAL=A0A4X1V7T1-1" }, "locus": { "chromosome": "1", "start_pos": 82180134, "end_pos": 82161909, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004911.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004911.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004795.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004795.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153343", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153343", "resource": "KEGG Pathway" }, { "id": "R-SSC-9629569", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "resource": "Reactome", "description": "Protein hydroxylation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1Q5G7-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "rwdd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDYGEEQRNELEAIESIYPDSFTVLSDAPTSFTITVTSDTGENEETLELTLKFTYVEKYPDEPPLWEIFSQENLEDSDAEEILTLLKQQAEENLGMVMIFTLVTAVQEKLNEIIDQIKSRREEEKQRKQKEAEEAEKRAFQGTVVTIETFLSWKAKFEAEMIELKKKRQKEEEQSGKKKLTGKQLFETDHNLDTSDIQFLEDGGNSVEVDESLFQEMDDLDLDEDDPDFDPLDLGSDED", "length": 240 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q03768-1", "protein_name": "Protein GIR2", "gene_name": "GIR2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDYKEEQKQELEVLESIYPDELRIINDEYPKIKFEVAIKLELDTGDSTSVLTKEHTIIAEFKLPENYPDEPCLISLEAQEVALNDNEEDNEEDEDEVEYDDHGNKVLKKFENLPDLISFKGYLPELTVQLESQIETDMLLGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEWRSKFRQELKLDERDQVRRMKAHHGKLTGKQMFEQGVVGTGDEYMEEDDASVDDVAKGLAKTEIANQ", "length": 265 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q556K0-1", "protein_name": "RWD domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSEEKDMEVEALSAIYMDHFNSIDSDHVQITLLPNPGGDEPNFVAIILDIIFSVDYPNSIPKIDLIPHLGLEKEDILELQGKVIQEAENNIGMSMIFILCGLIKEWVDENNIDPDLEESEQSSSSEAEDDERPFEGTPVTEEAFLAWRKKFIEETKPFKKEKQLNKLTGRQLFEQDTSLNASDSRLMEEGEEASNITVASIKPKLEEVAAQVDWSLFADEEIKDVDYEEEE", "length": 231 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99ND9-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "Rwdd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNPVAPGSDSSD", "length": 243 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9C8I1-1", "protein_name": "Ubiquitin-conjugating enzyme family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTEYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQDDELEELAIPPVQLALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSAKDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKLMPESALTAPKEKKLTGRQWFESGRGRGTVVIADEEDEEEDEEDIDFEDEDFEDDEEDMLEHYLAEKSDSSAPPTRT", "length": 252 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK7-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "Rwdd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDGEDDPDYNPVAPGSDSSD", "length": 243 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H446-1", "protein_name": "RWD domain-containing protein 1", "gene_name": "RWDD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEEQAGKNKLSGKQLFETDHNLDTSDIQFLEDAGNNVEVDESLFQEMDDLELEDDEDDPDYNPADPESDSAD", "length": 243 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VCB9-1", "protein_name": "RWD domain-containing protein", "gene_name": "Dmel\\CG5515", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRNYKEDQTNEVEALDSIYCGDMEILATEPHHKFQIPIATEEYSSEEPEKGLACKLVFTFTATYPDGAPVVEIEEPENFEDMFETRLLEHLQKTIEENLGMEMIFSLVSSAQEWLNERWDEHKFHQEELREQKLREIEEEERKKFEGTRVTVESFLKWKLEFEESTGIAAKREKNNVSKKQTGRELFMCDNTLNDSDIKFLLEAGENIENVKIDETLFQDIGELDLDDDDDEDWVPGADDDDD", "length": 244 }, "evidence": [ { "id": "A0A4X1V7T1", "url": "https://omabrowser.org/oma/group/A0A4X1V7T1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7T1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V7T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7T1" }, { "id": "PS50908", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50908" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RWD", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 114, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VD86-1", "uniprot_ac": "A0A4X1VD86", "uniprot_id": "A0A4X1VD86_PIG", "mass": { "chemical_mass": 20127.0, "monoisotopic_mass": 20127.0 }, "refseq": {}, "gene_names": [ { "name": "SAPCD1", "type": "recommended", "evidence": [ { "id": "A0A4X1VD86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86" } ] } ], "protein_names": [ { "name": "Suppressor APC domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VD86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD86", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAPCD1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86", "locus": { "chromosome": "7", "start_pos": 23874967, "end_pos": 23873120, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000061053", "url": "https://www.ensembl.org/id/ENSSSCG00000061053" } ] } } ], "crossref": [ { "id": "A0A4X1VD86", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VD86", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR026828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RQDALWQ", "url": "https://omabrowser.org/oma/group/RQDALWQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14907", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14907", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14907:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14907:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V9N1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V9N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V9N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V9N1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VD86", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VD86-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSRGPGRLPLVQVPYTVLLLPLETSRQEPGARSFFLWLQRMQALEREQDALWQGLELLEHSQAWYEGRLREAQQQQLHLGALGENFLTDLQSEAGGPQLAQIQKVNICLQNLIQGKFSPHPLNKASSCDTQDWEETPRKQNLWRQQEGSRQQKEVIQPKGAMAQPGCPSGQRGPTHV", "length": 178, "header": "tr|A0A4X1VD86-1|A0A4X1VD86_PIG Isoform 1 of Suppressor APC domain containing 1 OS=Sus scrofa OX=9823 GN=SAPCD1 PE=4 SV=1 CANONICAL=A0A4X1VD86-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V9N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V9N1/entry", "sequence": { "sequence": "MGSRGPGRLPLVQVPYTVLLLPLETSRQEPGARSFFLWLQRMQALEREQDALWQGLELLEHSQAWYEGRLREAQQQQLHLGALEFSNRFTVRGWWPPVSPDSKGEHLFAESDSGEVLATSLEQS", "length": 124, "header": "tr|A0A4X1V9N1-1|A0A4X1VD86_PIG Computationally mapped isoform of Suppressor APC domain containing 1 OS=Sus scrofa OX=9823 GN=SAPCD1 PE=4 SV=2 CANONICAL=A0A4X1VD86-1" }, "locus": { "chromosome": "7", "start_pos": 23874486, "end_pos": 23873287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098744.2", "url": "https://www.ensembl.org/id/ENSSSCT00000098744.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074797.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074797.2" } ] } }, { "isoform_ac": "A0A4X1VD86-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD86/entry", "sequence": { "sequence": "MGSRGPGRLPLVQVPYTVLLLPLETSRQEPGARSFFLWLQRMQALEREQDALWQGLELLEHSQAWYEGRLREAQQQQLHLGALGENFLTDLQSEAGGPQLAQIQKVNICLQNLIQGKFSPHPLNKASSCDTQDWEETPRKQNLWRQQEGSRQQKEVIQPKGAMAQPGCPSGQRGPTHV", "length": 178, "header": "tr|A0A4X1VD86-1|A0A4X1VD86_PIG Isoform 1 of Suppressor APC domain containing 1 OS=Sus scrofa OX=9823 GN=SAPCD1 PE=4 SV=1 CANONICAL=A0A4X1VD86-1" }, "locus": { "chromosome": "7", "start_pos": 23874730, "end_pos": 23873287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000101948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080494.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080494.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V9N1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V9N1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0KVV2-1", "protein_name": "Suppressor APC domain containing 1", "gene_name": "Sapcd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESPGPGELPLVQAPYTVLLLPLGTSHQDPGAQNFFLWLQMMQALEREQDALWQGLELLEHSQAWFADRLRETQQRQLQLGALDFGEGACGVRLIRPCPYPLEKLIPVQPRARRECQGRELVAAMGKLRGVEPWLTNPQGEWRVPGWFSLFQELSKQQKGVSHRTGEVISQAPPPGAKGPTLV", "length": 183 }, "evidence": [ { "id": "A0A4X1VD86", "url": "https://omabrowser.org/oma/group/A0A4X1VD86/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SSQ6-1", "protein_name": "Suppressor APC domain-containing protein 1", "gene_name": "SAPCD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSQGSGGVPLVQAPYTVLLLPLGTSRQDPGAQSFFLWLRRMQALEREQDALWQGLELLQHGQAWFEDHLREAQRQQLHLGALGENFLTDLHSEPGRPPLAQIQKVNICLQNLIHEKELSRQQKGVTQPKEEMAQRGCTKGPRGPTRV", "length": 148 }, "evidence": [ { "id": "A0A4X1VD86", "url": "https://omabrowser.org/oma/group/A0A4X1VD86/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CY86-1", "protein_name": "Suppressor APC domain-containing protein 1", "gene_name": "Sapcd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESPGPGGPPLVQAPYTVLLLPLGTSRQDPGAQNFFLWLQMMQALEREQDALWQGLELLEHGQAWFADRLRETQQRQLQLGALGEDFLMDLHSETDAPLLTRIQKVNACLHSLIHKELSKHRKGVTQSTGEVVSQAPPGPKGPTLV", "length": 146 }, "evidence": [ { "id": "A0A4X1VD86", "url": "https://omabrowser.org/oma/group/A0A4X1VD86/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VA00-1", "uniprot_ac": "A0A4X1VA00", "uniprot_id": "A0A4X1VA00_PIG", "mass": { "chemical_mass": 43553.0, "monoisotopic_mass": 43553.0 }, "refseq": { "ac": "XP_003122640", "name": "integral membrane protein GPR137 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122640" }, "gene_names": [ { "name": "GPR137", "type": "recommended", "evidence": [ { "id": "A0A4X1VA00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ] }, { "name": "GPR137", "type": "synonym", "evidence": [ { "id": "XP_003122640", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122640" } ] } ], "protein_names": [ { "name": "G protein-coupled receptor 137", "type": "synonym", "evidence": [ { "id": "A0A4X1VA00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00/entry#names_and_taxonomy" } ] }, { "name": "integral membrane protein GPR137 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003122640", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122640" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR137", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00", "locus": { "chromosome": "2", "start_pos": 7826456, "end_pos": 7830969, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013032", "url": "https://www.ensembl.org/id/ENSSSCG00000013032" } ] } } ], "crossref": [ { "id": "A0A4X1VA00", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VA00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013032", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013032", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21474", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21474", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524971", "url": "https://www.ncbi.nlm.nih.gov/gene/100524971", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524971", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524971", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YFFDHPG", "url": "https://omabrowser.org/oma/group/YFFDHPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VA00", "url": "https://www.orthodb.org/?gene=A0A4X1VA00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15146:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15146:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122640", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122640", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZMU6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA00-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TK90", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TK90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TK90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TK90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD26", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD26-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQN8", "url": "https://www.uniprot.org/uniprotkb/F1RQN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RQN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 395, "header": "tr|A0A4X1VA00-1|A0A4X1VA00_PIG Isoform 1 of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMU6/entry", "sequence": { "sequence": "MGRPAYHPLLLLLPRYTSSQPPGAPALLASLLLPCLPAVLHTDAYESLLCPGGVQGQGEASARDEPRLGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 252, "header": "tr|A0A286ZMU6-1|A0A286ZMU6_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7829143, "end_pos": 7826757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042544.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042544.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032890.1" } ] } }, { "isoform_ac": "A0A4X1VA00-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 395, "header": "tr|A0A4X1VA00-1|A0A4X1VA00_PIG Isoform 1 of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7829346, "end_pos": 7826757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059652.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059652.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042108.1" } ] } }, { "isoform_ac": "A0A4X1VA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA10/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 345, "header": "tr|A0A4X1VA10-1|A0A4X1VA10_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7829346, "end_pos": 7826757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036419.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036419.2" } ] } }, { "isoform_ac": "A0A4X1VA20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA20/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLHVRQPRLRQLVRCHRAG", "length": 321, "header": "tr|A0A4X1VA20-1|A0A4X1VA20_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7829346, "end_pos": 7826863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067627.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067627.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063600.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063600.1" } ] } }, { "isoform_ac": "A0A8D0TK90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TK90/entry", "sequence": { "sequence": "MAGAPVRGDHRTGGALRLASGWPGGVQGQGEASARDEPRLGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 224, "header": "tr|A0A8D0TK90-1|A0A8D0TK90_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7830560, "end_pos": 7826757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039862.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039862.1" } ] } }, { "isoform_ac": "A0A8W4FD26-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD26/entry", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTRFWDQAATTTVSTPPHRRDPPPSPQHPDPSPSPSRPLCRVHPPLLAQDSRGCGCLFPRPAPCYSCRSELVLP", "length": 414, "header": "tr|A0A8W4FD26-1|A0A8W4FD26_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=1 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7829346, "end_pos": 7826590, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096436.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096436.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077169.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077169.1" } ] } }, { "isoform_ac": "F1RQN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RQN8/entry", "sequence": { "sequence": "MAGAPVRGDHRTASPSISVSWIQASLPDMESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSGSWYGAIGREPGWCGGSQTRTTPLLFSQVLGPGSHHHSLYSTPQT", "length": 423, "header": "tr|F1RQN8-1|F1RQN8_PIG Computationally mapped isoform of G protein-coupled receptor 137 OS=Sus scrofa OX=9823 GN=GPR137 PE=4 SV=2 CANONICAL=A0A4X1VA00-1" }, "locus": { "chromosome": "2", "start_pos": 7830560, "end_pos": 7826757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014245.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014245.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013859.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013859.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524971", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524971", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QCH5-1", "protein_name": "Integral membrane protein GPR137 isoform X1", "gene_name": "Gpr137", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTSRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRRAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLTTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGGHHHSLYSTPQT", "length": 396 }, "evidence": [ { "id": "A0A4X1VA00", "url": "https://omabrowser.org/oma/group/A0A4X1VA00/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17QQ5-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "GPR137", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANHLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAMLSRRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAHCEDEGCSWEHSRGESTSMSGSLGSSSWYGTIGREPGWCGGSQTRTTPLLFSQVLGPGGHHHSLYSTPQT", "length": 395 }, "evidence": [ { "id": "A0A4X1VA00", "url": "https://omabrowser.org/oma/group/A0A4X1VA00/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80ZU9-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "Gpr137", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPTVTLGLTAAYTALYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFVQVVFKAKAKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSRQRQAQPWVLLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAIGGAMVLLYASRACYNLAALALAPRSRLDAFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSRILNGQVFGSRSYFFDRAGHCEDEGCSWEHSRSESTSMSGSLGSGSWYGAIGREPGWGGASQTRTTPLLFSQVPGPGSHHHSLYSTPQT", "length": 396 }, "evidence": [ { "id": "A0A4X1VA00", "url": "https://omabrowser.org/oma/group/A0A4X1VA00/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96N19-1", "protein_name": "Integral membrane protein GPR137", "gene_name": "GPR137", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESNLSGLVPAAGLVPALPPAVTLGLTAAYTTLYALLFFSVYAQLWLVLLYGHKRLSYQTVFLALCLLWAALRTTLFSFYFRDTPRANRLGPLPFWLLYCCPVCLQFFTLTLMNLYFAQVVFKAKVKRRPEMSRGLLAVRGAFVGASLLFLLVNVLCAVLSHRRRAQPWALLLVRVLVSDSLFVICALSLAACLCLVARRAPSTSIYLEAKGTSVCQAAAMGGAMVLLYASRACYNLTALALAPQSRLDTFDYDWYNVSDQADLVNDLGNKGYLVFGLILFVWELLPTTLLVGFFRVHRPPQDLSTSHILNGQVFASRSYFFDRAGHCEDEGCSWEHSRGESTRCQDQAATTTVSTPPHRRDPPPSPTEYPGPSPPHPRPLCQVCLPLLAQDPGGRGYPLLWPAPCCSCHSELVPSP", "length": 417 }, "evidence": [ { "id": "A0A4X1VA00", "url": "https://omabrowser.org/oma/group/A0A4X1VA00/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "pmid": "" }, { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "pmid": "" }, { "name": "negative regulation of osteoclast differentiation", "id": "GO:0045671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045671", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "pmid": "" }, { "name": "negative regulation of bone resorption", "id": "GO:0045779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045779", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 }, { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VA51-1", "uniprot_ac": "A0A4X1VA51", "uniprot_id": "A0A4X1VA51_PIG", "mass": { "chemical_mass": 9125.0, "monoisotopic_mass": 9125.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Stromal interaction molecule 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VA51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51", "locus": {} } ], "crossref": [ { "id": "A0A4X1VA51", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VA51", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR037608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15136:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15136:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VA51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA51-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIFSPASKVYNGILEKSCSMNQLSSGIPVPKPRHTSCSSAGNDSKPGQEAPSVARISSIPHDLCHNGEKSKKPSKIKSLFKKKSK", "length": 85, "header": "tr|A0A4X1VA51-1|A0A4X1VA51_PIG Isoform 1 of Stromal interaction molecule 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VA51-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VA51-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51/entry", "sequence": { "sequence": "MIFSPASKVYNGILEKSCSMNQLSSGIPVPKPRHTSCSSAGNDSKPGQEAPSVARISSIPHDLCHNGEKSKKPSKIKSLFKKKSK", "length": 85, "header": "tr|A0A4X1VA51-1|A0A4X1VA51_PIG Isoform 1 of Stromal interaction molecule 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VA51-1" }, "locus": { "chromosome": "8", "start_pos": 20608092, "end_pos": 20607838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057629.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057629.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042404.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042404.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA51" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VA68-1", "uniprot_ac": "A0A4X1VA68", "uniprot_id": "A0A4X1VA68_PIG", "mass": { "chemical_mass": 28675.0, "monoisotopic_mass": 28675.0 }, "refseq": {}, "gene_names": [ { "name": "SCARA5", "type": "recommended", "evidence": [ { "id": "A0A4X1VA68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68" } ] } ], "protein_names": [ { "name": "Scavenger receptor class A member 5", "type": "synonym", "evidence": [ { "id": "A0A4X1VA68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCARA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68", "locus": {} } ], "crossref": [ { "id": "A0A4X1VA68", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VA68", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48071", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48071", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48071:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48071:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VA68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA68-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENKAMYLHTVSDRDSGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVLGLYLLVFLILVGIFILAGPPGPKGDQGDEGKEGQPGIPGLPGLRGLPGERGTSGPPGPKGDEGKLGATGPMGMRGFKGDRGPKGEKGEKGDRTGDTSIVEAVMVRLVNGTGPHQGRVEVYHDRRWGTVCDDGWDKKDGDVVCRMLGFPSAEDVHRTAHFGQGTGRIWMDDVACKGTEETIFRCSFSKWGVTNCGHAEDAGVTCKRH", "length": 269, "header": "tr|A0A4X1VA68-1|A0A4X1VA68_PIG Isoform 1 of Scavenger receptor class A member 5 OS=Sus scrofa OX=9823 GN=SCARA5 PE=4 SV=1 CANONICAL=A0A4X1VA68-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VA68-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68/entry", "sequence": { "sequence": "MENKAMYLHTVSDRDSGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVLGLYLLVFLILVGIFILAGPPGPKGDQGDEGKEGQPGIPGLPGLRGLPGERGTSGPPGPKGDEGKLGATGPMGMRGFKGDRGPKGEKGEKGDRTGDTSIVEAVMVRLVNGTGPHQGRVEVYHDRRWGTVCDDGWDKKDGDVVCRMLGFPSAEDVHRTAHFGQGTGRIWMDDVACKGTEETIFRCSFSKWGVTNCGHAEDAGVTCKRH", "length": 269, "header": "tr|A0A4X1VA68-1|A0A4X1VA68_PIG Isoform 1 of Scavenger receptor class A member 5 OS=Sus scrofa OX=9823 GN=SCARA5 PE=4 SV=1 CANONICAL=A0A4X1VA68-1" }, "locus": { "chromosome": "14", "start_pos": 11742938, "end_pos": 11617598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010605.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010605.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010329.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010329.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VA68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA68" }, { "id": "PS50287", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRCR", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 267, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 171, "end_pos": 173 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VA90-1", "uniprot_ac": "A0A4X1VA90", "uniprot_id": "A0A4X1VA90_PIG", "mass": { "chemical_mass": 9557.0, "monoisotopic_mass": 9557.0 }, "refseq": {}, "gene_names": [ { "name": "TXN", "type": "recommended", "evidence": [ { "id": "A0A4X1VA90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ] } ], "protein_names": [ { "name": "Thioredoxin", "type": "synonym", "evidence": [ { "id": "A0A4X1VA90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Plays a role in the reversible S-nitrosylation of cysteine residues in target proteins, and thereby contributes to the response to intracellular nitric oxide. Nitrosylates the active site Cys of CASP3 in response to nitric oxide (NO), and thereby inhibits caspase-3 activity. Induces the FOS/JUN AP-1 DNA binding activity in ionizing radiation (IR) cells through its oxidation/reduction status and stimulates AP-1 transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1FY56", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FY56#function" }, { "database": "UniProtKB", "id": "ARBA00059464", "url": "https://www.uniprot.org/uniprotkb/ARBA00059464#function" }, { "database": "UniProtKB", "id": "A0A5G2QTF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF5#function" }, { "database": "UniProtKB", "id": "A0A5G2Q9S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXN", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90", "locus": {} } ], "crossref": [ { "id": "A0A4X1VA90", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VA90", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005453", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005453", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02947", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02947", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397581", "url": "https://www.ncbi.nlm.nih.gov/gene/397581", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q9S8", "url": "https://www.orthodb.org/?gene=A0A5G2Q9S8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3299685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-499943", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676934", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676934", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-844456", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-844456", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA90-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FY56", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FY56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FY56-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FY56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELI", "length": 85, "header": "tr|A0A4X1VA90-1|A0A4X1VA90_PIG Isoform 1 of Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=4 SV=1 CANONICAL=A0A4X1VA90-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VA90-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90/entry", "sequence": { "sequence": "MVKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELI", "length": 85, "header": "tr|A0A4X1VA90-1|A0A4X1VA90_PIG Isoform 1 of Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=4 SV=1 CANONICAL=A0A4X1VA90-1" }, "locus": { "chromosome": "1", "start_pos": 251277339, "end_pos": 251264380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060068.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060068.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050879.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050879.2" } ] } }, { "isoform_ac": "A0A5G2Q9S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S8/entry", "sequence": { "sequence": "MKGLKGGKEGRQPSRKSRENEAGAHTQRDFLVIVTQHLWGSRNWGCDGLATLLRNPELAWERRMMTTLAPTQYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELI", "length": 169, "header": "tr|A0A5G2Q9S8-1|A0A5G2Q9S8_PIG Computationally mapped isoform of Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=3 SV=1 CANONICAL=A0A4X1VA90-1" }, "locus": { "chromosome": "1", "start_pos": 251277985, "end_pos": 251264380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089868.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089868.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060083.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060083.1" } ] } }, { "isoform_ac": "A0A5G2QTF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF5/entry", "sequence": { "sequence": "MVKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGTSALEGECGV", "length": 97, "header": "tr|A0A5G2QTF5-1|A0A5G2QTF5_PIG Computationally mapped isoform of Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=3 SV=1 CANONICAL=A0A4X1VA90-1" }, "locus": { "chromosome": "1", "start_pos": 251277339, "end_pos": 251264966, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083224.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083224.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067431.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067431.1" } ] } }, { "isoform_ac": "A0A8D1FY56-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FY56/entry", "sequence": { "sequence": "MLFVSGVQQSESYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINELI", "length": 109, "header": "tr|A0A8D1FY56-1|A0A8D1FY56_PIG Computationally mapped isoform of Thioredoxin OS=Sus scrofa OX=9823 GN=TXN PE=3 SV=1 CANONICAL=A0A4X1VA90-1" }, "locus": { "chromosome": "1", "start_pos": 251273401, "end_pos": 251264380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005998.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005998.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005849.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005849.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-3299685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "resource": "Reactome", "description": "Detoxification of Reactive Oxygen Species" }, { "id": "R-SSC-499943", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "resource": "Reactome", "description": "Interconversion of nucleotide di- and triphosphates" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-5676934", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676934", "resource": "Reactome", "description": "Protein repair" }, { "id": "R-SSC-844456", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-844456", "resource": "Reactome", "description": "The NLRP3 inflammasome" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-disulfide reductase activity", "id": "GO:0015035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015035", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" }, { "name": "cellular homeostasis", "id": "GO:0019725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019725", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VA90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VA90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA90" }, { "id": "PF00085", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 49, "start_aa": "Ser", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VAC5-1", "uniprot_ac": "A0A4X1VAC5", "uniprot_id": "A0A4X1VAC5_PIG", "mass": { "chemical_mass": 21498.0, "monoisotopic_mass": 21498.0 }, "refseq": {}, "gene_names": [ { "name": "MDFIC2", "type": "recommended", "evidence": [ { "id": "A0A4X1VAC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ] } ], "protein_names": [ { "name": "MyoD family inhibitor domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VAC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MDFIC2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5", "locus": { "chromosome": "13", "start_pos": 51633083, "end_pos": 51741546, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000060340", "url": "https://www.ensembl.org/id/ENSSSCG00000060340" } ] } } ], "crossref": [ { "id": "A0A4X1VAC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VAC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR026134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15304", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15304", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15304:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15304:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VAC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSETELEKIKVRTAEHFENDKNNISWLKEDMQLTNEKQTDEKAINAIVINAVSEFNITDGPAKETPCEKKLSASSISVSSLEECQKKFSYLQTDTSVHPRDTDEECASLILTCLFCQFLDCLLMLPDTCETVCTNVCCPSHRYHYTSDESHSRNDCNCNCDVDCSLFESCHETSECLELAMEISEICYR", "length": 189, "header": "tr|A0A4X1VAC5-1|A0A4X1VAC5_PIG Isoform 1 of MyoD family inhibitor domain containing 2 OS=Sus scrofa OX=9823 GN=MDFIC2 PE=3 SV=1 CANONICAL=A0A4X1VAC5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VAC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5/entry", "sequence": { "sequence": "MSETELEKIKVRTAEHFENDKNNISWLKEDMQLTNEKQTDEKAINAIVINAVSEFNITDGPAKETPCEKKLSASSISVSSLEECQKKFSYLQTDTSVHPRDTDEECASLILTCLFCQFLDCLLMLPDTCETVCTNVCCPSHRYHYTSDESHSRNDCNCNCDVDCSLFESCHETSECLELAMEISEICYR", "length": 189, "header": "tr|A0A4X1VAC5-1|A0A4X1VAC5_PIG Isoform 1 of MyoD family inhibitor domain containing 2 OS=Sus scrofa OX=9823 GN=MDFIC2 PE=3 SV=1 CANONICAL=A0A4X1VAC5-1" }, "locus": { "chromosome": "13", "start_pos": 51741546, "end_pos": 51634087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093865.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093865.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076096.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076096.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "pmid": "" }, { "name": "regulation of Wnt signaling pathway", "id": "GO:0030111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030111", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "pmid": "" }, { "name": "regulation of JNK cascade", "id": "GO:0046328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046328", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VAJ5-1", "uniprot_ac": "A0A4X1VAJ5", "uniprot_id": "A0A4X1VAJ5_PIG", "mass": { "chemical_mass": 52570.0, "monoisotopic_mass": 52570.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "GRIP domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1VAJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5", "locus": {} } ], "crossref": [ { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VAJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSKSDVCTLQEEKGKRVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTVLTQRERDEAMLLLKRKQLENAALQSQVQHFHEKELSFKKDLERLNHQAVHSEKSYKLQTLMAEERAAQLGMRVSTLEEKLLLASRALEEASQQLSLSQQQEKQAVQALANMKMVLAEWMAKADHLKGQLLSAHKLQEKVQAALHGKEDQIRDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKAQRPEVFQIIGSTLGIKREAMQVLLNEEQGSGPRWMTRWLGSKSGPGTPLEPNQQSAMPKMSFSELFVKYLDIESHHTLPLLKPSAPDVKRSNAAGRKKPAQNIQLHLQTTLGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 469, "header": "tr|A0A4X1VAJ5-1|A0A4X1VAJ5_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VAJ5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VAJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5/entry", "sequence": { "sequence": "MNSKSDVCTLQEEKGKRVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTVLTQRERDEAMLLLKRKQLENAALQSQVQHFHEKELSFKKDLERLNHQAVHSEKSYKLQTLMAEERAAQLGMRVSTLEEKLLLASRALEEASQQLSLSQQQEKQAVQALANMKMVLAEWMAKADHLKGQLLSAHKLQEKVQAALHGKEDQIRDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKAQRPEVFQIIGSTLGIKREAMQVLLNEEQGSGPRWMTRWLGSKSGPGTPLEPNQQSAMPKMSFSELFVKYLDIESHHTLPLLKPSAPDVKRSNAAGRKKPAQNIQLHLQTTLGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 469, "header": "tr|A0A4X1VAJ5-1|A0A4X1VAJ5_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VAJ5-1" }, "locus": { "chromosome": "AEMK02000237.1", "start_pos": 10886, "end_pos": 9259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084244.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084244.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073689.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073689.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VAJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAJ5" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 315, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VAV4-1", "uniprot_ac": "A0A4X1VAV4", "uniprot_id": "A0A4X1VAV4_PIG", "mass": { "chemical_mass": 17366.0, "monoisotopic_mass": 17366.0 }, "refseq": {}, "gene_names": [ { "name": "LDAF1", "type": "recommended", "evidence": [ { "id": "A0A4X1VAV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ] } ], "protein_names": [ { "name": "Lipid droplet assembly factor 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VAV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LDAF1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4", "locus": { "chromosome": "3", "start_pos": 24876637, "end_pos": 24910760, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031876", "url": "https://www.ensembl.org/id/ENSSSCG00000031876" } ] } } ], "crossref": [ { "id": "ENSSSCG00000031876", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031876", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14275", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14275", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14275:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14275:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16015", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16015", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZMH3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VAV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R021", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R021", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R021-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R021-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKEEPPSISKDLQELQRKLSLLIDSVQNNSKVVALMKSPVGQYLDKHPFLTLTLLVFVAVSAVPVGFFILLVVLTSLAAFVGVILLEGLVISVGGLSLLCVLCGLGFVSLIISGIITVSYVVVSSLVNYWFSPRLLTQHNCSGDCQLPRRSADLDGLHQE", "length": 161, "header": "tr|A0A4X1VAV4-1|A0A4X1VAV4_PIG Isoform 1 of Lipid droplet assembly factor 1 OS=Sus scrofa OX=9823 GN=LDAF1 PE=1 SV=1 CANONICAL=A0A4X1VAV4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH3/entry", "sequence": { "sequence": "MAKEEPPSISKDLQELQRKLSLLIDSVQNNSKVVALMKSPVGQYLDKHPFLTLTLLVFVAVSAVPVGFFILLVVLTSLAAFVGVILLEGLVISVGGLSLLCVLCGLGFVSLIISGIITVSYVVVSSLVNYWFSPRLLTQHNCNTGNIENRCWSIPLCTSRFQTFPPSTVQLKAHPSVKSHVTSGHWFYTCRPCGPGMVADEA", "length": 202, "header": "tr|A0A286ZMH3-1|A0A286ZMH3_PIG Computationally mapped isoform of Lipid droplet assembly factor 1 OS=Sus scrofa OX=9823 GN=LDAF1 PE=3 SV=2 CANONICAL=A0A4X1VAV4-1" }, "locus": { "chromosome": "3", "start_pos": 24908194, "end_pos": 24877420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041420.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041420.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032659.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032659.2" } ] } }, { "isoform_ac": "A0A4X1VAV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4/entry", "sequence": { "sequence": "MAKEEPPSISKDLQELQRKLSLLIDSVQNNSKVVALMKSPVGQYLDKHPFLTLTLLVFVAVSAVPVGFFILLVVLTSLAAFVGVILLEGLVISVGGLSLLCVLCGLGFVSLIISGIITVSYVVVSSLVNYWFSPRLLTQHNCSGDCQLPRRSADLDGLHQE", "length": 161, "header": "tr|A0A4X1VAV4-1|A0A4X1VAV4_PIG Isoform 1 of Lipid droplet assembly factor 1 OS=Sus scrofa OX=9823 GN=LDAF1 PE=1 SV=1 CANONICAL=A0A4X1VAV4-1" }, "locus": { "chromosome": "3", "start_pos": 24908194, "end_pos": 24893159, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069666.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069666.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069784.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069784.1" } ] } }, { "isoform_ac": "A0A5G2R021-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R021/entry", "sequence": { "sequence": "MAKEEPPSISKDLQELQRKLSLLIDSVQNNSKVVALMKSPVGQYLDKHPFLTLTLLVFVAVSAVPVGFFILLVVLTSLAAFVGVILLEDC", "length": 90, "header": "tr|A0A5G2R021-1|A0A5G2R021_PIG Computationally mapped isoform of Lipid droplet assembly factor 1 OS=Sus scrofa OX=9823 GN=LDAF1 PE=3 SV=1 CANONICAL=A0A4X1VAV4-1" }, "locus": { "chromosome": "3", "start_pos": 24908194, "end_pos": 24893233, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089894.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089894.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067546.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067546.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid droplet formation", "id": "GO:0140042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140042", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAV4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VAW3-1", "uniprot_ac": "A0A4X1VAW3", "uniprot_id": "A0A4X1VAW3_PIG", "mass": { "chemical_mass": 10407.0, "monoisotopic_mass": 10407.0 }, "refseq": {}, "gene_names": [ { "name": "C10orf53", "type": "recommended", "evidence": [ { "id": "A0A4X1VAW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3" } ] } ], "protein_names": [ { "name": "Chromosome 14 C10orf53 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1VAW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C10orf53", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3", "locus": { "chromosome": "14", "start_pos": 90186925, "end_pos": 90177416, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010393", "url": "https://www.ensembl.org/id/ENSSSCG00000010393" } ] } } ], "crossref": [ { "id": "A0A4X1VAW3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VAW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR027885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153358", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153358", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VEHRTYR", "url": "https://omabrowser.org/oma/group/VEHRTYR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VAW3", "url": "https://www.orthodb.org/?gene=A0A4X1VAW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28448", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28448", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28448:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28448:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VAW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VAW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QQF5", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QQF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QQF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QQF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKNALVVLRYGPYSSVGLPVEHRTYRLEGLLAVLAEDGHQVIVEKIEDWNVVELMVNGEIIFHCNIKDLEFGGDGKLDPLCKEARIAVLNAY", "length": 93, "header": "tr|A0A4X1VAW3-1|A0A4X1VAW3_PIG Isoform 1 of Chromosome 14 C10orf53 homolog OS=Sus scrofa OX=9823 GN=C10orf53 PE=3 SV=1 CANONICAL=A0A4X1VAW3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VAW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3/entry", "sequence": { "sequence": "MPKNALVVLRYGPYSSVGLPVEHRTYRLEGLLAVLAEDGHQVIVEKIEDWNVVELMVNGEIIFHCNIKDLEFGGDGKLDPLCKEARIAVLNAY", "length": 93, "header": "tr|A0A4X1VAW3-1|A0A4X1VAW3_PIG Isoform 1 of Chromosome 14 C10orf53 homolog OS=Sus scrofa OX=9823 GN=C10orf53 PE=3 SV=1 CANONICAL=A0A4X1VAW3-1" }, "locus": { "chromosome": "14", "start_pos": 90186673, "end_pos": 90177441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011377.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011377.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011082.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011082.2" } ] } }, { "isoform_ac": "A0A8D1QQF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QQF5/entry", "sequence": { "sequence": "MPKNALVVLRYGPYSSVGLPVEHRTYRLEGLLAVLAEDGHQVIVEKIEDWNVVELMVNGEIIFHCNIKDLEFGKSLHQHSFVFSGAFPFY", "length": 90, "header": "tr|A0A8D1QQF5-1|A0A8D1QQF5_PIG Computationally mapped isoform of Chromosome 14 C10orf53 homolog OS=Sus scrofa OX=9823 GN=C10orf53 PE=3 SV=1 CANONICAL=A0A4X1VAW3-1" }, "locus": { "chromosome": "14", "start_pos": 90185707, "end_pos": 90177441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083821.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083821.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072864.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072864.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153358", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153358", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LTX9-1", "protein_name": "UPF0728 protein C10orf53 homolog", "gene_name": "CUNH10orf53", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPKQAVVTLRYGPYSAVGLSVEHRTYRLEGLQAVLANDGHEVILEQIEDWNVVELVVNEETVFRCDIQDLEFGGDGKLDPLCEEARIAVLNAF", "length": 93 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A9X2-1", "protein_name": "Similar to human chromosome 10 open reading frame 53", "gene_name": "C16h10orf53", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPENAVVTLRYGPYSAVGLSVEHHTYRLQGLQAVLAKDGHEIILQEIEDWNLVELVVNEETVFQCDIQDLEFGGDGQLDPLCEEARIAVLDAF", "length": 93 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C920-1", "protein_name": "UPF0728 protein C10orf53 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPENAQVIMRYGPYSSIGLPVEHRTYRLEGLLAVLAEDGHQVLLEKIEDWNVVELMVNGEVVFRCNIKDLEFGGDGKLDPLCREARIAVLNAY", "length": 93 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q08BN1-1", "protein_name": "UPF0728 protein C10orf53 homolog", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTNSIVTIRYGPYDSCGIVDHRTFRLDGLQAVLKGDGHRYVLEKTDDWNTVELIVNGERVYTCNITDLVFGGDGRLDPLCQEAIDAVREAY", "length": 92 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3KNL4-1", "protein_name": "UPF0728 protein C10orf53 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPAQAVVTLRYGPYSAVGLSVEHRTYRLQGLQAVLAKDGHQIILEQIEDWNLVELVVNEETVFQCDIQELEFGGDGKLDPLCEEARIAVLNAF", "length": 93 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6V4-1", "protein_name": "UPF0728 protein C10orf53", "gene_name": "C10orf53", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKNAVVILRYGPYSAAGLPVEHHTFRLQGLQAVLAIDGHEVILEKIEDWNVVELMVNEEVIFHCNIKDLEFGGDGKLDPLCEKARIAVLNAY", "length": 93 }, "evidence": [ { "id": "A0A4X1VAW3", "url": "https://omabrowser.org/oma/group/A0A4X1VAW3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VB42-1", "uniprot_ac": "A0A4X1VB42", "uniprot_id": "A0A4X1VB42_PIG", "mass": { "chemical_mass": 32335.0, "monoisotopic_mass": 32335.0 }, "refseq": { "ac": "XP_003353639", "name": "myb/SANT-like DNA-binding domain-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353639" }, "gene_names": [ { "name": "MSANTD3", "type": "recommended", "evidence": [ { "id": "A0A4X1VB42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42" } ] }, { "name": "MSANTD3", "type": "synonym", "evidence": [ { "id": "XP_003353639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353639" } ] } ], "protein_names": [ { "name": "Myb/SANT-like DNA-binding domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A4X1VB42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42/entry#names_and_taxonomy" } ] }, { "name": "myb/SANT-like DNA-binding domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "XP_003353639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353639" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VB42", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSANTD3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42", "locus": { "chromosome": "1", "start_pos": 242194863, "end_pos": 242169472, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055769", "url": "https://www.ensembl.org/id/ENSSSCG00000055769" } ] } } ], "crossref": [ { "id": "100513775", "url": "https://www.ncbi.nlm.nih.gov/gene/100513775", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028002", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028002", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513775", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513775", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VB42", "url": "https://www.orthodb.org/?gene=A0A4X1VB42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21632:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21632:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13873", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13873", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003353639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353639", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VB42", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VB42-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S1N4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S1N4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S1N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S1N4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVKRSVSPLLSTHVLGKEKIANMLPEQLYFLQSPPEEEPEYHADAAAQESFAVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITATKNYRSKTSQEGALKKMHEEEHHQQMSILQLQLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP", "length": 275, "header": "tr|A0A4X1VB42-1|A0A4X1VB42_PIG Isoform 1 of Myb/SANT-like DNA-binding domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MSANTD3 PE=3 SV=1 CANONICAL=A0A4X1VB42-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VB42-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42/entry", "sequence": { "sequence": "MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKVKRSVSPLLSTHVLGKEKIANMLPEQLYFLQSPPEEEPEYHADAAAQESFAVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITATKNYRSKTSQEGALKKMHEEEHHQQMSILQLQLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP", "length": 275, "header": "tr|A0A4X1VB42-1|A0A4X1VB42_PIG Isoform 1 of Myb/SANT-like DNA-binding domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MSANTD3 PE=3 SV=1 CANONICAL=A0A4X1VB42-1" }, "locus": { "chromosome": "1", "start_pos": 242193972, "end_pos": 242183966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063142.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063142.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052360.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052360.1" } ] } }, { "isoform_ac": "A0A8D0S1N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S1N4/entry", "sequence": { "sequence": "MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQLKKCWENIKARTKKIMAHERREKIANMLPEQLYFLQSPPEEEPEYHADAAAQESFAVSNRELCDDEKEFIHFPVCEGTSQPEPSCSAVRITATKNYRSKTSQEGALKKMHEEEHHQQMSILQLQLIQMNEVHVAKIQQIERECEMAEEEHRIKMEVLNKKKMYWERKLQTFTKEWPVSSFNRPFPNSP", "length": 257, "header": "tr|A0A8D0S1N4-1|A0A8D0S1N4_PIG Computationally mapped isoform of Myb/SANT-like DNA-binding domain-containing protein 3 OS=Sus scrofa OX=9823 GN=MSANTD3 PE=3 SV=1 CANONICAL=A0A4X1VB42-1" }, "locus": { "chromosome": "1", "start_pos": 242193972, "end_pos": 242183966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005933.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005933.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005786.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005786.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VB42", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513775", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VB42", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VB42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB42" }, { "id": "PF13873", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13873" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb/SANT-like DNA-binding", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 87, "start_aa": "Ala", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VBH1-1", "uniprot_ac": "A0A4X1VBH1", "uniprot_id": "A0A4X1VBH1_PIG", "mass": { "chemical_mass": 13000.0, "monoisotopic_mass": 13000.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VBH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VBH1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1", "locus": {} } ], "crossref": [ { "id": "A0A4X1VBH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VBH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VBH1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VBH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LWRTLSNLIGVLGGGKGLDKVALKADRGTLATSPLEPLSPREPFFPIDPRTPLLPSSPFGPAGPTRPGGPNSPFSPLIPRSPLAPGGPSRPLLPSVPVSPLLPFSPFMPTSPFSPFPPLSPESPQ", "length": 125, "header": "tr|A0A4X1VBH1-1|A0A4X1VBH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VBH1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VBH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1/entry", "sequence": { "sequence": "LWRTLSNLIGVLGGGKGLDKVALKADRGTLATSPLEPLSPREPFFPIDPRTPLLPSSPFGPAGPTRPGGPNSPFSPLIPRSPLAPGGPSRPLLPSVPVSPLLPFSPFMPTSPFSPFPPLSPESPQ", "length": 125, "header": "tr|A0A4X1VBH1-1|A0A4X1VBH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VBH1-1" }, "locus": { "chromosome": "13", "start_pos": 101193401, "end_pos": 101192720, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091231.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091231.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066713.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066713.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VBH1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VBH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VC93-1", "uniprot_ac": "A0A4X1VC93", "uniprot_id": "A0A4X1VC93_PIG", "mass": { "chemical_mass": 54566.0, "monoisotopic_mass": 54566.0 }, "refseq": { "ac": "XP_020946449", "name": "lactation elevated protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946449" }, "gene_names": [ { "name": "AFG1L", "type": "recommended", "evidence": [ { "id": "A0A4X1VC93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ] }, { "name": "AFG1L", "type": "synonym", "evidence": [ { "id": "XP_020946449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946449" } ] } ], "protein_names": [ { "name": "AFG1-like ATPase", "type": "recommended", "evidence": [ { "id": "A0A4X1VC93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93/entry#names_and_taxonomy" } ] }, { "name": "Lactation elevated protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VC93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93/entry#names_and_taxonomy" } ] }, { "name": "lactation elevated protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020946449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946449" } ] } ], "function": [ { "annotation": "Putative mitochondrial ATPase. Plays a role in mitochondrial morphology and mitochondrial protein metabolism. Promotes degradation of excess nuclear-encoded complex IV subunits (COX4I1, COX5A and COX6A1) and normal activity of complexes III and IV of the respiratory chain. Mediates mitochondrial translocation of TP53 and its transcription-independent apoptosis in response to genotoxic stress.", "evidence": [ { "database": "UniProtKB", "id": "I3LAD2", "url": "https://www.uniprot.org/uniprotkb/I3LAD2#function" }, { "database": "UniProtKB", "id": "ARBA00056788", "url": "https://www.uniprot.org/uniprotkb/ARBA00056788#function" }, { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93#function" }, { "database": "UniProtKB", "id": "A0A4X1VC99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC99#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AFG1L", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93", "locus": { "chromosome": "1", "start_pos": 74591853, "end_pos": 74367617, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040199", "url": "https://www.ensembl.org/id/ENSSSCG00000040199" } ] } } ], "crossref": [ { "id": "A0A4X1VC93", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VC93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040199", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040199", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155926", "url": "https://www.ncbi.nlm.nih.gov/gene/100155926", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155926", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155926", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ARRFINM", "url": "https://omabrowser.org/oma/group/ARRFINM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LAD2", "url": "https://www.orthodb.org/?gene=I3LAD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12169:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12169:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03969", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03969", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946449", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VC93-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VC99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VC99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LAD2", "url": "https://www.uniprot.org/uniprotkb/I3LAD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LAD2-1", "url": "https://www.uniprot.org/uniprotkb/I3LAD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASWSPLVTLRLAQSRLRGRCVGCRAWAAALAPPATAPGNSLCKAYTVQTSESISPAAATEAYSKALAVCHGPLDHYDFLIKARELKDDEHQRRVIRCLQKLHEDLKGYSIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMEKKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTHARRFITLIDNFYDLKVRIICSASAPIASLFLYEHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEVFAFQRTISRLTEMQTEQYWNEGDRSKK", "length": 480, "header": "tr|A0A4X1VC93-1|A0A4X1VC93_PIG Isoform 1 of AFG1-like ATPase OS=Sus scrofa OX=9823 GN=AFG1L PE=3 SV=1 CANONICAL=A0A4X1VC93-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VC93-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93/entry", "sequence": { "sequence": "MAASWSPLVTLRLAQSRLRGRCVGCRAWAAALAPPATAPGNSLCKAYTVQTSESISPAAATEAYSKALAVCHGPLDHYDFLIKARELKDDEHQRRVIRCLQKLHEDLKGYSIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMEKKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTHARRFITLIDNFYDLKVRIICSASAPIASLFLYEHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEVFAFQRTISRLTEMQTEQYWNEGDRSKK", "length": 480, "header": "tr|A0A4X1VC93-1|A0A4X1VC93_PIG Isoform 1 of AFG1-like ATPase OS=Sus scrofa OX=9823 GN=AFG1L PE=3 SV=1 CANONICAL=A0A4X1VC93-1" }, "locus": { "chromosome": "1", "start_pos": 74588663, "end_pos": 74367640, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046117.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046117.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050226.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050226.3" } ] } }, { "isoform_ac": "A0A4X1VC99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC99/entry", "sequence": { "sequence": "MAASWSPLVTLRLAQSRLRGRCVGCRAWAAALAPPATAPGNSLCKAYTVQTSESISPAAATEAYSKALAVCHGPLDHYDFLIKARELKDDEHQRRVIRCLQKLHEDLKGYSIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMEKKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTHARRFITLIDNFYDLKDSAEGLAMFTGEEEVFAFQRTISRLTEMQTEQYWNEGDRSKK", "length": 442, "header": "tr|A0A4X1VC99-1|A0A4X1VC99_PIG Computationally mapped isoform of AFG1-like ATPase OS=Sus scrofa OX=9823 GN=AFG1L PE=3 SV=1 CANONICAL=A0A4X1VC93-1" }, "locus": { "chromosome": "1", "start_pos": 74588663, "end_pos": 74367640, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056646.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056646.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046119.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046119.1" } ] } }, { "isoform_ac": "I3LAD2-1", "url": "https://www.uniprot.org/uniprotkb/I3LAD2/entry", "sequence": { "sequence": "MAASWSPLVTLRLAQSRLRGRCVGCRAWAAALAPPATAPGNSLCKAYTVQTSESISPAAATEAYSKALAVCHGPLDHYDFLIKARELKDDEHQRRVIRCLQKLHEDLKGYSIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMEKKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTHARRFITLIDNFYDLKVRIICSASAPIASLFLYEHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEVFAFQRTISRLTEMQTEQYWNEGDRSKKQDLMSSRHAVS", "length": 491, "header": "tr|I3LAD2-1|I3LAD2_PIG Computationally mapped isoform of AFG1-like ATPase OS=Sus scrofa OX=9823 GN=AFG1L PE=3 SV=4 CANONICAL=A0A4X1VC93-1" }, "locus": { "chromosome": "1", "start_pos": 74589237, "end_pos": 74367640, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022746.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022746.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021000.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021000.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155926", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155926", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QMB1-1", "protein_name": "AFG1-like ATPase", "gene_name": "Afg1l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAASWSPLVTLRSAARSRLTGLGAGCGARAVAVPPPTPGPGKPFWKAYTAQTSEGLRPTAASVVHSKALAVCRGPLDHYDFLIKAQELRDDEHQRRVVQCLQKLLEDLKGYSIEEAGLFPKLFSRNKPPKGLYVYGDVGTGKTMVMDMFYTYVEMKRKKRVHFHGFMLDVHRRIHRLKQSLPKRKAGFMTKSYDPIAPIAEEISQEASLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELTPAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELQLNKACGTIADCTFEELCERPLGASDYLELSKNFDTVFVRNIPQFSLAKRTQARRFITLIDNFYDYKVRIICCASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAGLSMFTGEEEIFAFQRTISRLTEMQTEQYWIEGDRSQK", "length": 480 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BQ18-1", "protein_name": "AFG1-like ATPase", "gene_name": "AFG1L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAASWSPLVTLCLTQSRLRGRCVGCRAWAAALTPSAIAPGNPLCKAYSVQPPESMSPTAATEAYSKALAVCHGPLDHYDFLIKARELKDDEHQRRVIQCLQKLHEDLKGYRIEEEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHQRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRIICSASAPVSSLFLCDHHDSELEQSRILMDDLGLSQDSAEGLAMFTGEEEIFAFQRTISRLTEMQTEQYWNEGDRSKK", "length": 480 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P32317-1", "protein_name": "Protein AFG1", "gene_name": "AFG1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MIALKPNAVRTFRQVQHCSFRICRYQSTKSNKCLTPLQEYDRLVKLGKLRDDTYQRGIISSLGDLYDSLVKYVPPVVKTPNAVDQVGGWLNGLKSVFSRGKPKNIGAYVDVSKIGNSIPRGVYLYGDVGCGKTMLMDLFYTTIPNHLTKKRIHFHQFMQYVHKRSHEIVREQNLKELGDAKGKEIDTVPFLAAEIANNSHVLCFDEFQVTDVADAMILRRLMTALLSDDYGVVLFATSNRHPDELYINGVQRQSFIPCIELIKHRTKVIFLNSPTDYRKIPRPVSSVYYFPSDTSIKYASKECKTRRETHIKEWYNYFAQASHTDDSTDSHTVHKTFYDYPLTIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDEVRRFITFLDAVYDSGGKLATTGAADFSSLFVEPEQILNDFELRPTTKEPDSVDTGMVDEMVEKHGFSKEIAKKSQMFALDEERFAFARALSRLSQMSSTDWVTKPTY", "length": 509 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q32PX9-1", "protein_name": "AFG1-like ATPase", "gene_name": "Afg1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASWSPLVTLRSAARSRLTGRGVGCGARVIAIFPPAPGPRKPLWKAYTVQTLEGVRPTAASEAHSRALAVCHGPLAHYDFLIKAQELKNDEHQRRVVQCLQKLQEDLKGYNIEEGGLFSKLFSRNKPPKGLYVYGDVGTGKTMVMDMFYEYVEVKSKRRVHFHGFMLDVHKRIHRLKQSLPKRKVGFMAKSYDPIAPIAEEISQEASLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGVDYRKRELTPAGKLYYLTSEADVGTVMDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQVRRFITLIDNFYDFKVRIICSASVPISSLFVYQHQDSESDQSRVLMDDLGLSQDSAGLSMFTGEEEIFSFQRTLSRLTEMQTEQYWIEGDRSRK", "length": 480 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3V384-1", "protein_name": "AFG1-like ATPase", "gene_name": "Afg1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASWSPLVTLRSAARSRLTGRGVGCGARVVAIPPPAPGPGKPLWKAYTVQTSEGVRPTAASEARLKALAVCHGPLDHYDFLIKSQELREDEHQRRVVQCLQKLQEDLKGYSIEEGGLFSKLFSRNKPPKGLYVYGDVGTGKTMVMDMFYAYVETKRKKRVHFHGFMLDVHRRIHHLKQSLPKRKAGFMAKSYDPIAPIAEEISQETSLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCDTLQLDSGVDYRKRELAPAGKLYYLTSEADVEAVVDKLFDELAQKQNDLTSPRILKVQGRELRLNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKRTQARRFITLIDNFYDFKVRIICSASAPISSLFLHQHQDSESDQSRILMDDLGLSQDSAGLSMFTGEEEIFAFQRTISRLTEMQTEQYWIEGDRSRK", "length": 480 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54CQ1-1", "protein_name": "AFG1-like ATPase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MITRNLNKLNKERNLTNFLKISKVSLPPFLPTITIKCNKNNNTINDFYNKIKKSTIKINNNNNNNNKNLNYNKINYCSKSFAKSEYTFTSVGNTQLDNIIKSVENQPNEGPLFVYNQMVKDGKIRVDSYQISTVKLLQNLYNQLKHKDFFKNQEFGGNQSNSGLVSFSKFLSFLGNNNNEIISGDENLIKGIYLYGDVGCGKSFLMDLFYNTIDIEKKKRIHFHHFMLDVHKRIHKWRQTKRPDEDDPIPPLSRELVKESWLLCFDEFQVTDVSDAMILKRLFSHMFDLGAILVTTSNRAPIDLYKNGLNRQLFIPFIHFLESKCLVHNLNSGVDYRLTGTRTKKVFYYPSSSSKEVADFNQLFIQLSKGEPMESKQLVLSTGRKVNCPRTVLDSIALFDFYELCDNALGADDYIELSKQFHTIFLENIPLMNESSKNQARRFIILVDVLYEHKVKLICTAASSPAQLFMSEGSNTNTSDVLQLADDLKLTPEQLSRFTGEEERFMFSRAVSRLVEMQSDEYLLKSS", "length": 527 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8WV93-1", "protein_name": "AFG1-like ATPase", "gene_name": "AFG1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASWSLLVTLRPLAQSPLRGRCVGCGAWAAALAPLATAPGKPFWKAYTVQTSESMTPTATSETYLKALAVCHGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYNIEAEGLFSKLFSRSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLSQDSAEGLSMFTGEEEIFAFQRTISRLTEMQTEQYWNEGDRTKK", "length": 481 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WDT8-1", "protein_name": "AFG1 like ATPase a", "gene_name": "afg1la", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAGKASLAALGLQFCVGNKLLSKSNLPCIISRVRRGFSTSVLSQTIDESSASTSPSSSCFGGPLEHYNSLVRDGQLREDLQQRAVVEKLDQMQKNLRGYNNDHSTFFSKFISKRKPPKGYYIFGDVGTGKTMVMDMFFNHVETEKKKRVHFHGFMLDVHKRIHRLKQSLPKRKVGRMAKAYDPIAPVAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFLNGVVVVATSNRPPDDLYKNGLQRVNFVPFIAVLKEYCQTLRLDSGIDYRRRNRPAAGKLFYLSSEPDVDATLDKLFDEMAFKQNDITRPRSLKVHGRILTLDKACGTIADCTFEELCDRPIGASDYLEISAVFDTVFIRNIPLLTLNKKTQARRFITLIDTLYEHKVRVVLKAETPLDDLFVHEHHDDHDPHETHVLLDDLGISRDAGSSLAIFTGEEEVFAFQRTVSRLTEMQTEEYWVAGDRSTN", "length": 471 }, "evidence": [ { "id": "A0A4X1VC93", "url": "https://omabrowser.org/oma/group/A0A4X1VC93/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" }, { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial protein catabolic process", "id": "GO:0035694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035694", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" }, { "name": "mitochondrial protein quality control", "id": "GO:0141164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141164", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VC93", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VC93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VCH4-1", "uniprot_ac": "A0A4X1VCH4", "uniprot_id": "A0A4X1VCH4_PIG", "mass": { "chemical_mass": 25504.0, "monoisotopic_mass": 25504.0 }, "refseq": { "ac": "XP_001928170", "name": "stathmin-4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928170" }, "gene_names": [ { "name": "STMN4", "type": "recommended", "evidence": [ { "id": "A0A4X1VCH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ] }, { "name": "STMN4", "type": "synonym", "evidence": [ { "id": "XP_001928170", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928170" } ] } ], "protein_names": [ { "name": "Stathmin-4", "type": "recommended", "evidence": [ { "id": "A0A4X1VCH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4/entry#names_and_taxonomy" } ] }, { "name": "stathmin-4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928170", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928170" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STMN4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4", "locus": { "chromosome": "14", "start_pos": 10987337, "end_pos": 11007628, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009662", "url": "https://www.ensembl.org/id/ENSSSCG00000009662" } ] } } ], "crossref": [ { "id": "A0A4X1VCH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VCH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009662", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009662", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739720", "url": "https://www.ncbi.nlm.nih.gov/gene/100739720", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5JCB", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5JCB&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6LS4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6LS4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7YHN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7YHN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036002", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036002", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739720", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LGWCAIK", "url": "https://omabrowser.org/oma/group/LGWCAIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VCH4", "url": "https://www.orthodb.org/?gene=A0A4X1VCH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LL73", "url": "https://www.orthodb.org/?gene=I3LL73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10104:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10104:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005jcb", "url": "https://www.rcsb.org/structure/pdb_00005jcb", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ls4", "url": "https://www.rcsb.org/structure/pdb_00006ls4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007yhn", "url": "https://www.rcsb.org/structure/pdb_00007yhn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5JCB", "url": "https://www.rcsb.org/structure/5JCB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6LS4", "url": "https://www.rcsb.org/structure/6LS4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7YHN", "url": "https://www.rcsb.org/structure/7YHN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928170", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928170", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1MIZ4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1MIZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF50", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF50-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z508", "url": "https://www.uniprot.org/uniprotkb/F2Z508", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z508-1", "url": "https://www.uniprot.org/uniprotkb/F2Z508-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL73", "url": "https://www.uniprot.org/uniprotkb/I3LL73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL73-1", "url": "https://www.uniprot.org/uniprotkb/I3LL73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 216, "header": "tr|A0A4X1VCH4-1|A0A4X1VCH4_PIG Isoform 1 of Stathmin-4 OS=Sus scrofa OX=9823 GN=STMN4 PE=1 SV=1 CANONICAL=A0A4X1VCH4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VCH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4/entry", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 216, "header": "tr|A0A4X1VCH4-1|A0A4X1VCH4_PIG Isoform 1 of Stathmin-4 OS=Sus scrofa OX=9823 GN=STMN4 PE=1 SV=1 CANONICAL=A0A4X1VCH4-1" }, "locus": { "chromosome": "14", "start_pos": 10994376, "end_pos": 10987868, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053021.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053021.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041407.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041407.2" } ] } }, { "isoform_ac": "A0A8D1MIZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIZ4/entry", "sequence": { "sequence": "MTLVPTYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKAPPAAR", "length": 204, "header": "tr|A0A8D1MIZ4-1|A0A8D1MIZ4_PIG Computationally mapped isoform of Stathmin-4 OS=Sus scrofa OX=9823 GN=STMN4 PE=3 SV=2 CANONICAL=A0A4X1VCH4-1" }, "locus": { "chromosome": "14", "start_pos": 10993869, "end_pos": 10990180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055955.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055955.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038434.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038434.2" } ] } }, { "isoform_ac": "A0A8W4FF50-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF50/entry", "sequence": { "sequence": "VSTAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKVSGLGS", "length": 202, "header": "tr|A0A8W4FF50-1|A0A8W4FF50_PIG Computationally mapped isoform of Stathmin-4 OS=Sus scrofa OX=9823 GN=STMN4 PE=3 SV=1 CANONICAL=A0A4X1VCH4-1" }, "locus": { "chromosome": "14", "start_pos": 10993373, "end_pos": 10990863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095300.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095300.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077870.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077870.1" } ] } }, { "isoform_ac": "F2Z508-1", "url": "https://www.uniprot.org/uniprotkb/F2Z508/entry", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKAPPAAR", "length": 203, "header": "tr|F2Z508-1|F2Z508_PIG Computationally mapped isoform of Stathmin-4 OS=Sus scrofa OX=9823 GN=STMN4 PE=1 SV=2 CANONICAL=A0A4X1VCH4-1" }, "locus": { "chromosome": "14", "start_pos": 10994376, "end_pos": 10990180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010594.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010594.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010318.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010318.3" } ] } }, { "isoform_ac": "I3LL73-1", "url": "https://www.uniprot.org/uniprotkb/I3LL73/entry", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 189, "header": "tr|I3LL73-1|I3LL73_PIG Computationally mapped isoform of Stathmin OS=Sus scrofa OX=9823 GN=STMN4 PE=3 SV=1 CANONICAL=A0A4X1VCH4-1" }, "locus": { "chromosome": "14", "start_pos": 10994376, "end_pos": 10987868, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026207.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026207.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000024840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structural Insights into the Inhibition of Tubulin by the Antitumor Agent 4beta-(1,2,4-triazol-3-ylthio)-4-deoxypodophyllotoxin.", "journal": "ACS Chem. Biol.", "date": "2017", "authors": "Zhao Wei, Zhou Chen, Guan Ze-Yuan, Yin Ping, Chen Fusheng, Tang Ya-Jie", "evidence": [ { "database": "UniProtKB", "id": "F2Z508", "url": "https://www.uniprot.org/uniprotkb/F2Z508" } ], "reference": [ { "type": "PubMed", "id": "28035796", "url": "https://glygen.org/publication/PubMed/28035796" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "A novel orally active microtubule destabilizing agent S-40 targets the colchicine-binding site and shows potent antitumor activity.", "journal": "Cancer Lett.", "date": "2020", "authors": "Du Tingting, Lin Songwen, Ji Ming, Xue Nina, Liu Yichen, Zhang Zhihui, Zhang Kehui, Zhang Jingbo, Zhang Yan, Wang Qinghua, Sheng Li, Li Yan, Lu Duo, Chen Xiaoguang, Xu Heng", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "reference": [ { "type": "PubMed", "id": "32931884", "url": "https://glygen.org/publication/PubMed/32931884" } ] }, { "title": "Optimization of Benzamide Derivatives as Potent and Orally Active Tubulin Inhibitors Targeting the Colchicine Binding Site.", "journal": "J. Med. Chem.", "date": "2022", "authors": "Lin Songwen, Du Tingting, Zhang Jingbo, Wu Deyu, Tian Hua, Zhang Kehui, Jiang Lin, Lu Duo, Sheng Li, Li Yan, Ji Ming, Chen Xiaoguang, Xu Heng", "evidence": [ { "database": "UniProtKB", "id": "F2Z508", "url": "https://www.uniprot.org/uniprotkb/F2Z508" } ], "reference": [ { "type": "PubMed", "id": "36511661", "url": "https://glygen.org/publication/PubMed/36511661" } ] } ], "pathway": [ { "id": "ssc:100739720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739720", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MX15-1", "protein_name": "Stathmin-4", "gene_name": "STMN4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRERREQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 216 }, "evidence": [ { "id": "A0A4X1VCH4", "url": "https://omabrowser.org/oma/group/A0A4X1VCH4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P63042-1", "protein_name": "Stathmin-4", "gene_name": "Stmn4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 189 }, "evidence": [ { "id": "A0A4X1VCH4", "url": "https://omabrowser.org/oma/group/A0A4X1VCH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P63043-1", "protein_name": "Stathmin-4", "gene_name": "Stmn4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 189 }, "evidence": [ { "id": "A0A4X1VCH4", "url": "https://omabrowser.org/oma/group/A0A4X1VCH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5RIC7-1", "protein_name": "Stathmin", "gene_name": "stmn4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLAAYRDKVKELPLVSLLCSCINSNRAENPTYKAEDAVDLNWCVIKEMEVIELNKRTSGQAFEVILKPPSFDVAPELNTSMPQRKDPSLEEIQKKLEAAEERRKFQEAEMLKHLAEKREHEREVIQKAFEENNNFIKNAKEKLEQRMEANKENREALLAAMLERLQEKDKHAEEVRKNKELKEEACR", "length": 188 }, "evidence": [ { "id": "A0A4X1VCH4", "url": "https://omabrowser.org/oma/group/A0A4X1VCH4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9H169-1", "protein_name": "Stathmin-4", "gene_name": "STMN4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR", "length": 189 }, "evidence": [ { "id": "A0A4X1VCH4", "url": "https://omabrowser.org/oma/group/A0A4X1VCH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of microtubule polymerization or depolymerization", "id": "GO:0031110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031110", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" }, { "name": "microtubule depolymerization", "id": "GO:0007019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007019", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "6ls4", "pdb_chain": "e", "start_pos": 76, "end_pos": 216, "overlap": "1.0", "method": "X-Ray_Crystallography", "type": "experimental", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/6ls4.pdb", "url_external": "https://www.rcsb.org/structure/6ls4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VCM7-1", "uniprot_ac": "A0A4X1VCM7", "uniprot_id": "A0A4X1VCM7_PIG", "mass": { "chemical_mass": 6295.0, "monoisotopic_mass": 6295.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VCM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7", "locus": {} } ], "crossref": [ { "id": "A0A4X1VCM7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VCM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VCM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PTPSLAPLYFAARPFSKTWSHLRQMSTVFFPFRGVAYLDSYSGKHFPKGPYLCKP", "length": 55, "header": "tr|A0A4X1VCM7-1|A0A4X1VCM7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VCM7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VCM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7/entry", "sequence": { "sequence": "PTPSLAPLYFAARPFSKTWSHLRQMSTVFFPFRGVAYLDSYSGKHFPKGPYLCKP", "length": 55, "header": "tr|A0A4X1VCM7-1|A0A4X1VCM7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VCM7-1" }, "locus": { "chromosome": "X", "start_pos": 19561214, "end_pos": 19560922, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081941.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081941.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062791.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062791.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2, "start_aa": "Thr", "end_pos": 2, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VCR2-1", "uniprot_ac": "A0A4X1VCR2", "uniprot_id": "A0A4X1VCR2_PIG", "mass": { "chemical_mass": 44902.0, "monoisotopic_mass": 44902.0 }, "refseq": { "ac": "XP_020946392", "name": "sex comb on midleg-like protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946392" }, "gene_names": [ { "name": "SCML4", "type": "recommended", "evidence": [ { "id": "A0A4X1VCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ] }, { "name": "SCML4", "type": "synonym", "evidence": [ { "id": "XP_020946392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946392" } ] } ], "protein_names": [ { "name": "Scm polycomb group protein like 4", "type": "synonym", "evidence": [ { "id": "A0A4X1VCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2/entry#names_and_taxonomy" } ] }, { "name": "sex comb on midleg-like protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020946392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946392" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCML4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2", "locus": { "chromosome": "1", "start_pos": 73843012, "end_pos": 73968699, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033392", "url": "https://www.ensembl.org/id/ENSSSCG00000033392" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033392", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033392", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09578", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09578", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154280", "url": "https://www.ncbi.nlm.nih.gov/gene/100154280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038348", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038348", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047531", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047531", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VKQGHSG", "url": "https://omabrowser.org/oma/group/VKQGHSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12247:SF85", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12247:SF85", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4V4", "url": "https://www.uniprot.org/uniprotkb/A0A287A4V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0JWP4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0JWP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0JWP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0JWP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSQRIPGRKRGRPPLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKLKSRVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLAAPQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSMGYVLRFLAKLCRSLLCDDLFSHQPFPRGTGTPKDTPETQEGRIESAKTVTTEECLVNPASMNRYSVDTSSSAFSHRGSLPTSSSLYCKRQNSGDGHLGGGSATTSSGPRTSPMTSGGLSASGLRPPGSSPKKNGTSLEGNRCASSPSPDRQDARRPRSRNPSTWSVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 414, "header": "tr|A0A4X1VCR2-1|A0A4X1VCR2_PIG Isoform 1 of Scm polycomb group protein like 4 OS=Sus scrofa OX=9823 GN=SCML4 PE=3 SV=1 CANONICAL=A0A4X1VCR2-1" }, "isoforms": [ { "isoform_ac": "A0A287A4V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4V4/entry", "sequence": { "sequence": "MTPLALSPPRSTPEPDLSSIPQDAATIPSLAAPQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSMGYVLRFLAKLCRSLLCDDLFSHQPFPRGTGTPKDTPETQEGRIESAKTVTTEECLVNPASMNRYSVDTSSSAFSHRGSLPTSSSLYCKRQNSGDGHLGGGSATTSSGPRTSPMTSGGLSASGLRPPGSSPKKNGTSLEGNRCASSPSPDRQDARRPRSRNPSTWSVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 356, "header": "tr|A0A287A4V4-1|A0A287A4V4_PIG Computationally mapped isoform of Scm polycomb group protein like 4 OS=Sus scrofa OX=9823 GN=SCML4 PE=3 SV=2 CANONICAL=A0A4X1VCR2-1" }, "locus": { "chromosome": "1", "start_pos": 73901208, "end_pos": 73850020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068304.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068304.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060877.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060877.2" } ] } }, { "isoform_ac": "A0A4X1VCR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2/entry", "sequence": { "sequence": "MQSQRIPGRKRGRPPLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKLKSRVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLAAPQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSMGYVLRFLAKLCRSLLCDDLFSHQPFPRGTGTPKDTPETQEGRIESAKTVTTEECLVNPASMNRYSVDTSSSAFSHRGSLPTSSSLYCKRQNSGDGHLGGGSATTSSGPRTSPMTSGGLSASGLRPPGSSPKKNGTSLEGNRCASSPSPDRQDARRPRSRNPSTWSVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 414, "header": "tr|A0A4X1VCR2-1|A0A4X1VCR2_PIG Isoform 1 of Scm polycomb group protein like 4 OS=Sus scrofa OX=9823 GN=SCML4 PE=3 SV=1 CANONICAL=A0A4X1VCR2-1" }, "locus": { "chromosome": "1", "start_pos": 73922166, "end_pos": 73850020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056399.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056399.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035552.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035552.1" } ] } }, { "isoform_ac": "A0A5G2QL58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL58/entry", "sequence": { "sequence": "CQRVAWIGRGTWGTPLAHMGELKSRVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLAAPQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSMGYVLRFLAKLCRSLLCDDLFSHQPFPRGTGTPKDTPETQEGRIESAKTVTTEECLVNPASMNRYSVDTSSSAFSHRGSLPTSSSLYCKRQNSGDGHLGGGSATTSSGPRTSPMTSGGLSASGLRPPGSSPKKNGTSLEGNRCGNVMHVLASPSPDLLCPCLGTTAWRGTRGLWLFEHGNTGKLEISTNPFMDVCYS", "length": 347, "header": "tr|A0A5G2QL58-1|A0A5G2QL58_PIG Computationally mapped isoform of Scm polycomb group protein like 4 OS=Sus scrofa OX=9823 GN=SCML4 PE=4 SV=2 CANONICAL=A0A4X1VCR2-1" }, "locus": { "chromosome": "1", "start_pos": 73908033, "end_pos": 73866101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084533.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084533.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065555.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065555.2" } ] } }, { "isoform_ac": "A0A8D0JWP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0JWP4/entry", "sequence": { "sequence": "MQSQRIPGRKRGRPPLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKLKSRVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLAAPQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSMGYVLRFLAKLCRSLLCDDLFSHQPFPRGTGTPKDTPETQEGRIESASSPSPDRQDARRPRSRNPSTWSVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 317, "header": "tr|A0A8D0JWP4-1|A0A8D0JWP4_PIG Computationally mapped isoform of Scm polycomb group protein like 4 OS=Sus scrofa OX=9823 GN=SCML4 PE=3 SV=1 CANONICAL=A0A4X1VCR2-1" }, "locus": { "chromosome": "1", "start_pos": 73922166, "end_pos": 73850020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040044.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040044.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048995.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048995.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MVU7-1", "protein_name": "Scm polycomb group protein like 4", "gene_name": "SCML4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERMDSLCESGENRTLSRASSMDLSNTRDTQVHWGTGNWSRKEKQGQAFGGLELKSRVLMTPLALSPPRSTPEPDLSSIPQDAATVPSLAASQALTVCLYINKQANAGPYLERRKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLCDDLFSHQPFPRGTSASDNAPESQEGRMESAKTVTAEECLVNPASMNRYGVDTSSPTFSHRGSLPTSSSLYCKRQNSGDGHLGGGSATTVSGPRASPLSPGGPSAPGLRPPGSSPKRNGTALEGNRCASNPSPDRQDARRPRSRNPSSWSVEDVVWFLKDADPQALGPHVELFRKHEIDGNALLLLKSDMIMKYLGLKLGPALKLCYHIDKLKQDKF", "length": 415 }, "evidence": [ { "id": "A0A4X1VCR2", "url": "https://omabrowser.org/oma/group/A0A4X1VCR2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2L7E5-1", "protein_name": "Sex comb on midleg-like protein 4", "gene_name": "Scml4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQTQKVPGRKRGRPPLHSTPVQMAVHNLYSASAGSVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLVVPQALTVCLYINKQANAGPYLERRKLQQLPERLGPERPAAVLQQAVQACIDCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLCDNLFSHLPYPGSLSATEKTQEREDGRTDSAQAATAEECLANPVGMNRYSMDTTSTAFSHRGSLTHSSSLYYKKLNSGDSHVVGGPATTTSGSRTNPVASGGPSTPGLRFLASSPKRNDVEGNRCASSPSPEVQDTRRPSSRNPSTWTVEDVVRFVKDADPQALGPHVDLFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIEKLKQAKF", "length": 412 }, "evidence": [ { "id": "A0A4X1VCR2", "url": "https://omabrowser.org/oma/group/A0A4X1VCR2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6AHS8-1", "protein_name": "Scm polycomb group protein like 4", "gene_name": "Scml4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTQRVPGRKRGRPPLHSTRVQMAVHNLYSASSASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSSIPQDAATVPSLVVPQAVTVCLYINKQADAGPYLERRKLQQLPERLGPERPAAVLQQAVQACIDCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRNLPVVNSVGYVLRFLTKLCRSLLCDNLFSHLPFPGSIGASEKAQEKEDGRTESAKVATAEECLVNAVGMNRYTIDVSSTAFSHRGSVTHSSSLYYKRLNSGDSHLVGGPATTTSGSRTNPVPSGGSSTPGLRLPASSPKRNGTAIEGNRCAPSPSPEIQDTRRPSSRNPSTWTVEDVVRFVKDADPQALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 414 }, "evidence": [ { "id": "A0A4X1VCR2", "url": "https://omabrowser.org/oma/group/A0A4X1VCR2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80VG1-1", "protein_name": "Sex comb on midleg-like protein 4", "gene_name": "Scml4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQTQRVPGRKRGRPPLHSTRVQMAVHNLYSASAASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLVVPEALTVCLYINKQADVGPYLERRKLQQLPERLGPERPATVLQQAVQACIDCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLCDNLFSHLPFPGSIGASDKAQEREDGRTESAKVATAEECLANAVGMNRYAMDFSHRGSVTHSSSLYKRLTCGDSHLAGGPATTTSGSRTNPVPSGGSSSPGLRLPASSPKRNGTAIEGNRCAPSPSPEVQDTRRPSSRNPSTWTVEDVVRFVKDADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 408 }, "evidence": [ { "id": "A0A4X1VCR2", "url": "https://omabrowser.org/oma/group/A0A4X1VCR2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N228-1", "protein_name": "Sex comb on midleg-like protein 4", "gene_name": "SCML4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQSQRIPGRKRGRPSLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKIKSRVLMTPLALSPPRSTPEPDLSSIPQDAATVPSLAAPQALTVCLYINKQANAGPYLERKKVQQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQDARRPRSRNPSAWTVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHIDKLKQAKF", "length": 414 }, "evidence": [ { "id": "A0A4X1VCR2", "url": "https://omabrowser.org/oma/group/A0A4X1VCR2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCR2" }, { "id": "SM00454", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00454" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 343, "end_pos": 412, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VCV5-1", "uniprot_ac": "A0A4X1VCV5", "uniprot_id": "A0A4X1VCV5_PIG", "mass": { "chemical_mass": 8895.0, "monoisotopic_mass": 8895.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Protein phosphatase 6 catalytic subunit", "type": "recommended", "evidence": [ { "id": "A0A4X1VCV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCV5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5", "locus": {} } ], "crossref": [ { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VCV5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPLDLDKYVEIVRLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGHAKPNMEMLMPGDTVPKFLTCSQ", "length": 79, "header": "tr|A0A4X1VCV5-1|A0A4X1VCV5_PIG Isoform 1 of Protein phosphatase 6 catalytic subunit OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VCV5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VCV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5/entry", "sequence": { "sequence": "MAPLDLDKYVEIVRLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGHAKPNMEMLMPGDTVPKFLTCSQ", "length": 79, "header": "tr|A0A4X1VCV5-1|A0A4X1VCV5_PIG Isoform 1 of Protein phosphatase 6 catalytic subunit OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VCV5-1" }, "locus": { "chromosome": "AEMK02000694.1", "start_pos": 54897, "end_pos": 54447, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079326.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079326.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071092.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071092.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCV5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCV5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VD49-1", "uniprot_ac": "A0A4X1VD49", "uniprot_id": "A0A4X1VD49_PIG", "mass": { "chemical_mass": 32738.0, "monoisotopic_mass": 32738.0 }, "refseq": { "ac": "NP_001230243", "name": "four and a half LIM domains protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230243" }, "gene_names": [ { "name": "FHL5", "type": "recommended", "evidence": [ { "id": "A0A4X1VD49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ] }, { "name": "FHL5", "type": "synonym", "evidence": [ { "id": "NP_001230243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230243" } ] } ], "protein_names": [ { "name": "Four and a half LIM domains protein 5", "type": "recommended", "evidence": [ { "id": "A0A4X1VD49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49/entry#names_and_taxonomy" } ] }, { "name": "four and a half LIM domains protein 5", "type": "synonym", "evidence": [ { "id": "NP_001230243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230243" } ] } ], "function": [ { "annotation": "May be involved in the regulation of spermatogenesis. Stimulates CREM transcriptional activity in a phosphorylation-independent manner.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49#function" }, { "database": "UniProtKB", "id": "ARBA00025444", "url": "https://www.uniprot.org/uniprotkb/ARBA00025444#function" }, { "database": "UniProtKB", "id": "A0A5G2QZT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZT7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FHL5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49", "locus": { "chromosome": "1", "start_pos": 63754067, "end_pos": 63705936, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004340", "url": "https://www.ensembl.org/id/ENSSSCG00000004340" } ] } } ], "crossref": [ { "id": "A0A4X1VD49", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VD49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004340", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004340", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09343", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09343", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09346", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09346", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09347", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09347", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09428", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09428", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152075", "url": "https://www.ncbi.nlm.nih.gov/gene/100152075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152075", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152075", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ERCFNCA", "url": "https://omabrowser.org/oma/group/ERCFNCA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VD49", "url": "https://www.orthodb.org/?gene=A0A4X1VD49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24205", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24205", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24205:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24205:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230243", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230243", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VD49-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTAQFDCQYCTASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESDSKDLCYKGRHWHEGCFNCAKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTKPLISKENGNYCVPCFEKEFAHYCSFCKKVITSGGITFHDQPWHKECFLCSGCRKELCEEEFMSKDDYPFCLDCYNHLYAKKCSACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTQNKEIFCRKCGSGVDADN", "length": 284, "header": "tr|A0A4X1VD49-1|A0A4X1VD49_PIG Isoform 1 of Four and a half LIM domains protein 5 OS=Sus scrofa OX=9823 GN=FHL5 PE=4 SV=1 CANONICAL=A0A4X1VD49-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VD49-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49/entry", "sequence": { "sequence": "MTTAQFDCQYCTASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESDSKDLCYKGRHWHEGCFNCAKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTKPLISKENGNYCVPCFEKEFAHYCSFCKKVITSGGITFHDQPWHKECFLCSGCRKELCEEEFMSKDDYPFCLDCYNHLYAKKCSACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTQNKEIFCRKCGSGVDADN", "length": 284, "header": "tr|A0A4X1VD49-1|A0A4X1VD49_PIG Isoform 1 of Four and a half LIM domains protein 5 OS=Sus scrofa OX=9823 GN=FHL5 PE=4 SV=1 CANONICAL=A0A4X1VD49-1" }, "locus": { "chromosome": "1", "start_pos": 63751983, "end_pos": 63738277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004796.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004796.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004683.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004683.2" } ] } }, { "isoform_ac": "A0A5G2QZT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZT7/entry", "sequence": { "sequence": "MTTAQFDCQYCTASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESDSKDLCYKGRHWHEGCFNCAKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTKPLISKENGNYCVPCFEKEFAHYCSFCKKVITSGGITFHDQPWHKECFLCSGCRKELCEEEFMSKDDYPFCLDCYNHLYAKKCSACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTQNKEIFCRKCGSGVDADNK", "length": 285, "header": "tr|A0A5G2QZT7-1|A0A5G2QZT7_PIG Computationally mapped isoform of Four and a half LIM domains protein 5 OS=Sus scrofa OX=9823 GN=FHL5 PE=4 SV=1 CANONICAL=A0A4X1VD49-1" }, "locus": { "chromosome": "1", "start_pos": 63751983, "end_pos": 63738277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068060.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068060.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063765.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063765.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152075", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C1I0-1", "protein_name": "Four and a half LIM domains protein 5", "gene_name": "FHL5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTSNHSDCHYCLQSLRGRKYALKEENAYCVRCYDSLFANSCEECKEPIECDSKDLAYKGRHWHERCFKCTKCSRSLVEKPFAAKDELLLCTECYSNEYSSKCFHCQKTIMPGSRKMEFKGSSWHESCFVCQYCQQPLGTKPLITKDNENYCVPCFEKQFAHRCYSCKKVITSGGVAYHDQPWHKECFVCAGCKTQLSGQRFVSKDEYPYCVDCFSKFYAKKCTACKKPITALGGAKFVSFEECQWHEECFNCARCSVSLVGQGFLTKQDAVLCHECGSS", "length": 279 }, "evidence": [ { "id": "A0A4X1VD49", "url": "https://omabrowser.org/oma/group/A0A4X1VD49/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q2YDK0-1", "protein_name": "Four and a half LIM domains protein 5", "gene_name": "FHL5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTPQFYCQYCMASLLGKKYVLKDDNPYCVSCYDRIFSNYCEECKEPIESGSKDLCYKGHHWHEGCFNCTKCNHSLVEKPFAAKDERLLCSECYSNECSSKCFHCKKTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTKPLISKESGNYCVPCFEKEFAHYCSFCKKVITSGGITFRDQPWHKECFLCSGCRKELCEEEFMSRDDYPFCLDCYNHLYAKKCAACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTHNKEIFCRKCGSGVDTDI", "length": 284 }, "evidence": [ { "id": "A0A4X1VD49", "url": "https://omabrowser.org/oma/group/A0A4X1VD49/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5TD97-1", "protein_name": "Four and a half LIM domains protein 5", "gene_name": "FHL5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQLWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI", "length": 284 }, "evidence": [ { "id": "A0A4X1VD49", "url": "https://omabrowser.org/oma/group/A0A4X1VD49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WTX7-1", "protein_name": "Four and a half LIM domains protein 5", "gene_name": "Fhl5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSSQFDCQYCTSSLIGKKYVLKDDNLYCISCYDRIFSNYCEQCKEPIESDSKDLCYKNRHWHEGCFRCNKCHHSLVEKPFVAKDDRLLCTDCYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCEHCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFRDQIWHKECFLCSGCRKELYEEAFMSKDDFPFCLDCYNHLYAKKCAACTKPITGLRGAKFICFQDRQWHSECFNCGKCSVSLVGEGFLTHNMEILCRKCGSGADTDA", "length": 284 }, "evidence": [ { "id": "A0A4X1VD49", "url": "https://omabrowser.org/oma/group/A0A4X1VD49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VD49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD49" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 100, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VDQ8-1", "uniprot_ac": "A0A4X1VDQ8", "uniprot_id": "A0A4X1VDQ8_PIG", "mass": { "chemical_mass": 57598.0, "monoisotopic_mass": 57598.0 }, "refseq": {}, "gene_names": [ { "name": "TRIM69", "type": "recommended", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase TRIM69", "type": "recommended", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 36", "type": "synonym", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry#names_and_taxonomy" } ] }, { "name": "RING-type E3 ubiquitin transferase TRIM69", "type": "synonym", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry#names_and_taxonomy" } ] }, { "name": "Tripartite motif-containing protein 69", "type": "synonym", "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin ligase that plays an important role in antiviral immunity by restricting different viral infections including dengue virus or vesicular stomatitis indiana virus. Ubiquitinates viral proteins such as dengue virus NS3 thereby limiting infection. In addition, acts as a key mediator of type I interferon induced microtubule stabilization by directly associating to microtubules independently of its E3 ligase activity. Also plays a role in cataract formation together with TP53. Mechanistically, inhibits UVB-induced cell apoptosis and reactive oxygen species (ROS) production by inducing TP53 ubiquitination. Regulates centrosome dynamics and mitotic progression by ubiquitinating STK3/MST2; leading to its redistribution to the perinuclear cytoskeleton and subsequent phosphorylation by PLK1.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8#function" }, { "database": "UniProtKB", "id": "ARBA00057076", "url": "https://www.uniprot.org/uniprotkb/ARBA00057076#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM69", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8", "locus": { "chromosome": "1", "start_pos": 126775217, "end_pos": 126814508, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004681", "url": "https://www.ensembl.org/id/ENSSSCG00000004681" } ] } } ], "crossref": [ { "id": "A0A4X1VDQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VDQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15818", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15818", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16611", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16611", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VDQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEE7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VGA0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VGA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVSSNPSCNTDSDNYIEVNDLITQIPSKVQIQDITMELHCPLCNDWFRDPLMLTCGHNFCQSCIENFWKQEAKETFCPECKMLCQYSNCTFNLVLEKLIEKIKKLPLLKGHPQCQEHGENLKLFSKPDGKLICFQCKDARLSVGQSKEFLQIADAVRFFTEELIIHQGQLEATLKELQSLRNMQKDAIAAYKENKLHLQQHISLEFLKLHQFLHSKEKDILNELREEGKALNEEMELNLSHIQEQCLLAKEMLVSIQARMEQQNSFDFLKDITPLLDSLDQGMRVLTPRELISRKLNLGLFKGPIQYMMWREMQSTLSPGLSPLTLDPKTAHPNLVLSKNRTSVWHGDIKQVMPDDPERFDSSVAVLGSKGFTSGKWYWEVEVAKKTKWTVGVVRESILRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSCSLKLNNNLNKVGIYLDYEGGQVSFYNAKTMNHIYTFSSTFMEKLYPYFCPCLNDGGENKEPLHIVHPQ", "length": 500, "header": "tr|A0A4X1VDQ8-1|A0A4X1VDQ8_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM69 OS=Sus scrofa OX=9823 GN=TRIM69 PE=3 SV=1 CANONICAL=A0A4X1VDQ8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VDQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8/entry", "sequence": { "sequence": "MEVSSNPSCNTDSDNYIEVNDLITQIPSKVQIQDITMELHCPLCNDWFRDPLMLTCGHNFCQSCIENFWKQEAKETFCPECKMLCQYSNCTFNLVLEKLIEKIKKLPLLKGHPQCQEHGENLKLFSKPDGKLICFQCKDARLSVGQSKEFLQIADAVRFFTEELIIHQGQLEATLKELQSLRNMQKDAIAAYKENKLHLQQHISLEFLKLHQFLHSKEKDILNELREEGKALNEEMELNLSHIQEQCLLAKEMLVSIQARMEQQNSFDFLKDITPLLDSLDQGMRVLTPRELISRKLNLGLFKGPIQYMMWREMQSTLSPGLSPLTLDPKTAHPNLVLSKNRTSVWHGDIKQVMPDDPERFDSSVAVLGSKGFTSGKWYWEVEVAKKTKWTVGVVRESILRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSCSLKLNNNLNKVGIYLDYEGGQVSFYNAKTMNHIYTFSSTFMEKLYPYFCPCLNDGGENKEPLHIVHPQ", "length": 500, "header": "tr|A0A4X1VDQ8-1|A0A4X1VDQ8_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM69 OS=Sus scrofa OX=9823 GN=TRIM69 PE=3 SV=1 CANONICAL=A0A4X1VDQ8-1" }, "locus": { "chromosome": "1", "start_pos": 126812608, "end_pos": 126775867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086329.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086329.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073210.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073210.1" } ] } }, { "isoform_ac": "A0A4X1VEE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE7/entry", "sequence": { "sequence": "MEEELIIHQGQLEATLKELQSLRNMQKDAIAAYKENKLHLQQHISLEFLKLHQFLHSKEKDILNELREEGKALNEEMELNLSHIQEQCLLAKEMLVSIQARMEQQNSFDFLKDITPLLDSLDQGMRVLTPRELISRKLNLGLFKGPIQYMMWREMQSTLSPGLSPLTLDPKTAHPNLVLSKNRTSVWHGDIKQVMPDDPERFDSSVAVLGSKGFTSGKWYWEVEVAKKTKWTVGVVRESILRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSCSLKLNNNLNKVGIYLDYEGGQVSFYNAKTMNHIYTFSSTFMEKLYPYFCPCLNDGGENKEPLHIVHPQ", "length": 341, "header": "tr|A0A4X1VEE7-1|A0A4X1VEE7_PIG Computationally mapped isoform of Tripartite motif containing 69 OS=Sus scrofa OX=9823 GN=TRIM69 PE=4 SV=1 CANONICAL=A0A4X1VDQ8-1" }, "locus": { "chromosome": "1", "start_pos": 126812608, "end_pos": 126775867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079150.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079150.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061981.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061981.1" } ] } }, { "isoform_ac": "A0A4X1VGA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA0/entry", "sequence": { "sequence": "MEEELIIHQGQLEATLKELQSLRNMQKDAIAAYKDITPLLDSLDQGMRVLTPRELISRKLNLGLFKGPIQYMMWREMQSTLSPGLSPLTLDPKTAHPNLVLSKNRTSVWHGDIKQVMPDDPERFDSSVAVLGSKGFTSGKWYWEVEVAKKTKWTVGVVRESILRKGSCPLTPEQGFWLLRLRNQTDLKALDLPSCSLKLNNNLNKVGIYLDYEGGQVSFYNAKTMNHIYTFSSTFMEKLYPYFCPCLNDGGENKEPLHIVHPQ", "length": 263, "header": "tr|A0A4X1VGA0-1|A0A4X1VGA0_PIG Computationally mapped isoform of Tripartite motif containing 69 OS=Sus scrofa OX=9823 GN=TRIM69 PE=4 SV=1 CANONICAL=A0A4X1VDQ8-1" }, "locus": { "chromosome": "1", "start_pos": 126812608, "end_pos": 126775867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080888.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080888.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065570.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 304, "end_pos": 500, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VDQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDQ8" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 82, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VDT1-1", "uniprot_ac": "A0A4X1VDT1", "uniprot_id": "A0A4X1VDT1_PIG", "mass": { "chemical_mass": 26794.0, "monoisotopic_mass": 26794.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VDT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1", "locus": {} } ], "crossref": [ { "id": "A0A4X1VDT1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VDT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VDT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VDT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRVNTLAGWARSRGRECRGGSETARFSAPSAGGSPGGADASSRGWLGASWDSGVHPWAHRLGAPSAGPSPVGEPGTSLASWVGSCPPEPGEASSPGLRASDSAFSCLEEFAREECNCLAAVVASGKVSSSESRGCNCGESLLWSCCTAAATARLPGQGDRSASGAGWTQPSGRSHSGSWGFFRGEPSSHTSVCFDCLLFSVSLSRSLEEVTSLGETDLAFGLMGFSNPFLVFLLLPAVNRVPNFPKTGFLLFSSGGCALD", "length": 261, "header": "tr|A0A4X1VDT1-1|A0A4X1VDT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VDT1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VDT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1/entry", "sequence": { "sequence": "MSRVNTLAGWARSRGRECRGGSETARFSAPSAGGSPGGADASSRGWLGASWDSGVHPWAHRLGAPSAGPSPVGEPGTSLASWVGSCPPEPGEASSPGLRASDSAFSCLEEFAREECNCLAAVVASGKVSSSESRGCNCGESLLWSCCTAAATARLPGQGDRSASGAGWTQPSGRSHSGSWGFFRGEPSSHTSVCFDCLLFSVSLSRSLEEVTSLGETDLAFGLMGFSNPFLVFLLLPAVNRVPNFPKTGFLLFSSGGCALD", "length": 261, "header": "tr|A0A4X1VDT1-1|A0A4X1VDT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VDT1-1" }, "locus": { "chromosome": "1", "start_pos": 72700356, "end_pos": 72699574, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080081.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080081.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067795.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VDT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VEE9-1", "uniprot_ac": "A0A4X1VEE9", "uniprot_id": "A0A4X1VEE9_PIG", "mass": { "chemical_mass": 64170.0, "monoisotopic_mass": 64170.0 }, "refseq": { "ac": "XP_003357085", "name": "adenosine deaminase domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357085" }, "gene_names": [ { "name": "ADAD1", "type": "recommended", "evidence": [ { "id": "A0A4X1VEE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ] }, { "name": "ADAD1", "type": "synonym", "evidence": [ { "id": "XP_003357085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357085" } ] } ], "protein_names": [ { "name": "Adenosine deaminase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1VEE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9/entry#names_and_taxonomy" } ] }, { "name": "Testis nuclear RNA-binding protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VEE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9/entry#names_and_taxonomy" } ] }, { "name": "adenosine deaminase domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003357085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357085" } ] } ], "function": [ { "annotation": "Required for male fertility and normal male germ cell differentiation. Plays a role in spermatogenesis. Binds to RNA but not to DNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9#function" }, { "database": "UniProtKB", "id": "ARBA00055354", "url": "https://www.uniprot.org/uniprotkb/ARBA00055354#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADAD1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9", "locus": { "chromosome": "8", "start_pos": 101673571, "end_pos": 101715494, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009089", "url": "https://www.ensembl.org/id/ENSSSCG00000009089" } ] } } ], "crossref": [ { "id": "A0A4X1VEE9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VEE9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19905", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19905", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624194", "url": "https://www.ncbi.nlm.nih.gov/gene/100624194", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624194", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624194", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VEE9", "url": "https://www.orthodb.org/?gene=A0A4X1VEE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10910", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10910", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10910:SF103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10910:SF103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02137", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02137", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003357085", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSNDWFQSSRVPSFAQMLKKNLPVQTSAQTVTTPTGYSSESYSMSNMASKVTQVTGNFPEPLLSKGLSSISNPVLPPKKIPKEFIMKYKRGEINPVSALHQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDELLQLDEPEPRISETSGPPPIPAEPIVSPEPVYVSKVHYEGRHIQFAKISQIVKETFNQLISNHSEYLKCSNSLAAFVIERAGQHEVVAIGTGEYNYSQCIKLNGRVLHDTHAVVTARRSLLRYFYRQLLLFYSKNPAMMEKSIFCTEPASNLLTLKQNINIYLYMNQVPKGSAQIKSQLRLNPHSVSAFEANEELSLHVAVEGKIYLTVYCPTDVVNRISSMSSSDKLTRWEVLGVQGALLSHFIQPVYINSMLVGDGNCSDTRGLEIAIKQRVDDALTSKLPMFYLVNRPHISLVPSAYQLQTNLEYKSLSVNWAQGDISLEIVDGLSGKITESSPFKSGVSMASRLCKAAMLSRFNLLAKEAKKEDLLEASSYHAAKHMSGSYQEAKTLLKSYLQQHGYGSWIVKSPCIEQFSM", "length": 577, "header": "tr|A0A4X1VEE9-1|A0A4X1VEE9_PIG Isoform 1 of Adenosine deaminase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ADAD1 PE=3 SV=1 CANONICAL=A0A4X1VEE9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VEE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9/entry", "sequence": { "sequence": "MSGSNDWFQSSRVPSFAQMLKKNLPVQTSAQTVTTPTGYSSESYSMSNMASKVTQVTGNFPEPLLSKGLSSISNPVLPPKKIPKEFIMKYKRGEINPVSALHQFAQMQRVQLDLKETVTTGNVMGPYFAFCAVVDGIQYKTGLGQNKKESRSNAAKLALDELLQLDEPEPRISETSGPPPIPAEPIVSPEPVYVSKVHYEGRHIQFAKISQIVKETFNQLISNHSEYLKCSNSLAAFVIERAGQHEVVAIGTGEYNYSQCIKLNGRVLHDTHAVVTARRSLLRYFYRQLLLFYSKNPAMMEKSIFCTEPASNLLTLKQNINIYLYMNQVPKGSAQIKSQLRLNPHSVSAFEANEELSLHVAVEGKIYLTVYCPTDVVNRISSMSSSDKLTRWEVLGVQGALLSHFIQPVYINSMLVGDGNCSDTRGLEIAIKQRVDDALTSKLPMFYLVNRPHISLVPSAYQLQTNLEYKSLSVNWAQGDISLEIVDGLSGKITESSPFKSGVSMASRLCKAAMLSRFNLLAKEAKKEDLLEASSYHAAKHMSGSYQEAKTLLKSYLQQHGYGSWIVKSPCIEQFSM", "length": 577, "header": "tr|A0A4X1VEE9-1|A0A4X1VEE9_PIG Isoform 1 of Adenosine deaminase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ADAD1 PE=3 SV=1 CANONICAL=A0A4X1VEE9-1" }, "locus": { "chromosome": "8", "start_pos": 101714842, "end_pos": 101673580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009955.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009955.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009698.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009698.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624194", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624194", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "adenosine to inosine editing", "id": "GO:0006382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006382", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "tRNA-specific adenosine deaminase activity", "id": "GO:0008251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008251", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" }, { "name": "double-stranded RNA adenosine deaminase activity", "id": "GO:0003726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003726", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEE9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VEE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" }, { "id": "PS50141", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50141" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "A to I editase", "eco_id": "ECO_0000259", "start_pos": 249, "end_pos": 575, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VEE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEE9" }, { "id": "PS50137", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50137" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DRBM", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 164, "start_aa": "Asn", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 223, "end_pos": 225 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 420, "end_pos": 422 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VEM7-1", "uniprot_ac": "A0A4X1VEM7", "uniprot_id": "A0A4X1VEM7_PIG", "mass": { "chemical_mass": 12472.0, "monoisotopic_mass": 12472.0 }, "refseq": { "ac": "XP_005659429", "name": "60S ribosomal protein L36a-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659429" }, "gene_names": [ { "name": "LOC102163847", "type": "recommended", "evidence": [ { "id": "A0A4X1VEM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ] }, { "name": "LOC102163847", "type": "synonym", "evidence": [ { "id": "XP_005659429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659429" } ] } ], "protein_names": [ { "name": "60S ribosomal protein L36a-like", "type": "recommended", "evidence": [ { "id": "A0A4X1VEM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L36a-like", "type": "synonym", "evidence": [ { "id": "XP_005659429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659429" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102163847", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7", "locus": {} } ], "crossref": [ { "id": "A0A4X1VEM7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VEM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "102163847", "url": "https://www.ncbi.nlm.nih.gov/gene/102163847", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000552", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000552", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102163847", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102163847", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VEM7", "url": "https://www.orthodb.org/?gene=A0A4X1VEM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00935", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00935", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659429", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659429", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNIPKTHQTFSKKYGKHQPCKVTQYKKGKDSLCAQAKWHYDRKQSDYGRQTKLIFQIKAKTTKKIVLRLECIEPNCTSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106, "header": "tr|A0A4X1VEM7-1|A0A4X1VEM7_PIG Isoform 1 of 60S ribosomal protein L36a-like OS=Sus scrofa OX=9823 GN=LOC102163847 PE=3 SV=1 CANONICAL=A0A4X1VEM7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VEM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7/entry", "sequence": { "sequence": "MVNIPKTHQTFSKKYGKHQPCKVTQYKKGKDSLCAQAKWHYDRKQSDYGRQTKLIFQIKAKTTKKIVLRLECIEPNCTSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106, "header": "tr|A0A4X1VEM7-1|A0A4X1VEM7_PIG Isoform 1 of 60S ribosomal protein L36a-like OS=Sus scrofa OX=9823 GN=LOC102163847 PE=3 SV=1 CANONICAL=A0A4X1VEM7-1" }, "locus": { "chromosome": "1", "start_pos": 75118778, "end_pos": 75118461, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004852.2", "url": "https://www.ensembl.org/id/ENSSSCT00000004852.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004738.1", "url": "https://www.ensembl.org/id/ENSSSCP00000004738.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102163847", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102163847", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VEP6-1", "uniprot_ac": "A0A4X1VEP6", "uniprot_id": "A0A4X1VEP6_PIG", "mass": { "chemical_mass": 38408.0, "monoisotopic_mass": 38408.0 }, "refseq": {}, "gene_names": [ { "name": "MAGEB18", "type": "recommended", "evidence": [ { "id": "A0A4X1VEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ] } ], "protein_names": [ { "name": "MAGE family member B18", "type": "synonym", "evidence": [ { "id": "A0A4X1VEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAGEB18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6", "locus": { "chromosome": "X", "start_pos": 22084040, "end_pos": 22083012, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012186", "url": "https://www.ensembl.org/id/ENSSSCG00000012186" } ] } } ], "crossref": [ { "id": "A0A4X1VEP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VEP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IRHCYAL", "url": "https://omabrowser.org/oma/group/IRHCYAL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VEP6", "url": "https://www.orthodb.org/?gene=A0A4X1VEP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRGQKSKLRAREKRRQARAETQGLEDAQATAAAAGESLSLVHALTEDRPQNLSAAETPSTPEAPQGTTDASAAVSCTNSDEGTSSQKEESSKSSRGTEGSRRDPLNKKVVLLVQFLLQKYQKKEPITKADMLKFVIKKYKYHFNEILKRASEHMELAFGVDLKEVDPTRHCYALVSKLDLTFDGTMNEEENMPKTGLLMIVLGVIFMNGKCAPEEEIWEVLNMMGVYAERKHFLYGDPKKVITEDLVQLKYLEYRQVPDSDPPRYEFLWGPRAHAETSKMKVLEFLAKVHDTVPSAFPSWYEEALRDEEERAQARAAARARLAAMASVRSRATASNLSHAK", "length": 342, "header": "tr|A0A4X1VEP6-1|A0A4X1VEP6_PIG Isoform 1 of MAGE family member B18 OS=Sus scrofa OX=9823 GN=MAGEB18 PE=4 SV=1 CANONICAL=A0A4X1VEP6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6/entry", "sequence": { "sequence": "MPRGQKSKLRAREKRRQARAETQGLEDAQATAAAAGESLSLVHALTEDRPQNLSAAETPSTPEAPQGTTDASAAVSCTNSDEGTSSQKEESSKSSRGTEGSRRDPLNKKVVLLVQFLLQKYQKKEPITKADMLKFVIKKYKYHFNEILKRASEHMELAFGVDLKEVDPTRHCYALVSKLDLTFDGTMNEEENMPKTGLLMIVLGVIFMNGKCAPEEEIWEVLNMMGVYAERKHFLYGDPKKVITEDLVQLKYLEYRQVPDSDPPRYEFLWGPRAHAETSKMKVLEFLAKVHDTVPSAFPSWYEEALRDEEERAQARAAARARLAAMASVRSRATASNLSHAK", "length": 342, "header": "tr|A0A4X1VEP6-1|A0A4X1VEP6_PIG Isoform 1 of MAGE family member B18 OS=Sus scrofa OX=9823 GN=MAGEB18 PE=4 SV=1 CANONICAL=A0A4X1VEP6-1" }, "locus": { "chromosome": "X", "start_pos": 22084037, "end_pos": 22083012, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013331.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013331.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012973.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012973.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3V932-1", "protein_name": "MAGE family member B18", "gene_name": "Mageb18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRGQKSKLRAREKRRQARAKNALEGQASPSPFFGCPHQTIPVAGMPTPPNMPMGAYSTYSDTYANTHAQNLDEKSSDDSEDVEDWCKDPINHKVVLLVQFLIEKYQKKEVITKADMLKSVIKTSKNHFNEILKRASEHMELAFGVDLKEVDPNRHCYALFNKLEHTFDGVMGEEKVPNSGLLMIVLGVIFMKDNCAPETEIWNVLSMMGVYANRKHFIYGDPKKVITEDMVQLKYLEYRQVPNSNPPSFEFMWGPRARAEISKMKILEFWAKIHDTTPDSFATLYKAALKDDEERAQARAAARARTATTASSYSRAMMHSSPPY", "length": 325 }, "evidence": [ { "id": "A0A4X1VEP6", "url": "https://omabrowser.org/oma/group/A0A4X1VEP6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BQR7-1", "protein_name": "Melanoma-associated antigen B18", "gene_name": "Mageb18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKSKLRAREKRRQARAKNAQEKEASPGPFYGCPHQASPVASMPTSPNMPMGEQSTFSHSYTSTSDQNLDEKSSDDSEDTEDWCKDPINHKVVLLVQFLMEKYQKKEVITKADMLKYVIKTSKNHFNEILKRASEHMELAFGIDLKEVDPNRHCYALFNKLEHTFDGVMGEEKMPSSGLLMIVLGVIFMNDNCVSETEIWNVLSMMGVYANRKHFIYGDPKKVITEDMVQLKYLEYQQVPNSNPPSFEFTWGPRACAEISKMKILEFWAKIHDTTPDSFPTLYEAALKDEEERAQARAVARAHTAAMASPYSRATVCSSSHTNI", "length": 327 }, "evidence": [ { "id": "A0A4X1VEP6", "url": "https://omabrowser.org/oma/group/A0A4X1VEP6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96M61-1", "protein_name": "Melanoma-associated antigen B18", "gene_name": "MAGEB18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRGQKSKLRAREKRHQARCENQDLGATQATVAEGESPSPAYLLFGDRPQNLPAAETPSIPEALQGAPSTTNAIAPVSCSSNEGASSQDEKSLGSSREAEGWKEDPLNKKVVSLVHFLLQKYETKEPITKGDMIKFVIRKDKCHFNEILKRASEHMELALGVDLKEVDPIRHYYAFFSKLDLTYDETTSDEEKIPKTGLLMIALGVIFLNGNRAPEEAVWEIMNMMGVYADRKHFLYGDPRKVMTKDLVQLKYLEYQQVPNSDPPRYEFLWGPRAHAETSKMKVLEFVAKIHDTVPSAFPSCYEEALRDEEQRTQARAAARAHTAAMANARSRTTSSSFSHAK", "length": 343 }, "evidence": [ { "id": "A0A4X1VEP6", "url": "https://omabrowser.org/oma/group/A0A4X1VEP6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP6" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 305, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 337, "end_pos": 339 }, { "start_pos": 52, "end_pos": 54 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VEY9-1", "uniprot_ac": "A0A4X1VEY9", "uniprot_id": "A0A4X1VEY9_PIG", "mass": { "chemical_mass": 14609.0, "monoisotopic_mass": 14609.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VEY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEY9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9", "locus": {} } ], "crossref": [ { "id": "A0A4X1VEY9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VEY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "DFACQTK", "url": "https://omabrowser.org/oma/group/DFACQTK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VEY9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWLLFLLLPGAYVVLCWSPTQDPSRRITFCTSCDEFVGKNCRKNLGSCQPKYPDFTCQTKEVYTHHFTGEYIYQYSILGCPRRCVQYIRITEWEKNVFLCCNSSYCNSLSVKDVPPFNPFISEN", "length": 125, "header": "tr|A0A4X1VEY9-1|A0A4X1VEY9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A4X1VEY9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VEY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9/entry", "sequence": { "sequence": "MDWLLFLLLPGAYVVLCWSPTQDPSRRITFCTSCDEFVGKNCRKNLGSCQPKYPDFTCQTKEVYTHHFTGEYIYQYSILGCPRRCVQYIRITEWEKNVFLCCNSSYCNSLSVKDVPPFNPFISEN", "length": 125, "header": "tr|A0A4X1VEY9-1|A0A4X1VEY9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A4X1VEY9-1" }, "locus": { "chromosome": "9", "start_pos": 52900415, "end_pos": 52898635, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040323.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040323.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050541.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050541.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEY9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VF00-1", "uniprot_ac": "A0A4X1VF00", "uniprot_id": "A0A4X1VF00_PIG", "mass": { "chemical_mass": 16879.0, "monoisotopic_mass": 16879.0 }, "refseq": { "ac": "XP_005657853", "name": "RNA-binding protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657853" }, "gene_names": [ { "name": "RBM3", "type": "recommended", "evidence": [ { "id": "A0A4X1VF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ] }, { "name": "RBM3", "type": "synonym", "evidence": [ { "id": "XP_005657853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657853" } ] } ], "protein_names": [ { "name": "RNA-binding protein 3", "type": "recommended", "evidence": [ { "id": "A0A4X1VF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 3", "type": "synonym", "evidence": [ { "id": "A0A4X1VF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005657853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657853" } ] } ], "function": [ { "annotation": "Cold-inducible mRNA binding protein that enhances global protein synthesis at both physiological and mild hypothermic temperatures. Reduces the relative abundance of microRNAs, when overexpressed. Enhances phosphorylation of translation initiation factors and active polysome formation.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00#function" }, { "database": "UniProtKB", "id": "ARBA00059942", "url": "https://www.uniprot.org/uniprotkb/ARBA00059942#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00", "locus": { "chromosome": "X", "start_pos": 42707577, "end_pos": 42704028, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021591", "url": "https://www.ensembl.org/id/ENSSSCG00000021591" } ] } } ], "crossref": [ { "id": "A0A4X1VF00", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VF00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021591", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021591", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12449", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12449", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627807", "url": "https://www.ncbi.nlm.nih.gov/gene/100627807", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VF00", "url": "https://www.orthodb.org/?gene=A0A4X1VF00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005657853", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657853", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B5F5", "url": "https://www.uniprot.org/uniprotkb/A0A287B5F5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5F5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5F5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VF00-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSSQGSYDRYSGGNYRDNYDN", "length": 155, "header": "tr|A0A4X1VF00-1|A0A4X1VF00_PIG Isoform 1 of RNA-binding protein 3 OS=Sus scrofa OX=9823 GN=RBM3 PE=1 SV=1 CANONICAL=A0A4X1VF00-1" }, "isoforms": [ { "isoform_ac": "A0A287B5F5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5F5/entry", "sequence": { "sequence": "MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGEGVEGSGRQSRAAWEATTGPA", "length": 90, "header": "tr|A0A287B5F5-1|A0A287B5F5_PIG Computationally mapped isoform of RNA binding motif protein 3 OS=Sus scrofa OX=9823 GN=RBM3 PE=1 SV=1 CANONICAL=A0A4X1VF00-1" }, "locus": { "chromosome": "X", "start_pos": 42705429, "end_pos": 42704771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045733.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045733.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051724.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051724.1" } ] } }, { "isoform_ac": "A0A4X1VF00-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00/entry", "sequence": { "sequence": "MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGARGRGYSRGGGDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSSQGSYDRYSGGNYRDNYDN", "length": 155, "header": "tr|A0A4X1VF00-1|A0A4X1VF00_PIG Isoform 1 of RNA-binding protein 3 OS=Sus scrofa OX=9823 GN=RBM3 PE=1 SV=1 CANONICAL=A0A4X1VF00-1" }, "locus": { "chromosome": "X", "start_pos": 42706666, "end_pos": 42704771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030983.3", "url": "https://www.ensembl.org/id/ENSSSCT00000030983.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019428.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019428.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "ribosomal large subunit binding", "id": "GO:0043023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043023", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF00", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF00" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 84, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VF55-1", "uniprot_ac": "A0A4X1VF55", "uniprot_id": "A0A4X1VF55_PIG", "mass": { "chemical_mass": 31830.0, "monoisotopic_mass": 31830.0 }, "refseq": { "ac": "XP_020918811", "name": "transmembrane protein 45B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918811" }, "gene_names": [ { "name": "TMEM45B", "type": "recommended", "evidence": [ { "id": "A0A4X1VF55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ] }, { "name": "TMEM45B", "type": "synonym", "evidence": [ { "id": "XP_020918811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918811" } ] } ], "protein_names": [ { "name": "Transmembrane protein 45B", "type": "recommended", "evidence": [ { "id": "A0A4X1VF55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 45B", "type": "synonym", "evidence": [ { "id": "XP_020918811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918811" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM45B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55", "locus": { "chromosome": "9", "start_pos": 56614182, "end_pos": 56584818, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015241", "url": "https://www.ensembl.org/id/ENSSSCG00000015241" } ] } } ], "crossref": [ { "id": "A0A4X1VF55", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VF55", "database": "AlphaFoldDB", "categories": [] }, { "id": "100516991", "url": "https://www.ncbi.nlm.nih.gov/gene/100516991", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516991", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516991", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APEWDQK", "url": "https://omabrowser.org/oma/group/APEWDQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VF55", "url": "https://www.orthodb.org/?gene=A0A4X1VF55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16007", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16007", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16007:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16007:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04819", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04819", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020918811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918811", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VF55-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANFKGHALPGSFFLIVGLWWSVKYPLKYFYQKAKSSQLTHYYQRLEITEAAIRTLFSVIGILAEQFVPDGPHLHLSHDNNWVKLMNWQHSTMYLFFAVSGIMDMLTCLLTHIPLGLDRLVMAVAAFNEGFLFYYHVHNRPPLDQHIHSLLLYIVFGGALGLVLEVILRDNIVLELFRTSLIILQGTWFWQIGFVLYPPFGAPEWDQKDHDNIMFITMCFCWHYLAALCIVAISYSLVFCILTRAKRPGEREIIGIQKLKSGHTYQTALLNGSDEE", "length": 276, "header": "tr|A0A4X1VF55-1|A0A4X1VF55_PIG Isoform 1 of Transmembrane protein 45B OS=Sus scrofa OX=9823 GN=TMEM45B PE=1 SV=1 CANONICAL=A0A4X1VF55-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VF55-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55/entry", "sequence": { "sequence": "MANFKGHALPGSFFLIVGLWWSVKYPLKYFYQKAKSSQLTHYYQRLEITEAAIRTLFSVIGILAEQFVPDGPHLHLSHDNNWVKLMNWQHSTMYLFFAVSGIMDMLTCLLTHIPLGLDRLVMAVAAFNEGFLFYYHVHNRPPLDQHIHSLLLYIVFGGALGLVLEVILRDNIVLELFRTSLIILQGTWFWQIGFVLYPPFGAPEWDQKDHDNIMFITMCFCWHYLAALCIVAISYSLVFCILTRAKRPGEREIIGIQKLKSGHTYQTALLNGSDEE", "length": 276, "header": "tr|A0A4X1VF55-1|A0A4X1VF55_PIG Isoform 1 of Transmembrane protein 45B OS=Sus scrofa OX=9823 GN=TMEM45B PE=1 SV=1 CANONICAL=A0A4X1VF55-1" }, "locus": { "chromosome": "9", "start_pos": 56613446, "end_pos": 56608172, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016610.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016610.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016165.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016165.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516991", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516991", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1P8APW5-1", "protein_name": "Plant viral-response family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGSFKGHALPGTLFLVVGVWHIWSSVVRYISNPSSFRVRVWHPVPGFNDRIKYLELYVVTIGSFIDLCIEFLYSTHLKFFVNGVLNPSHMNDFEHSGMLLMFFILGFIALLSEKTRLLPLPQEALCLIAATAFTAECLLFFFHSTSHKGLEGYYHLLLVFLIGLCVISSIAGAICPTSFPVDLCNGIAMTLQGLWFYQTAFTLYGPMMPQGCSLKQNSVVCRSVDSEVSGEFLANFQLFSLVLAVLVCVVGSYVFAASRFGVSR", "length": 264 }, "evidence": [ { "id": "A0A4X1VF55", "url": "https://omabrowser.org/oma/group/A0A4X1VF55/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "G3GTY1-1", "protein_name": "Transmembrane protein 45B", "gene_name": "Tmem45b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MANFKGHALPGSFFLIFGLWWSVKYPLKYFHQKGLKKNRLSQQQQRIEMIEGAIKTLFAVVGILAEQFVPDGPHLHLYHENQWTKLMNWQHSTMYLFFGISGIIDMLTYLYFNIVPLGVDRLVLAMAVFNEGFLFYFHVHNRPPLDQHIHSLLLFGLFGASVSIFMEVIFRDNIVLELFRTSLLILQGTWFWQIGFVLFPPFGTPEWDQKDMDNVMFITMCFCWHYLVALFITGINYSLVYCFLTRVKRHAEGEIIGIQKLKSDHTYQSALLSGSDEE", "length": 278 }, "evidence": [ { "id": "A0A4X1VF55", "url": "https://omabrowser.org/oma/group/A0A4X1VF55/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q96B21-1", "protein_name": "Transmembrane protein 45B", "gene_name": "TMEM45B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANFKGHALPGSFFLIIGLCWSVKYPLKYFSHTRKNSPLHYYQRLEIVEAAIRTLFSVTGILAEQFVPDGPHLHLYHENHWIKLMNWQHSTMYLFFAVSGIVDMLTYLVSHVPLGVDRLVMAVAVFMEGFLFYYHVHNRPPLDQHIHSLLLYALFGGCVSISLEVIFRDHIVLELFRTSLIILQGTWFWQIGFVLFPPFGTPEWDQKDDANLMFITMCFCWHYLAALSIVAVNYSLVYCLLTRMKRHGRGEIIGIQKLNSDDTYQTALLSGSDEE", "length": 275 }, "evidence": [ { "id": "A0A4X1VF55", "url": "https://omabrowser.org/oma/group/A0A4X1VF55/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to pain", "id": "GO:0048265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048265", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF55" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 271, "end_pos": 273 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VF91-1", "uniprot_ac": "A0A4X1VF91", "uniprot_id": "A0A4X1VF91_PIG", "mass": { "chemical_mass": 16226.0, "monoisotopic_mass": 16226.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Splicing factor 3b subunit 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91", "locus": {} } ], "crossref": [ { "id": "A0A4X1VF91", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VF91", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR038737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12097", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12097", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VF91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADVCRSAQGT", "length": 146, "header": "tr|A0A4X1VF91-1|A0A4X1VF91_PIG Isoform 1 of Splicing factor 3b subunit 1 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A4X1VF91-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91/entry", "sequence": { "sequence": "MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADVCRSAQGT", "length": 146, "header": "tr|A0A4X1VF91-1|A0A4X1VF91_PIG Isoform 1 of Splicing factor 3b subunit 1 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A4X1VF91-1" }, "locus": { "chromosome": "15", "start_pos": 101319789, "end_pos": 101300381, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059157.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059157.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040230.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040230.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spliceosomal complex assembly", "id": "GO:0000245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000245", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VF91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VF91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VFN6-1", "uniprot_ac": "A0A4X1VFN6", "uniprot_id": "A0A4X1VFN6_PIG", "mass": { "chemical_mass": 12807.0, "monoisotopic_mass": 12807.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VFN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VFN6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6", "locus": {} } ], "crossref": [ { "id": "A0A4X1VFN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VFN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VFN6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VFN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPQEEKPIFEEENKESGGGAEVNLVKDFNFFKNYNIQCKGLGMIRILILSWGIFLKALSKSSPLKSYKVPSTGRQGQVQIKDTIFLIGKDPGKFAEVRVLFTMNEELKLEKH", "length": 113, "header": "tr|A0A4X1VFN6-1|A0A4X1VFN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VFN6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VFN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6/entry", "sequence": { "sequence": "MAPQEEKPIFEEENKESGGGAEVNLVKDFNFFKNYNIQCKGLGMIRILILSWGIFLKALSKSSPLKSYKVPSTGRQGQVQIKDTIFLIGKDPGKFAEVRVLFTMNEELKLEKH", "length": 113, "header": "tr|A0A4X1VFN6-1|A0A4X1VFN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VFN6-1" }, "locus": { "chromosome": "X", "start_pos": 28189146, "end_pos": 28188723, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085754.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085754.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070742.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070742.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VFN6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VG55-1", "uniprot_ac": "A0A4X1VG55", "uniprot_id": "A0A4X1VG55_PIG", "mass": { "chemical_mass": 24802.0, "monoisotopic_mass": 24802.0 }, "refseq": {}, "gene_names": [ { "name": "C19orf38", "type": "recommended", "evidence": [ { "id": "A0A4X1VG55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55" } ] } ], "protein_names": [ { "name": "Chromosome 2 C19orf38 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1VG55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C19orf38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55", "locus": { "chromosome": "2", "start_pos": 69600756, "end_pos": 69585883, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013632", "url": "https://www.ensembl.org/id/ENSSSCG00000013632" } ] } } ], "crossref": [ { "id": "A0A4X1VG55", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VG55", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627549", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627549", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NFLGANF", "url": "https://omabrowser.org/oma/group/NFLGANF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VG55", "url": "https://www.orthodb.org/?gene=A0A4X1VG55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36859:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36859:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17737", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17737", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VG55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VG55-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPWTVLLFAAGSLAIPAPSIMLVPPHPSSQEDPIHISCVAPQEFPGANFTLYQGGQVVQQEQAPVDQLKVTFNLSGGSQEAPGRPFYCQYGVLGEHRQPQLSDLSEPMHISFPVPTWILALSLSLAGAFLLLAGLVIIAMVVRKVKLKKLQKKRERESCWAQVNFPATDMSFDNSLFTISKMTSEEDAATVDAPSGSNKTPDNSGPWKRTNSTSSSPEPPEFSTFRAC", "length": 228, "header": "tr|A0A4X1VG55-1|A0A4X1VG55_PIG Isoform 1 of Chromosome 2 C19orf38 homolog OS=Sus scrofa OX=9823 GN=C19orf38 PE=4 SV=1 CANONICAL=A0A4X1VG55-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VG55-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55/entry", "sequence": { "sequence": "MPWTVLLFAAGSLAIPAPSIMLVPPHPSSQEDPIHISCVAPQEFPGANFTLYQGGQVVQQEQAPVDQLKVTFNLSGGSQEAPGRPFYCQYGVLGEHRQPQLSDLSEPMHISFPVPTWILALSLSLAGAFLLLAGLVIIAMVVRKVKLKKLQKKRERESCWAQVNFPATDMSFDNSLFTISKMTSEEDAATVDAPSGSNKTPDNSGPWKRTNSTSSSPEPPEFSTFRAC", "length": 228, "header": "tr|A0A4X1VG55-1|A0A4X1VG55_PIG Isoform 1 of Chromosome 2 C19orf38 homolog OS=Sus scrofa OX=9823 GN=C19orf38 PE=4 SV=1 CANONICAL=A0A4X1VG55-1" }, "locus": { "chromosome": "2", "start_pos": 69600286, "end_pos": 69585980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014887.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014887.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014486.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014486.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QL30-1", "protein_name": "Protein HIDE1", "gene_name": "CUNH19orf38", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGREMPWTILLFASGSLAIPAPSIFLVPPYPNSQDDPIFISCTAPEDFLGANFTLFRGREVAQLLQAPSDQPGVTFNVTSGGSEAAGGIFRCQYGVIGEHSQPQLSDLSQPVQISFPVPTWIMVLSLSLAGAVLLLTGLVAVAVVVRKAKIKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDLVATLDMHPCNSGPQKTPTSTPSSPELPEFSTFRACQ", "length": 228 }, "evidence": [ { "id": "A0A4X1VG55", "url": "https://omabrowser.org/oma/group/A0A4X1VG55/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A8MVS5-1", "protein_name": "Protein HIDE1", "gene_name": "HIDE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPWTILLFAAGSLAIPAPSIRLVPPYPSSQEDPIHIACMAPGNFPGANFTLYRGGQVVQLLQAPTDQRGVTFNLSGGSSKAPGGPFHCQYGVLGELNQSQLSDLSEPVNVSFPVPTWILVLSLSLAGALFLLAGLVAVALVVRKVKLRNLQKKRDRESCWAQINFDSTDMSFDNSLFTVSAKTMPEEDPATLDDHSGTTATPSNSRTRKRPTSTSSSPETPEFSTFRACQ", "length": 230 }, "evidence": [ { "id": "A0A4X1VG55", "url": "https://omabrowser.org/oma/group/A0A4X1VG55/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZMI7-1", "protein_name": "Similar to human chromosome 19 open reading frame 38", "gene_name": "C8h19orf38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGEMLSQTYMGGEMPWTILLFASGSLAIPAPSIFLVPPFPSSREDPIYLSCTAPKDILGANFTLFRGGEAVQLLQAPSDQHSVTFNVTGSGSGGSNEAAGGNFRCQYGVLGEHSEPQLSDFSQEVQVSFPVPTWILALSLSLAGAVLLSGLVVIAVLVRKAKAKNLQMQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDSMVTLDSGPRKRPTSASFSPEPPEFSTFRACQ", "length": 236 }, "evidence": [ { "id": "A0A4X1VG55", "url": "https://omabrowser.org/oma/group/A0A4X1VG55/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BKF5-1", "protein_name": "Chromosome 7 C19orf38 homolog", "gene_name": "C7H19orf38", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPWIVLLFAAGSLAIPAPSIMLVPPHPSSKEDPIHISCMAPRGFPGANFTLYQDGEVVELLKAPKDQLRVIFNLSGGSREVRGGPFCCQYSVLGENRQPQLSNLSEPVHVSFPVPTWILALSLSLAGAALLLAGLVIIALIIRKVKVKNLNKRRERESCWVNIATTDMSFDNSLFTIMKMTSEEDAANLDAPSGSTETPGPRKRPTSTSSSPEPPEFSTFRAC", "length": 223 }, "evidence": [ { "id": "A0A4X1VG55", "url": "https://omabrowser.org/oma/group/A0A4X1VG55/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q75VT8-1", "protein_name": "Protein HIDE1", "gene_name": "Hide1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPWTILLFASGSLAIPAPSISLVPPYPSSHEDPIYISCTAPGDILGANFTLFRGGEVVQLLQAPSDRPDVTFNVTGGGSGGGGEAAGGNFCCQYGVMGEHSQPQLSDFSQQVQVSFPVPTWILALSLSLAGAVLFSGLVAITVLVRKAKAKNLQKQRERESCWAQINFTNTDMSFDNSLFAISTKMTQEDSVATLDSGPRKRPTSASSSPEPPEFSTFRACQ", "length": 222 }, "evidence": [ { "id": "A0A4X1VG55", "url": "https://omabrowser.org/oma/group/A0A4X1VG55/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VG55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG55" }, { "id": "PF17737", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17737" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C19orf38 Ig", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 112, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 198, "end_pos": 200 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VG77-1", "uniprot_ac": "A0A4X1VG77", "uniprot_id": "A0A4X1VG77_PIG", "mass": { "chemical_mass": 92591.0, "monoisotopic_mass": 92591.0 }, "refseq": {}, "gene_names": [ { "name": "PNISR", "type": "recommended", "evidence": [ { "id": "A0A4X1VG77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77" } ] } ], "protein_names": [ { "name": "PNN interacting serine and arginine rich protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VG77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PNISR", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77", "locus": { "chromosome": "1", "start_pos": 66350969, "end_pos": 66381454, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037594", "url": "https://www.ensembl.org/id/ENSSSCG00000037594" } ] } } ], "crossref": [ { "id": "A0A4X1VG77", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VG77", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037594", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037594", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31518", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31518", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15996", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15996", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BKZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287BKZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN97", "url": "https://www.uniprot.org/uniprotkb/A0A287BN97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VG77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VG77-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQNMVEQPPGMMPNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQRSKFDSDEEDEDTENVEAASSGKVTRSPSPIPQEDQSEPEMTEEEKEYQMMLLTKMLLTEILLDVTDEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSVLEAREADGDVVNEKKRTPNETMSVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTVKARRSRSRSYSRRIKIESSRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRSSRSRSRDRRKIDDQRGNLSGSSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSMEKSQRSGKKASRKHKSKSRSR", "length": 805, "header": "tr|A0A4X1VG77-1|A0A4X1VG77_PIG Isoform 1 of PNN interacting serine and arginine rich protein OS=Sus scrofa OX=9823 GN=PNISR PE=4 SV=1 CANONICAL=A0A4X1VG77-1" }, "isoforms": [ { "isoform_ac": "A0A287BKZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKZ5/entry", "sequence": { "sequence": "MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQNMVEQPPGMMPNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQRSKFMLLTKMLLTEILLDVTDEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSVLEAREADGDVVNEKKRTPNETMSVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTVKARRSRSRSYSRRIKIESSRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRSSRSRSRDRRKIDDQRGNLSGSSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSMEKSQRSGKKASRKHKSKSRSR", "length": 759, "header": "tr|A0A287BKZ5-1|A0A287BKZ5_PIG Computationally mapped isoform of PNN interacting serine and arginine rich protein OS=Sus scrofa OX=9823 GN=PNISR PE=4 SV=3 CANONICAL=A0A4X1VG77-1" }, "locus": { "chromosome": "1", "start_pos": 66370022, "end_pos": 66351565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060237.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060237.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057182.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057182.3" } ] } }, { "isoform_ac": "A0A287BN97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN97/entry", "sequence": { "sequence": "MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQNMVEQPPGMMPNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQRSKFMLLTKMLLTEILLDVTDEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSVLEAREADGDVVNEKKRTPNETMSVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTVKARRSRSRSYSRRIKIESSRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRSSRSRSRDRRKIDDQRGNLSGSSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSMEKSQRSGKKASRKHKSKSRSRSTTPPRRKR", "length": 768, "header": "tr|A0A287BN97-1|A0A287BN97_PIG Computationally mapped isoform of PNN interacting serine and arginine rich protein OS=Sus scrofa OX=9823 GN=PNISR PE=4 SV=3 CANONICAL=A0A4X1VG77-1" }, "locus": { "chromosome": "1", "start_pos": 66370022, "end_pos": 66351293, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048318.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048318.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057915.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057915.3" } ] } }, { "isoform_ac": "A0A4X1VG77-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77/entry", "sequence": { "sequence": "MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQNMVEQPPGMMPNGQDMSTMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQRSPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGPRLPQRSKFDSDEEDEDTENVEAASSGKVTRSPSPIPQEDQSEPEMTEEEKEYQMMLLTKMLLTEILLDVTDEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIRQKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSVLEAREADGDVVNEKKRTPNETMSVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTVKARRSRSRSYSRRIKIESSRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNRSSRSRSRDRRKIDDQRGNLSGSSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSMEKSQRSGKKASRKHKSKSRSR", "length": 805, "header": "tr|A0A4X1VG77-1|A0A4X1VG77_PIG Isoform 1 of PNN interacting serine and arginine rich protein OS=Sus scrofa OX=9823 GN=PNISR PE=4 SV=1 CANONICAL=A0A4X1VG77-1" }, "locus": { "chromosome": "1", "start_pos": 66370022, "end_pos": 66351565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028650.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028650.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024989.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024989.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 113, "start_aa": "Thr", "end_pos": 113, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr113", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77" } ], "pmid": "" }, { "name": "presynaptic active zone", "id": "GO:0048786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048786", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 648, "end_pos": 650, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 113 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 487, "end_pos": 489 }, { "start_pos": 609, "end_pos": 611 }, { "start_pos": 629, "end_pos": 631 }, { "start_pos": 648, "end_pos": 650 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VGA9-1", "uniprot_ac": "A0A4X1VGA9", "uniprot_id": "A0A4X1VGA9_PIG", "mass": { "chemical_mass": 124964.0, "monoisotopic_mass": 124964.0 }, "refseq": {}, "gene_names": [ { "name": "MYO1F", "type": "recommended", "evidence": [ { "id": "A0A4X1VGA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ] } ], "protein_names": [ { "name": "Myosin IF", "type": "synonym", "evidence": [ { "id": "A0A4X1VGA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYO1F", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9", "locus": { "chromosome": "2", "start_pos": 70792936, "end_pos": 70753138, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013604", "url": "https://www.ensembl.org/id/ENSSSCG00000013604" } ] } } ], "crossref": [ { "id": "A0A4X1VGA9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VGA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013604", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013604", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11827", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11827", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PPEEYQM", "url": "https://omabrowser.org/oma/group/PPEEYQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13140:SF663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13140:SF663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VGA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BUG4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BUG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BUG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BUG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D3H3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D3H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D3H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D3H3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVGNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYKVDGTDDRSDFSETLNAMQVIGIPPNIQQLVLQLVAGILHLGNISFCEDGNYARVESADLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSSGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDVEKKGRPSTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVNKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVREVLKKKLEIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEAVRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGSGDVALLKASGRALTVSVGDGLPKSSKPTRKGMAQGKPRRFAQAPTRAAPGPPRGLDRNGVPPSARGSHLPLEITSAGGSQRPPRGPPSSALGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSVGQRPVPGVGRPKPQPRAHGPRCRALYQYVGQDVDELSFNVNEVIEILLEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1098, "header": "tr|A0A4X1VGA9-1|A0A4X1VGA9_PIG Isoform 1 of Myosin IF OS=Sus scrofa OX=9823 GN=MYO1F PE=3 SV=1 CANONICAL=A0A4X1VGA9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VGA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9/entry", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVGNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYKVDGTDDRSDFSETLNAMQVIGIPPNIQQLVLQLVAGILHLGNISFCEDGNYARVESADLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSSGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDVEKKGRPSTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVNKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVREVLKKKLEIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEAVRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGSGDVALLKASGRALTVSVGDGLPKSSKPTRKGMAQGKPRRFAQAPTRAAPGPPRGLDRNGVPPSARGSHLPLEITSAGGSQRPPRGPPSSALGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSVGQRPVPGVGRPKPQPRAHGPRCRALYQYVGQDVDELSFNVNEVIEILLEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1098, "header": "tr|A0A4X1VGA9-1|A0A4X1VGA9_PIG Isoform 1 of Myosin IF OS=Sus scrofa OX=9823 GN=MYO1F PE=3 SV=1 CANONICAL=A0A4X1VGA9-1" }, "locus": { "chromosome": "2", "start_pos": 70792555, "end_pos": 70753320, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014859.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014859.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014458.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014458.3" } ] } }, { "isoform_ac": "A0A5G2R1L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L5/entry", "sequence": { "sequence": "MVAGLLGLLVVTAVCCRALAGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVGNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYKVDGTDDRSDFSETLNAMQVIGIPPNIQQLVLQLVAGILHLGNISFCEDGNYARVESADLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSSGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDVEKKGRPSTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVNKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVREVLKKKLEIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEAVRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGSGDVALLKASGRALTVSVGDGLPKSSKPTRKGMAQGKPRRFAQAPTRAAPGPPRGLDRNGVPPSARGSHLPLEITSAGGSQRPPRGPPSSALGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSVGQRPVPGVGRPKPQPRAHGPRCRALYQYVGQDVDELSFNVNEVIEILLEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1117, "header": "tr|A0A5G2R1L5-1|A0A5G2R1L5_PIG Computationally mapped isoform of Myosin IF OS=Sus scrofa OX=9823 GN=MYO1F PE=3 SV=2 CANONICAL=A0A4X1VGA9-1" }, "locus": { "chromosome": "2", "start_pos": 70792555, "end_pos": 70754878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089267.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089267.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071009.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071009.2" } ] } }, { "isoform_ac": "A0A8D1BUG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BUG4/entry", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVGNLRKRFMDDYIFNQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYKVDGTDDRSDFSETLNAMQVIGIPPNIQQLVLQLVAGILHLGNISFCEDGNYARVESADLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSSGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDVEKKGRPSTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVNKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVREVLKKKLEIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEAVRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGSGDVALLKASGRALTVSVGDGLPKSSKPTRKGMAQGKPRRFAQAPTRAAPGPPRGLDRNGVPPSARGSHLPLEITSAGGSQRPPRGPPSSALGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSVGQRPVPGVGRPKPQPRAHGPRCRALYQYVGQDVDELSFNVNEVIEILLEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1043, "header": "tr|A0A8D1BUG4-1|A0A8D1BUG4_PIG Computationally mapped isoform of Myosin IF OS=Sus scrofa OX=9823 GN=MYO1F PE=3 SV=1 CANONICAL=A0A4X1VGA9-1" }, "locus": { "chromosome": "2", "start_pos": 70792555, "end_pos": 70753320, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076762.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076762.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069835.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069835.1" } ] } }, { "isoform_ac": "A0A8D1D3H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D3H3/entry", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVGNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYKVDGTDDRSDFSETLNAMQVIGIPPNIQQLVLQLVAGILHLGNISFCEDGNYARVESADLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSSGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDVEKKGRPSTAGSKIKKQANDLVSTLMKCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVNKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVREVLKKKLEIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEAVRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGSGDVALLKASGRALTVSVGDGLPKSSKPTRKGMAQGKPRRFAQAPTRAAPGPPRGLDRNGVPPSARGSHLPLEITSAGGSQRPPRGPPSSALGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSVGQRPVPGVGRPKPQPRAHGPRCRALYQYVGQDVDELSFNVNEVIEILLEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1069, "header": "tr|A0A8D1D3H3-1|A0A8D1D3H3_PIG Computationally mapped isoform of Myosin IF OS=Sus scrofa OX=9823 GN=MYO1F PE=3 SV=1 CANONICAL=A0A4X1VGA9-1" }, "locus": { "chromosome": "2", "start_pos": 70792555, "end_pos": 70753320, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074392.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074392.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059858.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059858.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "B0S6F2-1", "protein_name": "Osteoclast-stimulating factor 1", "gene_name": "myo1f", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGSKYHWQSQNVKQSGVDDMVLLSKITEDAIVENLKKRFLDDYIFTYIGPVLISVNPFKQMPYFTDREIELYQGAAQYENPPHIYALTDNMYRNMMIDSENQCVIISGESGAGKTVAAKYIMGYISKVSGGGSKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVSQNENERNFHIFYQLIDGCTPQQKEGLGIMTPDYYYYLNQSGTYKVDGTNDSKDFQETMEAMQVIGIPEMHQTLALQIVAGILHLGSINFIEVGNYGQVESTDLLAFPAYLLGIDQNRLQEKLTSRIMDSKWAGKTESINVTLNLEQARHTRDALAKALYTRLFDYLVEEINKAMQKPIEELSVGVLDIYGFEIFQRNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIKWTPIEYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATKDGADMTLLQKLQNAVGTHDHFNSWNSGFIIHHYAGKVSYDINGFCERNRDVLFPDLIELMQSSQYDFIQSLFPENLNTDKKGRPTTAGSKIKRQANELVSTLMKCTPHYIRCIKPNETKRPKDWEESRARHQVEYLGLRENIRVRRAGFAYRRIFPKFLHRYAILTAETWPCWRGAEQQGVLHLLRTVNMETDQYQMGRSKIFIKNPESLFLLEEMRERKFDTFARTIQKAWRKYIARRKYEQMREEASDILYNSKERRRNSINRNFVGDYLGMEDRPELRQFMAKRERVDFADSVNKFDRRFKSIKRDLILSPKSIYLIGREKIKKGPEKGQIKEVLKRRLDISGIRSVSLSTRQDDFFILHETEYDSLLESMFKTEFLTLLCKRYEEQTRSKLTLSFSDRLQFNVKKEGWGGGSTRMVVFQRGQADEAVIKAGGKTLTVSVGDGLPKTSKPTRKGMPQSHGGRSQPQHRGGHQNGAAQFHRGGGQQQQQKEVTYSMPVRHNPPPSNPLKLGSQKNQRGSRPVQNQSTNLDFLNVPDQGMSGMQRKKSISQRPPPAPSSRPKPQARPQGPRCRALYQYFGQDVDEISFEVNDIIELLSEDQSGWWRGRIRGKEGLFPGNYVEKI", "length": 1095 }, "evidence": [ { "id": "A0A4X1VGA9", "url": "https://omabrowser.org/oma/group/A0A4X1VGA9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4A7X9-1", "protein_name": "Myosin IF", "gene_name": "Myo1f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIVSNLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGDKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQQQNLGLMTPDYYYYLNQSDTYKVEGTDDRSDFNETLNAMQVIGIPTSVQQLVLQLVAGILHLGNISFCEEGNYARVESVDLLAFPAYLLGIDSGRLQEKLTSRKMDSKWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIENKLNPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQSSDQAFLRMLFPEKLDVDKKGRPSTAGSKIKKQANDLVSTLKKCTPHYIRCIKPNETKRPRDWEESRVKHQVEYLGLRENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHIAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLAKRERVDFADSVTKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGLVREVLKKKLEIQALRGVSLSTRQDDFFILQEEAADSFLESIFKTEFVSLLCKRFEEAARRPLPLTFSDMLQFRVKKEGWGGGSTRNVTFSRGTGDLAVLKAGSRALTISIGDGLPKSTKPTRKGLAQGRPRRSAQAPTRAAPGPPRGLNRNGVPPSSQVRSLPMEITSGRSSQRPPRGPPSSTLGASRRPRARPPSEHNTEFLNVPDQGVAGMQRKRSIGQRPVPGVGRPKPQPRTHGPRCRALYQYIGQDVDELSFNVNEVIEILMEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1098 }, "evidence": [ { "id": "A0A4X1VGA9", "url": "https://omabrowser.org/oma/group/A0A4X1VGA9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O00160-1", "protein_name": "Unconventional myosin-If", "gene_name": "MYO1F", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIAANLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYQVDGTDDRSDFGETLSAMQVIGIPPSIQQLVLQLVAGILHLGNISFCEDGNYARVESVDLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESINVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIQYFNNKVVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDGDKKGRPSTAGSKIKKQANDLVATLMRCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFAKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEVRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVTKYDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVCEVLKKKVDIQALRGVSLSTRQDDFFILQEDAADSFLESVFKTEFVSLLCKRFEEATRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGFGDLAVLKVGGRTLTVSVGDGLPKSSKPTRKGMAKGKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPSTSLGASRRPRARPPSEHNTEFLNVPDQGMAGMQRKRSVGQRPVPGVGRPKPQPRTHGPRCRALYQYVGQDVDELSFNVNEVIEILMEDPSGWWKGRLHGQEGLFPGNYVEKI", "length": 1098 }, "evidence": [ { "id": "A0A4X1VGA9", "url": "https://omabrowser.org/oma/group/A0A4X1VGA9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P34109-1", "protein_name": "Myosin ID heavy chain", "gene_name": "myoD", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAYKSQHGVDDMVMLSKIANDSILDNLKKRYGGDVIYTYIGNVLISVNPFKQIKNLYSERNLLEYRGKFRYELPPHAYAVADDMYRSMYAEGQSQCVIISGESGAGKTEAAKLIMQYIAAVSGKGADVSRVKDVILESNPLLEAFGNAKTLRNNNSSRFGKYMEVQFNGIGDPEGGRVTNYLLEKSRVVYQTKGERNFHIFYQLLSGANQQLKSELRLDTPDKFNYLSASGCYTVDGVDDSGEFQDVCKAMKVIGLTDSEQKEVFRLVAAILYLGNVGFKNNAKDEAAIDQQSKKALENFAFLMQTDVSSCEKALCFRTISTGTQGRSARVSTYACPQNSEGAYYSRDALAKALYSRLFDWIVGRVNSALGYKQNSQSLMIGILDIYGFEIFEKNGFEQMVINYVNERLQQIFIELTLKTEQEEYFNEGIQWEQIDYFNNKICCDLIESKKPAGILTILDDVCNFPKGDDQKFLDRLKESFSSHAHFQSAAQSSSSFTIKHYAGDVEYCAEGFVDKNKDLLFNDLVELAACTTSKLIPQLFPEINCEKDKRKPTTAGFKIKESIGALVKALSACTPHYIRCIKPNGNKRANDFDTSLVMHQVKYLGLLENVRIRRAGYAYRQTYDKFFYRYRVCCKETWPNWTGGFESGVETILKSMDLEPKQYSKGKTKIFIRAPETVFNLEELRERKVFTYANKLQRFFLRFTLMSYYYSIQKGAADSMKSNKERRRLSIERPYQGDYINYRENFELKDIVKKNGNEKIMFTHAVNKYDRRSRCQRRVLLLSDTAIYFIATEKNKDKEDRKKRPWIYVQKRRLLLAGITSVELSKLSDGFVVLKTMNEHDQIFECRRKTEFLGTLIKAYKTGTLRINYNNSIGVAIKASKQGGKGKERIILFEKGIKPGESVFKGTKVSTPSDGLPADTVPNLTPPESLPVVSIPIYKPAMNAKNAPQNSGGPASNVKPSAKALYDFDAESSMELSFKEGDILTVLDQSSGDWWDAELKGRRGKVPSNYLQLIKNAAPPRAGGPPVPTGNRAPTTTTTSGGSTRGGFNNGPSTAPSGRGAAPPSSRGGMAPRGGSVAPPSSRGGIAPRGGIAPRGGMAPRGGMAPRV", "length": 1109 }, "evidence": [ { "id": "A0A4X1VGA9", "url": "https://omabrowser.org/oma/group/A0A4X1VGA9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P70248-1", "protein_name": "Unconventional myosin-If", "gene_name": "Myo1f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSKERFHWQSHNVKQSGVDDMVLLSQITEDAIVRNLHKRFMDDYIFTYIGSVLISVNPFKQMPYFTDREIDLYQGAVQYEEPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGDKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIYYQLLEGASQEQQQNLGIMSQDYYYYLNQSDTYKVEGTDDRSDFSETLSAMQVMGFRQACQQLVLQLVAGILHLGNISFCEEGNYARVESVDSLAFPAYLLGIDSGRLQEKLTSRKMDSKWGGRSESIDVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTHEHFNSWSAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQSSDQDFLRMLFPEKLNIDKKGRPSTAGSKIKKQANDLVSTLKKCTPHYIRCIKPNETKRPRDWEESRVKHQVEYLGLRENIRVRRAGFAYRRQFSKFLQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGNYLGLEERPELRQFLAKRERVDFADSVTKYDRRFKPIKRDLILTPKCVYVIGTEKVKRGPEKGLVREVLKKKLDIQALRGVSLSTRQDDFFILQEEAADTFLESIFKTEFVSLLCKRFEEAARRPLPLTFQDILQFRVKKKGWGGGGTRNVTFSAGQVNLAVLKAGGKTLTISLGDGLPKNSKPTRKGLAQGKPRRSAQAPTRAVPWASQGLNRNGATLFPRGEGPYTLEIYIWPQEFPEASTAIHLQPQDASRRPRARPPSEHSTEFLNVPDQGVAGMQRKRSIGQRPVPASRPKPQPRTHGPRCRALYQYIGQDVDELSFNVNEVIEILIEDSSGWWKGRLHGQEGLFPGNYVEKI", "length": 1099 }, "evidence": [ { "id": "A0A4X1VGA9", "url": "https://omabrowser.org/oma/group/A0A4X1VGA9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "microfilament motor activity", "id": "GO:0000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000146", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "cytoskeletal motor activity", "id": "GO:0003774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003774", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "microvillus", "id": "GO:0005902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VGA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" }, { "id": "PS51456", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin motor", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 690, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VGA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 1041, "end_pos": 1098, "start_aa": "Ala", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VGA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGA9" }, { "id": "PS51757", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51757" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TH1", "eco_id": "ECO_0000259", "start_pos": 728, "end_pos": 917, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VGD9-1", "uniprot_ac": "A0A4X1VGD9", "uniprot_id": "A0A4X1VGD9_PIG", "mass": { "chemical_mass": 7111.0, "monoisotopic_mass": 7111.0 }, "refseq": {}, "gene_names": [ { "name": "NBDY", "type": "recommended", "evidence": [ { "id": "A0A4X1VGD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ] } ], "protein_names": [ { "name": "Negative regulator of P-body association", "type": "synonym", "evidence": [ { "id": "A0A4X1VGD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NBDY", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9", "locus": { "chromosome": "X", "start_pos": 49157845, "end_pos": 49157639, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000053779", "url": "https://www.ensembl.org/id/ENSSSCG00000053779" } ] } } ], "crossref": [ { "id": "A0A4X1VGD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VGD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR047852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DQPCVSG", "url": "https://omabrowser.org/oma/group/DQPCVSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VGD9", "url": "https://www.orthodb.org/?gene=A0A4X1VGD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF21949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21949", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VGD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDQPCASGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTPNGGSTPLPSAPTPASPGLKSHPPPPEK", "length": 68, "header": "tr|A0A4X1VGD9-1|A0A4X1VGD9_PIG Isoform 1 of Negative regulator of P-body association OS=Sus scrofa OX=9823 GN=NBDY PE=4 SV=1 CANONICAL=A0A4X1VGD9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VGD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9/entry", "sequence": { "sequence": "MGDQPCASGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTPNGGSTPLPSAPTPASPGLKSHPPPPEK", "length": 68, "header": "tr|A0A4X1VGD9-1|A0A4X1VGD9_PIG Isoform 1 of Negative regulator of P-body association OS=Sus scrofa OX=9823 GN=NBDY PE=4 SV=1 CANONICAL=A0A4X1VGD9-1" }, "locus": { "chromosome": "X", "start_pos": 49157842, "end_pos": 49157639, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099571.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099571.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080290.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080290.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 53, "start_aa": "Thr", "end_pos": 53, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr53", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0N4SUI7-1", "protein_name": "Negative regulator of P-body association", "gene_name": "Nbdy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDQPCASGRSTLPPGNTREPKPPKKRCVLAPRWDYPEGTPSGGSSTLPSAPPPASAGLKSHPPPPEK", "length": 68 }, "evidence": [ { "id": "A0A4X1VGD9", "url": "https://omabrowser.org/oma/group/A0A4X1VGD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0U1RRE5-1", "protein_name": "Negative regulator of P-body association", "gene_name": "NBDY", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDQPCASGRSTLPPGNAREAKPPKKRCLLAPRWDYPEGTPNGGSTTLPSAPPPASAGLKSHPPPPEK", "length": 68 }, "evidence": [ { "id": "A0A4X1VGD9", "url": "https://omabrowser.org/oma/group/A0A4X1VGD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A3Q1LS02-1", "protein_name": "Negative regulator of P-body association", "gene_name": "NBDY", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGDQPCTSGRSTLPPGNTRETKPPKKRCLLAPRWDYPEGTANGGNTTLPSTPPPASPGLKSHPPPPEK", "length": 68 }, "evidence": [ { "id": "A0A4X1VGD9", "url": "https://omabrowser.org/oma/group/A0A4X1VGD9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2LJR5-1", "protein_name": "Negative regulator of P-body association", "gene_name": "Nbdy", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGDQPCASGRSTLPPGNTREPKPPKKRCLLAPRWDYPEGTPSGGSTTLPSAPPPASTGLKSHPPPPEK", "length": 68 }, "evidence": [ { "id": "A0A4X1VGD9", "url": "https://omabrowser.org/oma/group/A0A4X1VGD9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process", "id": "GO:0000956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000956", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ], "pmid": "" }, { "name": "negative regulation of cytoplasmic mRNA processing body assembly", "id": "GO:0010607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGD9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 53 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VHG1-1", "uniprot_ac": "A0A4X1VHG1", "uniprot_id": "A0A4X1VHG1_PIG", "mass": { "chemical_mass": 34711.0, "monoisotopic_mass": 34711.0 }, "refseq": {}, "gene_names": [ { "name": "OR10D3", "type": "recommended", "evidence": [ { "id": "A0A4X1VHG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ] } ], "protein_names": [ { "name": "Olfactory receptor family 10 subfamily D member 3B", "type": "synonym", "evidence": [ { "id": "A0A4X1VHG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR10D3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1", "locus": { "chromosome": "9", "start_pos": 51127733, "end_pos": 51126795, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020685", "url": "https://www.ensembl.org/id/ENSSSCG00000020685" } ] } } ], "crossref": [ { "id": "A0A4X1VHG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VHG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15228", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15228", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VHG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TEMKNCSVVTEFVLLGIPHTEGLETVLFILFLPFYACTLLGNLSILVAVLSSTRLHTPMYFFLGNVSVFDMSFSSVTCPKMLLYLMGLSPLISYQDCASQLFFFHFLGSAECFLFTVMAYDRFTAICYPLQYMVIMNPRICVALAVGTLLLGCIHSSVLTLLTFTLPYCGPNEVDHFFCDIPALLPLASADTSLAQRVSFTNVGLVSLVCFLLILMSYTRITISILRIQSTEGRRRAVSMCSAHLMAILCAYGPIITVYLQPTPNPMLGTVVQILMNLVGPMLNPLIYTLRNKEVKTALKKILHRTNHIPEI", "length": 312, "header": "tr|A0A4X1VHG1-1|A0A4X1VHG1_PIG Isoform 1 of Olfactory receptor family 10 subfamily D member 3B OS=Sus scrofa OX=9823 GN=OR10D3 PE=3 SV=1 CANONICAL=A0A4X1VHG1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VHG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1/entry", "sequence": { "sequence": "TEMKNCSVVTEFVLLGIPHTEGLETVLFILFLPFYACTLLGNLSILVAVLSSTRLHTPMYFFLGNVSVFDMSFSSVTCPKMLLYLMGLSPLISYQDCASQLFFFHFLGSAECFLFTVMAYDRFTAICYPLQYMVIMNPRICVALAVGTLLLGCIHSSVLTLLTFTLPYCGPNEVDHFFCDIPALLPLASADTSLAQRVSFTNVGLVSLVCFLLILMSYTRITISILRIQSTEGRRRAVSMCSAHLMAILCAYGPIITVYLQPTPNPMLGTVVQILMNLVGPMLNPLIYTLRNKEVKTALKKILHRTNHIPEI", "length": 312, "header": "tr|A0A4X1VHG1-1|A0A4X1VHG1_PIG Isoform 1 of Olfactory receptor family 10 subfamily D member 3B OS=Sus scrofa OX=9823 GN=OR10D3 PE=3 SV=1 CANONICAL=A0A4X1VHG1-1" }, "locus": { "chromosome": "9", "start_pos": 51127730, "end_pos": 51126795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022293.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022293.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022170.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022170.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VHG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHG1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VHP7-1", "uniprot_ac": "A0A4X1VHP7", "uniprot_id": "A0A4X1VHP7_PIG", "mass": { "chemical_mass": 14020.0, "monoisotopic_mass": 14020.0 }, "refseq": {}, "gene_names": [ { "name": "PATE1", "type": "recommended", "evidence": [ { "id": "A0A4X1VHP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7" } ] } ], "protein_names": [ { "name": "Prostate and testis expressed 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VHP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHP7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PATE1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7", "locus": { "chromosome": "9", "start_pos": 52916806, "end_pos": 52914551, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040952", "url": "https://www.ensembl.org/id/ENSSSCG00000040952" } ] } } ], "crossref": [ { "id": "A0A4X1VHP7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VHP7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23577", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23577", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VHP7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VHP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKEALAKPSRVPADFKFGRGDRSFPSSGRSAFISTSLFSGPHLGTVQCRMCHLEFPGEKCSRGRGICIAIRDESCMTGTIFRNDGTPWLTFKGCLRNCANVNNIKWSVYLVNFRCCRSHDFCNK", "length": 125, "header": "tr|A0A4X1VHP7-1|A0A4X1VHP7_PIG Isoform 1 of Prostate and testis expressed 1 OS=Sus scrofa OX=9823 GN=PATE1 PE=4 SV=1 CANONICAL=A0A4X1VHP7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VHP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7/entry", "sequence": { "sequence": "MLKEALAKPSRVPADFKFGRGDRSFPSSGRSAFISTSLFSGPHLGTVQCRMCHLEFPGEKCSRGRGICIAIRDESCMTGTIFRNDGTPWLTFKGCLRNCANVNNIKWSVYLVNFRCCRSHDFCNK", "length": 125, "header": "tr|A0A4X1VHP7-1|A0A4X1VHP7_PIG Isoform 1 of Prostate and testis expressed 1 OS=Sus scrofa OX=9823 GN=PATE1 PE=4 SV=1 CANONICAL=A0A4X1VHP7-1" }, "locus": { "chromosome": "9", "start_pos": 52916704, "end_pos": 52915489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066088.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066088.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031146.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031146.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHP7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VHP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHP7" }, { "id": "PF00021", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UPAR/Ly6", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 125, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VHX8-1", "uniprot_ac": "A0A4X1VHX8", "uniprot_id": "A0A4X1VHX8_PIG", "mass": { "chemical_mass": 33425.0, "monoisotopic_mass": 33425.0 }, "refseq": {}, "gene_names": [ { "name": "GCA", "type": "recommended", "evidence": [ { "id": "A0A4X1VHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ] } ], "protein_names": [ { "name": "Grancalcin", "type": "synonym", "evidence": [ { "id": "A0A4X1VHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GCA", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8", "locus": { "chromosome": "15", "start_pos": 69054052, "end_pos": 68985328, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027472", "url": "https://www.ensembl.org/id/ENSSSCG00000027472" } ] } } ], "crossref": [ { "id": "A0A4X1VHX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VHX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027472", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027472", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16186", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16186", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NGAYSPF", "url": "https://omabrowser.org/oma/group/NGAYSPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46735:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46735:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VHX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM64", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM64-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRSRIVRCKRKDVCTQKTYNTLQRPLLIFPLRENFICLDSWPNVKHTVKVVKRNRNLGLAERTPTLWVTRDTGGIVMAYPGYGGGFGNFSNPMPGMHMHVGQPVPGAGPAVPPSGCPAYPPYSDSYPPAGDPMWTYFTAVAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDRDCTGKMGFNEFKELLAVINAWKQNFINIDHDRSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGMVNFSYDDFLQGTMTI", "length": 297, "header": "tr|A0A4X1VHX8-1|A0A4X1VHX8_PIG Isoform 1 of Grancalcin OS=Sus scrofa OX=9823 GN=GCA PE=1 SV=1 CANONICAL=A0A4X1VHX8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VHX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8/entry", "sequence": { "sequence": "MKRSRIVRCKRKDVCTQKTYNTLQRPLLIFPLRENFICLDSWPNVKHTVKVVKRNRNLGLAERTPTLWVTRDTGGIVMAYPGYGGGFGNFSNPMPGMHMHVGQPVPGAGPAVPPSGCPAYPPYSDSYPPAGDPMWTYFTAVAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDRDCTGKMGFNEFKELLAVINAWKQNFINIDHDRSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGMVNFSYDDFLQGTMTI", "length": 297, "header": "tr|A0A4X1VHX8-1|A0A4X1VHX8_PIG Isoform 1 of Grancalcin OS=Sus scrofa OX=9823 GN=GCA PE=1 SV=1 CANONICAL=A0A4X1VHX8-1" }, "locus": { "chromosome": "15", "start_pos": 69051197, "end_pos": 68985750, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031337.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031337.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025220.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025220.2" } ] } }, { "isoform_ac": "A0A5G2QRZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRZ9/entry", "sequence": { "sequence": "MSNTCLYTCTSASLSAERTPTLWVTRDTGGIVMAYPGYGGGFGNFSNPMPGMHMHVGQPVPGAGPAVPPSGCPAYPPYSDSYPPAGDPMWTYFTAVAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDRTDT", "length": 141, "header": "tr|A0A5G2QRZ9-1|A0A5G2QRZ9_PIG Computationally mapped isoform of Grancalcin OS=Sus scrofa OX=9823 GN=GCA PE=4 SV=2 CANONICAL=A0A4X1VHX8-1" }, "locus": { "chromosome": "15", "start_pos": 69051736, "end_pos": 68986642, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089343.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089343.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067562.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067562.2" } ] } }, { "isoform_ac": "A0A8W4FM64-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM64/entry", "sequence": { "sequence": "FSSPRIVRCKRKDVCTQKTYNTLQRPLLIFPLRENFICLDSWPNVKHTVKVVKRNRNLGLAERTPTLWVTRDTGGIVMAYPGYGGGFGNFSNPMPGMHMHVGQPVPGAGPAVPPSGCPAYPPYSDSYPPAGDPMWTYFTAVAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDRDCTGKMGFNEFKELLAVINAWKQNFINIDHDRSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGMVNFSYDDFLQGTMTI", "length": 297, "header": "tr|A0A8W4FM64-1|A0A8W4FM64_PIG Computationally mapped isoform of Grancalcin OS=Sus scrofa OX=9823 GN=GCA PE=1 SV=1 CANONICAL=A0A4X1VHX8-1" }, "locus": { "chromosome": "15", "start_pos": 69051197, "end_pos": 68986512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100014.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100014.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079394.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079394.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N6W2-1", "protein_name": "Grancalcin", "gene_name": "Gca", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAYPGYGGAFGNFSGHIPGMQMQMGQPMPGPSMFSGSYPGYLAYSDSYSPADDSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFSEFKELWAALTAWKQNFMTIDQDQSGSVEHHELSQAIALMGYRLSPQTLAAIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI", "length": 218 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZYI0-1", "protein_name": "Grancalcin", "gene_name": "Gca", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAYPGYGGAFGNFGGQIPGMQVQMGQPVPGAGPNMFSGGYPGYLTYSDSYSPADDSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGSYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWKQNFMSIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDPGAAPSEWQQFKEKQVICYCLTVQKFYVELVVWTCVCVCVCVCVCVCVCVYQNPPRRVLIFFSYIFPPPPPPPSLPPPPPPPLPSSSSPFLLFSLPPPLPSSSSPFLLLSLLPLLLPFFYLLLLLMESSIPGEIFCKDFKE", "length": 353 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N7I6-1", "protein_name": "Grancalcin", "gene_name": "GCA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAYPGYGGGFGNFGNPLGQPGYPGHPAYPGSISTGDPMWKCFLAIAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDRDYSGKMGFNEFKELWAALNSWKQNFITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV", "length": 201 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P28676-1", "protein_name": "Grancalcin", "gene_name": "GCA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI", "length": 217 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VC88-1", "protein_name": "Grancalcin", "gene_name": "Gca", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAYPGYGGAFGNFSGQIPGMQMQMGQPMPGAGPNMFSGGYPGYLGYSDSYSPADDSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI", "length": 220 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8W4L0-1", "protein_name": "Probable calcium-binding protein CML49", "gene_name": "CML49", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSGYPPSSQGYGYGGNPPPPQPPYGSTGNNPPPYGSSGSNPPPPYGSSASSPYAVPYGAQPAPYGAPPSAPYASLPGDHNKPHKEKPHGASYGSPSPGGYGAHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPFLVA", "length": 335 }, "evidence": [ { "id": "A0A4X1VHX8", "url": "https://omabrowser.org/oma/group/A0A4X1VHX8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VHX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX8" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 169, "end_pos": 204, "start_aa": "Phe", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 284, "end_pos": 286 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VI73-1", "uniprot_ac": "A0A4X1VI73", "uniprot_id": "A0A4X1VI73_PIG", "mass": { "chemical_mass": 29514.0, "monoisotopic_mass": 29514.0 }, "refseq": { "ac": "NP_001116584", "name": "immunoglobulin alpha Fc receptor precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" }, "gene_names": [ { "name": "FCAR", "type": "recommended", "evidence": [ { "id": "A0A4X1VI73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ] }, { "name": "FCAR", "type": "synonym", "evidence": [ { "id": "NP_001116584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ] } ], "protein_names": [ { "name": "Fc alpha receptor", "type": "synonym", "evidence": [ { "id": "A0A4X1VI73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73/entry#names_and_taxonomy" } ] }, { "name": "Fc fragment of IgA receptor", "type": "synonym", "evidence": [ { "id": "NP_001116584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ] }, { "name": "Fc fragment of IgA, receptor for", "type": "synonym", "evidence": [ { "id": "NP_001116584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ] }, { "name": "immunoglobulin A Fc fragment receptor", "type": "synonym", "evidence": [ { "id": "NP_001116584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ] }, { "name": "immunoglobulin alpha Fc receptor precursor", "type": "synonym", "evidence": [ { "id": "NP_001116584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ] } ], "function": [ { "annotation": "FcalphaRI contain a 792-base-pair open reading frame, encoding a 264-amino-acid transmembrane glycoprotein with a predicted molecular mass of 29.4 kDa.", "evidence": [ { "database": "RefSeq", "id": "NP_001116584", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" }, { "database": "PubMed", "id": "27586529", "url": "https://glygen.org/publication/PubMed/27586529" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FCAR", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73", "locus": { "chromosome": "6", "start_pos": 59084788, "end_pos": 59074996, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003284", "url": "https://www.ensembl.org/id/ENSSSCG00000003284" } ] } } ], "crossref": [ { "id": "A0A4X1VI73", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VI73", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05751", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05751", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100144539", "url": "https://www.ncbi.nlm.nih.gov/gene/100144539", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100144539", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144539", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VI73", "url": "https://www.orthodb.org/?gene=A0A4X1VI73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001116584", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VI73-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRNTTLFCLVFCLGQKIEAQEGHFPIPTISATPGFVIPWNESVKILCWGTPESYLYQLEIMRNSTYEVVEEKLRFQKAAEFIINHMDTNTAGRYRCRYKKQYSWSEYSEALELVVTGLYDKPFLFADEGLVVRPGENISLQCSSAHMAFDRYSLSSEGGAALSLHQNGRRQGAFILGPVNLSFSGNYTCYGWYSGSPYVWSAPSDALELVVTDTTNQGSAMENAIRMGVAGLVLVVLLAILAEHWHGHQTPHTDQPDVPERS", "length": 264, "header": "tr|A0A4X1VI73-1|A0A4X1VI73_PIG Isoform 1 of Fc alpha receptor OS=Sus scrofa OX=9823 GN=FCAR PE=4 SV=1 CANONICAL=A0A4X1VI73-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VI73-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73/entry", "sequence": { "sequence": "MAPRNTTLFCLVFCLGQKIEAQEGHFPIPTISATPGFVIPWNESVKILCWGTPESYLYQLEIMRNSTYEVVEEKLRFQKAAEFIINHMDTNTAGRYRCRYKKQYSWSEYSEALELVVTGLYDKPFLFADEGLVVRPGENISLQCSSAHMAFDRYSLSSEGGAALSLHQNGRRQGAFILGPVNLSFSGNYTCYGWYSGSPYVWSAPSDALELVVTDTTNQGSAMENAIRMGVAGLVLVVLLAILAEHWHGHQTPHTDQPDVPERS", "length": 264, "header": "tr|A0A4X1VI73-1|A0A4X1VI73_PIG Isoform 1 of Fc alpha receptor OS=Sus scrofa OX=9823 GN=FCAR PE=4 SV=1 CANONICAL=A0A4X1VI73-1" }, "locus": { "chromosome": "6", "start_pos": 59083903, "end_pos": 59075097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003648.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003648.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003563.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003563.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 34, "start_aa": "Thr", "end_pos": 34, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Cloning and Characterization of the IgA Fc Receptor from Swine.", "journal": "Journal of microbiology and biotechnology", "date": "2016-12-28", "authors": "Chen Yumei, Liu Yunchao, Zhang Gaiping, Feng Hua, Ji Pengchao, Wang Guoqiang, Liu Chang, Song Yapeng, Su Yunfang, Qiao Songlin, Wang Aiping", "evidence": [ { "database": "RefSeq", "id": "NP_001116584", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116584" } ], "reference": [ { "type": "PubMed", "id": "27586529", "url": "https://glygen.org/publication/PubMed/27586529" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144539", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144539", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "immune response-inhibiting cell surface receptor signaling pathway", "id": "GO:0002767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002767", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "pmid": "" }, { "name": "immune receptor activity", "id": "GO:0140375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140375", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VI73", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VI73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VI73" }, { "id": "SM00409", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00409" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 118, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 34 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VIM5-1", "uniprot_ac": "A0A4X1VIM5", "uniprot_id": "A0A4X1VIM5_PIG", "mass": { "chemical_mass": 26782.0, "monoisotopic_mass": 26782.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Transmembrane protein 225", "type": "synonym", "evidence": [ { "id": "A0A4X1VIM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5", "locus": {} } ], "crossref": [ { "id": "A0A4X1VIM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VIM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR033542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057351", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057351", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR36477", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36477", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36477:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36477:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25452", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25452", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VIM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VIM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVHLSIRNIQAANMIFSSWALVFLAIGIIIEEWAELTFEPKQHKLIHNPWICCNPIWPEGRLEVVRNLLILVLNLSFFHNLLLGLEFTYMIPQTKLILFMTAYIAVLTGIFLFCALILYQQKLKEGESMYYSGYRITWIIFITYINVFLLIVSGFLSFLQYKHCIDGCAWLTNIPKSARESQVMEPSGASIKVISLPASREMPRSIVRVHSAHVKEASPNKAHIQARRVTWAV", "length": 233, "header": "tr|A0A4X1VIM5-1|A0A4X1VIM5_PIG Isoform 1 of Transmembrane protein 225 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VIM5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VIM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5/entry", "sequence": { "sequence": "MVHLSIRNIQAANMIFSSWALVFLAIGIIIEEWAELTFEPKQHKLIHNPWICCNPIWPEGRLEVVRNLLILVLNLSFFHNLLLGLEFTYMIPQTKLILFMTAYIAVLTGIFLFCALILYQQKLKEGESMYYSGYRITWIIFITYINVFLLIVSGFLSFLQYKHCIDGCAWLTNIPKSARESQVMEPSGASIKVISLPASREMPRSIVRVHSAHVKEASPNKAHIQARRVTWAV", "length": 233, "header": "tr|A0A4X1VIM5-1|A0A4X1VIM5_PIG Isoform 1 of Transmembrane protein 225 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VIM5-1" }, "locus": { "chromosome": "9", "start_pos": 50732596, "end_pos": 50730284, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016517.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016517.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016074.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016074.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VIM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIM5" }, { "id": "PF25452", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25452" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transmembrane protein 225", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 163, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VJ49-1", "uniprot_ac": "A0A4X1VJ49", "uniprot_id": "A0A4X1VJ49_PIG", "mass": { "chemical_mass": 24944.0, "monoisotopic_mass": 24944.0 }, "refseq": { "ac": "XP_005664089", "name": "FGFR1 oncogene partner 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664089" }, "gene_names": [ { "name": "FGFR1OP2", "type": "recommended", "evidence": [ { "id": "A0A4X1VJ49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ] }, { "name": "FGFR1OP2", "type": "synonym", "evidence": [ { "id": "XP_005664089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664089" } ] } ], "protein_names": [ { "name": "FGFR1 onco partner 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VJ49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49/entry#names_and_taxonomy" } ] }, { "name": "FGFR1 oncogene partner 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005664089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664089" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGFR1OP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49", "locus": { "chromosome": "5", "start_pos": 46794110, "end_pos": 46824153, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000554", "url": "https://www.ensembl.org/id/ENSSSCG00000000554" } ] } } ], "crossref": [ { "id": "A0A4X1VJ49", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VJ49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157490", "url": "https://www.ncbi.nlm.nih.gov/gene/100157490", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157490", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157490", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYRQHTE", "url": "https://omabrowser.org/oma/group/KYRQHTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VJ49", "url": "https://www.orthodb.org/?gene=A0A4X1VJ49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LNP7", "url": "https://www.orthodb.org/?gene=I3LNP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12186:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12186:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005664089", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664089", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VJ49-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNP7", "url": "https://www.uniprot.org/uniprotkb/I3LNP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNP7-1", "url": "https://www.uniprot.org/uniprotkb/I3LNP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERILQLEQENKGLREILQITRESFLNLRKDDVSESTSLSALVTNSDLSLRKS", "length": 215, "header": "tr|A0A4X1VJ49-1|A0A4X1VJ49_PIG Isoform 1 of FGFR1 onco partner 2 OS=Sus scrofa OX=9823 GN=FGFR1OP2 PE=3 SV=1 CANONICAL=A0A4X1VJ49-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VJ49-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49/entry", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERILQLEQENKGLREILQITRESFLNLRKDDVSESTSLSALVTNSDLSLRKS", "length": 215, "header": "tr|A0A4X1VJ49-1|A0A4X1VJ49_PIG Isoform 1 of FGFR1 onco partner 2 OS=Sus scrofa OX=9823 GN=FGFR1OP2 PE=3 SV=1 CANONICAL=A0A4X1VJ49-1" }, "locus": { "chromosome": "5", "start_pos": 46808205, "end_pos": 46796074, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000597.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000597.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000584.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000584.4" } ] } }, { "isoform_ac": "I3LNP7-1", "url": "https://www.uniprot.org/uniprotkb/I3LNP7/entry", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNNSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERILQLEQENKGLREILQITRESFLNLRKDDVSESTSLSALVTNSDLSLRKS", "length": 253, "header": "tr|I3LNP7-1|I3LNP7_PIG Computationally mapped isoform of FGFR1 onco partner 2 OS=Sus scrofa OX=9823 GN=FGFR1OP2 PE=3 SV=1 CANONICAL=A0A4X1VJ49-1" }, "locus": { "chromosome": "5", "start_pos": 46808205, "end_pos": 46796074, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032540.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032540.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000025722.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157490", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157490", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MD82-1", "protein_name": "FGFR1 oncogene partner 2 isoform X1", "gene_name": "Fgfr1op2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRSSREGVFLDASRRILEAPQHGLERRHLEANQNELQAHADQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "length": 253 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BBF9-1", "protein_name": "FGFR1 onco partner 2", "gene_name": "FGFR1OP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHTKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKEDVSESTSLSALVTSSDLSLRKS", "length": 215 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5ZKJ4-1", "protein_name": "FGFR1 oncogene partner 2 homolog", "gene_name": "FGFR1OP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKMSCTIEKALADAKALVERLREHDNAAEALIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPSIIMKLKEQHSKELQVHVDQITEMAAVMRKAIEIDDKHGCKEQERIIQLEQENKGLREILQITRESFLNLKKEDASESTSLSGLVTSSDLSLRKS", "length": 217 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6TA25-1", "protein_name": "FGFR1 oncogene partner 2 homolog", "gene_name": "Fgfr1op2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "length": 253 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7T338-1", "protein_name": "FGFR1 oncogene partner 2 homolog", "gene_name": "fgfr1op2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTCTLEKVLADAKSLVERLRDHDSAAEILIEQTTLLNKRVEAMKQYQEEIEVLNQVARHRPRSTLVMGIQQENRQIRELQQENKELHTSLEEHQSALELIMSKYREQVFRLLMASKKEDPTIVTQLREQHTNEMQAHIEKINEMATVMRKAIEVDEGRLCEDEERIKRLELENSGLRELLGISREAFLLLKRDDTSDSTSLSPLLTSTDISLRKS", "length": 215 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CRA9-1", "protein_name": "FGFR1 oncogene partner 2 homolog", "gene_name": "Fgfr1op2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "length": 253 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVK5-1", "protein_name": "FGFR1 oncogene partner 2", "gene_name": "FGFR1OP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALNKRVEAMKQYQEEIQELNEVARHRPRSTLVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKEQHSKIDMVHRNKSEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRKDDASESTSLSALVTNSDLSLRKS", "length": 253 }, "evidence": [ { "id": "A0A4X1VJ49", "url": "https://omabrowser.org/oma/group/A0A4X1VJ49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to wounding", "id": "GO:0009611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009611", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJ49", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJ49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VNI1-1", "uniprot_ac": "A0A4X1VNI1", "uniprot_id": "A0A4X1VNI1_PIG", "mass": { "chemical_mass": 9478.0, "monoisotopic_mass": 9478.0 }, "refseq": {}, "gene_names": [ { "name": "PET100", "type": "recommended", "evidence": [ { "id": "A0A4X1VNI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ] } ], "protein_names": [ { "name": "PET100 cytochrome c oxidase chaperone", "type": "synonym", "evidence": [ { "id": "A0A4X1VNI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PET100", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1", "locus": { "chromosome": "2", "start_pos": 71519392, "end_pos": 71520886, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034876", "url": "https://www.ensembl.org/id/ENSSSCG00000034876" } ] } } ], "crossref": [ { "id": "A0A4X1VNI1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VNI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR018625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33968", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33968", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33968:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33968:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VJE1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VJE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VP53", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VP53-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVKLEVFRMTIYLTFPVAMFWIANQAEWFEDYVIQRKRELWPPEKEDQRQELEEFKERIRKQREERLLRAAQQSS", "length": 76, "header": "tr|A0A4X1VNI1-1|A0A4X1VNI1_PIG Isoform 1 of PET100 cytochrome c oxidase chaperone OS=Sus scrofa OX=9823 GN=PET100 PE=3 SV=1 CANONICAL=A0A4X1VNI1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VJE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJE1/entry", "sequence": { "sequence": "MGVKLEVFRRELWPPEKEDQRQELEEFKERIRKQREERLLRAAQQSS", "length": 47, "header": "tr|A0A4X1VJE1-1|A0A4X1VNI1_PIG Computationally mapped isoform of PET100 cytochrome c oxidase chaperone OS=Sus scrofa OX=9823 GN=PET100 PE=3 SV=1 CANONICAL=A0A4X1VNI1-1" }, "locus": { "chromosome": "2", "start_pos": 71520801, "end_pos": 71519461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075148.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075148.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069659.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069659.1" } ] } }, { "isoform_ac": "A0A4X1VNI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1/entry", "sequence": { "sequence": "MGVKLEVFRMTIYLTFPVAMFWIANQAEWFEDYVIQRKRELWPPEKEDQRQELEEFKERIRKQREERLLRAAQQSS", "length": 76, "header": "tr|A0A4X1VNI1-1|A0A4X1VNI1_PIG Isoform 1 of PET100 cytochrome c oxidase chaperone OS=Sus scrofa OX=9823 GN=PET100 PE=3 SV=1 CANONICAL=A0A4X1VNI1-1" }, "locus": { "chromosome": "2", "start_pos": 71520801, "end_pos": 71519461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038943.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038943.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035816.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035816.2" } ] } }, { "isoform_ac": "A0A4X1VP53-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP53/entry", "sequence": { "sequence": "MGVKLEVFRMTIYLTFPVAMFWIANQAEWFEDYVIQRKRELWPPEKEDQVRDIFFFPPGQRGLAPHCHDG", "length": 70, "header": "tr|A0A4X1VP53-1|A0A4X1VP53_PIG Computationally mapped isoform of PET100 cytochrome c oxidase chaperone OS=Sus scrofa OX=9823 GN=PET100 PE=3 SV=1 CANONICAL=A0A4X1VNI1-1" }, "locus": { "chromosome": "2", "start_pos": 71520801, "end_pos": 71519760, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076456.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076456.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070239.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070239.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJE1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "pmid": "" }, { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex IV assembly", "id": "GO:0033617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033617", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VJK7-1", "uniprot_ac": "A0A4X1VJK7", "uniprot_id": "A0A4X1VJK7_PIG", "mass": { "chemical_mass": 18973.0, "monoisotopic_mass": 18973.0 }, "refseq": {}, "gene_names": [ { "name": "CETN1", "type": "recommended", "evidence": [ { "id": "A0A4X1VJK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ] } ], "protein_names": [ { "name": "Centrin 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VJK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CETN1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7", "locus": { "chromosome": "6", "start_pos": 105740550, "end_pos": 105741465, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028613", "url": "https://www.ensembl.org/id/ENSSSCG00000028613" } ] } } ], "crossref": [ { "id": "A0A4X1VJK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VJK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13405", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13405", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9646399", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VJK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSFKKPQVASTSQKRKVGPKPELTEDQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMKRMISEVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDECCSLGASLVVLNYFASYVIP", "length": 168, "header": "tr|A0A4X1VJK7-1|A0A4X1VJK7_PIG Isoform 1 of Centrin 1 OS=Sus scrofa OX=9823 GN=CETN1 PE=1 SV=1 CANONICAL=A0A4X1VJK7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VJK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7/entry", "sequence": { "sequence": "MASSFKKPQVASTSQKRKVGPKPELTEDQKQEVREAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMKRMISEVDKEGTGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDECCSLGASLVVLNYFASYVIP", "length": 168, "header": "tr|A0A4X1VJK7-1|A0A4X1VJK7_PIG Isoform 1 of Centrin 1 OS=Sus scrofa OX=9823 GN=CETN1 PE=1 SV=1 CANONICAL=A0A4X1VJK7-1" }, "locus": { "chromosome": "6", "start_pos": 105741465, "end_pos": 105740553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030417.3", "url": "https://www.ensembl.org/id/ENSSSCT00000030417.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020044.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020044.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9646399", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "resource": "Reactome", "description": "Aggrephagy" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJK7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VJK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJK7" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 63, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VJM2-1", "uniprot_ac": "A0A4X1VJM2", "uniprot_id": "A0A4X1VJM2_PIG", "mass": { "chemical_mass": 11711.0, "monoisotopic_mass": 11711.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM213", "type": "recommended", "evidence": [ { "id": "A0A4X1VJM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2" } ] } ], "protein_names": [ { "name": "Transmembrane protein 213", "type": "synonym", "evidence": [ { "id": "A0A4X1VJM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM213", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2", "locus": { "chromosome": "18", "start_pos": 10862206, "end_pos": 10868435, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000045348", "url": "https://www.ensembl.org/id/ENSSSCG00000045348" } ] } } ], "crossref": [ { "id": "A0A4X1VJM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VJM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR028121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR36293", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36293", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36293:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36293:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15192", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15192", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VJM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7H2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7H2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRLHSAPWAPLVLSLAFASFHSACLAESSSGSSNSTLTVHHPDLETLEQCPNADFCPQAARCCHTGVDEYGWIAAAVGWSLLFLTLILLCVDKLMKLTPEDPKDLQA", "length": 108, "header": "tr|A0A4X1VJM2-1|A0A4X1VJM2_PIG Isoform 1 of Transmembrane protein 213 OS=Sus scrofa OX=9823 GN=TMEM213 PE=4 SV=1 CANONICAL=A0A4X1VJM2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VJM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2/entry", "sequence": { "sequence": "MKRLHSAPWAPLVLSLAFASFHSACLAESSSGSSNSTLTVHHPDLETLEQCPNADFCPQAARCCHTGVDEYGWIAAAVGWSLLFLTLILLCVDKLMKLTPEDPKDLQA", "length": 108, "header": "tr|A0A4X1VJM2-1|A0A4X1VJM2_PIG Isoform 1 of Transmembrane protein 213 OS=Sus scrofa OX=9823 GN=TMEM213 PE=4 SV=1 CANONICAL=A0A4X1VJM2-1" }, "locus": { "chromosome": "18", "start_pos": 10868173, "end_pos": 10863487, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087143.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087143.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074076.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074076.1" } ] } }, { "isoform_ac": "A0A8W4F7H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7H2/entry", "sequence": { "sequence": "MAGGPQLASVGTARTEASLSGMKRLHSAPWAPLVLSLAFASFHSACLADADFCPQAARCCHTGVDEYGWIAAAVGWSLLFLTLILLCVDKLMKLTPEDPKDLQA", "length": 104, "header": "tr|A0A8W4F7H2-1|A0A8W4F7H2_PIG Computationally mapped isoform of Transmembrane protein 213 OS=Sus scrofa OX=9823 GN=TMEM213 PE=4 SV=1 CANONICAL=A0A4X1VJM2-1" }, "locus": { "chromosome": "18", "start_pos": 10868236, "end_pos": 10863487, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095437.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095437.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075248.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075248.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VJZ7-1", "uniprot_ac": "A0A4X1VJZ7", "uniprot_id": "A0A4X1VJZ7_PIG", "mass": { "chemical_mass": 6836.0, "monoisotopic_mass": 6836.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF593OS", "type": "recommended", "evidence": [ { "id": "A0A4X1VJZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7" } ] } ], "protein_names": [ { "name": "ZNF593 opposite strand", "type": "synonym", "evidence": [ { "id": "A0A4X1VJZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJZ7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF593OS", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7", "locus": { "chromosome": "6", "start_pos": 83592153, "end_pos": 83600402, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059106", "url": "https://www.ensembl.org/id/ENSSSCG00000059106" } ] } } ], "crossref": [ { "id": "A0A4X1VJZ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VJZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VJZ7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VJZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRFPRLTPGYFRVLQMQIAGELKAEPRSPLAGIVAALLAVLGLGGSCYAVWKMVGQRRPPQAP", "length": 63, "header": "tr|A0A4X1VJZ7-1|A0A4X1VJZ7_PIG Isoform 1 of ZNF593 opposite strand OS=Sus scrofa OX=9823 GN=ZNF593OS PE=4 SV=1 CANONICAL=A0A4X1VJZ7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VJZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7/entry", "sequence": { "sequence": "MRFPRLTPGYFRVLQMQIAGELKAEPRSPLAGIVAALLAVLGLGGSCYAVWKMVGQRRPPQAP", "length": 63, "header": "tr|A0A4X1VJZ7-1|A0A4X1VJZ7_PIG Isoform 1 of ZNF593 opposite strand OS=Sus scrofa OX=9823 GN=ZNF593OS PE=4 SV=1 CANONICAL=A0A4X1VJZ7-1" }, "locus": { "chromosome": "6", "start_pos": 83592646, "end_pos": 83592190, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092973.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092973.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079131.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079131.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VJZ7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VJZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VK05-1", "uniprot_ac": "A0A4X1VK05", "uniprot_id": "A0A4X1VK05_PIG", "mass": { "chemical_mass": 33959.0, "monoisotopic_mass": 33959.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC159", "type": "recommended", "evidence": [ { "id": "A0A4X1VK05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05" } ] } ], "protein_names": [ { "name": "Phospholipid phosphatase related 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VK05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC159", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05", "locus": { "chromosome": "2", "start_pos": 70047792, "end_pos": 70039977, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013620", "url": "https://www.ensembl.org/id/ENSSSCG00000013620" } ] } } ], "crossref": [ { "id": "A0A4X1VK05", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VK05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013620", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013620", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34533", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34533", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34533:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34533:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VK05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VK05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA13", "url": "https://www.uniprot.org/uniprotkb/F1SA13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA13-1", "url": "https://www.uniprot.org/uniprotkb/F1SA13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEHEQVKPLETCSSKTKVKSTVMIPDCQKLLRCELESLKSQLQAQTKAFEFLNHSVTLLEKESCLQQIKIQQLEEVLGPTSRQTDKEEHKWDVEEGRQELYGALAQGLQGLQKTLRDNEEVQRARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEEEITENLVNIQKMQKTQVKCRKVLTKMKQQGYETSNWPEPKELPPGGSGSWRDDLQKELGDIWAAVHVLQNSFDDLAISSRGRPRAASLRGYKGHRCLSPPLPSWDSNSDSDQDPSQPQLSKSRSFPPA", "length": 296, "header": "tr|A0A4X1VK05-1|A0A4X1VK05_PIG Isoform 1 of Phospholipid phosphatase related 2 OS=Sus scrofa OX=9823 GN=CCDC159 PE=4 SV=1 CANONICAL=A0A4X1VK05-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VK05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05/entry", "sequence": { "sequence": "MGEHEQVKPLETCSSKTKVKSTVMIPDCQKLLRCELESLKSQLQAQTKAFEFLNHSVTLLEKESCLQQIKIQQLEEVLGPTSRQTDKEEHKWDVEEGRQELYGALAQGLQGLQKTLRDNEEVQRARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEEEITENLVNIQKMQKTQVKCRKVLTKMKQQGYETSNWPEPKELPPGGSGSWRDDLQKELGDIWAAVHVLQNSFDDLAISSRGRPRAASLRGYKGHRCLSPPLPSWDSNSDSDQDPSQPQLSKSRSFPPA", "length": 296, "header": "tr|A0A4X1VK05-1|A0A4X1VK05_PIG Isoform 1 of Phospholipid phosphatase related 2 OS=Sus scrofa OX=9823 GN=CCDC159 PE=4 SV=1 CANONICAL=A0A4X1VK05-1" }, "locus": { "chromosome": "2", "start_pos": 70047061, "end_pos": 70040073, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062420.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062420.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032819.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032819.3" } ] } }, { "isoform_ac": "F1SA13-1", "url": "https://www.uniprot.org/uniprotkb/F1SA13/entry", "sequence": { "sequence": "MCNPLLVGLPLDPDYSVPRYCSPSSPSNVCLSANKKCDKCCEKTLEYTFHWSRTPEAETLEPAAPENTATVEARRPGRDSGPQSHGSPPLPSSDSPEHCNDQDLPKRNPSNTKKPLETCSSKTKVKSTVMIPDCQKLLRCELESLKSQLQAQTKAFEFLNHSVTLLEKESCLQQIKIQQLEEVLGPTSRQTDKEEHKWDVEEGRQELYGALAQGLQGLQKTLRDNEEVQRARTTRCLQLLAQEIRDSKKFLWEELELVREEVTFIYQKLQAQEEEITENLVNIQKMQKTQVKCRKVLTKMKQQGYETSNWPEPKELPPGGSGSWRDDLQKELGDIWTHLHPTMVPPAPVKSPKAPRSPSPHRAAVHVLQNSFDDLAISSRGRPRAASLRGYKGHRCLSPPLPSWDSNSDSDQDPSQPQLSKSRSFPPA", "length": 428, "header": "tr|F1SA13-1|F1SA13_PIG Computationally mapped isoform of Phospholipid phosphatase related 2 OS=Sus scrofa OX=9823 GN=CCDC159 PE=4 SV=4 CANONICAL=A0A4X1VK05-1" }, "locus": { "chromosome": "2", "start_pos": 70047061, "end_pos": 70040096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014876.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014876.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014475.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014475.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VK23-1", "uniprot_ac": "A0A4X1VK23", "uniprot_id": "A0A4X1VK23_PIG", "mass": { "chemical_mass": 27610.0, "monoisotopic_mass": 27610.0 }, "refseq": { "ac": "XP_005669739", "name": "BTB/POZ domain-containing protein KCTD6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669739" }, "gene_names": [ { "name": "KCTD6", "type": "recommended", "evidence": [ { "id": "A0A4X1VK23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ] }, { "name": "KCTD6", "type": "synonym", "evidence": [ { "id": "XP_005669739", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669739" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005669739", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669739" } ] }, { "name": "Potassium channel tetramerization domain containing 6", "type": "synonym", "evidence": [ { "id": "A0A4X1VK23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCTD6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23", "locus": { "chromosome": "13", "start_pos": 40219838, "end_pos": 40167717, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022131", "url": "https://www.ensembl.org/id/ENSSSCG00000022131" } ] } } ], "crossref": [ { "id": "A0A4X1VK23", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VK23", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18394", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18394", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516225", "url": "https://www.ncbi.nlm.nih.gov/gene/100516225", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516225", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516225", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FTIRMTR", "url": "https://omabrowser.org/oma/group/FTIRMTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VK23", "url": "https://www.orthodb.org/?gene=A0A4X1VK23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669739", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669739", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VK23-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2C7H6", "url": "https://www.uniprot.org/uniprotkb/A0A8D2C7H6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2C7H6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2C7H6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237, "header": "tr|A0A4X1VK23-1|A0A4X1VK23_PIG Isoform 1 of Potassium channel tetramerization domain containing 6 OS=Sus scrofa OX=9823 GN=KCTD6 PE=4 SV=1 CANONICAL=A0A4X1VK23-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VK23-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23/entry", "sequence": { "sequence": "MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237, "header": "tr|A0A4X1VK23-1|A0A4X1VK23_PIG Isoform 1 of Potassium channel tetramerization domain containing 6 OS=Sus scrofa OX=9823 GN=KCTD6 PE=4 SV=1 CANONICAL=A0A4X1VK23-1" }, "locus": { "chromosome": "13", "start_pos": 40219340, "end_pos": 40217130, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071939.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071939.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061936.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061936.1" } ] } }, { "isoform_ac": "A0A8D2C7H6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2C7H6/entry", "sequence": { "sequence": "MTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 228, "header": "tr|A0A8D2C7H6-1|A0A8D2C7H6_PIG Computationally mapped isoform of Potassium channel tetramerization domain containing 6 OS=Sus scrofa OX=9823 GN=KCTD6 PE=4 SV=1 CANONICAL=A0A4X1VK23-1" }, "locus": { "chromosome": "13", "start_pos": 40219340, "end_pos": 40218657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075628.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075628.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070542.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070542.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516225", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516225", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LPX4-1", "protein_name": "BTB/POZ domain-containing protein KCTD6 isoform X2", "gene_name": "Kctd6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237 }, "evidence": [ { "id": "A0A4X1VK23", "url": "https://omabrowser.org/oma/group/A0A4X1VK23/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3V6Z2-1", "protein_name": "Potassium channel tetramerization domain containing 6", "gene_name": "Kctd6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDNGDWSYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237 }, "evidence": [ { "id": "A0A4X1VK23", "url": "https://omabrowser.org/oma/group/A0A4X1VK23/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DG99-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "kctd6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDNGDWGHRLTHPVTLNVGGHLYTTSISTLQRYPDSMLGAMFRGDFPTTRDAQGNYFIDRDGTLFRYILNFLRTSELTLPVDFTELDLLRKEADFYQIEPLIQCLNDPKPLYPLDTFEQVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNNFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMDYITKQGFTIRNTRVHHMSERANENTVEHHWTFCRLAYKVED", "length": 237 }, "evidence": [ { "id": "A0A4X1VK23", "url": "https://omabrowser.org/oma/group/A0A4X1VK23/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BNL5-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "Kctd6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDNGDWGYMMSDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPRPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237 }, "evidence": [ { "id": "A0A4X1VK23", "url": "https://omabrowser.org/oma/group/A0A4X1VK23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NC69-1", "protein_name": "BTB/POZ domain-containing protein KCTD6", "gene_name": "KCTD6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKTDD", "length": 237 }, "evidence": [ { "id": "A0A4X1VK23", "url": "https://omabrowser.org/oma/group/A0A4X1VK23/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" }, { "name": "cullin family protein binding", "id": "GO:0097602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097602", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" }, { "name": "ankyrin binding", "id": "GO:0030506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030506", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" }, { "name": "negative regulation of smoothened signaling pathway", "id": "GO:0045879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045879", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VK23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK23" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 113, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 225, "end_pos": 227 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "uniprot_ac": "A0A4X1VK25", "uniprot_id": "A0A4X1VK25_PIG", "mass": { "chemical_mass": 12529.0, "monoisotopic_mass": 12529.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Elongin-C", "type": "recommended", "evidence": [ { "id": "A0A4X1VK25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25", "locus": {} } ], "crossref": [ { "id": "A0A4X1VK25", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VK25", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18321", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18321", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20648", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20648", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VK25-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115, "header": "tr|A0A4X1VK25-1|A0A4X1VK25_PIG Isoform 1 of Elongin-C OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VK25-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VK25-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25/entry", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115, "header": "tr|A0A4X1VK25-1|A0A4X1VK25_PIG Isoform 1 of Elongin-C OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VK25-1" }, "locus": { "chromosome": "X", "start_pos": 41745660, "end_pos": 41744517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104163.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104163.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076556.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076556.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "A0A4X1VK25", "url": "https://omabrowser.org/oma/group/A0A4X1VK25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "elongin complex", "id": "GO:0070449", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070449", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VKA9-1", "uniprot_ac": "A0A4X1VKA9", "uniprot_id": "A0A4X1VKA9_PIG", "mass": { "chemical_mass": 8360.0, "monoisotopic_mass": 8360.0 }, "refseq": { "ac": "XP_003128352", "name": "surfactant-associated protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128352" }, "gene_names": [ { "name": "SFTA2", "type": "recommended", "evidence": [ { "id": "A0A4X1VKA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9" } ] }, { "name": "SFTA2", "type": "synonym", "evidence": [ { "id": "XP_003128352", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128352" } ] } ], "protein_names": [ { "name": "Surfactant associated 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VKA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9/entry#names_and_taxonomy" } ] }, { "name": "surfactant-associated protein 2", "type": "synonym", "evidence": [ { "id": "XP_003128352", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128352" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SFTA2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9", "locus": { "chromosome": "7", "start_pos": 23420433, "end_pos": 23421417, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037154", "url": "https://www.ensembl.org/id/ENSSSCG00000037154" } ] } } ], "crossref": [ { "id": "A0A4X1VKA9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VKA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100520390", "url": "https://www.ncbi.nlm.nih.gov/gene/100520390", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520390", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR38500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38500:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38500:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128352", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VKA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATGLPLVLLLTLLGSSQGTGPGMTLRLKLKETFLADSSYDSSFLELLEKLCLLLHLPSGTNVTLHQAGSLHHVTCRV", "length": 78, "header": "tr|A0A4X1VKA9-1|A0A4X1VKA9_PIG Isoform 1 of Surfactant associated 2 OS=Sus scrofa OX=9823 GN=SFTA2 PE=4 SV=1 CANONICAL=A0A4X1VKA9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VKA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9/entry", "sequence": { "sequence": "MATGLPLVLLLTLLGSSQGTGPGMTLRLKLKETFLADSSYDSSFLELLEKLCLLLHLPSGTNVTLHQAGSLHHVTCRV", "length": 78, "header": "tr|A0A4X1VKA9-1|A0A4X1VKA9_PIG Isoform 1 of Surfactant associated 2 OS=Sus scrofa OX=9823 GN=SFTA2 PE=4 SV=1 CANONICAL=A0A4X1VKA9-1" }, "locus": { "chromosome": "7", "start_pos": 23421136, "end_pos": 23420561, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056248.4", "url": "https://www.ensembl.org/id/ENSSSCT00000056248.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053543.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053543.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKA9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520390", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VKF6-1", "uniprot_ac": "A0A4X1VKF6", "uniprot_id": "A0A4X1VKF6_PIG", "mass": { "chemical_mass": 18688.0, "monoisotopic_mass": 18688.0 }, "refseq": {}, "gene_names": [ { "name": "HTD2", "type": "recommended", "evidence": [ { "id": "A0A4X1VKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ] } ], "protein_names": [ { "name": "Hydroxyacyl-thioester dehydratase type 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HTD2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6", "locus": { "chromosome": "13", "start_pos": 40076049, "end_pos": 40071665, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035452", "url": "https://www.ensembl.org/id/ENSSSCG00000035452" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03449", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03449", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GCVFLHQ", "url": "https://omabrowser.org/oma/group/GCVFLHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VKF6", "url": "https://www.orthodb.org/?gene=A0A4X1VKF6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43437:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43437:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01575", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01575", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-75105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AVG7", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPVISSHCLWWGRLQRGICLNWLALNRMHSQHMHIRVGDRAELSRAFTQRDVAAFSELTGDVNPLHLDEDFAKHTRFGKTIVHGVLINGLISALLGTKMPGPGCIFLSQEINFPAPLYVGEVVLASAEVKKLKRFIAVIAVSCFVLESKKTVMEGWVKVMVPEAPKS", "length": 168, "header": "tr|A0A4X1VKF6-1|A0A4X1VKF6_PIG Isoform 1 of Hydroxyacyl-thioester dehydratase type 2 OS=Sus scrofa OX=9823 GN=HTD2 PE=4 SV=1 CANONICAL=A0A4X1VKF6-1" }, "isoforms": [ { "isoform_ac": "A0A287AVG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVG7/entry", "sequence": { "sequence": "MLPVISSHCLWWGRLQRGICLNWLALNRMHSQHMHIRVGDRAELSRAFTQRDVAAFSELTGDVNPLHLDEDFAKHTRFGKTIVHGVLINGLISALLGTKMPGPGCWGSNWSCSRWPTPEPQQLGIRAASATYTTPHGNARSLPQGARPGIEPETSWFLVGFLNQRAMTGTPRLRYIYLSI", "length": 180, "header": "tr|A0A287AVG7-1|A0A287AVG7_PIG Computationally mapped isoform of Hydroxyacyl-thioester dehydratase type 2 OS=Sus scrofa OX=9823 GN=HTD2 PE=4 SV=1 CANONICAL=A0A4X1VKF6-1" }, "locus": { "chromosome": "13", "start_pos": 40073323, "end_pos": 40072352, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058752.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058752.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048122.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048122.2" } ] } }, { "isoform_ac": "A0A4X1VKF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6/entry", "sequence": { "sequence": "MLPVISSHCLWWGRLQRGICLNWLALNRMHSQHMHIRVGDRAELSRAFTQRDVAAFSELTGDVNPLHLDEDFAKHTRFGKTIVHGVLINGLISALLGTKMPGPGCIFLSQEINFPAPLYVGEVVLASAEVKKLKRFIAVIAVSCFVLESKKTVMEGWVKVMVPEAPKS", "length": 168, "header": "tr|A0A4X1VKF6-1|A0A4X1VKF6_PIG Isoform 1 of Hydroxyacyl-thioester dehydratase type 2 OS=Sus scrofa OX=9823 GN=HTD2 PE=4 SV=1 CANONICAL=A0A4X1VKF6-1" }, "locus": { "chromosome": "13", "start_pos": 40072855, "end_pos": 40072352, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046433.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046433.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035917.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035917.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-75105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75105", "resource": "Reactome", "description": "Fatty acyl-CoA biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A0M8-1", "protein_name": "Ribonuclease P/MRP subunit p14", "gene_name": "Rpp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKMWSGLQRRLWQHRVVPTGQCFRCVHMKVGDRAELSRAFTQQDVATFSELTGDANPLHLSEDFAKHTRFGKTVVHGVLINGLISALLGTKMPGPGCVFLSQEIKFPAPLYIGEVVLASAEVKRLKQSVAVVEVSCCVIESKKTVMEGLVKIMVPGAPRS", "length": 161 }, "evidence": [ { "id": "A0A4X1VKF6", "url": "https://omabrowser.org/oma/group/A0A4X1VKF6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZG22-1", "protein_name": "Ribonuclease P/MRP subunit p14", "gene_name": "HTD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLLLRCGISRGDFRHGASTKLVVTNLLLGCPLLQNLHIKVGDKAELSRVFTQNDVVTFSHLTGDTNPLHLSEDFAKKTKFGRTVVHGVLINGLISAVLGTKMPGQGCVFLSQEIRFPAPLYTGEEVIAAVQVRRLRSSVAHIAVSCKVRESGKTVMEGVVKVMVPASSSC", "length": 171 }, "evidence": [ { "id": "A0A4X1VKF6", "url": "https://omabrowser.org/oma/group/A0A4X1VKF6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P86397-1", "protein_name": "Hydroxyacyl-thioester dehydratase type 2, mitochondrial", "gene_name": "HTD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFPLISSHHLWWGGLRRTVCLNLPVLTLQHFQHMHIKVGDRAELRRAFTQTDVATFSELTGDVNPLHLNEDFAKHTKFGNTIVHGVLINGLISALLGTKMPGPGCVFLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEGWVKVMVPEASKS", "length": 168 }, "evidence": [ { "id": "A0A4X1VKF6", "url": "https://omabrowser.org/oma/group/A0A4X1VKF6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQH8-1", "protein_name": "Ribonuclease P protein subunit p14", "gene_name": "Rpp14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPATAYERVVYKSPSEYHYMKVCLEFQEHGVGLNVAQFKQLLVSALRDLFGEVGAALPVDVLTYDEKTLSAILRICSSGLVKLWSSLTLFGAYKSKKCAFRVIQVSPFLLALSGNSREQVLD", "length": 122 }, "evidence": [ { "id": "A0A4X1VKF6", "url": "https://omabrowser.org/oma/group/A0A4X1VKF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FJI2-1", "protein_name": "3-hydroxyacyl-[acyl-carrier-protein] dehydratase, mitochondrial", "gene_name": "MTHD", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLAKTVFPRGLLVLRSFSSVASKTLLKVGDVLRETRVFSSEDIKAYAEVSHDWNPLHFDPESARKAGFENRLVHGMLVSSMFPRIISAHFPGAVYVSQSLHFRSPVYIGDEILGLVQAIALRETKNKYIVKFSTKCFKNHNELVVIDGEATAILPNLDMLQKSPSE", "length": 166 }, "evidence": [ { "id": "A0A4X1VKF6", "url": "https://omabrowser.org/oma/group/A0A4X1VKF6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fatty acid biosynthetic process", "id": "GO:0006633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006633", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "3-hydroxyacyl-CoA dehydratase activity", "id": "GO:0018812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018812", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "pmid": "" }, { "name": "(3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity", "id": "GO:0019171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019171", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VKF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF6" }, { "id": "PF01575", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01575" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MaoC-like", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 135, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VKF8-1", "uniprot_ac": "A0A4X1VKF8", "uniprot_id": "A0A4X1VKF8_PIG", "mass": { "chemical_mass": 62803.0, "monoisotopic_mass": 62803.0 }, "refseq": { "ac": "XP_020939634", "name": "SH2 domain-containing protein 3A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939634" }, "gene_names": [ { "name": "SH2D3A", "type": "recommended", "evidence": [ { "id": "A0A4X1VKF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ] }, { "name": "SH2D3A", "type": "synonym", "evidence": [ { "id": "XP_020939634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939634" } ] } ], "protein_names": [ { "name": "SH2 domain containing 3A", "type": "synonym", "evidence": [ { "id": "A0A4X1VKF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8/entry#names_and_taxonomy" } ] }, { "name": "SH2 domain-containing protein 3A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020939634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939634" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SH2D3A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8", "locus": { "chromosome": "2", "start_pos": 72406235, "end_pos": 72394374, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022380", "url": "https://www.ensembl.org/id/ENSSSCG00000022380" } ] } } ], "crossref": [ { "id": "A0A4X1VKF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VKF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd10337", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10337", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521544", "url": "https://www.ncbi.nlm.nih.gov/gene/100521544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521544", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WWEANEE", "url": "https://omabrowser.org/oma/group/WWEANEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VKF8", "url": "https://www.orthodb.org/?gene=A0A4X1VKF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVPEDGEDLAGQSWYHGPLSRQKAEALLQQDGDFLVRASGSRGGHPVISCRWRGSALHFEVLRVTLRPRPGRPTALFQLEDERFPSLPALVCSYVTGQRPLSQATGAVASRPVMRQGPIRRSFSEDSLSESLAQTEPLRARKRSDSQPVGLEHVGHPTEDHPGPGASTVPASALPRTGSDPVLLKTPALLGSIADNLRASDGQLHAKAPTKPPRTPSLMLPDASGRSPTYCELVPRVPRVHGTPPGHSCPEPEAPWWEANEEEEEEEQRCFARPQGEVSFCPPDNPSCLLGPQNRPLEPKALRILRGLFLEHHPGSTALHLLLVDCQETGLLGVTKAQRGAMGVASGLELLTLPHGHRLRLELLERLETLALAGALAVLGCAGPLEERAAALKGLVELALALRPGAAGDLPGLAAVMGALLMPQVSRLERTWRQLRRSHTEAALAFEQELKPLMRTLDEGTGPCDPGEVALPHVAPVVRLLEGEEVPGPLDESCERLLRTLDRARQTARDAPRFREATARRLRGFQPNPELKEALTTGFLRRLLWGSRGAGAPWVTRFDKFQHVLSVLSQRLEPDL", "length": 577, "header": "tr|A0A4X1VKF8-1|A0A4X1VKF8_PIG Isoform 1 of SH2 domain containing 3A OS=Sus scrofa OX=9823 GN=SH2D3A PE=4 SV=1 CANONICAL=A0A4X1VKF8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8/entry", "sequence": { "sequence": "MQVPEDGEDLAGQSWYHGPLSRQKAEALLQQDGDFLVRASGSRGGHPVISCRWRGSALHFEVLRVTLRPRPGRPTALFQLEDERFPSLPALVCSYVTGQRPLSQATGAVASRPVMRQGPIRRSFSEDSLSESLAQTEPLRARKRSDSQPVGLEHVGHPTEDHPGPGASTVPASALPRTGSDPVLLKTPALLGSIADNLRASDGQLHAKAPTKPPRTPSLMLPDASGRSPTYCELVPRVPRVHGTPPGHSCPEPEAPWWEANEEEEEEEQRCFARPQGEVSFCPPDNPSCLLGPQNRPLEPKALRILRGLFLEHHPGSTALHLLLVDCQETGLLGVTKAQRGAMGVASGLELLTLPHGHRLRLELLERLETLALAGALAVLGCAGPLEERAAALKGLVELALALRPGAAGDLPGLAAVMGALLMPQVSRLERTWRQLRRSHTEAALAFEQELKPLMRTLDEGTGPCDPGEVALPHVAPVVRLLEGEEVPGPLDESCERLLRTLDRARQTARDAPRFREATARRLRGFQPNPELKEALTTGFLRRLLWGSRGAGAPWVTRFDKFQHVLSVLSQRLEPDL", "length": 577, "header": "tr|A0A4X1VKF8-1|A0A4X1VKF8_PIG Isoform 1 of SH2 domain containing 3A OS=Sus scrofa OX=9823 GN=SH2D3A PE=4 SV=1 CANONICAL=A0A4X1VKF8-1" }, "locus": { "chromosome": "2", "start_pos": 72405775, "end_pos": 72398451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014805.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014805.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014404.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014404.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521544", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521544", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9BRG2-1", "protein_name": "SH2 domain-containing protein 3A", "gene_name": "SH2D3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQVPQDGEDLAGQPWYHGLLSRQKAEALLQQNGDFLVRASGSRGGNPVISCRWRGSALHFEVFRVALRPRPGRPTALFQLEDEQFPSIPALVHSYMTGRRPLSQATGAVVSRPVTWQGPLRRSFSEDTLMDGPARIEPLRARKWSNSQPADLAHMGRSREDPAGMEASTMPISALPRTSSDPVLLKAPAPLGTVADSLRASDGQLQAKAPTKPPRTPSFELPDASERPPTYCELVPRVPSVQGTSPSQSCPEPEAPWWEAEEDEEEENRCFTRPQAEISFCPHDAPSCLLGPQNRPLEPQVLHTLRGLFLEHHPGSTALHLLLVDCQATGLLGVTRDQRGNMGVSSGLELLTLPHGHHLRLELLERHQTLALAGALAVLGCSGPLEERAAALRGLVELALALRPGAAGDLPGLAAVMGALLMPQVSRLEHTWRQLRRSHTEAALAFEQELKPLMRALDEGAGPCDPGEVALPHVAPMVRLLEGEEVAGPLDESCERLLRTLHGARHMVRDAPKFRKVAAQRLRGFRPNPELREALTTGFVRRLLWGSRGAGAPRAERFEKFQRVLGVLSQRLEPDR", "length": 576 }, "evidence": [ { "id": "A0A4X1VKF8", "url": "https://omabrowser.org/oma/group/A0A4X1VKF8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VKF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 314, "end_pos": 576, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VKF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKF8" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 114, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VKM9-1", "uniprot_ac": "A0A4X1VKM9", "uniprot_id": "A0A4X1VKM9_PIG", "mass": { "chemical_mass": 8547.0, "monoisotopic_mass": 8547.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VKM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9", "locus": {} } ], "crossref": [ { "id": "A0A4X1VKM9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VKM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "CINLMPC", "url": "https://omabrowser.org/oma/group/CINLMPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VKM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VIVFMYLFVKIVHTISPNVIVCKSALSRFVVLLRVTWVANQAANQNIIFCINVIKLKKGEHIFHFASFLKESLW", "length": 74, "header": "tr|A0A4X1VKM9-1|A0A4X1VKM9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VKM9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VKM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9/entry", "sequence": { "sequence": "VIVFMYLFVKIVHTISPNVIVCKSALSRFVVLLRVTWVANQAANQNIIFCINVIKLKKGEHIFHFASFLKESLW", "length": 74, "header": "tr|A0A4X1VKM9-1|A0A4X1VKM9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VKM9-1" }, "locus": { "chromosome": "15", "start_pos": 74340098, "end_pos": 74339708, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048506.1", "url": "https://www.ensembl.org/id/ENSSSCT00000048506.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056015.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VKP1-1", "uniprot_ac": "A0A4X1VKP1", "uniprot_id": "A0A4X1VKP1_PIG", "mass": { "chemical_mass": 22407.0, "monoisotopic_mass": 22407.0 }, "refseq": {}, "gene_names": [ { "name": "C4orf51", "type": "recommended", "evidence": [ { "id": "A0A4X1VKP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1" } ] } ], "protein_names": [ { "name": "Chromosome 4 open reading frame 51", "type": "synonym", "evidence": [ { "id": "A0A4X1VKP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C4orf51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1", "locus": { "chromosome": "8", "start_pos": 82802287, "end_pos": 82829975, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000042317", "url": "https://www.ensembl.org/id/ENSSSCG00000042317" } ] } } ], "crossref": [ { "id": "A0A4X1VKP1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VKP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR031708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF15849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VKP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VKP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHFFYLTPQILLPFSPLTSQEFDVIRHKAGASWQNEARWSDSSVTTYSGSYRKKQLDDSTCGRLSLKAGQHWPECNQMSLPNYFTCRAALHKTTDIKGLFPPISSPFKNSFDIKHGVAHQILSGDFSPAPPNYERPYGRIKKLTSMDLKKYSRRRRDFLRHFQEPCDSTSKASSSEDSQADQYSVYSLGGPFSTFG", "length": 197, "header": "tr|A0A4X1VKP1-1|A0A4X1VKP1_PIG Isoform 1 of Chromosome 4 open reading frame 51 OS=Sus scrofa OX=9823 GN=C4orf51 PE=4 SV=1 CANONICAL=A0A4X1VKP1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VKP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1/entry", "sequence": { "sequence": "MSHFFYLTPQILLPFSPLTSQEFDVIRHKAGASWQNEARWSDSSVTTYSGSYRKKQLDDSTCGRLSLKAGQHWPECNQMSLPNYFTCRAALHKTTDIKGLFPPISSPFKNSFDIKHGVAHQILSGDFSPAPPNYERPYGRIKKLTSMDLKKYSRRRRDFLRHFQEPCDSTSKASSSEDSQADQYSVYSLGGPFSTFG", "length": 197, "header": "tr|A0A4X1VKP1-1|A0A4X1VKP1_PIG Isoform 1 of Chromosome 4 open reading frame 51 OS=Sus scrofa OX=9823 GN=C4orf51 PE=4 SV=1 CANONICAL=A0A4X1VKP1-1" }, "locus": { "chromosome": "8", "start_pos": 82829776, "end_pos": 82802349, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080865.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080865.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073835.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073835.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VKP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VL56-1", "uniprot_ac": "A0A4X1VL56", "uniprot_id": "A0A4X1VL56_PIG", "mass": { "chemical_mass": 26312.0, "monoisotopic_mass": 26312.0 }, "refseq": { "ac": "XP_005654834", "name": "ATPase SWSAP1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654834" }, "gene_names": [ { "name": "SWSAP1", "type": "recommended", "evidence": [ { "id": "A0A4X1VL56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ] }, { "name": "SWSAP1", "type": "synonym", "evidence": [ { "id": "XP_005654834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654834" } ] } ], "protein_names": [ { "name": "ATPase SWSAP1", "type": "synonym", "evidence": [ { "id": "XP_005654834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654834" } ] }, { "name": "SWIM-type zinc finger 7 associated protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VL56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SWSAP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56", "locus": { "chromosome": "2", "start_pos": 70063261, "end_pos": 70060193, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037146", "url": "https://www.ensembl.org/id/ENSSSCG00000037146" } ] } } ], "crossref": [ { "id": "A0A4X1VL56", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VL56", "database": "AlphaFoldDB", "categories": [] }, { "id": "100515253", "url": "https://www.ncbi.nlm.nih.gov/gene/100515253", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515253", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515253", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EMTITPW", "url": "https://omabrowser.org/oma/group/EMTITPW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VL56", "url": "https://www.orthodb.org/?gene=A0A4X1VL56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28653", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28653", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28653:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28653:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_005654834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654834", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VL56-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETLRRVLNSGSAAGPAEESTAEAGPPLLLLGGPGSGKTALLFAAALETAGEGQGPVLFLTRRPLQSLPRGTRAALEPLRLQKIRFQYPPSTLELLRLLCSAHEARGAAPSLLLLDGLEEYLTEDLGPQEAAYLAALLVDTAAHFSHQGGPGQGCGLIVALQTQEEGDSGDAQPLALLQRYFPAQCWLQPNASGPGQHCLRACLEPGGLEPRAEWWVTFQPDGEMTVTQWPTQAGDTGSHKGSSSEGQS", "length": 250, "header": "tr|A0A4X1VL56-1|A0A4X1VL56_PIG Isoform 1 of SWIM-type zinc finger 7 associated protein 1 OS=Sus scrofa OX=9823 GN=SWSAP1 PE=4 SV=1 CANONICAL=A0A4X1VL56-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VL56-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56/entry", "sequence": { "sequence": "MAETLRRVLNSGSAAGPAEESTAEAGPPLLLLGGPGSGKTALLFAAALETAGEGQGPVLFLTRRPLQSLPRGTRAALEPLRLQKIRFQYPPSTLELLRLLCSAHEARGAAPSLLLLDGLEEYLTEDLGPQEAAYLAALLVDTAAHFSHQGGPGQGCGLIVALQTQEEGDSGDAQPLALLQRYFPAQCWLQPNASGPGQHCLRACLEPGGLEPRAEWWVTFQPDGEMTVTQWPTQAGDTGSHKGSSSEGQS", "length": 250, "header": "tr|A0A4X1VL56-1|A0A4X1VL56_PIG Isoform 1 of SWIM-type zinc finger 7 associated protein 1 OS=Sus scrofa OX=9823 GN=SWSAP1 PE=4 SV=1 CANONICAL=A0A4X1VL56-1" }, "locus": { "chromosome": "2", "start_pos": 70061772, "end_pos": 70060208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054633.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054633.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055940.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055940.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515253", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515253", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E9QGK9-1", "protein_name": "ATPase SWSAP1", "gene_name": "swsap1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADILGVVFRRFASRTRDLIFPSDIEGNTLVLGDVNISRSVLFLAAVTAATDLGLKVLFFTQGPFQSLPVSLRASVPGLKLESLKNVRFVYAKTLEDLLEDVASLHQLASEAASLPSLIIVDALDQYLQAGPQQDDLSPVAHIAALLHDTAAFLTQIQQSRAGGQGLCRVMLSCQAEGEGRGESAEILLSVLDRYLQVRCTLEEVTGQMGQSEWQVYLSFTSPAPAVQGQQWHMMLQASGAVEFRPVSAGEQAILEQTQLRDVKRESKAS", "length": 270 }, "evidence": [ { "id": "A0A4X1VL56", "url": "https://omabrowser.org/oma/group/A0A4X1VL56/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3H6A0-1", "protein_name": "ATPase SWSAP1", "gene_name": "Swsap1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEALRRVLNEGRAAGPGEEGAPGPPLLLLGAPRSAQTSLLFAAALEAAGEGRGPVLFMTRRPLQSLPLNTPAARNPWRLQKVRFQYPSSVPELLQLLASAHETPGPAPSLLLLDGLEEYLAEDSGVQEAAYLAALLLDTAAYFSHRLGANGSCGLVVALETQKEEDNDAPHLTLLQRYFPALCWLQPDALDLGQHHCLRASLELGKLSPRTEWSVTFLPSGEMKIIPWPTQASKPSPDKKCSSAESQSLTLECGNLSDPQFPLDRILPSGTGSESKTWKM", "length": 281 }, "evidence": [ { "id": "A0A4X1VL56", "url": "https://omabrowser.org/oma/group/A0A4X1VL56/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6NVH7-1", "protein_name": "ATPase SWSAP1", "gene_name": "SWSAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAETLRRVLTRGGAAWSGEENMPAAGPPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGLRACLEPGGLGPRTEWWVTFRSDGEMMIAPWPTQAGDPSSGKGSSSGGQP", "length": 250 }, "evidence": [ { "id": "A0A4X1VL56", "url": "https://omabrowser.org/oma/group/A0A4X1VL56/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VCI7-1", "protein_name": "ATPase SWSAP1", "gene_name": "Swsap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEALRRVLNAGCAARPGEDGAAGPPLLLLGAPRSAQTSLLFAAALEAAGEGRGSVLFVTRRPLQSLPLSTPTAREHWRLQKVRFQYPSSIQELLQLLASAHEAPAPTPSLLLLDGLEEYLAEDPSAQEAAYLAALLLDTAAFFSHRLGANGSCGLVVALETQKEAEADAPHLPLLKRYFPAQCWLQPDALGLGQHCCLRASLELGKLSPRTEWSVSFLPCGEMKVTPWLAQASKLSPEKKDSSAGSQSLTLGCDNLPGPGSPLDGILTSETGADSKT", "length": 278 }, "evidence": [ { "id": "A0A4X1VL56", "url": "https://omabrowser.org/oma/group/A0A4X1VL56/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Shu complex", "id": "GO:0097196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097196", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VL99-1", "uniprot_ac": "A0A4X1VL99", "uniprot_id": "A0A4X1VL99_PIG", "mass": { "chemical_mass": 51997.0, "monoisotopic_mass": 51997.0 }, "refseq": { "ac": "XP_020954079", "name": "sodium-dependent phosphate transport protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954079" }, "gene_names": [ { "name": "SLC17A2", "type": "recommended", "evidence": [ { "id": "A0A4X1VL99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ] }, { "name": "SLC17A2", "type": "synonym", "evidence": [ { "id": "XP_020954079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954079" } ] } ], "protein_names": [ { "name": "Solute carrier family 17 member 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VL99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99/entry#names_and_taxonomy" } ] }, { "name": "sodium-dependent phosphate transport protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020954079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954079" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC17A2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99", "locus": { "chromosome": "7", "start_pos": 20644244, "end_pos": 20663423, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036191", "url": "https://www.ensembl.org/id/ENSSSCG00000036191" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036191", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036191", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17318", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17318", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255195", "url": "https://www.ncbi.nlm.nih.gov/gene/110255195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050382", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050382", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255195", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRGTWAF", "url": "https://omabrowser.org/oma/group/MRGTWAF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11662:SF193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11662:SF193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954079", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "71255", "url": "https://www.rhea-db.org/rhea/71255", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B1E6", "url": "https://www.uniprot.org/uniprotkb/A0A287B1E6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1E6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VL99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKKPSTRKGPEFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNGTQQPGLLNASTERPLAFTLNHSNRSIKEFNTGASVYEWSPETQGIIFSSISYGIILTLIPSGYLAGIFGAKQMLGAGLLISSLLTLFTPLAADFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSTGCVCCLLWFTVIYDDPLHHPCITAREKEHIVSSLAQQSSSPRRSVPIKAMVRCLPLWAIFTGFFSHFWLCTIIITYLPTYISSVLHVNIRDSGVLSSLPFIAASSCTILGGQLADFLLSRKLLRLITVRKLFSSLGLLLPSLCAVALPFVASSYITTIILLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLIAGIISSTATGFLISQDSVSGWRNVFFLAAAVNIFGLVFYLTFGQAEIQDWAKERTLTRL", "length": 478, "header": "tr|A0A4X1VL99-1|A0A4X1VL99_PIG Isoform 1 of Solute carrier family 17 member 2 OS=Sus scrofa OX=9823 GN=SLC17A2 PE=3 SV=1 CANONICAL=A0A4X1VL99-1" }, "isoforms": [ { "isoform_ac": "A0A287B1E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1E6/entry", "sequence": { "sequence": "MHFSNFTMITQRVSLSIAIIAMVNGTQQPGLLNASTERPLAFTLNHSNRSIKEFNTGASVYEWSPETQGIIFSSISYGIILTLIPSGYLAGIFGAKQMLGAGLLISSLLTLFTPLAADFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSTGCVCCLLWFTVIYDDPLHHPCITAREKEHIVSSLAQQSSSPRRSVPIKAMVRCLPLWAIFTGFFSHFWLCTIIITYLPTYISSVLHVNIRDSGVLSSLPFIAASSCTILGGQLADFLLSRKLLRLITVRKLFSSLGLLLPSLCAVALPFVASSYITTIILLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLIAGIISSTATGFLISQVGPVY", "length": 416, "header": "tr|A0A287B1E6-1|A0A287B1E6_PIG Computationally mapped isoform of Solute carrier family 17 member 2 OS=Sus scrofa OX=9823 GN=SLC17A2 PE=3 SV=3 CANONICAL=A0A4X1VL99-1" }, "locus": { "chromosome": "7", "start_pos": 20656287, "end_pos": 20647640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066289.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066289.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050230.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050230.3" } ] } }, { "isoform_ac": "A0A4X1VL99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99/entry", "sequence": { "sequence": "MDKKPSTRKGPEFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNGTQQPGLLNASTERPLAFTLNHSNRSIKEFNTGASVYEWSPETQGIIFSSISYGIILTLIPSGYLAGIFGAKQMLGAGLLISSLLTLFTPLAADFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSTGCVCCLLWFTVIYDDPLHHPCITAREKEHIVSSLAQQSSSPRRSVPIKAMVRCLPLWAIFTGFFSHFWLCTIIITYLPTYISSVLHVNIRDSGVLSSLPFIAASSCTILGGQLADFLLSRKLLRLITVRKLFSSLGLLLPSLCAVALPFVASSYITTIILLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLIAGIISSTATGFLISQDSVSGWRNVFFLAAAVNIFGLVFYLTFGQAEIQDWAKERTLTRL", "length": 478, "header": "tr|A0A4X1VL99-1|A0A4X1VL99_PIG Isoform 1 of Solute carrier family 17 member 2 OS=Sus scrofa OX=9823 GN=SLC17A2 PE=3 SV=1 CANONICAL=A0A4X1VL99-1" }, "locus": { "chromosome": "7", "start_pos": 20657536, "end_pos": 20646090, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053806.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053806.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057023.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057023.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255195", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LXY0-1", "protein_name": "Sodium-dependent phosphate transport protein 3 isoform X1", "gene_name": "Slc17a2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDEKPTTKKDSGFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANAATEGPLTDPLSNRSRSVKDFGTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKHILGAGLLISSLLTLFTPMAAEFGVILVIAIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFVFYIFGSIGCVCCVLWFTVIYDDPMNHPCISGKEKEHITSSLAQQSSSPRRSIPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYINTVLHVNIRDSGVLSSLPFIAASSCTVLGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYITTIVLLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQDSESGWRNVFFLSAAVNMFGMIFYLIFGQAEIQNWAKERMITRL", "length": 478 }, "evidence": [ { "id": "A0A4X1VL99", "url": "https://omabrowser.org/oma/group/A0A4X1VL99/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A3I8-1", "protein_name": "Solute carrier family 17, member 2", "gene_name": "Slc17a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEKPTTRKGSGFCSLRYALALVMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASAEGPVMNLLSNRSRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLISSLLTLFTPLAADFGVILVIVIRTVQGMAQGMSWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSIGCVCCVLWFTMIYDDPMHHPCISVKEKEYITSSVAQQSSSPRRSIPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFIAASSCTILGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYIATIVLLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQVGHVIEHLQVAGF", "length": 447 }, "evidence": [ { "id": "A0A4X1VL99", "url": "https://omabrowser.org/oma/group/A0A4X1VL99/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O00624-1", "protein_name": "Sodium-dependent phosphate transport protein 3", "gene_name": "SLC17A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGKPATRKGPDFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNTTQQQGLSNASTEGPVADAFNNSSISIKEFDTKASVYQWSPETQGIIFSSINYGIILTLIPSGYLAGIFGAKKMLGAGLLISSLLTLFTPLAADFGVILVIMVRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTTIAGSGSAFGSFIILCVGGLISQALSWPFIFYIFGSTGCVCCLLWFTVIYDDPMHHPCISVREKEHILSSLAQQPSSPGRAVPIKAMVTCLPLWAIFLGFFSHFWLCTIILTYLPTYISTLLHVNIRDSGVLSSLPFIAAASCTILGGQLADFLLSRNLLRLITVRKLFSSLGLLLPSICAVALPFVASSYVITIILLILIPGTSNLCDSGFIINTLDIAPRYASFLMGISRGFGLIAGIISSTATGFLISQVGPVY", "length": 439 }, "evidence": [ { "id": "A0A4X1VL99", "url": "https://omabrowser.org/oma/group/A0A4X1VL99/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q32LF0-1", "protein_name": "Sodium-dependent phosphate transport protein 3", "gene_name": "SLC17A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDEKPSTRKSPEFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNRTQQPGLFNTSTERPLAFTFNHSNRSIKEFNTAEVSVYEWSPETQGIIFSSINYGIILTLIPSGYLAGIFGAKQMLGAGLLISSLLTLFTPLTADFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSIGCVCCLLWFTVIYDDPLHHPCISIREKEHIVSSLAQQSSSPRRSVPIKSMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISSVLHVNIRDSGVLSSLPFIAAASCTILGGQLADFLLSRNLLRLITVRKLFSSLGLLLPSLCAVALPFVASSYTTTIILLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLIAGIISSTATGFLISQDSVSGWRNVFFLAAAVNMFGLVFYLTFGQAEIQHWAKERTLTRL", "length": 479 }, "evidence": [ { "id": "A0A4X1VL99", "url": "https://omabrowser.org/oma/group/A0A4X1VL99/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5SZA1-1", "protein_name": "Sodium-dependent phosphate transport protein 3", "gene_name": "Slc17a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKPTTRKGSGFCSLRYALALIMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASTEGPVMDLLSNQSRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLISSLLTLFTPLAADFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWPFIFYIFGSIGCVCCVLWFTVIYDDPMHHPCISVREKEHITSSVAQQSSSPRRSVPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFIAASSCTILGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYIATIVLLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQDSESGWRNVFFLSAAVNMFGLIFYLIFGQAEIQSWAKERTLTRL", "length": 478 }, "evidence": [ { "id": "A0A4X1VL99", "url": "https://omabrowser.org/oma/group/A0A4X1VL99/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "pmid": "" }, { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sodium ion transport", "id": "GO:0006814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006814", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VL99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "71255", "name": "", "equation": "3 Na(+)(out) + phosphate(out) = 3 Na(+)(in) + phosphate(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71255", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71255" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VL99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VL99" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 466, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 56, "end_pos": 58 }, { "start_pos": 68, "end_pos": 70 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VLA3-1", "uniprot_ac": "A0A4X1VLA3", "uniprot_id": "A0A4X1VLA3_PIG", "mass": { "chemical_mass": 10973.0, "monoisotopic_mass": 10973.0 }, "refseq": { "ac": "NP_001230437", "name": "small integral membrane protein 8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437" }, "gene_names": [ { "name": "SMIM8", "type": "recommended", "evidence": [ { "id": "A0A4X1VLA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3" } ] }, { "name": "C1H6orf162", "type": "synonym", "evidence": [ { "id": "NP_001230437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437" } ] }, { "name": "SMIM8", "type": "synonym", "evidence": [ { "id": "NP_001230437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 8", "type": "recommended", "evidence": [ { "id": "A0A4X1VLA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 8", "type": "synonym", "evidence": [ { "id": "NP_001230437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437" } ] }, { "name": "uncharacterized protein C6orf162 ortholog", "type": "synonym", "evidence": [ { "id": "NP_001230437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3", "locus": { "chromosome": "1", "start_pos": 55765079, "end_pos": 55753910, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004300", "url": "https://www.ensembl.org/id/ENSSSCG00000004300" } ] } } ], "crossref": [ { "id": "A0A4X1VLA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VLA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100154764", "url": "https://www.ncbi.nlm.nih.gov/gene/100154764", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026686", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026686", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154764", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154764", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMHATRE", "url": "https://omabrowser.org/oma/group/YMHATRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VLA3", "url": "https://www.orthodb.org/?gene=A0A4X1VLA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14274:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14274:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230437", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230437", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VLA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VLA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAPEPPAFKKELPKEKDFGNPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLITLSLCVAYIGYLHATQENKKDLYEAIDSEGHSYMRRKTSKWD", "length": 97, "header": "tr|A0A4X1VLA3-1|A0A4X1VLA3_PIG Isoform 1 of Small integral membrane protein 8 OS=Sus scrofa OX=9823 GN=SMIM8 PE=1 SV=1 CANONICAL=A0A4X1VLA3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VLA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3/entry", "sequence": { "sequence": "MASAPEPPAFKKELPKEKDFGNPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLITLSLCVAYIGYLHATQENKKDLYEAIDSEGHSYMRRKTSKWD", "length": 97, "header": "tr|A0A4X1VLA3-1|A0A4X1VLA3_PIG Isoform 1 of Small integral membrane protein 8 OS=Sus scrofa OX=9823 GN=SMIM8 PE=1 SV=1 CANONICAL=A0A4X1VLA3-1" }, "locus": { "chromosome": "1", "start_pos": 55762450, "end_pos": 55760425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004754.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004754.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004643.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004643.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154764", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154764", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VDV9-1", "protein_name": "Small integral membrane protein 8", "gene_name": "SMIM8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSAPEPPAFKKEPPKEKDLGNIGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLITISLCVAYIGYLHATQENKKDLYEAIDSEGHSYMRRKTSKWD", "length": 97 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1P1R4-1", "protein_name": "Small integral membrane protein 8", "gene_name": "SMIM8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSSKTPHGNETPNEGNPGLRGARTTTLFRAVNPELFIKPNKPMMAFGLVAITLCVAYLGYLHATVENKKDLYEAVDSEGSRYMRRKTSKWD", "length": 92 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HJ38-1", "protein_name": "Small integral membrane protein 8", "gene_name": "Smim8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSAPEPPAVKKEPPKERNFESPGLRGTHTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHATQENKKELYEAIDSEGHHYMRRKTSKWD", "length": 97 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3V8Z7-1", "protein_name": "Small integral membrane protein 8", "gene_name": "Smim8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPDPPTVKKEPSKERNFENPGLRGTHPTTLFRAVNPELFIKPNKPVMAFGLVALSLCVAYIGYLHATQENKKDLYEAIDSEGHRYMRRKTSKWD", "length": 97 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q502E5-1", "protein_name": "Small integral membrane protein 8", "gene_name": "smim8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSGQSSSSSGKAGPQEPPSSAAEPAYRSPGLRGVRTTSLFRAVNPELFIRPNKPVMALGLLALSVCVGYLGYLHAIRDSDQQLYEAVDSDGETYMRRRTSRWD", "length": 104 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96KF7-1", "protein_name": "Small integral membrane protein 8", "gene_name": "SMIM8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSAPEPPTFKKEPPKEKEFQSPGLRGVRTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHAIQENKKDLYEAIDSEGHSYMRRKTSKWD", "length": 97 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQQ0-1", "protein_name": "Small integral membrane protein 8", "gene_name": "Smim8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSAPDPPTVKKEPLKEKNFENPGLRGAHTTTLFRAVNPELFIKPNKPVMAFGLVTLSLCVAYIGYLHATQENRKDLYEAIDSEGHRYMRRKTSKWD", "length": 97 }, "evidence": [ { "id": "A0A4X1VLA3", "url": "https://omabrowser.org/oma/group/A0A4X1VLA3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VLK1-1", "uniprot_ac": "A0A4X1VLK1", "uniprot_id": "A0A4X1VLK1_PIG", "mass": { "chemical_mass": 17728.0, "monoisotopic_mass": 17728.0 }, "refseq": { "ac": "NP_001231458", "name": "protein NKG7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231458" }, "gene_names": [ { "name": "NKG7", "type": "recommended", "evidence": [ { "id": "A0A4X1VLK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ] }, { "name": "NKG7", "type": "synonym", "evidence": [ { "id": "NP_001231458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231458" } ] } ], "protein_names": [ { "name": "Protein NKG7", "type": "recommended", "evidence": [ { "id": "A0A4X1VLK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1/entry#names_and_taxonomy" } ] }, { "name": "Natural killer cell protein 7", "type": "synonym", "evidence": [ { "id": "A0A4X1VLK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1/entry#names_and_taxonomy" } ] }, { "name": "natural killer cell group 7 sequence", "type": "synonym", "evidence": [ { "id": "NP_001231458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231458" } ] }, { "name": "protein NKG7", "type": "synonym", "evidence": [ { "id": "NP_001231458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231458" } ] } ], "function": [ { "annotation": "Regulates cytotoxic granule exocytosis in effector lymphocytes, thus acting as a critical mediator of inflammation in a broad range of infectious and non-infectious diseases. Essential for cytotoxic degranulation of natural killer (NK) cells and CD8(+) T-cells and for the activation of CD4(+) T-cells following infection. Plays a critical role in CD8(+) T-cell and NK cell-mediated cytolysis of target cells and contributes to the cytolytic activity via the perforin/granzyme pathway by enhancing exocytosis of LAMP1-carrying lytic granules. Contributes to NK cell-mediated control of cancer metastasis.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1#function" }, { "database": "UniProtKB", "id": "ARBA00059714", "url": "https://www.uniprot.org/uniprotkb/ARBA00059714#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NKG7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1", "locus": { "chromosome": "6", "start_pos": 58497827, "end_pos": 58496089, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003231", "url": "https://www.ensembl.org/id/ENSSSCG00000003231" } ] } } ], "crossref": [ { "id": "A0A4X1VLK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VLK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100513287", "url": "https://www.ncbi.nlm.nih.gov/gene/100513287", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513287", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513287", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YIHVTQT", "url": "https://omabrowser.org/oma/group/YIHVTQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VLK1", "url": "https://www.orthodb.org/?gene=A0A4X1VLK1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231458", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VLK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPCRSLALLTSSLGLMSVLVALSTNFWFEAQGPHFSSHSGLWPSGDEGSIEGYIHVTQSFGILAALWGLVSVSFLVMSCIPSLSAPGRGPLVSTFTAFGAALSLMVAMTVYTVERWNQPRHSQIQRSFSWSFYLGWVSTVLFLCTGGLSLGAHFGAPRAGYDSV", "length": 165, "header": "tr|A0A4X1VLK1-1|A0A4X1VLK1_PIG Isoform 1 of Protein NKG7 OS=Sus scrofa OX=9823 GN=NKG7 PE=3 SV=1 CANONICAL=A0A4X1VLK1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VLK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1/entry", "sequence": { "sequence": "MEPCRSLALLTSSLGLMSVLVALSTNFWFEAQGPHFSSHSGLWPSGDEGSIEGYIHVTQSFGILAALWGLVSVSFLVMSCIPSLSAPGRGPLVSTFTAFGAALSLMVAMTVYTVERWNQPRHSQIQRSFSWSFYLGWVSTVLFLCTGGLSLGAHFGAPRAGYDSV", "length": 165, "header": "tr|A0A4X1VLK1-1|A0A4X1VLK1_PIG Isoform 1 of Protein NKG7 OS=Sus scrofa OX=9823 GN=NKG7 PE=3 SV=1 CANONICAL=A0A4X1VLK1-1" }, "locus": { "chromosome": "6", "start_pos": 58497345, "end_pos": 58496298, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003590.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003590.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003507.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003507.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513287", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513287", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q16617-1", "protein_name": "Protein NKG7", "gene_name": "NKG7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELCRSLALLGGSLGLMFCLIALSTDFWFEAVGPTHSAHSGLWPTGHGDIISGYIHVTQTFSIMAVLWALVSVSFLVLSCFPSLFPPGHGPLVSTTAAFAAAISMVVAMAVYTSERWDQPPHPQIQTFFSWSFYLGWVSAILLLCTGALSLGAHCGGPRPGYETL", "length": 165 }, "evidence": [ { "id": "A0A4X1VLK1", "url": "https://omabrowser.org/oma/group/A0A4X1VLK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2KJ11-1", "protein_name": "Protein NKG7", "gene_name": "NKG7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPCRSLALLTSSLGLVSLLVAVSTNFWFAARGPGFSSHSGLWPSKDQVSVAGYIHVTQSFCILAVLWGLISTAFLVMSCIPSLSAPGRGPIVSTFMGFAGALSLIVAMTVYTIERWNQPANPQVQSFFSWSFYLGWVSTLLFLCTGGLSLGAHCTTHRPDYEAV", "length": 165 }, "evidence": [ { "id": "A0A4X1VLK1", "url": "https://omabrowser.org/oma/group/A0A4X1VLK1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "pmid": "" }, { "name": "cytolytic granule membrane", "id": "GO:0101004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0101004", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "pmid": "" }, { "name": "killing of cells of another organism", "id": "GO:0031640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031640", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "pmid": "" }, { "name": "defense response to protozoan", "id": "GO:0042832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042832", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VLK2-1", "uniprot_ac": "A0A4X1VLK2", "uniprot_id": "A0A4X1VLK2_PIG", "mass": { "chemical_mass": 19893.0, "monoisotopic_mass": 19893.0 }, "refseq": { "ac": "XP_005660842", "name": "tetratricopeptide repeat protein 9C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660842" }, "gene_names": [ { "name": "TTC9C", "type": "recommended", "evidence": [ { "id": "A0A4X1VLK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2" } ] }, { "name": "TTC9C", "type": "synonym", "evidence": [ { "id": "XP_005660842", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660842" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 9C", "type": "recommended", "evidence": [ { "id": "A0A4X1VLK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 9C", "type": "synonym", "evidence": [ { "id": "XP_005660842", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660842" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC9C", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2", "locus": { "chromosome": "2", "start_pos": 9024477, "end_pos": 9033968, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035472", "url": "https://www.ensembl.org/id/ENSSSCG00000035472" } ] } } ], "crossref": [ { "id": "A0A4X1VLK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VLK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100621273", "url": "https://www.ncbi.nlm.nih.gov/gene/100621273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621273", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621273", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KIYANMS", "url": "https://omabrowser.org/oma/group/KIYANMS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VLK2", "url": "https://www.orthodb.org/?gene=A0A4X1VLK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11242:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11242:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14559", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14559", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660842", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660842", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VLK2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VLK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKRLQEAQLYKEKGNQCYREGKYRDAVSGYHRALLQLRGLDPSMPSPIPNLGPQGPALTPEQENVLHTTQTDCYNNLAACLLQMEPVNYERVKEYSQKVLERQPDNAKALYRAGVAFFHLQDYDRAQHYLTAAVNRQPKDANVRRYLQRTQLELSSYHRKEKQLYLGMFG", "length": 171, "header": "tr|A0A4X1VLK2-1|A0A4X1VLK2_PIG Isoform 1 of Tetratricopeptide repeat protein 9C OS=Sus scrofa OX=9823 GN=TTC9C PE=3 SV=1 CANONICAL=A0A4X1VLK2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VLK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2/entry", "sequence": { "sequence": "MEKRLQEAQLYKEKGNQCYREGKYRDAVSGYHRALLQLRGLDPSMPSPIPNLGPQGPALTPEQENVLHTTQTDCYNNLAACLLQMEPVNYERVKEYSQKVLERQPDNAKALYRAGVAFFHLQDYDRAQHYLTAAVNRQPKDANVRRYLQRTQLELSSYHRKEKQLYLGMFG", "length": 171, "header": "tr|A0A4X1VLK2-1|A0A4X1VLK2_PIG Isoform 1 of Tetratricopeptide repeat protein 9C OS=Sus scrofa OX=9823 GN=TTC9C PE=3 SV=1 CANONICAL=A0A4X1VLK2-1" }, "locus": { "chromosome": "2", "start_pos": 9033248, "end_pos": 9026476, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029819.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029819.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022891.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022891.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLK2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621273", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621273", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4IFF3-1", "protein_name": "Tetratricopeptide repeat protein 9C", "gene_name": "TTC9C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEKRLQEAQLYKEKGNQCYREGKYRDAVSGYHRALLQLRGLDPSLPSPIPNLGPQGPALTPEQENLLHTTQTDCYNNLAACLLQMEPVNYERVKEYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLMAAVNRKPKDANVRRYLQRTQLELSSYHRKEKQLYLGMFG", "length": 171 }, "evidence": [ { "id": "A0A4X1VLK2", "url": "https://omabrowser.org/oma/group/A0A4X1VLK2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3II32-1", "protein_name": "Tetratricopeptide repeat protein 9C", "gene_name": "Ttc9c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKRLQEAQLFKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPIPNLGPEGPALTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLLAAINRQPKDANVRRYLQLTQSELSSYHRKEKQLYLGMFG", "length": 171 }, "evidence": [ { "id": "A0A4X1VLK2", "url": "https://omabrowser.org/oma/group/A0A4X1VLK2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6P5P3-1", "protein_name": "Tetratricopeptide repeat protein 9C", "gene_name": "Ttc9c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPIPNLGPQGPALTPEQENILHTIQTDCYNNLAACLLQMEPVKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQLYLGMFA", "length": 171 }, "evidence": [ { "id": "A0A4X1VLK2", "url": "https://omabrowser.org/oma/group/A0A4X1VLK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810A3-1", "protein_name": "Tetratricopeptide repeat protein 9C", "gene_name": "Ttc9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRLQEAQVYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPLSSLGPQGPALTPEQENILHTIQTHCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDRARHHLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQLYLGMFG", "length": 171 }, "evidence": [ { "id": "A0A4X1VLK2", "url": "https://omabrowser.org/oma/group/A0A4X1VLK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N5M4-1", "protein_name": "Tetratricopeptide repeat protein 9C", "gene_name": "TTC9C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPLPNLGPQGPALTPEQENILHTTQTDCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQLYLGMFG", "length": 171 }, "evidence": [ { "id": "A0A4X1VLK2", "url": "https://omabrowser.org/oma/group/A0A4X1VLK2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VLL3-1", "uniprot_ac": "A0A4X1VLL3", "uniprot_id": "A0A4X1VLL3_PIG", "mass": { "chemical_mass": 28062.0, "monoisotopic_mass": 28062.0 }, "refseq": {}, "gene_names": [ { "name": "TLCD5", "type": "recommended", "evidence": [ { "id": "A0A4X1VLL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3" } ] } ], "protein_names": [ { "name": "TLC domain containing 5", "type": "synonym", "evidence": [ { "id": "A0A4X1VLL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TLCD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3", "locus": { "chromosome": "9", "start_pos": 47472764, "end_pos": 47464905, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037406", "url": "https://www.ensembl.org/id/ENSSSCG00000037406" } ] } } ], "crossref": [ { "id": "A0A4X1VLL3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VLL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR006634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042512", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042512", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CEMASPK", "url": "https://omabrowser.org/oma/group/CEMASPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FJN2", "url": "https://www.orthodb.org/?gene=A0A8W4FJN2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31898", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31898", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31898:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31898:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VLL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VLL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJN2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALALCLQVLCSLGGWLSLYISFCRLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGSRLLFCEMVSSKPRWFVKVGGVAMYVVSWCFMFSIWRFAWRKSIKKYHAWRSRRSEERQLRHNGHLKMH", "length": 245, "header": "tr|A0A4X1VLL3-1|A0A4X1VLL3_PIG Isoform 1 of TLC domain containing 5 OS=Sus scrofa OX=9823 GN=TLCD5 PE=4 SV=1 CANONICAL=A0A4X1VLL3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VLL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3/entry", "sequence": { "sequence": "MALALCLQVLCSLGGWLSLYISFCRLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGSRLLFCEMVSSKPRWFVKVGGVAMYVVSWCFMFSIWRFAWRKSIKKYHAWRSRRSEERQLRHNGHLKMH", "length": 245, "header": "tr|A0A4X1VLL3-1|A0A4X1VLL3_PIG Isoform 1 of TLC domain containing 5 OS=Sus scrofa OX=9823 GN=TLCD5 PE=4 SV=1 CANONICAL=A0A4X1VLL3-1" }, "locus": { "chromosome": "9", "start_pos": 47470519, "end_pos": 47467141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060596.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060596.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048072.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048072.1" } ] } }, { "isoform_ac": "A0A8W4FIN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIN3/entry", "sequence": { "sequence": "MTQCCFLRVHPLSFWFWSFHRRMALALCLQVLCSLGGWLSLYISFCRLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGCIWRFAWRKSIKKYHAWRSRRSEERQLRHNGHLKMH", "length": 148, "header": "tr|A0A8W4FIN3-1|A0A8W4FIN3_PIG Computationally mapped isoform of TLC domain containing 5 OS=Sus scrofa OX=9823 GN=TLCD5 PE=4 SV=1 CANONICAL=A0A4X1VLL3-1" }, "locus": { "chromosome": "9", "start_pos": 47470519, "end_pos": 47467075, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091904.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091904.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078743.1" } ] } }, { "isoform_ac": "A0A8W4FJN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJN2/entry", "sequence": { "sequence": "MTQCCFLRVHPLSFWFWSFHRRMALALCLQVLCSLGGWLSLYISFCRLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGSRLLFCEMVSSKPRWFVKVGGVAMYVVSWCFMFSIWRFAWRKSIKKYHAWRSRRSEERQLRHNGHLKMH", "length": 267, "header": "tr|A0A8W4FJN2-1|A0A8W4FJN2_PIG Computationally mapped isoform of TLC domain containing 5 OS=Sus scrofa OX=9823 GN=TLCD5 PE=4 SV=1 CANONICAL=A0A4X1VLL3-1" }, "locus": { "chromosome": "9", "start_pos": 47470519, "end_pos": 47467075, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097262.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097262.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078514.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078514.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZZI2-1", "protein_name": "Transmembrane protein 136", "gene_name": "TMEM136", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLALPLRAACSLLAWLSLYVWFCHRYKHRSYEWSCRLVTLTHGILATCLSAYIGFIDGPWPLSHPGSPNTTLQVYGLCLSLGYFLFDLCWCVYFQTEGALMLAHHLVSIVGIAASLALGESAAEVNAVIFGSEITNPLLQARWFLKEMGCYHSLAGDVVDFFFVVLFTGVRIGVGAWLMYCELASPKPRWYIKLGGVIMYAVSWVFMVSICRFARRKSMKKYHAWRSQRGEELSLRTNGHLKSH", "length": 245 }, "evidence": [ { "id": "A0A4X1VLL3", "url": "https://omabrowser.org/oma/group/A0A4X1VLL3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZNW9-1", "protein_name": "TLC domain containing 5", "gene_name": "Tlcd5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVGLCVQVLCSLGGWLSLYTSLCGLNKHRSCEWSCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGALMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPTPRWFVKVGGVAMYAVSWCFMVSIWRFAWKKSVKKYHAWRSRRNEERQLRHNGHLKTH", "length": 245 }, "evidence": [ { "id": "A0A4X1VLL3", "url": "https://omabrowser.org/oma/group/A0A4X1VLL3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VD42-1", "protein_name": "TLC domain-containing protein 5", "gene_name": "TLCD5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALALCLQALCSLGGWLSLYVSFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEITNPLLQIRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVKVGGVAMYVVSWCFMFSIWRFAWRKSIKKYHTWRSRWSEERQLRLNGHLKTH", "length": 245 }, "evidence": [ { "id": "A0A4X1VLL3", "url": "https://omabrowser.org/oma/group/A0A4X1VLL3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3TYE7-1", "protein_name": "TLC domain-containing protein 5", "gene_name": "Tlcd5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVGLCVQVLCSLGGWLSLYTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPTPKWFVKVGGVAMYAVSWCFMVSIWRFAWKKSIKKYHAWRSRRNEERQLRHNGHLKTH", "length": 245 }, "evidence": [ { "id": "A0A4X1VLL3", "url": "https://omabrowser.org/oma/group/A0A4X1VLL3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZRR5-1", "protein_name": "TLC domain-containing protein 5", "gene_name": "TLCD5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALALCLQVLCSLCGWLSLYISFCHLNKHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGACLLFCEMVSPTPKWFVKAGGVAMYAVSWCFMFSIWRFAWRKSIKKYHAWRSRRSEERQLKHNGHLKIH", "length": 245 }, "evidence": [ { "id": "A0A4X1VLL3", "url": "https://omabrowser.org/oma/group/A0A4X1VLL3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLL3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VLL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLL3" }, { "id": "PS50922", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50922" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TLC", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 204, "start_aa": "His", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VMA5-1", "uniprot_ac": "A0A4X1VMA5", "uniprot_id": "A0A4X1VMA5_PIG", "mass": { "chemical_mass": 32660.0, "monoisotopic_mass": 32660.0 }, "refseq": { "ac": "XP_020953404", "name": "transmembrane protein 241 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953404" }, "gene_names": [ { "name": "TMEM241", "type": "recommended", "evidence": [ { "id": "A0A4X1VMA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ] }, { "name": "TMEM241", "type": "synonym", "evidence": [ { "id": "XP_020953404", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953404" } ] } ], "protein_names": [ { "name": "Transmembrane protein 241", "type": "synonym", "evidence": [ { "id": "A0A4X1VMA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 241 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020953404", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953404" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM241", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5", "locus": { "chromosome": "6", "start_pos": 108232864, "end_pos": 108329730, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040452", "url": "https://www.ensembl.org/id/ENSSSCG00000040452" } ] } } ], "crossref": [ { "id": "A0A4X1VMA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VMA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102167268", "url": "https://www.ncbi.nlm.nih.gov/gene/102167268", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WAIIHLF", "url": "https://omabrowser.org/oma/group/WAIIHLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020953404", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953404", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDD1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCMRRCLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGILLHASWKLGWAEINSSSRSDVLTWLPASLLFVGIIYAGSRALSRLAIPVFLTLHNVAEVIICGHQKCFRKEKTSPAKICSALFLLAAAGCLPFNDSQYDPDGYFWAVIHFFCVGAYKILQKSQKPTTLSDIDQQYLNYLFSVVFLALASHPTGDLLSVLDFPFLSFYRFHGSCCASGFLGFFLMFSTVKLKSLMAPGQCAAWIFCAKVITAALSILLFDTILTRGTVGCLLLGGLGEALLVFSEQRGS", "length": 296, "header": "tr|A0A4X1VMA5-1|A0A4X1VMA5_PIG Isoform 1 of Transmembrane protein 241 OS=Sus scrofa OX=9823 GN=TMEM241 PE=4 SV=1 CANONICAL=A0A4X1VMA5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5/entry", "sequence": { "sequence": "MCMRRCLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGILLHASWKLGWAEINSSSRSDVLTWLPASLLFVGIIYAGSRALSRLAIPVFLTLHNVAEVIICGHQKCFRKEKTSPAKICSALFLLAAAGCLPFNDSQYDPDGYFWAVIHFFCVGAYKILQKSQKPTTLSDIDQQYLNYLFSVVFLALASHPTGDLLSVLDFPFLSFYRFHGSCCASGFLGFFLMFSTVKLKSLMAPGQCAAWIFCAKVITAALSILLFDTILTRGTVGCLLLGGLGEALLVFSEQRGS", "length": 296, "header": "tr|A0A4X1VMA5-1|A0A4X1VMA5_PIG Isoform 1 of Transmembrane protein 241 OS=Sus scrofa OX=9823 GN=TMEM241 PE=4 SV=1 CANONICAL=A0A4X1VMA5-1" }, "locus": { "chromosome": "6", "start_pos": 108329641, "end_pos": 108235546, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084626.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084626.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066738.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066738.1" } ] } }, { "isoform_ac": "A0A5G2QZ17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ17/entry", "sequence": { "sequence": "MCMRRCLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGILLHASWKLGWAEINSSSRSDVLTWLPASLLFVGIIYAGSRALSRLAIPVFLTLHNVAEVIICGHQKCFRKEKTSPAKICRLLLEGEKKQSGLFSCLKD", "length": 146, "header": "tr|A0A5G2QZ17-1|A0A5G2QZ17_PIG Computationally mapped isoform of Transmembrane protein 241 OS=Sus scrofa OX=9823 GN=TMEM241 PE=4 SV=1 CANONICAL=A0A4X1VMA5-1" }, "locus": { "chromosome": "6", "start_pos": 108329641, "end_pos": 108287361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069078.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069078.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070141.1" } ] } }, { "isoform_ac": "A0A8W4FDD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDD1/entry", "sequence": { "sequence": "MCMRRCLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGILLHASWKLGWAEINSSSRSDVLTWLPASLLFVGIIYAGSRALSRLAIPVFLTLHNVAEVIICGHQKCFRKEEISKMCFLFMAQVSVCLFLPSVSSPDCLTVVTNFKNLLTSLQFI", "length": 163, "header": "tr|A0A8W4FDD1-1|A0A8W4FDD1_PIG Computationally mapped isoform of Transmembrane protein 241 OS=Sus scrofa OX=9823 GN=TMEM241 PE=4 SV=1 CANONICAL=A0A4X1VMA5-1" }, "locus": { "chromosome": "6", "start_pos": 108329641, "end_pos": 108294155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097331.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097331.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076315.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076315.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LFG1-1", "protein_name": "Transmembrane protein 241", "gene_name": "Slc35d4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNLRRSLLGFTFCTCYLASHLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHMSWKLGWVEINSSLRSDVLTWLPASVLFVGIIYAGSKALSRLAVPVFLILHNAAEVLTCGFQKCVWKEKTSLSKICSALFLLAAAVCLPFQDSQFDPDGYFWALIHFFCVGSYKILRRSRKPTVLSDIDQQYLNYIFSMVLLAFASHPTGDLFRAMDFPFLYFYSFYGSCCASGVLGFFLMLSTVKLRNILAPGQCAAWIFFAKVVTAGLSLLLFDMTLTRATVGWLSSGRAHLNDRLVTAWPMLQDKSQFCTNDQFNHSLKCSLSQLQKPQDTDHASYPQYRLL", "length": 336 }, "evidence": [ { "id": "A0A4X1VMA5", "url": "https://omabrowser.org/oma/group/A0A4X1VMA5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q24JQ0-1", "protein_name": "UDP-N-acetylglucosamine transporter SLC35D4", "gene_name": "SLC35D4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCVRRSLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGIIYAGSRALSRLAIPVFLTLHNVAEVIICGYQKCFQKEKTSPAKICSALLLLAAAGCLPFNDSQFNPDGYFWAIIHLLCVGAYKILQKSQKPSALSDIDQQYLNYIFSVVLLAFASHPTGDLFSVLDFPFLYFYRFHGSCCASGFLGFFLMFSTVKLKNLLAPGQCAAWIFFAKIITAGLSILLFDAILTSATTGCLLLGALGEALLVFSERKSS", "length": 296 }, "evidence": [ { "id": "A0A4X1VMA5", "url": "https://omabrowser.org/oma/group/A0A4X1VMA5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3UME2-1", "protein_name": "UDP-N-acetylglucosamine transporter SLC35D4", "gene_name": "Slc35d4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVRRSLLGLTFCTCYLASHLTNKYVLSVLKFTYPTLFQGWQTFIGGLLLHMSWKLGWVELHSSPRSDVLIWLPASALFVGIIYAGSKALSRLAVPVFFILHNVAEVLTCGYQKCVWKEKTSLSKICSALFLLAAAGCLPFQDSQFDPDGYFWALIHIFCVGSYKILRKSRKPTVLSDIDQQYLNYIFSMVLLAFASHPTGDLFGALDFPFLYFYRFHGSCCASGVLGFFLMLSTVRLRSILAPGQCAAWILCAKVVTAGLSMLLFDMALTKATVGCFLLGGLGEALLVFSERRSSS", "length": 297 }, "evidence": [ { "id": "A0A4X1VMA5", "url": "https://omabrowser.org/oma/group/A0A4X1VMA5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "UDP-N-acetylglucosamine transmembrane transporter activity", "id": "GO:0005462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005462", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMA5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VMI2-1", "uniprot_ac": "A0A4X1VMI2", "uniprot_id": "A0A4X1VMI2_PIG", "mass": { "chemical_mass": 10247.0, "monoisotopic_mass": 10247.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Chromosome transmission fidelity factor 8", "type": "synonym", "evidence": [ { "id": "A0A4X1VMI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2", "locus": {} } ], "crossref": [ { "id": "A0A4X1VMI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VMI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VMI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VMI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQIVISSAGAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEVRGLFFPCLMPQESKLHQGGAPRTQSEDCLRFVVQGLASLLVLPPHPQ", "length": 95, "header": "tr|A0A4X1VMI2-1|A0A4X1VMI2_PIG Isoform 1 of Chromosome transmission fidelity factor 8 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VMI2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VMI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2/entry", "sequence": { "sequence": "MVQIVISSAGAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEVRGLFFPCLMPQESKLHQGGAPRTQSEDCLRFVVQGLASLLVLPPHPQ", "length": 95, "header": "tr|A0A4X1VMI2-1|A0A4X1VMI2_PIG Isoform 1 of Chromosome transmission fidelity factor 8 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VMI2-1" }, "locus": { "chromosome": "6", "start_pos": 17841401, "end_pos": 17840859, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071913.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071913.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068519.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068519.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VMK5-1", "uniprot_ac": "A0A4X1VMK5", "uniprot_id": "A0A4X1VMK5_PIG", "mass": { "chemical_mass": 23563.0, "monoisotopic_mass": 23563.0 }, "refseq": { "ac": "NP_001230287", "name": "membrane-spanning 4-domains subfamily A member 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230287" }, "gene_names": [ { "name": "MS4A7", "type": "recommended", "evidence": [ { "id": "A0A4X1VMK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ] }, { "name": "MS4A7", "type": "synonym", "evidence": [ { "id": "NP_001230287", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230287" } ] } ], "protein_names": [ { "name": "Membrane spanning 4-domains A7", "type": "synonym", "evidence": [ { "id": "A0A4X1VMK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5/entry#names_and_taxonomy" } ] }, { "name": "membrane-spanning 4-domains subfamily A member 7", "type": "synonym", "evidence": [ { "id": "NP_001230287", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230287" } ] }, { "name": "membrane-spanning 4-domains, subfamily A, member 7", "type": "synonym", "evidence": [ { "id": "NP_001230287", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230287" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MS4A7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5", "locus": { "chromosome": "2", "start_pos": 11297334, "end_pos": 11320130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013102", "url": "https://www.ensembl.org/id/ENSSSCG00000013102" } ] } } ], "crossref": [ { "id": "A0A4X1VMK5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VMK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100628141", "url": "https://www.ncbi.nlm.nih.gov/gene/100628141", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100628141", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628141", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PYSSHFN", "url": "https://omabrowser.org/oma/group/PYSSHFN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VMK5", "url": "https://www.orthodb.org/?gene=A0A4X1VMK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23320", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23320", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23320:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23320:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230287", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230287", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VMK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSLLKTKGAFDTFTSKGIIIPKGGKPQHAYQKEDNLQDRLQREATVLGTIQIMCCLVISSVGATLVSAPHSPRFSPAVSTILMSGYPFLGALCFAITGSLSIISGKKSTKPFATSSLTSNAVSSVAAGAGLLLLMDSLVALGTASQQCDSEKDYLSSLPYSEYYYSTVKDCLLTSASLTGALVVMLIFTVLELLLSAYASILWWKQVYSNNPGCAFSLSQS", "length": 222, "header": "tr|A0A4X1VMK5-1|A0A4X1VMK5_PIG Isoform 1 of Membrane spanning 4-domains A7 OS=Sus scrofa OX=9823 GN=MS4A7 PE=3 SV=1 CANONICAL=A0A4X1VMK5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VMK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5/entry", "sequence": { "sequence": "MLSLLKTKGAFDTFTSKGIIIPKGGKPQHAYQKEDNLQDRLQREATVLGTIQIMCCLVISSVGATLVSAPHSPRFSPAVSTILMSGYPFLGALCFAITGSLSIISGKKSTKPFATSSLTSNAVSSVAAGAGLLLLMDSLVALGTASQQCDSEKDYLSSLPYSEYYYSTVKDCLLTSASLTGALVVMLIFTVLELLLSAYASILWWKQVYSNNPGCAFSLSQS", "length": 222, "header": "tr|A0A4X1VMK5-1|A0A4X1VMK5_PIG Isoform 1 of Membrane spanning 4-domains A7 OS=Sus scrofa OX=9823 GN=MS4A7 PE=3 SV=1 CANONICAL=A0A4X1VMK5-1" }, "locus": { "chromosome": "2", "start_pos": 11313910, "end_pos": 11297534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014322.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014322.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013936.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013936.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100628141", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628141", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9GZW8-1", "protein_name": "Membrane-spanning 4-domains subfamily A member 7", "gene_name": "MS4A7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLQSQTMGVSHSFTPKGITIPQREKPGHMYQNEDYLQNGLPTETTVLGTVQILCCLLISSLGAILVFAPYPSHFNPAISTTLMSGYPFLGALCFGITGSLSIISGKQSTKPFDLSSLTSNAVSSVTAGAGLFLLADSMVALRTASQHCGSEMDYLSSLPYSEYYYPIYEIKDCLLTSVSLTGVLVVMLIFTVLELLLAAYSSVFWWKQLYSNNPGSSFSSTQSQDHIQQVKKSSSRSWI", "length": 240 }, "evidence": [ { "id": "A0A4X1VMK5", "url": "https://omabrowser.org/oma/group/A0A4X1VMK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VMU1-1", "uniprot_ac": "A0A4X1VMU1", "uniprot_id": "A0A4X1VMU1_PIG", "mass": { "chemical_mass": 12874.0, "monoisotopic_mass": 12874.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VMU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMU1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1", "locus": {} } ], "crossref": [ { "id": "A0A4X1VMU1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VMU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VMU1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VMU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTEWRYLRKLYIELPYDPAIPLLGMYLDKTFLEKDTCTHIFIAALYTIAKSWKQPQCPLTDDWGLGRCGIYTQ", "length": 109, "header": "tr|A0A4X1VMU1-1|A0A4X1VMU1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VMU1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VMU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1/entry", "sequence": { "sequence": "MAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTEWRYLRKLYIELPYDPAIPLLGMYLDKTFLEKDTCTHIFIAALYTIAKSWKQPQCPLTDDWGLGRCGIYTQ", "length": 109, "header": "tr|A0A4X1VMU1-1|A0A4X1VMU1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VMU1-1" }, "locus": { "chromosome": "18", "start_pos": 15288762, "end_pos": 15288436, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079103.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079103.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065479.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065479.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMU1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMU1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VNA7-1", "uniprot_ac": "A0A4X1VNA7", "uniprot_id": "A0A4X1VNA7_PIG", "mass": { "chemical_mass": 7475.0, "monoisotopic_mass": 7475.0 }, "refseq": { "ac": "XP_003125705", "name": "Purkinje cell protein 4-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125705" }, "gene_names": [ { "name": "PCP4L1", "type": "recommended", "evidence": [ { "id": "A0A4X1VNA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7" } ] }, { "name": "PCP4L1", "type": "synonym", "evidence": [ { "id": "XP_003125705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125705" } ] } ], "protein_names": [ { "name": "Purkinje cell protein 4 like 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VNA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7/entry#names_and_taxonomy" } ] }, { "name": "Purkinje cell protein 4-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_003125705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125705" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCP4L1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7", "locus": { "chromosome": "4", "start_pos": 89186447, "end_pos": 89213114, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031579", "url": "https://www.ensembl.org/id/ENSSSCG00000031579" } ] } } ], "crossref": [ { "id": "A0A4X1VNA7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VNA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100523600", "url": "https://www.ncbi.nlm.nih.gov/gene/100523600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523600", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSERGHT", "url": "https://omabrowser.org/oma/group/MSERGHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15359:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15359:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003125705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125705", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VNA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFE8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSELNTKTSPATNQASVPEEKGKAGNAKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS", "length": 68, "header": "tr|A0A4X1VNA7-1|A0A4X1VNA7_PIG Isoform 1 of Purkinje cell protein 4 like 1 OS=Sus scrofa OX=9823 GN=PCP4L1 PE=1 SV=1 CANONICAL=A0A4X1VNA7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VNA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7/entry", "sequence": { "sequence": "MSELNTKTSPATNQASVPEEKGKAGNAKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS", "length": 68, "header": "tr|A0A4X1VNA7-1|A0A4X1VNA7_PIG Isoform 1 of Purkinje cell protein 4 like 1 OS=Sus scrofa OX=9823 GN=PCP4L1 PE=1 SV=1 CANONICAL=A0A4X1VNA7-1" }, "locus": { "chromosome": "4", "start_pos": 89212613, "end_pos": 89187906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041072.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041072.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050242.1" } ] } }, { "isoform_ac": "A0A8W4FFE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE8/entry", "sequence": { "sequence": "LFQLNTKTSPATNQASVPEEKGKAGNAKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS", "length": 68, "header": "tr|A0A8W4FFE8-1|A0A8W4FFE8_PIG Computationally mapped isoform of Purkinje cell protein 4 like 1 OS=Sus scrofa OX=9823 GN=PCP4L1 PE=1 SV=1 CANONICAL=A0A4X1VNA7-1" }, "locus": { "chromosome": "4", "start_pos": 89189010, "end_pos": 89187906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096136.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096136.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077965.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077965.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523600", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AUS6-1", "protein_name": "Purkinje cell protein 4-like 1", "gene_name": "Pcp4l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCSGQESQLNTKTPPATSQASDPEEKGKPGSIKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDSSS", "length": 73 }, "evidence": [ { "id": "A0A4X1VNA7", "url": "https://omabrowser.org/oma/group/A0A4X1VNA7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NKN8-1", "protein_name": "Purkinje cell protein 4-like protein 1", "gene_name": "PCP4L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSELNTKTSPATNQAAGQEEKGKAGNVKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS", "length": 68 }, "evidence": [ { "id": "A0A4X1VNA7", "url": "https://omabrowser.org/oma/group/A0A4X1VNA7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A8R4Q8-1", "protein_name": "Purkinje cell protein 4-like protein 1", "gene_name": "PCP4L1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSELNTKTSPATNQAPGPEEKGKAGSAKKTEDEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS", "length": 69 }, "evidence": [ { "id": "A0A4X1VNA7", "url": "https://omabrowser.org/oma/group/A0A4X1VNA7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6W8Q3-1", "protein_name": "Purkinje cell protein 4-like protein 1", "gene_name": "Pcp4l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSELNTKTPPAANQASDPEEKGKPGSIKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDSSS", "length": 68 }, "evidence": [ { "id": "A0A4X1VNA7", "url": "https://omabrowser.org/oma/group/A0A4X1VNA7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VND3-1", "uniprot_ac": "A0A4X1VND3", "uniprot_id": "A0A4X1VND3_PIG", "mass": { "chemical_mass": 13550.0, "monoisotopic_mass": 13550.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VND3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VND3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3", "locus": {} } ], "crossref": [ { "id": "A0A4X1VND3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VND3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ANSQWIW", "url": "https://omabrowser.org/oma/group/ANSQWIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VND3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VND3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILAFQANNQWTWFQRIMQEAFSRRFWICFYLFYAAIIILFLGSVLITLFSGHTPFSLVKTMIVIGLVFFCLTGLMYLQEANKVLAFTQEKFSRNGISQDPFKALEMEKPTVTVIAS", "length": 117, "header": "tr|A0A4X1VND3-1|A0A4X1VND3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VND3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VND3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3/entry", "sequence": { "sequence": "MILAFQANNQWTWFQRIMQEAFSRRFWICFYLFYAAIIILFLGSVLITLFSGHTPFSLVKTMIVIGLVFFCLTGLMYLQEANKVLAFTQEKFSRNGISQDPFKALEMEKPTVTVIAS", "length": 117, "header": "tr|A0A4X1VND3-1|A0A4X1VND3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VND3-1" }, "locus": { "chromosome": "3", "start_pos": 31300477, "end_pos": 31300127, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036835.1", "url": "https://www.ensembl.org/id/ENSSSCT00000036835.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037696.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037696.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VND3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VND3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VNH5-1", "uniprot_ac": "A0A4X1VNH5", "uniprot_id": "A0A4X1VNH5_PIG", "mass": { "chemical_mass": 22268.0, "monoisotopic_mass": 22268.0 }, "refseq": {}, "gene_names": [ { "name": "MS4A5", "type": "recommended", "evidence": [ { "id": "A0A4X1VNH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5" } ] } ], "protein_names": [ { "name": "Membrane spanning 4-domains A5", "type": "synonym", "evidence": [ { "id": "A0A4X1VNH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MS4A5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5", "locus": { "chromosome": "2", "start_pos": 11234294, "end_pos": 11258449, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026796", "url": "https://www.ensembl.org/id/ENSSSCG00000026796" } ] } } ], "crossref": [ { "id": "A0A4X1VNH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VNH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR007237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23320", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23320", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23320:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23320:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VNH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSNAAHHPVFLIFPPEITVPEYQSTELTGTTYESSMPFPEMLTKRMKILGTIQILFGLMNFSFGIVLLFAFEKPYPRFPFIFLSGYPFWSSVLFINSGAFLVALERKTTETLMMLSRTMNSLSALAATAGIVLLVFGFILDQNFFCGYSEEISQCQSVNTLFTGILIMLMAFSIIELLIALSFSILRGHSLDREECC", "length": 198, "header": "tr|A0A4X1VNH5-1|A0A4X1VNH5_PIG Isoform 1 of Membrane spanning 4-domains A5 OS=Sus scrofa OX=9823 GN=MS4A5 PE=3 SV=1 CANONICAL=A0A4X1VNH5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VNH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5/entry", "sequence": { "sequence": "MDSNAAHHPVFLIFPPEITVPEYQSTELTGTTYESSMPFPEMLTKRMKILGTIQILFGLMNFSFGIVLLFAFEKPYPRFPFIFLSGYPFWSSVLFINSGAFLVALERKTTETLMMLSRTMNSLSALAATAGIVLLVFGFILDQNFFCGYSEEISQCQSVNTLFTGILIMLMAFSIIELLIALSFSILRGHSLDREECC", "length": 198, "header": "tr|A0A4X1VNH5-1|A0A4X1VNH5_PIG Isoform 1 of Membrane spanning 4-domains A5 OS=Sus scrofa OX=9823 GN=MS4A5 PE=3 SV=1 CANONICAL=A0A4X1VNH5-1" }, "locus": { "chromosome": "2", "start_pos": 11258250, "end_pos": 11234297, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024223.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024223.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025079.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025079.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VPT0-1", "uniprot_ac": "A0A4X1VPT0", "uniprot_id": "A0A4X1VPT0_PIG", "mass": { "chemical_mass": 45500.0, "monoisotopic_mass": 45500.0 }, "refseq": { "ac": "XP_001924263", "name": "transmembrane protein 184B isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924263" }, "gene_names": [ { "name": "TMEM184B", "type": "recommended", "evidence": [ { "id": "A0A4X1VPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0" } ] }, { "name": "TMEM184B", "type": "synonym", "evidence": [ { "id": "XP_001924263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924263" } ] } ], "protein_names": [ { "name": "Transmembrane protein 184B", "type": "synonym", "evidence": [ { "id": "A0A4X1VPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 184B isoform X3", "type": "synonym", "evidence": [ { "id": "XP_001924263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924263" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM184B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0", "locus": { "chromosome": "5", "start_pos": 9682115, "end_pos": 9633554, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000108", "url": "https://www.ensembl.org/id/ENSSSCG00000000108" } ] } } ], "crossref": [ { "id": "A0A4X1VPT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VPT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000108", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000108", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157699", "url": "https://www.ncbi.nlm.nih.gov/gene/100157699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157699", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157699", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IIKPIMA", "url": "https://omabrowser.org/oma/group/IIKPIMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VNL2", "url": "https://www.orthodb.org/?gene=A0A4X1VNL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VPT0", "url": "https://www.orthodb.org/?gene=A0A4X1VPT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03619", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03619", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924263", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924263", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BRG7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VPT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VPT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVRGAVLAPDPASPTTAAASPSISVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCVYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407, "header": "tr|A0A4X1VPT0-1|A0A4X1VPT0_PIG Isoform 1 of Transmembrane protein 184B OS=Sus scrofa OX=9823 GN=TMEM184B PE=4 SV=1 CANONICAL=A0A4X1VPT0-1" }, "isoforms": [ { "isoform_ac": "A0A287BRG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRG7/entry", "sequence": { "sequence": "MVPSGAKSCSPPKEGVSPCNGGRYRLPSPSGREDCVRGRSGGTAKEPPHHPESLPVPQKWQRWLVPPPRSPFVQARLSQPSSPPCKVLGGSPPLCEAHLLATPSPRGLSCGVYRQHGSCSEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCVYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 409, "header": "tr|A0A287BRG7-1|A0A287BRG7_PIG Computationally mapped isoform of Transmembrane protein 184B OS=Sus scrofa OX=9823 GN=TMEM184B PE=4 SV=3 CANONICAL=A0A4X1VPT0-1" }, "locus": { "chromosome": "5", "start_pos": 9679972, "end_pos": 9660842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065929.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065929.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058715.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058715.3" } ] } }, { "isoform_ac": "A0A4X1VNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNL2/entry", "sequence": { "sequence": "MTVRGAVLAPDPASPTTAAASPSISVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCVYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQVPTYGPYGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 414, "header": "tr|A0A4X1VNL2-1|A0A4X1VPT0_PIG Computationally mapped isoform of Transmembrane protein 184B OS=Sus scrofa OX=9823 GN=TMEM184B PE=4 SV=1 CANONICAL=A0A4X1VPT0-1" }, "locus": { "chromosome": "5", "start_pos": 9679972, "end_pos": 9657467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000114.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000114.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000112.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000112.3" } ] } }, { "isoform_ac": "A0A4X1VPT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0/entry", "sequence": { "sequence": "MTVRGAVLAPDPASPTTAAASPSISVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCVYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407, "header": "tr|A0A4X1VPT0-1|A0A4X1VPT0_PIG Isoform 1 of Transmembrane protein 184B OS=Sus scrofa OX=9823 GN=TMEM184B PE=4 SV=1 CANONICAL=A0A4X1VPT0-1" }, "locus": { "chromosome": "5", "start_pos": 9679972, "end_pos": 9657467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038876.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038876.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040643.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040643.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157699", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157699", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VDL9-1", "protein_name": "Transmembrane protein 184B", "gene_name": "TMEM184B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTVRGAALAPDPASPTTAAASPSISVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRVDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IDX1-1", "protein_name": "Transmembrane protein 184B isoform X1", "gene_name": "Tmem184b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTMRGAALAPDPASPTTAAASSGVSATPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYAHLRCYRCPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTIRDCYEAFVIYNFLSLCYEYLGGESAIMSEIRGKAIESSCMYGTCCLWGRTYSIGFLRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMSPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGTHSLSRSHSLSCARDNEKTLLLSSDDEF", "length": 407 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3V924-1", "protein_name": "Transmembrane protein 184B", "gene_name": "Tmem184b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVRGAALAPDPASPTTTAASPSVSATPEGSPTAMEHPVFLMTTAAQATSGFFVWTALLITCHQIYMHLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEAFVIYNFLSLCYEYLGGESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSARVSVGEGTVAAGYQDFIICIEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGTHSLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54WM0-1", "protein_name": "Transmembrane protein 184 homolog DDB_G0279555", "gene_name": "tmem184C", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWIVAGVCSGVAILLSFYLIYKHLRNYTNPELQKYIVRILIMVPIYSVDSWLSLRFVELSLYFDVVRDTYEAYVLYCFFSLIVAYIERDFDLVELLHSKEPLPHPFPLTCLPKIKLDRGFLTNCKRFVLQFVFIKPIVAIISLVLETQHKYGEGKFQVGTGYVWLTVVENISVGLSLYFLVLYYKAMEEELKPFKPLGKFLCIKSILFFSFWQSIAISFLVYFGVISPIGSWSVDNISSALQDFITCVEMVILAICHHFFFNYQEFRDPHKVPFIYDKTTKTFFNNPKTNITPIIKNFFTNVTNISDVISDTRETFILPLLSPDHHHNHPTTKKKDEESNLLEPEDKDIII", "length": 351 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BG09-1", "protein_name": "Transmembrane protein 184B", "gene_name": "Tmem184b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTVRGAALAPDPASPTTTTASPSVSATPEGSPTAMEHPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEAFVIYNFLSLCYEYLGGESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVILQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGTHSLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y519-1", "protein_name": "Transmembrane protein 184B", "gene_name": "TMEM184B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF", "length": 407 }, "evidence": [ { "id": "A0A4X1VPT0", "url": "https://omabrowser.org/oma/group/A0A4X1VPT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 219, "end_pos": 221 }, { "start_pos": 356, "end_pos": 358 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VNM5-1", "uniprot_ac": "A0A4X1VNM5", "uniprot_id": "A0A4X1VNM5_PIG", "mass": { "chemical_mass": 15184.0, "monoisotopic_mass": 15184.0 }, "refseq": {}, "gene_names": [ { "name": "ACOT13", "type": "recommended", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ] } ], "protein_names": [ { "name": "Acyl-coenzyme A thioesterase 13", "type": "recommended", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry#names_and_taxonomy" } ] }, { "name": "3.1.2.2", "type": "synonym", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry#names_and_taxonomy" } ] }, { "name": "Hotdog-fold thioesterase superfamily member 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry#names_and_taxonomy" } ] }, { "name": "Palmitoyl-CoA hydrolase", "type": "synonym", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry#names_and_taxonomy" } ] }, { "name": "Thioesterase superfamily member 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the hydrolysis of acyl-CoAs into free fatty acids and coenzyme A (CoASH), regulating their respective intracellular levels. Has acyl-CoA thioesterase activity towards medium (C12) and long-chain (C18) fatty acyl-CoA substrates. Can also hydrolyze 3-hydroxyphenylacetyl-CoA and 3,4-dihydroxyphenylacetyl-CoA (in vitro). May play a role in controlling adaptive thermogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5#function" }, { "database": "UniProtKB", "id": "ARBA00058205", "url": "https://www.uniprot.org/uniprotkb/ARBA00058205#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACOT13", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5", "locus": { "chromosome": "7", "start_pos": 19510810, "end_pos": 19502627, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036411", "url": "https://www.ensembl.org/id/ENSSSCG00000036411" } ] } } ], "crossref": [ { "id": "A0A4X1VNM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VNM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03443", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03443", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KQIMRAM", "url": "https://omabrowser.org/oma/group/KQIMRAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21660:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21660:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-77289", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "16645", "url": "https://www.rhea-db.org/rhea/16645", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "16781", "url": "https://www.rhea-db.org/rhea/16781", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "30135", "url": "https://www.rhea-db.org/rhea/30135", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "30143", "url": "https://www.rhea-db.org/rhea/30143", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40059", "url": "https://www.rhea-db.org/rhea/40059", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40111", "url": "https://www.rhea-db.org/rhea/40111", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40115", "url": "https://www.rhea-db.org/rhea/40115", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40119", "url": "https://www.rhea-db.org/rhea/40119", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40139", "url": "https://www.rhea-db.org/rhea/40139", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCMTKNLQEVLKLLGKSSCFDRILEKMTVVSAVPGKVICEMKVEEEHTNKMGTLHGGMTATLVDCVSTYALLCTERGAPGVSVDMNITYMSPAKMGEDILITAHILKQGKTLAFASVDLTNKVTGKLIAQGRHTKHLGTA", "length": 141, "header": "tr|A0A4X1VNM5-1|A0A4X1VNM5_PIG Isoform 1 of Acyl-coenzyme A thioesterase 13 OS=Sus scrofa OX=9823 GN=ACOT13 PE=1 SV=1 CANONICAL=A0A4X1VNM5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VNM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5/entry", "sequence": { "sequence": "MSCMTKNLQEVLKLLGKSSCFDRILEKMTVVSAVPGKVICEMKVEEEHTNKMGTLHGGMTATLVDCVSTYALLCTERGAPGVSVDMNITYMSPAKMGEDILITAHILKQGKTLAFASVDLTNKVTGKLIAQGRHTKHLGTA", "length": 141, "header": "tr|A0A4X1VNM5-1|A0A4X1VNM5_PIG Isoform 1 of Acyl-coenzyme A thioesterase 13 OS=Sus scrofa OX=9823 GN=ACOT13 PE=1 SV=1 CANONICAL=A0A4X1VNM5-1" }, "locus": { "chromosome": "7", "start_pos": 19505846, "end_pos": 19502763, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051683.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051683.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048575.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-77289", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "resource": "Reactome", "description": "Mitochondrial Fatty Acid Beta-Oxidation" } ], "orthologs": [ { "uniprot_canonical_ac": "C7G041-1", "protein_name": "Acyl-coenzyme A thioesterase 13", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MANMIIKSNDEKLKNQLADLLNKWTKFEGFDKQFLELCTCEKLEKGKVVMSMTVDEKYCNVLSNLHGGAIATLTDVISSIAILTTNLDAIVPSVSVEISMVYSNPAPVDRKIFIVSSVYKSGRNLAFTETTIYLDSEDSGIVIAKGSHTKFIVNKKAKL", "length": 159 }, "evidence": [ { "id": "A0A4X1VNM5", "url": "https://omabrowser.org/oma/group/A0A4X1VNM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "D3ZA93-1", "protein_name": "Acyl-coenzyme A thioesterase 13", "gene_name": "Acot13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSNMTQNLREIMKVTLVSAAPEKLICEMKVEEQHTNKFGTLHGGLTATLVDSISTMALMCTERGAPGVSIDMNITYMSPAKIGEEIVITAHILKQGRTLAFASVDLTNKATGKLIAQGRHTKHLGN", "length": 126 }, "evidence": [ { "id": "A0A4X1VNM5", "url": "https://omabrowser.org/oma/group/A0A4X1VNM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HDW4-1", "protein_name": "Acyl-coenzyme A thioesterase 13", "gene_name": "Acot13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSMTQNIRELMKVLFRVPGFDRVLEKVTLVSAAPEKLVCEMKVEEQHANKFGTLHGGLTATLIDSISTVALMCTERGAPGVSVDMNITYMSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKHLGN", "length": 140 }, "evidence": [ { "id": "A0A4X1VNM5", "url": "https://omabrowser.org/oma/group/A0A4X1VNM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9CQR4-1", "protein_name": "Acyl-coenzyme A thioesterase 13", "gene_name": "Acot13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSMTQNLREVMKVMFKVPGFDRVLEKVTLVSAAPEKLICEMKVEEQHTNKLGTLHGGLTATLVDSISTMALMCTERGAPGVSVDMNITYMSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKHLGN", "length": 140 }, "evidence": [ { "id": "A0A4X1VNM5", "url": "https://omabrowser.org/oma/group/A0A4X1VNM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VZZ6-1", "protein_name": "Thioesterase domain-containing protein", "gene_name": "BcDNA:RE30174", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAAKKLGMDFVKQMSEYASGSNGFDRVLKMIKITGGGDGRAIGEFTVANEHLNRQGTLHGGLTATIVDNCTTYALMSKGSHPGVTANLNVSYIAAAKPGELIEIDCNTVRAGKKMAYLDCILRRKSDGKIIAKGGQVKYIQFDKEKLDF", "length": 149 }, "evidence": [ { "id": "A0A4X1VNM5", "url": "https://omabrowser.org/oma/group/A0A4X1VNM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" }, { "name": "negative regulation of cold-induced thermogenesis", "id": "GO:0120163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120163", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "fatty acyl-CoA hydrolase activity", "id": "GO:0047617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047617", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16645", "name": "", "equation": "hexadecanoyl-CoA + H2O = hexadecanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16645", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16645" } ] }, { "id": "16781", "name": "", "equation": "a fatty acyl-CoA + H2O = a fatty acid + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16781", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16781" } ] }, { "id": "30135", "name": "", "equation": "dodecanoyl-CoA + H2O = dodecanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30135", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30135" } ] }, { "id": "30143", "name": "", "equation": "octanoyl-CoA + H2O = octanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30143", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30143" } ] }, { "id": "40059", "name": "", "equation": "decanoyl-CoA + H2O = decanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40059", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40059" } ] }, { "id": "40111", "name": "", "equation": "butanoyl-CoA + H2O = butanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40111", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40111" } ] }, { "id": "40115", "name": "", "equation": "hexanoyl-CoA + H2O = hexanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40115", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40115" } ] }, { "id": "40119", "name": "", "equation": "tetradecanoyl-CoA + H2O = tetradecanoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40119", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40119" } ] }, { "id": "40139", "name": "", "equation": "(9Z)-octadecenoyl-CoA + H2O = (9Z)-octadecenoate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40139", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40139" } ] }, { "id": "R-SSC-5690043", "name": "Cytosolic ACOTs hydrolyse MCFA-CoA, LCFA-CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5690043", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690043" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VNM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNM5" }, { "id": "PF03061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioesterase", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 125, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VNZ4-1", "uniprot_ac": "A0A4X1VNZ4", "uniprot_id": "A0A4X1VNZ4_PIG", "mass": { "chemical_mass": 15275.0, "monoisotopic_mass": 15275.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Proteolipid protein 2", "type": "recommended", "evidence": [ { "id": "A0A4X1VNZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in cell differentiation in the intestinal epithelium.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNZ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4#function" }, { "database": "UniProtKB", "id": "ARBA00037152", "url": "https://www.uniprot.org/uniprotkb/ARBA00037152#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNZ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4", "locus": {} } ], "crossref": [ { "id": "A0A4X1VNZ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VNZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VNZ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VNZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADSRHPSAPSCWTTCTNFLCTQKGILLFAQIIMCVSILTLFSASAPGYSSLSVIELICTCIFFVVYMCDLHTKIQFIHWPWSDFFRAFIAAILYLITSIVVLVERGSRSRITAGVLGLIAASLFGYDAYVTFPLRQ", "length": 137, "header": "tr|A0A4X1VNZ4-1|A0A4X1VNZ4_PIG Isoform 1 of Proteolipid protein 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VNZ4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VNZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4/entry", "sequence": { "sequence": "MADSRHPSAPSCWTTCTNFLCTQKGILLFAQIIMCVSILTLFSASAPGYSSLSVIELICTCIFFVVYMCDLHTKIQFIHWPWSDFFRAFIAAILYLITSIVVLVERGSRSRITAGVLGLIAASLFGYDAYVTFPLRQ", "length": 137, "header": "tr|A0A4X1VNZ4-1|A0A4X1VNZ4_PIG Isoform 1 of Proteolipid protein 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VNZ4-1" }, "locus": { "chromosome": "6", "start_pos": 106335660, "end_pos": 106335250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094685.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094685.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076793.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076793.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNZ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VNZ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VNZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VNZ4" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 137, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VR21-1", "uniprot_ac": "A0A4X1VR21", "uniprot_id": "A0A4X1VR21_PIG", "mass": { "chemical_mass": 12821.0, "monoisotopic_mass": 12821.0 }, "refseq": { "ac": "XP_005654795", "name": "Purkinje cell protein 2 homolog isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654795" }, "gene_names": [ { "name": "PCP2", "type": "recommended", "evidence": [ { "id": "A0A4X1VR21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21" } ] }, { "name": "PCP2", "type": "synonym", "evidence": [ { "id": "XP_005654795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654795" } ] } ], "protein_names": [ { "name": "Purkinje cell protein 2 homolog isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005654795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654795" } ] }, { "name": "Purkinje cell protein 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VR21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May function as a cell-type specific modulator for G protein-mediated cell signaling.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21#function" }, { "database": "UniProtKB", "id": "ARBA00057901", "url": "https://www.uniprot.org/uniprotkb/ARBA00057901#function" }, { "database": "UniProtKB", "id": "A0A4X1VP13", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP13#function" }, { "database": "UniProtKB", "id": "A0A5G2R2X2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21", "locus": { "chromosome": "2", "start_pos": 71519421, "end_pos": 71471417, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037188", "url": "https://www.ensembl.org/id/ENSSSCG00000037188" } ] } } ], "crossref": [ { "id": "A0A4X1VR21", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VR21", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037188", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037188", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525506", "url": "https://www.ncbi.nlm.nih.gov/gene/100525506", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525506", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525506", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LMDMVAH", "url": "https://omabrowser.org/oma/group/LMDMVAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VP13", "url": "https://www.orthodb.org/?gene=A0A4X1VP13", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VR21", "url": "https://www.orthodb.org/?gene=A0A4X1VR21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R2X2", "url": "https://www.orthodb.org/?gene=A0A5G2R2X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47503", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47503", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47503:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47503:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005654795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654795", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VP13", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VP13-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VR21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VR21-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2X2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSPDQEGFFNLLSHVQSGRMEEQRCSLQAGPGPASENQSSPAPEMDSLMDMLASTQGRRMDDQRVMVSALPGFQPVGPKDGGQKRAGTLSPQPLLTPQDPSALSFRRNSSPQPQTQAP", "length": 120, "header": "tr|A0A4X1VR21-1|A0A4X1VR21_PIG Isoform 1 of Purkinje cell protein 2 OS=Sus scrofa OX=9823 GN=PCP2 PE=1 SV=1 CANONICAL=A0A4X1VR21-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VP13-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP13/entry", "sequence": { "sequence": "MTHFLSCTPSPRGLHVHLSALLKSLELLNRRDFCFSKAQTAKLCMRHFWAGAEASREMDGTQEREAGTMMDQEEKEDGGSASCIEAGSPDQEGFFNLLSHVQSGRMEEQRCSLQAGPGPASENQSSPAPEMDSLMDMLASTQGRRMDDQRVMVSALPGFQPVGPKDGGQKRAGTLSPQPLLTPQDPSALSFRRNSSPQPQTQAP", "length": 204, "header": "tr|A0A4X1VP13-1|A0A4X1VR21_PIG Computationally mapped isoform of Purkinje cell protein 2 OS=Sus scrofa OX=9823 GN=PCP2 PE=1 SV=1 CANONICAL=A0A4X1VR21-1" }, "locus": { "chromosome": "2", "start_pos": 71519325, "end_pos": 71503223, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062624.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062624.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049506.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049506.2" } ] } }, { "isoform_ac": "A0A4X1VR21-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21/entry", "sequence": { "sequence": "MAGSPDQEGFFNLLSHVQSGRMEEQRCSLQAGPGPASENQSSPAPEMDSLMDMLASTQGRRMDDQRVMVSALPGFQPVGPKDGGQKRAGTLSPQPLLTPQDPSALSFRRNSSPQPQTQAP", "length": 120, "header": "tr|A0A4X1VR21-1|A0A4X1VR21_PIG Isoform 1 of Purkinje cell protein 2 OS=Sus scrofa OX=9823 GN=PCP2 PE=1 SV=1 CANONICAL=A0A4X1VR21-1" }, "locus": { "chromosome": "2", "start_pos": 71519325, "end_pos": 71517951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052479.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052479.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051572.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051572.3" } ] } }, { "isoform_ac": "A0A5G2R2X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X2/entry", "sequence": { "sequence": "MSVGGWGNRQDTRGKEKGCREPFQTRALGQLRFVLHEACLLEWACVGKKTGRAAREGVGSPLPSCSPERAGAEASREMDGTQEREAGTMMDQEEKEDGGSASCIEAGSPDQEGFFNLLSHVQSGRMEEQRCSLQAGPGPASENQSSPAPEMDSLMDMLASTQGRRMDDQRVMVSALPGFQPVGPKDGGQKRAGTLSPQPLLTPQDPSALSFRRNSSPQPQTQAP", "length": 224, "header": "tr|A0A5G2R2X2-1|A0A5G2R2X2_PIG Computationally mapped isoform of Purkinje cell protein 2 OS=Sus scrofa OX=9823 GN=PCP2 PE=1 SV=1 CANONICAL=A0A4X1VR21-1" }, "locus": { "chromosome": "2", "start_pos": 71519325, "end_pos": 71471616, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078445.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078445.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071439.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071439.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP13", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525506", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525506", "resource": "KEGG Pathway" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZXP8-1", "protein_name": "Purkinje cell protein 2", "gene_name": "Pcp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGSPDQEGFFNLLSHVQGDRMEEQRCSLQAEPGQTPESQGGPAPEMDNLMDMLANTQGRRMDDQRVTVNSLPGFQPIGPKDGMQKRPGTLSPQPLLSPQDPAALSFRRNSSPQPQTQAP", "length": 120 }, "evidence": [ { "id": "A0A4X1VR21", "url": "https://omabrowser.org/oma/group/A0A4X1VR21/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P12660-1", "protein_name": "Purkinje cell protein 2", "gene_name": "Pcp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGSPDQEGFFNLLTHVQGDRMEEQRCSLQAGPGQNPESQGGPAPEMDNLMDMLVNTQGRRMDDQRVTVNSLPGFQPIGPKDGMQKRPGTLSPQPLLTPQDPAALSFRRNSSPQPQTQAP", "length": 120 }, "evidence": [ { "id": "A0A4X1VR21", "url": "https://omabrowser.org/oma/group/A0A4X1VR21/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IVA1-1", "protein_name": "Purkinje cell protein 2 homolog", "gene_name": "PCP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMDQEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQAP", "length": 136 }, "evidence": [ { "id": "A0A4X1VR21", "url": "https://omabrowser.org/oma/group/A0A4X1VR21/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR21" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 39, "end_pos": 41 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VP56-1", "uniprot_ac": "A0A4X1VP56", "uniprot_id": "A0A4X1VP56_PIG", "mass": { "chemical_mass": 72385.0, "monoisotopic_mass": 72385.0 }, "refseq": { "ac": "XP_003481472", "name": "immunoglobulin superfamily member 8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481472" }, "gene_names": [ { "name": "IGSF8", "type": "recommended", "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ] }, { "name": "IGSF8", "type": "synonym", "evidence": [ { "id": "XP_003481472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481472" } ] } ], "protein_names": [ { "name": "Immunoglobulin superfamily member 8", "type": "recommended", "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56/entry#names_and_taxonomy" } ] }, { "name": "CD81 partner 3", "type": "synonym", "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56/entry#names_and_taxonomy" } ] }, { "name": "Glu-Trp-Ile EWI motif-containing protein 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56/entry#names_and_taxonomy" } ] }, { "name": "Prostaglandin regulatory-like protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56/entry#names_and_taxonomy" } ] }, { "name": "immunoglobulin superfamily member 8", "type": "synonym", "evidence": [ { "id": "XP_003481472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481472" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IGSF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56", "locus": { "chromosome": "4", "start_pos": 90401369, "end_pos": 90393624, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006392", "url": "https://www.ensembl.org/id/ENSSSCG00000006392" } ] } } ], "crossref": [ { "id": "A0A4X1VP56", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VP56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006392", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006392", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154024", "url": "https://www.ncbi.nlm.nih.gov/gene/100154024", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154024", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154024", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIPCNVS", "url": "https://omabrowser.org/oma/group/FIPCNVS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VP56", "url": "https://www.orthodb.org/?gene=A0A4X1VP56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ASW9", "url": "https://www.uniprot.org/uniprotkb/A0A287ASW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VP56-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVFPVAEAGGTAVGGGRAGGGGKKEGPRLLPLRSAQLRAPTPRCSAWCPSPGHAPPEPPATQNPSRPPEPPQSSLRRMGALGPKPPPPPLLLLMLGVGCCAREVLVPEGPLYRVAGTAISIPCNVSGYDGPAQQDFEWFLYRPEAPEAALGIVSTRDAGFSYAVFGPRVAAGEVHVQRLQGDAVLLKIARLQAQDAGIYECYTPSTDARYLGSYSGKVELRVLPDLLQVSATPPGPRGRQAPVSPPRLTVHEGQELALGCLARTSTQKHTHLAVSFGRVVPEVPVGRATLQEVVGLRPDLAVEAGAPYAERLAAGELRLGKEGTERYRMVVGGAQAEDAGTYHCTATEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPPGQHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPGDAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSSGHAQLVGGVGKDGVAELGVRPGGGPVSVELLGPRSHRLRLHSLEPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHALDTLFVPLLVGAGVALVIGATILGTITCCFMKRLRKR", "length": 687, "header": "tr|A0A4X1VP56-1|A0A4X1VP56_PIG Isoform 1 of Immunoglobulin superfamily member 8 OS=Sus scrofa OX=9823 GN=IGSF8 PE=1 SV=1 CANONICAL=A0A4X1VP56-1" }, "isoforms": [ { "isoform_ac": "A0A287ASW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASW9/entry", "sequence": { "sequence": "MVFPVAEAGGTAVGGGRAGGGGKKEGPRLLPLRSAQLRAPTPRCSAWCPSPGHAPPEPPATQNPSRPPEPPQSSLRRMGALGPKPPPPPLLLLMLGVGCCAREVLVPEGPLYRVAGTAISIPCNVSGYDGPAQQDFEWFLYRPEAPEAALGIVSTRDAGFSYAVFGPRVAAGEVHVQRLQGDAVLLKIARLQAQDAGIYECYTPSTDARYLGSYSGKVELRVLPDLLQVSATPPGPRGRQAPVSPPRLTVHEGQELALGCLARTSTQKHTHLAVSFGRVVPEVPVGRATLQEVVGLRPDLAVEAGAPYAERLAAGELRLGKEGTERYRMVVGGAQAEDAGTYHCTATEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPPGQHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPGDAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASCAWVQHADYSWYQAGSARSGPVTVYPYTHALDTLFVPLLVGAGVALVIGATILGTITCCFMKRLRKR", "length": 619, "header": "tr|A0A287ASW9-1|A0A287ASW9_PIG Computationally mapped isoform of Immunoglobulin superfamily member 8 OS=Sus scrofa OX=9823 GN=IGSF8 PE=1 SV=1 CANONICAL=A0A4X1VP56-1" }, "locus": { "chromosome": "4", "start_pos": 90400917, "end_pos": 90393638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051482.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051482.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047180.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047180.2" } ] } }, { "isoform_ac": "A0A4X1VP56-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56/entry", "sequence": { "sequence": "MVFPVAEAGGTAVGGGRAGGGGKKEGPRLLPLRSAQLRAPTPRCSAWCPSPGHAPPEPPATQNPSRPPEPPQSSLRRMGALGPKPPPPPLLLLMLGVGCCAREVLVPEGPLYRVAGTAISIPCNVSGYDGPAQQDFEWFLYRPEAPEAALGIVSTRDAGFSYAVFGPRVAAGEVHVQRLQGDAVLLKIARLQAQDAGIYECYTPSTDARYLGSYSGKVELRVLPDLLQVSATPPGPRGRQAPVSPPRLTVHEGQELALGCLARTSTQKHTHLAVSFGRVVPEVPVGRATLQEVVGLRPDLAVEAGAPYAERLAAGELRLGKEGTERYRMVVGGAQAEDAGTYHCTATEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPPGQHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPGDAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSSGHAQLVGGVGKDGVAELGVRPGGGPVSVELLGPRSHRLRLHSLEPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHALDTLFVPLLVGAGVALVIGATILGTITCCFMKRLRKR", "length": 687, "header": "tr|A0A4X1VP56-1|A0A4X1VP56_PIG Isoform 1 of Immunoglobulin superfamily member 8 OS=Sus scrofa OX=9823 GN=IGSF8 PE=1 SV=1 CANONICAL=A0A4X1VP56-1" }, "locus": { "chromosome": "4", "start_pos": 90400917, "end_pos": 90393638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007005.6", "url": "https://www.ensembl.org/id/ENSSSCT00000007005.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006815.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006815.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 382, "start_aa": "Thr", "end_pos": 382, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr382", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154024", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154024", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ANQ3-1", "protein_name": "Immunoglobulin superfamily member 8", "gene_name": "Igsf8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQKQNTPIVTVCNKRLCRISVNSRRNYLSVYSLCSSSYRPQESPQNHLRRMGVPSPTPLSSLLLLLLILGARCYARQVHVPKGPLYRVAGTAVSISCNVSDYEGPSQQDFEWFMYRPEAPATSLGIISTKDSQFSYAVFGPRVASGDLQVQRLKGDSVVLKIARLQAQDSGFYECYTPSTDTQYLGNYSAKVELRVLPDELQVSAAPPGPRGRQVATSPSRLTVHEGQELALGCLAQTKTKKHTHLSVSFGRAIPEAPVGRATLQEVVGLRSDMAVEAGAPYAERLVAGELRLSKEGTDRYRMVVGGAQAGDSGTYHCTAAEWIQDPDGSWVQVAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPAGRHAAYSVGWEMAPAGAPGPGRLVAQLDTEGIGSLGPGYEDRHIAMEKVASRTYRLRLEAARPADAGTYRCLAKAYVRGSGTRLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSSGPAQLVGGVGQDGVAELGVRPGGSPVSVELVGPRSHRLRLHSLGPEDEGIYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHALDTLFVPLLVGTGVALVTGASILATITCCFMKRLRKR", "length": 661 }, "evidence": [ { "id": "A0A4X1VP56", "url": "https://omabrowser.org/oma/group/A0A4X1VP56/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MTR4-1", "protein_name": "Immunoglobulin superfamily member 8", "gene_name": "IGSF8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGALGPKLPPPPLLLLMLGIGCCAREVLVPQGPLYRVAGTAISISCNVSGYEGSAQQDFEWFLYRPEAPEAALGIVSTRDPRFSYAIFGPRVAAGEVQVQRLQGDAAVLRISRLQAQDAGIYECYTPSTDARYLGSYSGKVELRVLPDTLQVSASPPGPRGRQAPTSPPRLTVHEGQELALGCLARTSTQKHTHLAVSFGRAVPEAPVGRATLQEVVGLRPDLAVDAGAPYAARLAAGELRLGKEGPERYRMVLGGAQADDAGTYHCTATEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRVGPGEPLELLCNVSGALPPPGRHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPADAGTYRCLAKAYVRGSGARLREAASARSRPLPVHVREEGVVLEAVAWLAGGAVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSSAPAQLVGGVGQDGVAELGVRPGGGPVSVELVGPRSHRLRLHGLGPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHALDTLFVPLLVGTGVALVIGATILGSITCCFMKRLRKR", "length": 610 }, "evidence": [ { "id": "A0A4X1VP56", "url": "https://omabrowser.org/oma/group/A0A4X1VP56/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R366-1", "protein_name": "Immunoglobulin superfamily member 8", "gene_name": "Igsf8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVPSPTPLSSLLLLLLILGTRCYARQVHVPRGPLYRVAGTAVSISCNVSDYEGPAQQDFEWFMYRPEAPATSLGIVSTKDSQFSYAVFGPRVASGDLQVQRLKGDSVVLKIARLQAQDSGFYECYTPSTDTQYLGNYSAKVELRVLPDELQVSAAPPGPRGRQAATSPSRLTVHEGQELALGCLAQTKTKKHTHLSVSFGRAIPEAPVGRATLQEVVGLRSDMAVEAGAPYAERLASGELRLSKEGTDRYRMVVGGAQAGDSGTYHCTAAEWIQDPDGSWVQVAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPPGRHAAYSVGWEMAPAGAPGPGRLVAQLDTEGIGSLGPGYEDRHIAMEKVASRTYRLRLEAARPADAGTYRCLAKAYVRGSGTRLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEEGELSSGPAQLVGGVGQDGVAELGVRPGGGPVSVELVGPRSHRLRLHGLGPEDEGIYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYTHAVDTLFVPLLVGTGVALVTGASVLATITCCFMKRMRKR", "length": 611 }, "evidence": [ { "id": "A0A4X1VP56", "url": "https://omabrowser.org/oma/group/A0A4X1VP56/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969P0-1", "protein_name": "Immunoglobulin superfamily member 8", "gene_name": "IGSF8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGALRPTLLPPSLPLLLLLMLGMGCWAREVLVPEGPLYRVAGTAVSISCNVTGYEGPAQQNFEWFLYRPEAPDTALGIVSTKDTQFSYAVFKSRVVAGEVQVQRLQGDAVVLKIARLQAQDAGIYECHTPSTDTRYLGSYSGKVELRVLPDVLQVSAAPPGPRGRQAPTSPPRMTVHEGQELALGCLARTSTQKHTHLAVSFGRSVPEAPVGRSTLQEVVGIRSDLAVEAGAPYAERLAAGELRLGKEGTDRYRMVVGGAQAGDAGTYHCTAAEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCNVSGALPPAGRHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSLGPGYEGRHIAMEKVASRTYRLRLEAARPGDAGTYRCLAKAYVRGSGTRLREAASARSRPLPVHVREEGVVLEAVAWLAGGTVYRGETASLLCNISVRGGPPGLRLAASWWVERPEDGELSSVPAQLVGGVGQDGVAELGVRPGGGPVSVELVGPRSHRLRLHSLGPEDEGVYHCAPSAWVQHADYSWYQAGSARSGPVTVYPYMHALDTLFVPLLVGTGVALVTGATVLGTITCCFMKRLRKR", "length": 613 }, "evidence": [ { "id": "A0A4X1VP56", "url": "https://omabrowser.org/oma/group/A0A4X1VP56/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "pmid": "" }, { "name": "regulation of cell motility", "id": "GO:2000145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000145", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VP56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VP56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VP56" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 201, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 382 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 401, "end_pos": 403 }, { "start_pos": 537, "end_pos": 539 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VPC4-1", "uniprot_ac": "A0A4X1VPC4", "uniprot_id": "A0A4X1VPC4_PIG", "mass": { "chemical_mass": 19748.0, "monoisotopic_mass": 19748.0 }, "refseq": {}, "gene_names": [ { "name": "TMCO2", "type": "recommended", "evidence": [ { "id": "A0A4X1VPC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4" } ] } ], "protein_names": [ { "name": "Transmembrane and coiled-coil domains 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VPC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMCO2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4", "locus": { "chromosome": "6", "start_pos": 96003978, "end_pos": 96000665, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036395", "url": "https://www.ensembl.org/id/ENSSSCG00000036395" } ] } } ], "crossref": [ { "id": "A0A4X1VPC4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VPC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR031697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR38496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38496:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38496:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15844", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15844", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VPC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VPC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSPSSAWDVIIDYLSLSSIWKYLQATLMGETSVPQQTNLGRLDNLAPAVQVLLGISFLILLGIGVYALWKRSVQSIQKILLFIITLYKLYKKGSDFFQALLVSPEGSALPVQDNIFLSLGLQEKILKKLQMVENKVKDLEGMIISQKPTTKRDCSSEPYCSCSDCQSPLPTSGFTHI", "length": 178, "header": "tr|A0A4X1VPC4-1|A0A4X1VPC4_PIG Isoform 1 of Transmembrane and coiled-coil domains 2 OS=Sus scrofa OX=9823 GN=TMCO2 PE=4 SV=1 CANONICAL=A0A4X1VPC4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VPC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4/entry", "sequence": { "sequence": "MSSPSSAWDVIIDYLSLSSIWKYLQATLMGETSVPQQTNLGRLDNLAPAVQVLLGISFLILLGIGVYALWKRSVQSIQKILLFIITLYKLYKKGSDFFQALLVSPEGSALPVQDNIFLSLGLQEKILKKLQMVENKVKDLEGMIISQKPTTKRDCSSEPYCSCSDCQSPLPTSGFTHI", "length": 178, "header": "tr|A0A4X1VPC4-1|A0A4X1VPC4_PIG Isoform 1 of Transmembrane and coiled-coil domains 2 OS=Sus scrofa OX=9823 GN=TMCO2 PE=4 SV=1 CANONICAL=A0A4X1VPC4-1" }, "locus": { "chromosome": "6", "start_pos": 96003975, "end_pos": 96000864, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063568.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063568.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040427.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040427.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VPI3-1", "uniprot_ac": "A0A4X1VPI3", "uniprot_id": "A0A4X1VPI3_PIG", "mass": { "chemical_mass": 6790.0, "monoisotopic_mass": 6790.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Cell cycle regulator of NHEJ", "type": "synonym", "evidence": [ { "id": "A0A4X1VPI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3", "locus": {} } ], "crossref": [ { "id": "A0A4X1VPI3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VPI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VPI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALKSENKKRVLPTWMTAQGAEKKTTKRRRADLVPTAAARGSSGQGPPGESTSCHEDGVLHE", "length": 63, "header": "tr|A0A4X1VPI3-1|A0A4X1VPI3_PIG Isoform 1 of Cell cycle regulator of NHEJ OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VPI3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3/entry", "sequence": { "sequence": "MEALKSENKKRVLPTWMTAQGAEKKTTKRRRADLVPTAAARGSSGQGPPGESTSCHEDGVLHE", "length": 63, "header": "tr|A0A4X1VPI3-1|A0A4X1VPI3_PIG Isoform 1 of Cell cycle regulator of NHEJ OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VPI3-1" }, "locus": { "chromosome": "18", "start_pos": 14131637, "end_pos": 14130552, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071610.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071610.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066181.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066181.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VPW4-1", "uniprot_ac": "A0A4X1VPW4", "uniprot_id": "A0A4X1VPW4_PIG", "mass": { "chemical_mass": 15786.0, "monoisotopic_mass": 15786.0 }, "refseq": { "ac": "XP_003124656", "name": "calcium-regulated heat-stable protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124656" }, "gene_names": [ { "name": "CARHSP1", "type": "recommended", "evidence": [ { "id": "A0A4X1VPW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ] }, { "name": "CARHSP1", "type": "synonym", "evidence": [ { "id": "XP_003124656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124656" } ] } ], "protein_names": [ { "name": "Calcium regulated heat stable protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VPW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4/entry#names_and_taxonomy" } ] }, { "name": "calcium-regulated heat-stable protein 1", "type": "synonym", "evidence": [ { "id": "XP_003124656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124656" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CARHSP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4", "locus": { "chromosome": "3", "start_pos": 33847938, "end_pos": 33838488, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026710", "url": "https://www.ensembl.org/id/ENSSSCG00000026710" } ] } } ], "crossref": [ { "id": "A0A4X1VPW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VPW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521547", "url": "https://www.ncbi.nlm.nih.gov/gene/100521547", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521547", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521547", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YRGVCKC", "url": "https://omabrowser.org/oma/group/YRGVCKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VPW4", "url": "https://www.orthodb.org/?gene=A0A4X1VPW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124656", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124656", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VPW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSEPPPPSQPPTHQSSVGLDTQRARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVVSS", "length": 146, "header": "tr|A0A4X1VPW4-1|A0A4X1VPW4_PIG Isoform 1 of Calcium regulated heat stable protein 1 OS=Sus scrofa OX=9823 GN=CARHSP1 PE=1 SV=1 CANONICAL=A0A4X1VPW4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VPW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4/entry", "sequence": { "sequence": "MSSEPPPPSQPPTHQSSVGLDTQRARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPIYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVVSS", "length": 146, "header": "tr|A0A4X1VPW4-1|A0A4X1VPW4_PIG Isoform 1 of Calcium regulated heat stable protein 1 OS=Sus scrofa OX=9823 GN=CARHSP1 PE=1 SV=1 CANONICAL=A0A4X1VPW4-1" }, "locus": { "chromosome": "3", "start_pos": 33845532, "end_pos": 33842270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054792.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054792.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057150.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521547", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521547", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z0A0-1", "protein_name": "Calcium regulated heat stable protein 1", "gene_name": "CARHSP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSEPAASASEQSPSSLHSPSSLHLPENRRTRDRSPSPMRGYLIPSPLPTRRTRTYSATVRASEGPIYKGVCKCFCRSKGHGFISPADGGPDIFVHISDSVSSVHCCGQKVPAVIAFPVFPDKTHSHIAVTAAGWESSSIAQHLY", "length": 145 }, "evidence": [ { "id": "A0A4X1VPW4", "url": "https://omabrowser.org/oma/group/A0A4X1VPW4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GVM9-1", "protein_name": "Calcium-regulated heat-stable protein 1", "gene_name": "Carhsp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSEPPPPPPQPPTHQSSVGLLDTPRARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVISS", "length": 148 }, "evidence": [ { "id": "A0A4X1VPW4", "url": "https://omabrowser.org/oma/group/A0A4X1VPW4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9CR86-1", "protein_name": "Calcium-regulated heat stable protein 1", "gene_name": "Carhsp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSEPPPPPLQPPTHQTSVGLLDTPRTRDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVISN", "length": 148 }, "evidence": [ { "id": "A0A4X1VPW4", "url": "https://omabrowser.org/oma/group/A0A4X1VPW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WU49-1", "protein_name": "Calcium-regulated heat stable protein 1", "gene_name": "Carhsp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSEPPPPPQPPTHQTSIGLLDTPRARDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVISS", "length": 147 }, "evidence": [ { "id": "A0A4X1VPW4", "url": "https://omabrowser.org/oma/group/A0A4X1VPW4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9Y2V2-1", "protein_name": "Calcium-regulated heat-stable protein 1", "gene_name": "CARHSP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETWSGHVISS", "length": 147 }, "evidence": [ { "id": "A0A4X1VPW4", "url": "https://omabrowser.org/oma/group/A0A4X1VPW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" }, { "name": "cytoplasmic exosome (RNase complex)", "id": "GO:0000177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000177", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" }, { "name": "P granule", "id": "GO:0043186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043186", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of mRNA stability", "id": "GO:0043488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043488", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VPW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VPW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPW4" }, { "id": "PS51857", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CSD", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 127, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VQC4-1", "uniprot_ac": "A0A4X1VQC4", "uniprot_id": "A0A4X1VQC4_PIG", "mass": { "chemical_mass": 45668.0, "monoisotopic_mass": 45668.0 }, "refseq": { "ac": "XP_020931809", "name": "putative aspartate aminotransferase, cytoplasmic 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931809" }, "gene_names": [ { "name": "GOT1L1", "type": "recommended", "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ] }, { "name": "GOT1L1", "type": "synonym", "evidence": [ { "id": "XP_020931809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931809" } ] } ], "protein_names": [ { "name": "Putative aspartate aminotransferase, cytoplasmic 2", "type": "recommended", "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4/entry#names_and_taxonomy" } ] }, { "name": "2.6.1.1", "type": "synonym", "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4/entry#names_and_taxonomy" } ] }, { "name": "Glutamate oxaloacetate transaminase 1-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4/entry#names_and_taxonomy" } ] }, { "name": "Transaminase A-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4/entry#names_and_taxonomy" } ] }, { "name": "putative aspartate aminotransferase, cytoplasmic 2", "type": "synonym", "evidence": [ { "id": "XP_020931809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931809" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GOT1L1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4", "locus": { "chromosome": "15", "start_pos": 48507010, "end_pos": 48499964, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038325", "url": "https://www.ensembl.org/id/ENSSSCG00000038325" } ] } } ], "crossref": [ { "id": "A0A4X1VQC4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VQC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00609", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00609", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110257165", "url": "https://www.ncbi.nlm.nih.gov/gene/110257165", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257165", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257165", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSMIKSK", "url": "https://omabrowser.org/oma/group/MSMIKSK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VQC4", "url": "https://www.orthodb.org/?gene=A0A4X1VQC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11879", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11879", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11879:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11879:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00155", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931809", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931809", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "21824", "url": "https://www.rhea-db.org/rhea/21824", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSLSVFVDVPLAQKLEGSLLKTYKQDNYPNKMFLAYKVCMTSEGQPWVSSVVSKIRLQIAQDPSLDYEYTPVMGMESFIQASLKLLFGKHSQVIVENRAGGVHTVGDSGAFQLGAQFLKTWHRDSQIVYIISSQKEPHGLIFQDMGFTVSEYIFWDAEQLCLDPSVLLNVVEQAPHGCVFVIGNISNCKLTQSQWTKLTALMKSKQIFPFFDISYQGLSTSDLEEDTRFLDYFVSQDLEFFCSQSLSKNFGIYDEGVGILVVVALNNQLLLRVLSQLMNFARALWLNPPTTGARIITSILCNPALQEEWKQSLEGIIENIMLIKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNSKQVEYLVKKKHVYIPKNGRINFTCINPCNIDYITQSINEAVCFTKP", "length": 404, "header": "tr|A0A4X1VQC4-1|A0A4X1VQC4_PIG Isoform 1 of Putative aspartate aminotransferase, cytoplasmic 2 OS=Sus scrofa OX=9823 GN=GOT1L1 PE=3 SV=1 CANONICAL=A0A4X1VQC4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VQC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4/entry", "sequence": { "sequence": "MPSLSVFVDVPLAQKLEGSLLKTYKQDNYPNKMFLAYKVCMTSEGQPWVSSVVSKIRLQIAQDPSLDYEYTPVMGMESFIQASLKLLFGKHSQVIVENRAGGVHTVGDSGAFQLGAQFLKTWHRDSQIVYIISSQKEPHGLIFQDMGFTVSEYIFWDAEQLCLDPSVLLNVVEQAPHGCVFVIGNISNCKLTQSQWTKLTALMKSKQIFPFFDISYQGLSTSDLEEDTRFLDYFVSQDLEFFCSQSLSKNFGIYDEGVGILVVVALNNQLLLRVLSQLMNFARALWLNPPTTGARIITSILCNPALQEEWKQSLEGIIENIMLIKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNSKQVEYLVKKKHVYIPKNGRINFTCINPCNIDYITQSINEAVCFTKP", "length": 404, "header": "tr|A0A4X1VQC4-1|A0A4X1VQC4_PIG Isoform 1 of Putative aspartate aminotransferase, cytoplasmic 2 OS=Sus scrofa OX=9823 GN=GOT1L1 PE=3 SV=1 CANONICAL=A0A4X1VQC4-1" }, "locus": { "chromosome": "15", "start_pos": 48506952, "end_pos": 48500156, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043282.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043282.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043472.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257165", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257165", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F4Y9-1", "protein_name": "Putative aspartate aminotransferase, cytoplasmic 2", "gene_name": "Got1l1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTSLSVFRDIVPAQKLEGSLLKIYKQDDYPNKMFLAYRVCMTDEGHPWVSLVVRKTRLQISQDPSLNYEYLPQMGMKSFVQAALELLFGKHSQAIAEKRVGGVHTVGDSGAFQLGAQFLRTWRKNLKTVCIVSCQKEQYGLIFQEMGFTVYEYLIWNPKELCSDPKMFFEVMEHIPADSILVIGNIIDCRFSQNQWAKLMSIIKKKQIFPFFDIPCQGLSTGNLEEDTRLLQYFVSLGLEFFCNQSLSKNFGIYDEGVGILAVAALSNQNLLCVLSQLMNYVEALWGSPPATGARIITSILCNPALFGEWKQSLKGVVENIMLIKEKVKEKLRLLGTPGTWNHITEQSGFHGYLGLNYQQVEYLTKKKHIYIPKTSRINFTCINIRNIDYITQSIHEAVKLTEECP", "length": 406 }, "evidence": [ { "id": "A0A4X1VQC4", "url": "https://omabrowser.org/oma/group/A0A4X1VQC4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LWJ8-1", "protein_name": "Putative aspartate aminotransferase, cytoplasmic 2", "gene_name": "Got1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSLSVFRDVPIAQKLEGSLLKIYRQDDSSVKMFLAYKVCMTEGGHPWVSLVVRKTRLQIAEDPSLNYEYLPLAGLKSFIQASLELLFGKHSQAIVEKRVGGVHIVGESGAFQLGAQFLKIWRKNLKTVCIISCQNEQCGLIFRDMGFTVYEYSVWNSTDLCSDPSIFVEVLQHIPAGSILVIGNISDCRFTQNQWTKLMSIIKSKQIFPFFDIPCQGLSTGDLEEDSKFLQHFVSLGFEFFCSQSLSKNFGIYDEGVGILVVAALSNQHLLCVISQLMDYVQALWGNPPATGARIITSILCNPALFGEWKQSLKGVVENIMLIKEKVKEKLRLLGTPGSWNHITRQSGTHGYLGLNCILRGLFPK", "length": 366 }, "evidence": [ { "id": "A0A4X1VQC4", "url": "https://omabrowser.org/oma/group/A0A4X1VQC4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2T9S8-1", "protein_name": "Putative aspartate aminotransferase, cytoplasmic 2", "gene_name": "GOT1L1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPTLSVFTDVPMAQKLEGSLLKTYKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQDPSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQIVYIVSSQKEPHGLIFQDMGFTVYEHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGNCQLTPSQWTQLMTLMKSKEIFPFFDIPYQGLSTGDLEEDARFLHYFVSQGFEFFCSQSLSKNFGIYDEGVGTLVVVTLDNQLLLRVLSQLMNFARALWLNPPTTGARIITSVLCNPAMQGEWRQSLEGVVENVMMTKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNSQQVEYLISEKHIYIPKNGRINFTCINSYNIDYITSSINEAVCFTKDSER", "length": 407 }, "evidence": [ { "id": "A0A4X1VQC4", "url": "https://omabrowser.org/oma/group/A0A4X1VQC4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7TSV6-1", "protein_name": "Aspartate aminotransferase, cytoplasmic 2", "gene_name": "Got1l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLSVFRDVPTAQKLEGSLLKIYRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCGLIFQDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVIGNITDCKFTQNQWTKLMSIIKSKQIFPFFDIPCQGLSTGDLEEDTKILQYFVSLGLEFFCSQSLSKNFGIYDEGVGILVVAALSNQHLLCVLSQLMDYVQALWGNPPATGARIITSILCNPALFGEWKQSLKGVVENMMLIKEKVKEKLRLLGTPGSWDHITRQSGTHGYLGLTYQQVEFLVKKKHIYLPKTSRINFTCINARNIDYITQSIHEAVMLTEG", "length": 404 }, "evidence": [ { "id": "A0A4X1VQC4", "url": "https://omabrowser.org/oma/group/A0A4X1VQC4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NHS2-1", "protein_name": "Aspartate aminotransferase, cytoplasmic 2", "gene_name": "GOT1L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPTLSVFMDVPLAHKLEGSLLKTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARIVYIISSQKELHGLVFQDMGFTVYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMGNIIDCKLTPSGWAKLMSMIKSKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVVAVNNQQLLCVLSQLEGLAQALWLNPPNTGARVITSILCNPALLGEWKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGTHGYLGLNSQQVEYLVRKKHIYIPKNGQINFSCINANNINYITEGINEAVLLTESSEMCLPKEKKTLIGIKL", "length": 421 }, "evidence": [ { "id": "A0A4X1VQC4", "url": "https://omabrowser.org/oma/group/A0A4X1VQC4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "pmid": "" }, { "name": "L-aspartate:2-oxoglutarate aminotransferase activity", "id": "GO:0004069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004069", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "aspartate biosynthetic process", "id": "GO:0006532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006532", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21824", "name": "", "equation": "L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21824", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21824" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VQC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQC4" }, { "id": "PF00155", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminotransferase class I/classII large", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 395, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 379, "end_pos": 381 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VQL6-1", "uniprot_ac": "A0A4X1VQL6", "uniprot_id": "A0A4X1VQL6_PIG", "mass": { "chemical_mass": 11937.0, "monoisotopic_mass": 11937.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Glutaredoxin-1", "type": "recommended", "evidence": [ { "id": "A0A4X1VQL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6#function" }, { "database": "UniProtKB", "id": "ARBA00002549", "url": "https://www.uniprot.org/uniprotkb/ARBA00002549#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6", "locus": {} } ], "crossref": [ { "id": "A0A4X1VQL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VQL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03419", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03419", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QFTGART", "url": "https://omabrowser.org/oma/group/QFTGART/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46185", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46185", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46185:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46185:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VQL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQAFVNSRIQPGKVAVFIKPTCPYCRRTQKLLSQLPFKEGLLEFVDITATSDTNKIQVYLHHLMGARTAPRVFMDEECIGGCTDFVSMHERGELLTHLKQIGALK", "length": 106, "header": "tr|A0A4X1VQL6-1|A0A4X1VQL6_PIG Isoform 1 of Glutaredoxin-1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VQL6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VQL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6/entry", "sequence": { "sequence": "MAQAFVNSRIQPGKVAVFIKPTCPYCRRTQKLLSQLPFKEGLLEFVDITATSDTNKIQVYLHHLMGARTAPRVFMDEECIGGCTDFVSMHERGELLTHLKQIGALK", "length": 106, "header": "tr|A0A4X1VQL6-1|A0A4X1VQL6_PIG Isoform 1 of Glutaredoxin-1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VQL6-1" }, "locus": { "chromosome": "2", "start_pos": 12477381, "end_pos": 12477064, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014371.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014371.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013983.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013983.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glutathione disulfide oxidoreductase activity", "id": "GO:0015038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015038", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VQL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQL6" }, { "id": "PF00462", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00462" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glutaredoxin", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 80, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VQM5-1", "uniprot_ac": "A0A4X1VQM5", "uniprot_id": "A0A4X1VQM5_PIG", "mass": { "chemical_mass": 24506.0, "monoisotopic_mass": 24506.0 }, "refseq": { "ac": "XP_020942789", "name": "zinc finger C2HC domain-containing protein 1B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942789" }, "gene_names": [ { "name": "ZC2HC1B", "type": "recommended", "evidence": [ { "id": "A0A4X1VQM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5" } ] }, { "name": "ZC2HC1B", "type": "synonym", "evidence": [ { "id": "XP_020942789", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942789" } ] } ], "protein_names": [ { "name": "Zinc finger C2HC-type containing 1B", "type": "synonym", "evidence": [ { "id": "A0A4X1VQM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger C2HC domain-containing protein 1B", "type": "synonym", "evidence": [ { "id": "XP_020942789", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942789" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZC2HC1B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5", "locus": { "chromosome": "1", "start_pos": 21373597, "end_pos": 21413940, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004128", "url": "https://www.ensembl.org/id/ENSSSCG00000004128" } ] } } ], "crossref": [ { "id": "A0A4X1VQM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VQM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100524002", "url": "https://www.ncbi.nlm.nih.gov/gene/100524002", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026319", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026319", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524002", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524002", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VQM5", "url": "https://www.orthodb.org/?gene=A0A4X1VQM5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13555:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13555:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942789", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942789", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VQM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAEPFLADGNQALFPCEVCGRRFAADVLERHGPICRKVFNKKRKPFNSLKQRLQGTDIPLVGKVPQPKAQPVRKSNWRQQHEDFINAIRSAKQCTLAIKEGRPLPPPPPPSINPDYIQCPYCMRRFNETAASRHINFCKDQASRRVFDPAQTAAKLASRAQGRPQMMPKKEPTVTSAVGALLQNRALEASVVPTRPGLAVDPASGAKLRQGFTKSSKKD", "length": 221, "header": "tr|A0A4X1VQM5-1|A0A4X1VQM5_PIG Isoform 1 of Zinc finger C2HC-type containing 1B OS=Sus scrofa OX=9823 GN=ZC2HC1B PE=1 SV=1 CANONICAL=A0A4X1VQM5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VQM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5/entry", "sequence": { "sequence": "MAEAEPFLADGNQALFPCEVCGRRFAADVLERHGPICRKVFNKKRKPFNSLKQRLQGTDIPLVGKVPQPKAQPVRKSNWRQQHEDFINAIRSAKQCTLAIKEGRPLPPPPPPSINPDYIQCPYCMRRFNETAASRHINFCKDQASRRVFDPAQTAAKLASRAQGRPQMMPKKEPTVTSAVGALLQNRALEASVVPTRPGLAVDPASGAKLRQGFTKSSKKD", "length": 221, "header": "tr|A0A4X1VQM5-1|A0A4X1VQM5_PIG Isoform 1 of Zinc finger C2HC-type containing 1B OS=Sus scrofa OX=9823 GN=ZC2HC1B PE=1 SV=1 CANONICAL=A0A4X1VQM5-1" }, "locus": { "chromosome": "1", "start_pos": 21413741, "end_pos": 21373614, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004563.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004563.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004460.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004460.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524002", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524002", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VQM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQM5" }, { "id": "PS52027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2HC/C3H-type", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 43, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VQR6-1", "uniprot_ac": "A0A4X1VQR6", "uniprot_id": "A0A4X1VQR6_PIG", "mass": { "chemical_mass": 17225.0, "monoisotopic_mass": 17225.0 }, "refseq": { "ac": "XP_003122046", "name": "Golgi-associated plant pathogenesis-related protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122046" }, "gene_names": [ { "name": "GLIPR2", "type": "recommended", "evidence": [ { "id": "A0A4X1VQR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ] }, { "name": "GLIPR2", "type": "synonym", "evidence": [ { "id": "XP_003122046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122046" } ] } ], "protein_names": [ { "name": "Golgi-associated plant pathogenesis-related protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1VQR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6/entry#names_and_taxonomy" } ] }, { "name": "Glioma pathogenesis-related protein 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VQR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6/entry#names_and_taxonomy" } ] }, { "name": "Golgi-associated plant pathogenesis-related protein 1", "type": "synonym", "evidence": [ { "id": "XP_003122046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122046" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLIPR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6", "locus": { "chromosome": "1", "start_pos": 236943823, "end_pos": 236919879, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031236", "url": "https://www.ensembl.org/id/ENSSSCG00000031236" } ] } } ], "crossref": [ { "id": "A0A4X1VQR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VQR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05382", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05382", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515356", "url": "https://www.ncbi.nlm.nih.gov/gene/100515356", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515356", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515356", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NPGHYEQ", "url": "https://omabrowser.org/oma/group/NPGHYEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VQR6", "url": "https://www.orthodb.org/?gene=A0A4X1VQR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122046", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122046", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQS4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQS9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKSASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGYFEENVLPPKK", "length": 154, "header": "tr|A0A4X1VQR6-1|A0A4X1VQR6_PIG Isoform 1 of Golgi-associated plant pathogenesis-related protein 1 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=1 SV=1 CANONICAL=A0A4X1VQR6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VQR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6/entry", "sequence": { "sequence": "MGKSASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGYFEENVLPPKK", "length": 154, "header": "tr|A0A4X1VQR6-1|A0A4X1VQR6_PIG Isoform 1 of Golgi-associated plant pathogenesis-related protein 1 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=1 SV=1 CANONICAL=A0A4X1VQR6-1" }, "locus": { "chromosome": "1", "start_pos": 236942473, "end_pos": 236920006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062232.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062232.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048830.1" } ] } }, { "isoform_ac": "A0A4X1VQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS4/entry", "sequence": { "sequence": "MGKSASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGYFEENVLPPKK", "length": 128, "header": "tr|A0A4X1VQS4-1|A0A4X1VQS4_PIG Computationally mapped isoform of GLI pathosis related 2 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=1 SV=1 CANONICAL=A0A4X1VQR6-1" }, "locus": { "chromosome": "1", "start_pos": 236942473, "end_pos": 236920006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089653.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089653.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061934.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061934.1" } ] } }, { "isoform_ac": "A0A4X1VQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQS9/entry", "sequence": { "sequence": "MGKSASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQTLHGHGVEEYKEDGSGEGVCK", "length": 62, "header": "tr|A0A4X1VQS9-1|A0A4X1VQS9_PIG Computationally mapped isoform of GLI pathosis related 2 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=4 SV=1 CANONICAL=A0A4X1VQR6-1" }, "locus": { "chromosome": "1", "start_pos": 236942379, "end_pos": 236920006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071990.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071990.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063064.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063064.1" } ] } }, { "isoform_ac": "A0A5G2QA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA01/entry", "sequence": { "sequence": "MGASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGYFEENVLPPKK", "length": 152, "header": "tr|A0A5G2QA01-1|A0A5G2QA01_PIG Computationally mapped isoform of Golgi-associated plant pathogenesis-related protein 1 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=1 SV=1 CANONICAL=A0A4X1VQR6-1" }, "locus": { "chromosome": "1", "start_pos": 236942473, "end_pos": 236929289, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079734.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079734.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061175.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061175.1" } ] } }, { "isoform_ac": "A0A5G2QSD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD6/entry", "sequence": { "sequence": "MPSTLALSAPMPPHHLLQEAFPDTSVVPIVHATQLHTSSVVSHRGLPGTWELEASKQFNDEVLKAHNEYRQKHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNQGYFEENVLPPKK", "length": 203, "header": "tr|A0A5G2QSD6-1|A0A5G2QSD6_PIG Computationally mapped isoform of Golgi-associated plant pathogenesis-related protein 1 OS=Sus scrofa OX=9823 GN=GLIPR2 PE=1 SV=1 CANONICAL=A0A4X1VQR6-1" }, "locus": { "chromosome": "1", "start_pos": 236942473, "end_pos": 236926329, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089819.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089819.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515356", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515356", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZJ62-1", "protein_name": "Golgi-associated plant pathogenesis-related protein 1", "gene_name": "Glipr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKSASKQFNNEVLKAHNEYRAKHGVPPLKLCKKLNQEAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKSYNFQQPGFTSGTGHFTAMVWKNTKKIGVGKASASDGSSFVVARYFPAGNIVNQGFFEENVPPPKK", "length": 154 }, "evidence": [ { "id": "A0A4X1VQR6", "url": "https://omabrowser.org/oma/group/A0A4X1VQR6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XWV9-1", "protein_name": "Golgi-associated plant pathogenesis-related protein 1", "gene_name": "GLIPR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "ASKQFAEEVLKAHNDYRKKHGVPPLKLCKKLNRGAQQYAEELAASRILKHSSESASGKCGENLAWASYDQPGKDVADRWYSEIKNYSFQNPGFSSGTGHFTAMVWKSTKKMGVGKASASDGSTFVVARYDPAGNVVNPGYYEENVLPPRK", "length": 150 }, "evidence": [ { "id": "A0A4X1VQR6", "url": "https://omabrowser.org/oma/group/A0A4X1VQR6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9CYL5-1", "protein_name": "Golgi-associated plant pathogenesis-related protein 1", "gene_name": "Glipr2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKSASKQFNNEVLKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKDVADRWYSEIKSYNFQQPGFTSGTGHFTAMVWKNTKKIGVGKASASDGSSFVVARYFPAGNIVNQGFFEENVPPPKK", "length": 154 }, "evidence": [ { "id": "A0A4X1VQR6", "url": "https://omabrowser.org/oma/group/A0A4X1VQR6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H4G4-1", "protein_name": "Golgi-associated plant pathogenesis-related protein 1", "gene_name": "GLIPR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPPKK", "length": 154 }, "evidence": [ { "id": "A0A4X1VQR6", "url": "https://omabrowser.org/oma/group/A0A4X1VQR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" }, { "name": "positive regulation of epithelial to mesenchymal transition", "id": "GO:0010718", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010718", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" }, { "name": "positive regulation of epithelial cell migration", "id": "GO:0010634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VQR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQR6" }, { "id": "SM00198", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00198" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCP", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 141, "start_aa": "Gln", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VQU6-1", "uniprot_ac": "A0A4X1VQU6", "uniprot_id": "A0A4X1VQU6_PIG", "mass": { "chemical_mass": 21158.0, "monoisotopic_mass": 21158.0 }, "refseq": { "ac": "XP_005661355", "name": "calcyphosin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661355" }, "gene_names": [ { "name": "CAPS", "type": "recommended", "evidence": [ { "id": "A0A4X1VQU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" } ] }, { "name": "CAPS", "type": "synonym", "evidence": [ { "id": "XP_005661355", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661355" } ] } ], "protein_names": [ { "name": "Calcyphosin", "type": "recommended", "evidence": [ { "id": "A0A4X1VQU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6/entry#names_and_taxonomy" } ] }, { "name": "Calcyphosine", "type": "synonym", "evidence": [ { "id": "A0A4X1VQU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6/entry#names_and_taxonomy" } ] }, { "name": "calcyphosin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005661355", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661355" } ] } ], "function": [ { "annotation": "Calcium-binding protein. May play a role in cellular signaling events.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6#function" }, { "database": "UniProtKB", "id": "ARBA00059043", "url": "https://www.uniprot.org/uniprotkb/ARBA00059043#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAPS", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6", "locus": { "chromosome": "2", "start_pos": 73123191, "end_pos": 73124916, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013532", "url": "https://www.ensembl.org/id/ENSSSCG00000013532" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013532", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013532", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514564", "url": "https://www.ncbi.nlm.nih.gov/gene/100514564", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NSKHHPK", "url": "https://omabrowser.org/oma/group/NSKHHPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VQU6", "url": "https://www.orthodb.org/?gene=A0A4X1VQU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R7J3", "url": "https://www.orthodb.org/?gene=A0A5G2R7J3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SBU1", "url": "https://www.orthodb.org/?gene=F1SBU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13202", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13202", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005661355", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661355", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VQU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBU1", "url": "https://www.uniprot.org/uniprotkb/F1SBU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAVDTTMEKLRAQCLSRGASGIQGLARFFRRLDQDGSRSLGAEELQRGLAELGLELDMAEVRGVCRRWDRDGSGTLDLEEFLRALRPPLSRAREAVITAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEEEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASVDTDEEFVAMMTRAWRL", "length": 189, "header": "tr|A0A4X1VQU6-1|A0A4X1VQU6_PIG Isoform 1 of Calcyphosin OS=Sus scrofa OX=9823 GN=CAPS PE=1 SV=1 CANONICAL=A0A4X1VQU6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VQU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6/entry", "sequence": { "sequence": "MDAVDTTMEKLRAQCLSRGASGIQGLARFFRRLDQDGSRSLGAEELQRGLAELGLELDMAEVRGVCRRWDRDGSGTLDLEEFLRALRPPLSRAREAVITAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEEEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASVDTDEEFVAMMTRAWRL", "length": 189, "header": "tr|A0A4X1VQU6-1|A0A4X1VQU6_PIG Isoform 1 of Calcyphosin OS=Sus scrofa OX=9823 GN=CAPS PE=1 SV=1 CANONICAL=A0A4X1VQU6-1" }, "locus": { "chromosome": "2", "start_pos": 73124732, "end_pos": 73123888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040943.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040943.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043556.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043556.1" } ] } }, { "isoform_ac": "A0A5G2R7J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J3/entry", "sequence": { "sequence": "MDAVDTTMEKLRAQCLSRGASGIQGLARFFRRLDQDGSRSLGAEELQRGLAELGLELDMAEVRGVCRRWDRDGSGTLDLEEFLRALRVRSGEWTEEEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASVDTDEEFVAMMTRAWRL", "length": 147, "header": "tr|A0A5G2R7J3-1|A0A5G2R7J3_PIG Computationally mapped isoform of Calcyphosine OS=Sus scrofa OX=9823 GN=CAPS PE=1 SV=1 CANONICAL=A0A4X1VQU6-1" }, "locus": { "chromosome": "2", "start_pos": 73124732, "end_pos": 73123888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085749.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085749.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070102.1" } ] } }, { "isoform_ac": "F1SBU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU1/entry", "sequence": { "sequence": "MDAVDTTMEKLRAQCLSRGASGIQGLARFFRRLDQDGSRSLGAEELQRGLAELGLELDMAEVRGVCRRWDRDGSGTLDLEEFLRALRPPLSRAREAVITAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKPICPQVTLAEFQDYYSGVSASVDTDEEFVAMMTRAWRL", "length": 167, "header": "tr|F1SBU1-1|F1SBU1_PIG Computationally mapped isoform of Calcyphosine OS=Sus scrofa OX=9823 GN=CAPS PE=1 SV=4 CANONICAL=A0A4X1VQU6-1" }, "locus": { "chromosome": "2", "start_pos": 73124732, "end_pos": 73123888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014779.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014779.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014379.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014379.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IPL6-1", "protein_name": "Calcyphosine-like a isoform X1", "gene_name": "capsla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAADALQDLRQQCLSRGAAGIKGLGRMFRSMDDDGSKSLDFQEFVRGLQDYGVSVGRDQAQQIFAMMDKDGSGSINFDEFLEKLRPPMSSARMQVIRQAFQKFDKSGDGVVTVEDLQGVYNSKHHPKYKSGEWTETQVFHSFLDSFDSPHDKDGKVTLEEFVNYYSGVSASVDSDEYFISMMKSAWKL", "length": 188 }, "evidence": [ { "id": "A0A4X1VQU6", "url": "https://omabrowser.org/oma/group/A0A4X1VQU6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0VCC0-1", "protein_name": "Calcyphosin", "gene_name": "CAPS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDAVDTTMEKLRAQCLSRGASGIQGVARFFRRLDQDGSRSLDVRELQRGLAELGLVLDTAEMEGVCRRWDRDGSGTLDLEEFLRALRPPMSQAREAVVTAAFAKLDRSGDGVVTVDDLRGVYSGRTHPKVRSGEWTEEQVLRHFLDNFDSSEKDGQVTLAEFQDYYSGVSASMDTDEEFVAMMTSAWRL", "length": 189 }, "evidence": [ { "id": "A0A4X1VQU6", "url": "https://omabrowser.org/oma/group/A0A4X1VQU6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13938-1", "protein_name": "Calcyphosin", "gene_name": "CAPS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQCHRDLALSQALWGWQLSKQSGWAHPSLPHSPLPSTVHSCSWAPPHLQRHLPLATVSPGTTQLTQGPAGRTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL", "length": 275 }, "evidence": [ { "id": "A0A4X1VQU6", "url": "https://omabrowser.org/oma/group/A0A4X1VQU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VG26-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "CG10135", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHRENAYSKEAELKNLAKRELANGLDKDPIYKLRLQCFSRGATGILGLSRSFRVMDDDGSKSLSPEEFKKGVTDIGLDLTDSEIDEMFSRFDTDGSGNINMTEFLVKLRPPMNNSRISIIEKAFDKMDANGDGQITVTDLKNVYSVRDHPKYLSGEMTENQIFTQFLKNFEVGAPNPDGIVTREEFINYYATISASIDNDAYFDLMMRQAYKL", "length": 213 }, "evidence": [ { "id": "A0A4X1VQU6", "url": "https://omabrowser.org/oma/group/A0A4X1VQU6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VQU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VQU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VQU6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 56, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VR01-1", "uniprot_ac": "A0A4X1VR01", "uniprot_id": "A0A4X1VR01_PIG", "mass": { "chemical_mass": 29515.0, "monoisotopic_mass": 29515.0 }, "refseq": { "ac": "XP_020951212", "name": "calcipressin-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951212" }, "gene_names": [ { "name": "NCMAP", "type": "recommended", "evidence": [ { "id": "A0A4X1VR01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ] }, { "name": "RCAN3", "type": "recommended", "evidence": [ { "id": "A0A4X1VR01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ] }, { "name": "RCAN3", "type": "synonym", "evidence": [ { "id": "XP_020951212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951212" }, { "id": "A0A4X1VR01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ] } ], "protein_names": [ { "name": "RCAN family member 3", "type": "synonym", "evidence": [ { "id": "A0A4X1VR01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01/entry#names_and_taxonomy" } ] }, { "name": "calcipressin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020951212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951212" } ] } ], "function": [ { "annotation": "Inhibits calcineurin-dependent transcriptional responses by binding to the catalytic domain of calcineurin A. Could play a role during central nervous system development.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01#function" }, { "database": "UniProtKB", "id": "ARBA00024927", "url": "https://www.uniprot.org/uniprotkb/ARBA00024927#function" }, { "database": "UniProtKB", "id": "F1STV7", "url": "https://www.uniprot.org/uniprotkb/F1STV7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RCAN3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01", "locus": { "chromosome": "6", "start_pos": 82281641, "end_pos": 82186368, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024818", "url": "https://www.ensembl.org/id/ENSSSCG00000024818" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003547", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003547", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000024818", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024818", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12710", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12710", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522144", "url": "https://www.ncbi.nlm.nih.gov/gene/100522144", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DMHRERF", "url": "https://omabrowser.org/oma/group/DMHRERF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10300", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10300", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10300:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10300:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35974", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35974", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35974:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35974:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04847", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04847", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27960", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27960", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951212", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951212", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VR01-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VVW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VVW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STV1", "url": "https://www.uniprot.org/uniprotkb/F1STV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STV1-1", "url": "https://www.uniprot.org/uniprotkb/F1STV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STV7", "url": "https://www.uniprot.org/uniprotkb/F1STV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STV7-1", "url": "https://www.uniprot.org/uniprotkb/F1STV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGRHLRTLKTEKTCFEGTVLRDTMKSWSDSQSDLCSSDQEEEDMIFGENEEDLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGKKLKLYFAQVQVSSETRDRSYLLPPQPVKQFLISPPASPPVGWKQGEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETRTPKQKITQTRRPEPPPAALSEPRAFDCAL", "length": 259, "header": "tr|A0A4X1VR01-1|A0A4X1VR01_PIG Isoform 1 of RCAN family member 3 OS=Sus scrofa OX=9823 GN=RCAN3 PE=3 SV=1 CANONICAL=A0A4X1VR01-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VR01-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01/entry", "sequence": { "sequence": "MPGRHLRTLKTEKTCFEGTVLRDTMKSWSDSQSDLCSSDQEEEDMIFGENEEDLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGKKLKLYFAQVQVSSETRDRSYLLPPQPVKQFLISPPASPPVGWKQGEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETRTPKQKITQTRRPEPPPAALSEPRAFDCAL", "length": 259, "header": "tr|A0A4X1VR01-1|A0A4X1VR01_PIG Isoform 1 of RCAN family member 3 OS=Sus scrofa OX=9823 GN=RCAN3 PE=3 SV=1 CANONICAL=A0A4X1VR01-1" }, "locus": { "chromosome": "6", "start_pos": 82224265, "end_pos": 82196152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055337.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055337.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034896.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034896.1" } ] } }, { "isoform_ac": "A0A4X1VVW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVW9/entry", "sequence": { "sequence": "VLRDTMKSWSDSQSDLCSSDQEEEDMIFGENEEDLEEMMDLSDLPTSLFACSVHEAVFEVQEQKVQVSSETRDRSYLLPPQPVKQFLISPPASPPVGWKQGEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETRTPKQKITQTRRPEPPPAALSEPRAFDCAL", "length": 182, "header": "tr|A0A4X1VVW9-1|A0A4X1VVW9_PIG Computationally mapped isoform of RCAN family member 3 OS=Sus scrofa OX=9823 GN=RCAN3 PE=3 SV=1 CANONICAL=A0A4X1VR01-1" }, "locus": { "chromosome": "6", "start_pos": 82224265, "end_pos": 82196209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071784.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071784.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070669.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070669.2" } ] } }, { "isoform_ac": "F1STV1-1", "url": "https://www.uniprot.org/uniprotkb/F1STV1/entry", "sequence": { "sequence": "MICSVLFPNWDQITMTTATPLGGTPFFSVNMTTREEDFLYKSSGAIVAAIVVVVVIIFTVVLILLKMYNRKMRIRRELEPKSPRPASPAALGRNGNSSQHPATVTFSPVDVHVETR", "length": 116, "header": "tr|F1STV1-1|F1STV1_PIG Computationally mapped isoform of RCAN family member 3 OS=Sus scrofa OX=9823 GN=NCMAP PE=4 SV=4 CANONICAL=A0A4X1VR01-1" }, "locus": { "chromosome": "6", "start_pos": 82280954, "end_pos": 82222514, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003940.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003940.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003849.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003849.5" } ] } }, { "isoform_ac": "F1STV7-1", "url": "https://www.uniprot.org/uniprotkb/F1STV7/entry", "sequence": { "sequence": "MPGRHLRTLKTEKTCFEGTVLRDTMKSWSDSQSDLCSSDQEEEDMIFGENEEDLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGKKLKLYFAQERNMSFTQEQSQHRVWWFMSVKVRLKRKKKPEPLNRKSPRQGAPSLHLQP", "length": 191, "header": "tr|F1STV7-1|F1STV7_PIG Computationally mapped isoform of RCAN family member 3 OS=Sus scrofa OX=9823 GN=RCAN3 PE=3 SV=3 CANONICAL=A0A4X1VR01-1" }, "locus": { "chromosome": "6", "start_pos": 82224233, "end_pos": 82196152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003934.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003934.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003843.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003843.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IB17-1", "protein_name": "Calcipressin-3", "gene_name": "Rcan3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRDTMKSWNDSQSDLCSSDQEEEEEMVFGENEDELEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESDFHGQKLKLYFAQVQVSGEARDKSYLLPPQPTKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEDTKNPKQKITQTRRPEAPTAALSEQLDCAL", "length": 239 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F7ENE7-1", "protein_name": "RCAN family member 3", "gene_name": "Rcan3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRARRTRPFGAPPTTRRLPPTQLSAPPSCLCAGAAHPLGARNPGRARGARVRERARRRRPHSAPGHRPCSRLRWPLGPASRAWWLPAVKVCPPLAVLVSPPGPLPWSAQDAGIVALLCFPGFWKLVVRLLLKHRAFNSCFQAAGFQLPCEISSSPLALSGQRPRTLPTEKMLRDSLKSWNDSQSDLCSSDQEEEEEMVFGENEDDLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESEFHGRKLKLYFAQVQVSGEARDKSYLLPPQPTKQFLISPPASPPVGWKQSEDATPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEDTKNPKQKITQTRRPEAPTAALSERLDCAL", "length": 409 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KIA1-1", "protein_name": "Calcipressin-3", "gene_name": "RCAN3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLRDTMNSWNDSQSDLCSTDHEEEEEMVFGENEDDLEEMMDLSDLPTSLFACRVHEAVFEVPEQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGRKLKLYFAQVQMSGETRDKSYLQPPQPAKQFLISPPASPPVGWKQGGDATPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETKNPKQKITQTRRPEPPTAALSEPRAFDCAL", "length": 241 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5ZJV6-1", "protein_name": "Calcipressin-3", "gene_name": "RCAN3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRDTMKSWSDSQSDLYSSDQEEEEQMIFGENEDDFEEMMDLSDLPTSLFACSVHEAVFEVQEEKERFEALFTVYDNQVTFQLFKSFRRVRINFSNPEAAARARIELHETDFSGKKLKLYFAQVQVSSEVGDKSYLLPPQPVKQFLISPPASPPVGWKQSEDATPLINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEEIKNPKQKIMQTRRPEPPATILNESKAFDCTLEVGGTIHC", "length": 249 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9JKK0-1", "protein_name": "Calcipressin-3", "gene_name": "Rcan3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRDSLKSWNDSQSDLCSSDQEEEEEMVFGENEDGLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEALFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESEFHGRKLKLYFAQVQVSGEARDKSYLLPPQPTKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEDTKNPKQKITQTRRPEAPTAALSERLDCAL", "length": 239 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKA8-1", "protein_name": "Calcipressin-3", "gene_name": "RCAN3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTSLFACSVHEAVFEAREQKERFEALFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGQKLKLYFAQVQMSGEVRDKSYLLPPQPVKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEETKNPKQKIAQTRRPDPPTAALNEPQTFDCAL", "length": 241 }, "evidence": [ { "id": "A0A4X1VR01", "url": "https://omabrowser.org/oma/group/A0A4X1VR01/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "Schmidt-Lanterman incisure", "id": "GO:0043220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043220", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "paranode region of axon", "id": "GO:0033270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "calcium-mediated signaling", "id": "GO:0019722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019722", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "regulation of myelination", "id": "GO:0031641", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031641", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "calcium-dependent protein serine/threonine phosphatase regulator activity", "id": "GO:0008597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008597", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "troponin I binding", "id": "GO:0031013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" }, { "name": "structural constituent of myelin sheath", "id": "GO:0019911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 211 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VRI3-1", "uniprot_ac": "A0A4X1VRI3", "uniprot_id": "A0A4X1VRI3_PIG", "mass": { "chemical_mass": 11889.0, "monoisotopic_mass": 11889.0 }, "refseq": { "ac": "NP_001172103", "name": "death-associated protein-like 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172103" }, "gene_names": [ { "name": "DAPL1", "type": "recommended", "evidence": [ { "id": "A0A4X1VRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ] }, { "name": "DAPL1", "type": "synonym", "evidence": [ { "id": "NP_001172103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172103" } ] } ], "protein_names": [ { "name": "Death associated protein like 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3/entry#names_and_taxonomy" } ] }, { "name": "death-associated protein-like 1", "type": "synonym", "evidence": [ { "id": "NP_001172103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172103" } ] }, { "name": "early epithelial differentiation-associated protein", "type": "synonym", "evidence": [ { "id": "NP_001172103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172103" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DAPL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3", "locus": { "chromosome": "15", "start_pos": 65820448, "end_pos": 65796462, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015879", "url": "https://www.ensembl.org/id/ENSSSCG00000015879" } ] } } ], "crossref": [ { "id": "A0A4X1VRI3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VRI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100157537", "url": "https://www.ncbi.nlm.nih.gov/gene/100157537", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157537", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157537", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNRMQQV", "url": "https://omabrowser.org/oma/group/PNRMQQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VRI3", "url": "https://www.orthodb.org/?gene=A0A4X1VRI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13177:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13177:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15228", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15228", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001172103", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172103", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VRI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANEVQVQLSPLKGGHPPAVKAGGKRISKKQEIGVLERHTKRTGLEKTSAIANVAKIQTMDALNDTLEKLSHKFPAIVHMAHQKPRPALEKVTPLKRIYIIQQPRKC", "length": 107, "header": "tr|A0A4X1VRI3-1|A0A4X1VRI3_PIG Isoform 1 of Death associated protein like 1 OS=Sus scrofa OX=9823 GN=DAPL1 PE=4 SV=1 CANONICAL=A0A4X1VRI3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VRI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3/entry", "sequence": { "sequence": "MANEVQVQLSPLKGGHPPAVKAGGKRISKKQEIGVLERHTKRTGLEKTSAIANVAKIQTMDALNDTLEKLSHKFPAIVHMAHQKPRPALEKVTPLKRIYIIQQPRKC", "length": 107, "header": "tr|A0A4X1VRI3-1|A0A4X1VRI3_PIG Isoform 1 of Death associated protein like 1 OS=Sus scrofa OX=9823 GN=DAPL1 PE=4 SV=1 CANONICAL=A0A4X1VRI3-1" }, "locus": { "chromosome": "15", "start_pos": 65820283, "end_pos": 65796495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017291.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017291.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016828.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016828.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157537", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157537", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0PJW8-1", "protein_name": "Death-associated protein-like 1", "gene_name": "DAPL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANEVQDLLSPRKGGHPPAVKAGGMRISKKQEIGTLERHTKKTGFEKTSAIANVAKIQTLDALNDALEKLNYKFPATVHMAHQKPTPALEKVVPLKRIYIIQQPRKC", "length": 107 }, "evidence": [ { "id": "A0A4X1VRI3", "url": "https://omabrowser.org/oma/group/A0A4X1VRI3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A2VEA7-1", "protein_name": "Death-associated protein-like 1", "gene_name": "DAPL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANEVQVQLSPLKGGHPPAVKAGGKRISKKQEIGILERHTKKTGLEKTSATANVAKIQTMDALNDTLEKLSHKFPAVAHMAHQKPRPALEKVTPLKRIYIIQQPRKC", "length": 107 }, "evidence": [ { "id": "A0A4X1VRI3", "url": "https://omabrowser.org/oma/group/A0A4X1VRI3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7FMI3-1", "protein_name": "Death associated protein-like 1", "gene_name": "Dapl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQLQLALSLRAPTRHWHTDTMANEVQVLSSPLKGRHAPAVKAGGMRISKKQEMGVLERHTKKTGLEKTSAITNVAKIQMLDTLTDTLDKLHHKFPATVHTAHQKPTPALEKAAPLKRAYIIQQPRKC", "length": 128 }, "evidence": [ { "id": "A0A4X1VRI3", "url": "https://omabrowser.org/oma/group/A0A4X1VRI3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D757-1", "protein_name": "Death-associated protein-like 1", "gene_name": "Dapl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANEVQVLPSPLKGRYAPAVKAGGMRISKKQEMGVLERHTKKTGLEKTSAITNVAKIQMLDALTDTLDKLNHKFPATVHTAHQKPTPALEKAAPMKRAYIIQQPRKC", "length": 107 }, "evidence": [ { "id": "A0A4X1VRI3", "url": "https://omabrowser.org/oma/group/A0A4X1VRI3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9I9N0-1", "protein_name": "Death-associated protein-like 1 homolog", "gene_name": "dap1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVQLSKTGVRDTLKAGHPPAVKAGGKRVVKKSADENANVEKETRKTDKPRSVLAPSRMQHLSLLLSGPLEKLGHDFPETPVSVRHSRVRPSVEKPHISRIPCIQQPRKF", "length": 109 }, "evidence": [ { "id": "A0A4X1VRI3", "url": "https://omabrowser.org/oma/group/A0A4X1VRI3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "apoptotic signaling pathway", "id": "GO:0097190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097190", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" }, { "name": "negative regulation of autophagy", "id": "GO:0010507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010507", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" }, { "name": "negative regulation of CD8-positive, alpha-beta T cell activation", "id": "GO:2001186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001186", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" }, { "name": "ribosome hibernation", "id": "GO:0141014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141014", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRI3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VU71-1", "uniprot_ac": "A0A4X1VU71", "uniprot_id": "A0A4X1VU71_PIG", "mass": { "chemical_mass": 13837.0, "monoisotopic_mass": 13837.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100513346", "type": "recommended", "evidence": [ { "id": "A0A4X1VU71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71" } ] } ], "protein_names": [ { "name": "Mitochondria-associated granulocyte macrophage CSF-signaling molecule", "type": "recommended", "evidence": [ { "id": "A0A4X1VU71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Regulates ATP-dependent protein translocation into the mitochondrial matrix. Inhibits DNAJC19 stimulation of HSPA9/Mortalin ATPase activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRL6#function" }, { "database": "UniProtKB", "id": "ARBA00058448", "url": "https://www.uniprot.org/uniprotkb/ARBA00058448#function" }, { "database": "UniProtKB", "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71#function" }, { "database": "UniProtKB", "id": "A0A5G2RBH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBH6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513346", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71", "locus": {} } ], "crossref": [ { "id": "A0A4X1VU71", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VU71", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007947", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007947", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513346", "url": "https://www.ncbi.nlm.nih.gov/gene/100513346", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RMFKIND", "url": "https://omabrowser.org/oma/group/RMFKIND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12388:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12388:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03656", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03656", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VRL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VRL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VU71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSPEEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEEELRIQAQEDRERQQTPGT", "length": 125, "header": "tr|A0A4X1VU71-1|A0A4X1VU71_PIG Isoform 1 of Mitochondria-associated granulocyte macrophage CSF-signaling molecule OS=Sus scrofa OX=9823 GN=LOC100513346 PE=1 SV=1 CANONICAL=A0A4X1VU71-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VRL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRL6/entry", "sequence": { "sequence": "MAKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSPEEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEEELRIQAQEDRERQQTPGT", "length": 125, "header": "tr|A0A4X1VRL6-1|A0A4X1VU71_PIG Computationally mapped isoform of Mitochondria-associated granulocyte macrophage CSF-signaling molecule OS=Sus scrofa OX=9823 GN=LOC100513346 PE=1 SV=1 CANONICAL=A0A4X1VU71-1" }, "locus": { "chromosome": "3", "start_pos": 37997347, "end_pos": 37989257, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044300.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044300.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042554.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042554.1" } ] } }, { "isoform_ac": "A0A4X1VU71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71/entry", "sequence": { "sequence": "MPPYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSPEEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEEELRIQAQEDRERQQTPGT", "length": 125, "header": "tr|A0A4X1VU71-1|A0A4X1VU71_PIG Isoform 1 of Mitochondria-associated granulocyte macrophage CSF-signaling molecule OS=Sus scrofa OX=9823 GN=LOC100513346 PE=1 SV=1 CANONICAL=A0A4X1VU71-1" }, "locus": { "chromosome": "3", "start_pos": 37997347, "end_pos": 37995456, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008710.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008710.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008486.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008486.4" } ] } }, { "isoform_ac": "A0A5G2RBH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBH6/entry", "sequence": { "sequence": "AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSPEEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLEEELRIQAQEENVSYDRKRHLEPVKILTSWNVQQQTNNNNTYTGPWGPGLS", "length": 155, "header": "tr|A0A5G2RBH6-1|A0A5G2RBH6_PIG Computationally mapped isoform of Mitochondria-associated granulocyte macrophage CSF-signaling molecule OS=Sus scrofa OX=9823 GN=LOC100513346 PE=1 SV=2 CANONICAL=A0A4X1VU71-1" }, "locus": { "chromosome": "3", "start_pos": 37998325, "end_pos": 37995492, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085352.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085352.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071521.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071521.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRL6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZMD9-1", "protein_name": "Mitochondria-associated granulocyte macrophage CSF-signaling molecule", "gene_name": "Pam16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKGRNNLVHQSQGTKSVSSYPGAGSAHRLRPHARCRESHASGNASRPCARALPSSLTSDPPATLELVPLGREAAPVPVKWSGRHGLWELQCEDEEPRKGSLAESTDPTQEPATWCFFCPQAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQILNISKLSPEEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREKGQTPKT", "length": 244 }, "evidence": [ { "id": "A0A4X1VU71", "url": "https://omabrowser.org/oma/group/A0A4X1VU71/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P42949-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM16", "gene_name": "PAM16", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAHRAFIQVIITGTQVFGKAFAEAYRQAASQSVKQGATNASRRGTGKGEYGGITLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQREKNAKAKAGDASTAKPPPNSTNSSGADNSASSNQ", "length": 149 }, "evidence": [ { "id": "A0A4X1VU71", "url": "https://omabrowser.org/oma/group/A0A4X1VU71/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q6PBL0-1", "protein_name": "Mitochondrial import inner membrane translocase subunit tim16", "gene_name": "pam16", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQILNISTLTPEEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLDEELSINQQQQTKNKHADEQQQQT", "length": 129 }, "evidence": [ { "id": "A0A4X1VU71", "url": "https://omabrowser.org/oma/group/A0A4X1VU71/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q93VV9-1", "protein_name": "Mitochondrial import inner membrane translocase subunit PAM16 like 2", "gene_name": "PAM16L2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS", "length": 116 }, "evidence": [ { "id": "A0A4X1VU71", "url": "https://omabrowser.org/oma/group/A0A4X1VU71/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQV1-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM16", "gene_name": "Pam16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSPEEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREKGQKPKT", "length": 125 }, "evidence": [ { "id": "A0A4X1VU71", "url": "https://omabrowser.org/oma/group/A0A4X1VU71/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into mitochondrial matrix", "id": "GO:0030150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030150", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "PAM complex, Tim23 associated import motor", "id": "GO:0001405", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001405", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71" } ], "pmid": "" }, { "name": "TIM23 mitochondrial import inner membrane translocase complex", "id": "GO:0005744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005744", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VU71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VU71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VRW9-1", "uniprot_ac": "A0A4X1VRW9", "uniprot_id": "A0A4X1VRW9_PIG", "mass": { "chemical_mass": 24867.0, "monoisotopic_mass": 24867.0 }, "refseq": {}, "gene_names": [ { "name": "TEKTIP1", "type": "recommended", "evidence": [ { "id": "A0A4X1VRW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ] } ], "protein_names": [ { "name": "Tektin bundle interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VRW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEKTIP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9", "locus": { "chromosome": "2", "start_pos": 75118832, "end_pos": 75122026, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000056892", "url": "https://www.ensembl.org/id/ENSSSCG00000056892" } ] } } ], "crossref": [ { "id": "A0A4X1VRW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VRW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR029203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EAWYNLP", "url": "https://omabrowser.org/oma/group/EAWYNLP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31254:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31254:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQTLRRKAAQPYVPRDTLEVDFPASLYSDDYLSQEGPRWTPAIKQATRWKYTPMGRDAAGQLWYTGLTNSDSREAWYTVPRALDSPYREAYARWHGCYRHREQSMPSAYAQRLWETAWYDPIIPAQYRDPSTRWGSMLWKDRPIRGKEYVINRHRFGVEPLWRASDYVPYLSAPQHPRYTAQNYRQWDLEPYCPSTNQRPPPNYTPIHG", "length": 209, "header": "tr|A0A4X1VRW9-1|A0A4X1VRW9_PIG Isoform 1 of Tektin bundle interacting protein 1 OS=Sus scrofa OX=9823 GN=TEKTIP1 PE=4 SV=1 CANONICAL=A0A4X1VRW9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9/entry", "sequence": { "sequence": "MQTLRRKAAQPYVPRDTLEVDFPASLYSDDYLSQEGPRWTPAIKQATRWKYTPMGRDAAGQLWYTGLTNSDSREAWYTVPRALDSPYREAYARWHGCYRHREQSMPSAYAQRLWETAWYDPIIPAQYRDPSTRWGSMLWKDRPIRGKEYVINRHRFGVEPLWRASDYVPYLSAPQHPRYTAQNYRQWDLEPYCPSTNQRPPPNYTPIHG", "length": 209, "header": "tr|A0A4X1VRW9-1|A0A4X1VRW9_PIG Isoform 1 of Tektin bundle interacting protein 1 OS=Sus scrofa OX=9823 GN=TEKTIP1 PE=4 SV=1 CANONICAL=A0A4X1VRW9-1" }, "locus": { "chromosome": "2", "start_pos": 75121827, "end_pos": 75118854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099368.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099368.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077727.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AJH1-1", "protein_name": "Tektin bundle interacting protein 1", "gene_name": "C19orf71", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPGVRRAWVPQSTLEAEFPLPLCSEQYVTLRGPRCAPVLRQAVRWKMAPLGRDAVGQSWWTEPSCHGAEDTQYSLTHSTAWQRWQRSQSAPERQPLPPVYDQHLREAACWDPTVPAAYPGPGTRWGAFLWQERPILGKEYVATRSQSTAAQGGSPGYVPLLSFCRPPTTRRDVCSWSLLQHQPSAPQ", "length": 188 }, "evidence": [ { "id": "A0A4X1VRW9", "url": "https://omabrowser.org/oma/group/A0A4X1VRW9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6H6Q4-1", "protein_name": "Tektin bundle-interacting protein 1", "gene_name": "Tektip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENVRREATRPSVPSGTLELYFPDHLYRNDYVSLEGPRWAPAIKQAVRWKFTPMGRDAAGQVWFTGLTNSEPGDAWYKLPRALDTPYREAHTRWHGCFQSRQRGLPPAYTQHLREMAFWDPAITAQYLNSGPRWGCMQWRDRQIRGKEFVVTRNQFGAKLPWRSDYVPLLSLPQRPRFTAQDFRQRGLQRPCPAIGQPPPAFTPAL", "length": 206 }, "evidence": [ { "id": "A0A4X1VRW9", "url": "https://omabrowser.org/oma/group/A0A4X1VRW9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A6NCJ1-1", "protein_name": "Tektin bundle-interacting protein 1", "gene_name": "TEKTIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQTLRQEAARPCIPSGTLEASFPAPLYSDDYLSLEGSRWPPAIRQATRWKYTPMGRDAAGQLWYTGLTNSDAWEAWYNLPRAPASPFREAYNRWHSCYQHRECSMPSAYTQHLRETAWHDPIVPAQYQAPSTRWGSALWKDRPIRGKEYVLNRNRYGVEPLWRASDYVPSLSAPQRPPGTTQNYREWVLEPYCPSTCQRSPPSLTPTPR", "length": 209 }, "evidence": [ { "id": "A0A4X1VRW9", "url": "https://omabrowser.org/oma/group/A0A4X1VRW9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D4A8Z4-1", "protein_name": "Tektin bundle interacting protein 1", "gene_name": "Tektip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MENVRREATRPFVPSGTLELYFPDHLYRNDYLSMEGPRWAQAIKQAVRWKFTPMGQDAAGQMWYTGLTNSNPCDAWYMLPRALDMPYREAHTRWHGCFQSRQRDLPPAYTQHLRETAFWDPAIPPQYLNPGTRWGCLQWRDRQIRGKEFVVNRNQFGAELPRRSDYVQDLSPPHRPRFTAQDFKQRGLDRPYPATGQPPPVFTPTL", "length": 206 }, "evidence": [ { "id": "A0A4X1VRW9", "url": "https://omabrowser.org/oma/group/A0A4X1VRW9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HSJ9-1", "protein_name": "Uncharacterized protein C19orf71 homolog", "gene_name": "CUNH19orf71", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MENLRREAARPFVPSGTLELYFPAPLYSNDYMSLEGPRWAPSIQQALRWKFTPMGQDAAGQAWLTGLTNSEPRDAWYMLPRSLDSPFREALTRWNGCFQSRQRGLPSAYTQRLRETAFWDPTLPAQYLNPGTRWGCVPWRDRRIRGKEFVVNRNQFGAPVPWRSDYVPYLSPPQRPRYTSQDFKQLGRQRPCPATGQMPPTFTPSL", "length": 206 }, "evidence": [ { "id": "A0A4X1VRW9", "url": "https://omabrowser.org/oma/group/A0A4X1VRW9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VS38-1", "uniprot_ac": "A0A4X1VS38", "uniprot_id": "A0A4X1VS38_PIG", "mass": { "chemical_mass": 38532.0, "monoisotopic_mass": 38532.0 }, "refseq": { "ac": "XP_003356262", "name": "serine/threonine-protein kinase PDIK1L isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356262" }, "gene_names": [ { "name": "PDIK1L", "type": "recommended", "evidence": [ { "id": "A0A4X1VS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ] }, { "name": "PDIK1L", "type": "synonym", "evidence": [ { "id": "XP_003356262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356262" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase PDIK1L", "type": "recommended", "evidence": [ { "id": "A0A4X1VS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "A0A4X1VS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38/entry#names_and_taxonomy" } ] }, { "name": "PDLIM1-interacting kinase 1-like", "type": "synonym", "evidence": [ { "id": "A0A4X1VS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase PDIK1L isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003356262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356262" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDIK1L", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38", "locus": { "chromosome": "6", "start_pos": 83554864, "end_pos": 83543780, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030660", "url": "https://www.ensembl.org/id/ENSSSCG00000030660" } ] } } ], "crossref": [ { "id": "A0A4X1VS38", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VS38", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13977", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13977", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624130", "url": "https://www.ncbi.nlm.nih.gov/gene/100624130", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624130", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVQKMAH", "url": "https://omabrowser.org/oma/group/MVQKMAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VS38", "url": "https://www.orthodb.org/?gene=A0A4X1VS38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11042:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11042:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003356262", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356262", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1U4I6", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U4I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1U4I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U4I6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341, "header": "tr|A0A4X1VS38-1|A0A4X1VS38_PIG Isoform 1 of Serine/threonine-protein kinase PDIK1L OS=Sus scrofa OX=9823 GN=PDIK1L PE=3 SV=1 CANONICAL=A0A4X1VS38-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38/entry", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341, "header": "tr|A0A4X1VS38-1|A0A4X1VS38_PIG Isoform 1 of Serine/threonine-protein kinase PDIK1L OS=Sus scrofa OX=9823 GN=PDIK1L PE=3 SV=1 CANONICAL=A0A4X1VS38-1" }, "locus": { "chromosome": "6", "start_pos": 83551313, "end_pos": 83545895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041960.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041960.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034488.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034488.1" } ] } }, { "isoform_ac": "A0A8D1U4I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U4I6/entry", "sequence": { "sequence": "MVSSQPKYDLIREKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 317, "header": "tr|A0A8D1U4I6-1|A0A8D1U4I6_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PDIK1L PE=4 SV=1 CANONICAL=A0A4X1VS38-1" }, "locus": { "chromosome": "6", "start_pos": 83551313, "end_pos": 83545895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028111.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028111.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022700.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022700.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624130", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624130", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z2E3-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "PDIK1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVVRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSSSSLYLQLVETSLKGEIVFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRMDASDLEPTLKVADFGLSKVCSASGQNPEEPVNVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGAAIVPVGEALLENPKMELLIPVKKKSMNAQMKQLIKEMLAANPQDRPDAFELELRLVNIAFKDSSWDT", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZKW5-1", "protein_name": "Serine/threonine-protein kinase PDIK1L", "gene_name": "Pdik1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I3E2-1", "protein_name": "Serine/threonine-protein kinase PDIK1L", "gene_name": "Pdik1l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAIIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q32PP3-1", "protein_name": "Serine/threonine-protein kinase pdik1l", "gene_name": "pdik1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVSSQAKYELIQEVGRGSYGVVYEAVVRQTGARVAVEKIRCHSPENVELALREFWALSSIQSQHPNVIHLEECVLQRDALAQRMSHGSSSSLYLELVETSLKGEITFDPCCAYYMWFVMDFCDGGDMNAYLLSRKPSRKTNTSFMLQLGSALAFLHRNQIIHRDLKPDNILISQGRTPAGSPEPTLKVADFGLSKVCSGSGLNPEEPASVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGVIIWAMVERITFVDVETQKELLGSYVQQGEDIVPLGEALLENPKMELNIPARKKSMNASMKQLIREMLSANPQERPDAFELELRLVRIACRELDWDT", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N165-1", "protein_name": "Serine/threonine-protein kinase PDIK1L", "gene_name": "PDIK1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8QZR7-1", "protein_name": "Serine/threonine-protein kinase PDIK1L", "gene_name": "Pdik1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQSRMDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET", "length": 341 }, "evidence": [ { "id": "A0A4X1VS38", "url": "https://omabrowser.org/oma/group/A0A4X1VS38/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of G2/M transition of mitotic cell cycle", "id": "GO:0010972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010972", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" }, { "name": "negative regulation of G2/MI transition of meiotic cell cycle", "id": "GO:0110031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS38", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS38" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 334, "start_aa": "Tyr", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VSF7-1", "uniprot_ac": "A0A4X1VSF7", "uniprot_id": "A0A4X1VSF7_PIG", "mass": { "chemical_mass": 24722.0, "monoisotopic_mass": 24722.0 }, "refseq": { "ac": "XP_001926735", "name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926735" }, "gene_names": [ { "name": "ARL6IP6", "type": "recommended", "evidence": [ { "id": "A0A4X1VSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7" } ] }, { "name": "ARL6IP6", "type": "synonym", "evidence": [ { "id": "XP_001926735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926735" } ] } ], "protein_names": [ { "name": "ADP ribosylation factor like GTPase 6 interacting protein 6", "type": "synonym", "evidence": [ { "id": "A0A4X1VSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7/entry#names_and_taxonomy" } ] }, { "name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "type": "synonym", "evidence": [ { "id": "XP_001926735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926735" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARL6IP6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7", "locus": { "chromosome": "15", "start_pos": 60471316, "end_pos": 60440308, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015868", "url": "https://www.ensembl.org/id/ENSSSCG00000015868" } ] } } ], "crossref": [ { "id": "A0A4X1VSF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VSF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100152698", "url": "https://www.ncbi.nlm.nih.gov/gene/100152698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152698", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TVAWCLL", "url": "https://omabrowser.org/oma/group/TVAWCLL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VSF7", "url": "https://www.orthodb.org/?gene=A0A4X1VSF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28640", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28640", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28640:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28640:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926735", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VSF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFVESGRRPAPLRRRPGTPVPFARPAFSASTQGDSWGEGEVDEEEGCDRVARDLRAEFSARASPEPRKDSLLRPDGDGSSLLADKRNGILADAGGRTRARRWPVQVLSILCSLLFAILLAFLLAITYLIVKELHAENLKNEDDVHTGLLGFWTLLIISLTAGFSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMAILNGIVAALTVAWCLM", "length": 225, "header": "tr|A0A4X1VSF7-1|A0A4X1VSF7_PIG Isoform 1 of ADP ribosylation factor like GTPase 6 interacting protein 6 OS=Sus scrofa OX=9823 GN=ARL6IP6 PE=4 SV=1 CANONICAL=A0A4X1VSF7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VSF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7/entry", "sequence": { "sequence": "MSFVESGRRPAPLRRRPGTPVPFARPAFSASTQGDSWGEGEVDEEEGCDRVARDLRAEFSARASPEPRKDSLLRPDGDGSSLLADKRNGILADAGGRTRARRWPVQVLSILCSLLFAILLAFLLAITYLIVKELHAENLKNEDDVHTGLLGFWTLLIISLTAGFSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMAILNGIVAALTVAWCLM", "length": 225, "header": "tr|A0A4X1VSF7-1|A0A4X1VSF7_PIG Isoform 1 of ADP ribosylation factor like GTPase 6 interacting protein 6 OS=Sus scrofa OX=9823 GN=ARL6IP6 PE=4 SV=1 CANONICAL=A0A4X1VSF7-1" }, "locus": { "chromosome": "15", "start_pos": 60471302, "end_pos": 60440639, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017279.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017279.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016817.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016817.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152698", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3MHM8-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "gene_name": "ARL6IP6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFVESGRRSAPLRRRPGTPVPFARPAYSVFSQGDSWGEGEVEEEEGCDQVARDLRAEFSAGSSSKLRKDPVLQPDGDGSPVLPDKRNGIFSADAGGKALARRWPVQVLSILCSLLFAILLACLLAITYLIVKELHAENLKNEDDVNTGLLGFWSLLIISLTAGFSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKMTGHSFHMGYSMAILNGIVAALTVAWCLM", "length": 226 }, "evidence": [ { "id": "A0A4X1VSF7", "url": "https://omabrowser.org/oma/group/A0A4X1VSF7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68FV2-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "gene_name": "Arl6ip6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFVESWRSVGPRRRRQVTPGPVTRSVYSDYTQGNSWSEDGDEGCDQVARDLRAEFSARASSESKRAPLLPRIGDGSPVLPDKRNGIFPATAAKRTQARRWPIQALSILCSLLFAVLLAFLLAIAYLIVKELHTENSKNEDVVDTGLLGFWSLLIISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMAILNGVVAALTVAWCLM", "length": 223 }, "evidence": [ { "id": "A0A4X1VSF7", "url": "https://omabrowser.org/oma/group/A0A4X1VSF7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BH07-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "gene_name": "Arl6ip6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFVESWRFAGARRRRQVTPGPATRPGYSDYTQGDSWGEGEGDEDEGCDQVARDLRAEFSARASSETKRAPLLPRVGDGSPVLPDKRNGIFPATAAKRTQARRWPIQALSILCSLLFAVLLAFLLAIAYMIVKELHAENLKNEDDIHTGLLGFWSLLIISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMAILNGIVAALTVAWCLM", "length": 226 }, "evidence": [ { "id": "A0A4X1VSF7", "url": "https://omabrowser.org/oma/group/A0A4X1VSF7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6S5-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 6", "gene_name": "ARL6IP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFAESGWRSALRRRGPGTPGPVARPSYSSFTQGDSWGEGEVDEEEGCDQVARDLRAEFSAGAWSEPRKRSVLPPDGNGSPVLPDKRNGIFPAAAGSRAQPRRWPVQVLSILCSLLFAILLAFLLAIAYLIVKELHAENLKNEDDVDTGLLGFWTLLIISLTAGFSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMAILNGIVAALTVAWCLM", "length": 226 }, "evidence": [ { "id": "A0A4X1VSF7", "url": "https://omabrowser.org/oma/group/A0A4X1VSF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VSK4-1", "uniprot_ac": "A0A4X1VSK4", "uniprot_id": "A0A4X1VSK4_PIG", "mass": { "chemical_mass": 20071.0, "monoisotopic_mass": 20071.0 }, "refseq": {}, "gene_names": [ { "name": "C16orf90", "type": "recommended", "evidence": [ { "id": "A0A4X1VSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4" } ] } ], "protein_names": [ { "name": "Chromosome 3 C16orf90 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1VSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C16orf90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4", "locus": { "chromosome": "3", "start_pos": 38762463, "end_pos": 38759975, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007957", "url": "https://www.ensembl.org/id/ENSSSCG00000007957" } ] } } ], "crossref": [ { "id": "A0A4X1VSK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VSK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR027978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37334:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37334:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VSK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALVCAFSELRIREDAVSWARGRPGHPDTPSNIYEGGLGAQQQPQCPRAQGSKPKNFRLRHLRGLALYLPGHMQLAGQCESHWLGRLMAWGCFPQPEGMAWPLDLPQGNLGPGISHCSVLLEAQLPRGSLGNIASSSSMDSAKGVPSQPSPPEGLGLRPKRSWGASEESTCPLCKRTRSGALERP", "length": 186, "header": "tr|A0A4X1VSK4-1|A0A4X1VSK4_PIG Isoform 1 of Chromosome 3 C16orf90 homolog OS=Sus scrofa OX=9823 GN=C16orf90 PE=4 SV=1 CANONICAL=A0A4X1VSK4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VSK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4/entry", "sequence": { "sequence": "MEALVCAFSELRIREDAVSWARGRPGHPDTPSNIYEGGLGAQQQPQCPRAQGSKPKNFRLRHLRGLALYLPGHMQLAGQCESHWLGRLMAWGCFPQPEGMAWPLDLPQGNLGPGISHCSVLLEAQLPRGSLGNIASSSSMDSAKGVPSQPSPPEGLGLRPKRSWGASEESTCPLCKRTRSGALERP", "length": 186, "header": "tr|A0A4X1VSK4-1|A0A4X1VSK4_PIG Isoform 1 of Chromosome 3 C16orf90 homolog OS=Sus scrofa OX=9823 GN=C16orf90 PE=4 SV=1 CANONICAL=A0A4X1VSK4-1" }, "locus": { "chromosome": "3", "start_pos": 38761459, "end_pos": 38760133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008720.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008720.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008496.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008496.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VSM1-1", "uniprot_ac": "A0A4X1VSM1", "uniprot_id": "A0A4X1VSM1_PIG", "mass": { "chemical_mass": 20963.0, "monoisotopic_mass": 20963.0 }, "refseq": { "ac": "XP_020939782", "name": "small integral membrane protein 24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939782" }, "gene_names": [ { "name": "SMIM24", "type": "recommended", "evidence": [ { "id": "A0A4X1VSM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1" } ] }, { "name": "SMIM24", "type": "synonym", "evidence": [ { "id": "XP_020939782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939782" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 24", "type": "synonym", "evidence": [ { "id": "A0A4X1VSM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 24", "type": "synonym", "evidence": [ { "id": "XP_020939782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939782" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSM1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM24", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1", "locus": {} } ], "crossref": [ { "id": "A0A4X1VSM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VSM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038067", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038067", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737370", "url": "https://www.ncbi.nlm.nih.gov/gene/100737370", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737370", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NPYQDES", "url": "https://omabrowser.org/oma/group/NPYQDES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VSM1", "url": "https://www.orthodb.org/?gene=A0A4X1VSM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15296:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15296:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15807", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15807", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VSM1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H7", "url": "https://www.uniprot.org/uniprotkb/I3L8H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H7-1", "url": "https://www.uniprot.org/uniprotkb/I3L8H7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPTRWGTGRAPALDLLRLQTCLPPYQGLGRVSPGSDQDCALQHPGCWFLGAMGTLETLLLLSALLLSPAEAQQASEYRLKPWLVGLAAVVGFLFIVFVLMLTNRLWCSKERAEDEEGSILRMNTNPYENVDLSKEGKKEKKEKEKKTNNNKKAEDKKSKKKGESNLGLELEEKEEPQDEEKVKNTAM", "length": 187, "header": "tr|A0A4X1VSM1-1|A0A4X1VSM1_PIG Isoform 1 of Small integral membrane protein 24 OS=Sus scrofa OX=9823 GN=SMIM24 PE=1 SV=1 CANONICAL=A0A4X1VSM1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VSM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1/entry", "sequence": { "sequence": "MPTRWGTGRAPALDLLRLQTCLPPYQGLGRVSPGSDQDCALQHPGCWFLGAMGTLETLLLLSALLLSPAEAQQASEYRLKPWLVGLAAVVGFLFIVFVLMLTNRLWCSKERAEDEEGSILRMNTNPYENVDLSKEGKKEKKEKEKKTNNNKKAEDKKSKKKGESNLGLELEEKEEPQDEEKVKNTAM", "length": 187, "header": "tr|A0A4X1VSM1-1|A0A4X1VSM1_PIG Isoform 1 of Small integral membrane protein 24 OS=Sus scrofa OX=9823 GN=SMIM24 PE=1 SV=1 CANONICAL=A0A4X1VSM1-1" }, "locus": { "chromosome": "2", "start_pos": 75181719, "end_pos": 75178872, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046435.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046435.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046152.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046152.1" } ] } }, { "isoform_ac": "I3L8H7-1", "url": "https://www.uniprot.org/uniprotkb/I3L8H7/entry", "sequence": { "sequence": "MGTLETLLLLSALLLSPAEAQQASEYRLKPWLVGLAAVVGFLFIVFVLMLTNRLWCSKERWEPLSPASWPPIPGPPSPTNNNKKAEDKKSKKKGESNLGLELEEKEEPQDEEKVKNTAM", "length": 119, "header": "tr|I3L8H7-1|I3L8H7_PIG Computationally mapped isoform of Small integral membrane protein 24 OS=Sus scrofa OX=9823 GN=SMIM24 PE=1 SV=2 CANONICAL=A0A4X1VSM1-1" }, "locus": { "chromosome": "2", "start_pos": 75181719, "end_pos": 75179025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031600.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031600.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020337.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020337.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSM1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737370", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BI71-1", "protein_name": "Small integral membrane protein 24", "gene_name": "SMIM24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGTLGILLLLMGLLLSSVEAQKERQLKPWLVGLAAVVGFLFIVFILMLASRLWCSKARAEDEERPTLRMNPNPYEEVDLRKEDKKGKEEKEEKAEEKKAGKGEKAKKKGKRNFGLELEENEERRDYKKVRNTAM", "length": 134 }, "evidence": [ { "id": "A0A4X1VSM1", "url": "https://omabrowser.org/oma/group/A0A4X1VSM1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75264-1", "protein_name": "Small integral membrane protein 24", "gene_name": "SMIM24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METLGALLVLEFLLLSPVEAQQATEHRLKPWLVGLAAVVGFLFIVYLVLLANRLWCSKARAEDEEETTFRMESNLYQDQSEDKREKKEAKEKEEKRKKEKKTAKEGESNLGLDLEEKEPGDHERAKSTVM", "length": 130 }, "evidence": [ { "id": "A0A4X1VSM1", "url": "https://omabrowser.org/oma/group/A0A4X1VSM1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0VG18-1", "protein_name": "Small integral membrane protein 24", "gene_name": "Smim24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLGRLLLLATLFLTPAEAQQASERRLKPWLVGLAAVVGFLFIVFILMLANRVWCAKGRAEDEEATFRMEHIMNENSQPSKADKKQKKKVDRKGGQSNEALELEEKESSDEERGKKTAL", "length": 120 }, "evidence": [ { "id": "A0A4X1VSM1", "url": "https://omabrowser.org/oma/group/A0A4X1VSM1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSM1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VSR6-1", "uniprot_ac": "A0A4X1VSR6", "uniprot_id": "A0A4X1VSR6_PIG", "mass": { "chemical_mass": 73989.0, "monoisotopic_mass": 73989.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF613", "type": "recommended", "evidence": [ { "id": "A0A4X1VSR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ] } ], "protein_names": [ { "name": "Zinc finger protein 613", "type": "synonym", "evidence": [ { "id": "A0A4X1VSR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF613", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6", "locus": { "chromosome": "6", "start_pos": 58166101, "end_pos": 58183504, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032585", "url": "https://www.ensembl.org/id/ENSSSCG00000032585" } ] } } ], "crossref": [ { "id": "A0A4X1VSR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VSR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032585", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032585", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KFPECGN", "url": "https://omabrowser.org/oma/group/KFPECGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZLB7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKDQGSLTLEDVAVDFTWEEWQLLTPDQKDLYRDVTLENHRNLVAVGYQALKPDALSRLERGELWPEEDEILGQICPEMRKDNCHLQKDLKNQRCPKRMEQCLKHNTLGNIVHQSKRNFPLKQNHNIFDLRGKALKLNLVSQSRSYKGKNPVEVNGDTKSFLHAKREQFHVEIKFPEHGSYMNSNSQFIKPLETQKMNKPHVCTECGKAFVKKSRLIDHQRVHTGEKPHGCSVCGKAFSRKSRLSEHQKTHIGEKWYACTECDKAFPKKSRLLLHQKTHTGEKPYVCDECGKGFIKKSRLINHQRVHTGEKPHGCSLCDKAFSRKSRLIEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKTHTGEKSYVCSECGKGFIQKGNLIVHQRTHTGEKPYVCSECGKGFIQKGNLLIHQRTHTGEKPYVCTECGKGFSQKTCLISHQRFHTGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYRCNDCGKAFRDKSCLNRHRRTHTGERPYGCTDCGKAFSHLSCLVYHKGMLHTREKRGGSVKLENPFSKSPSSSQSRDIIQERNSISMVTIQTPSVAAQTPLDFIGFLADKNGALVGQPGARCAPSAGNRSCTEEKPNECGGTFSDQLHHTLCHRNHTGINCDMVKVENP", "length": 651, "header": "tr|A0A4X1VSR6-1|A0A4X1VSR6_PIG Isoform 1 of Zinc finger protein 613 OS=Sus scrofa OX=9823 GN=ZNF613 PE=3 SV=1 CANONICAL=A0A4X1VSR6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLB7/entry", "sequence": { "sequence": "GSLTLEDVAVDFTWEEWQLLTPDQKDLYRDVTLENHRNLVAVGYQALKPDALSRLERGELWPEEDEILGQICPEMRKDNCHLQKDLKNQRCPKRMEQCLKHNTLGNIVHQSKRNFPLKQNHNIFDLRGKALKLNLVSQSRSYKGKNPVEVNGDTKSFLHAKREQFHVEIKFPEHGSYMNSNSQFIKPLETQKMNKPHVCTECGKAFVKKSRLIDHQRVHTGEKPHGCSVCGKAFSRKSRLSEHQKTHIGEKWYACTECDKAFPKKSRLLLHQKTHTGEKPYVCDECGKGFIKKSRLINHQRVHTGEKPHGCSLCDKAFSRKSRLIEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKTHTGEKSYVCSECGKGFIQKGNLIVHQRTHTGEKPYVCSECGKGFIQKGNLLIHQRTHTGEKPYVCTECGKGFSQKTCLISHQRFHTGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYRCNDCGKAFRDKSCLNRHRRTHTGERPYGCTDCGKAFSHLSCLVYHKGMLHTREKRGGSVKLENPFSKSPSSSQSRDIIQERNSISMVTIQTPSVAAQTPLDFIGFLADKNGALVGQPGARCAPSAGNRSCTEEKPNECGGTFSDQLHHTLCHRNHTGINCDMVKVENP", "length": 646, "header": "tr|A0A286ZLB7-1|A0A286ZLB7_PIG Computationally mapped isoform of Zinc finger protein 613 OS=Sus scrofa OX=9823 GN=ZNF613 PE=3 SV=3 CANONICAL=A0A4X1VSR6-1" }, "locus": { "chromosome": "6", "start_pos": 58175346, "end_pos": 58166663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056801.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056801.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032348.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032348.3" } ] } }, { "isoform_ac": "A0A4X1VSR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6/entry", "sequence": { "sequence": "MTKDQGSLTLEDVAVDFTWEEWQLLTPDQKDLYRDVTLENHRNLVAVGYQALKPDALSRLERGELWPEEDEILGQICPEMRKDNCHLQKDLKNQRCPKRMEQCLKHNTLGNIVHQSKRNFPLKQNHNIFDLRGKALKLNLVSQSRSYKGKNPVEVNGDTKSFLHAKREQFHVEIKFPEHGSYMNSNSQFIKPLETQKMNKPHVCTECGKAFVKKSRLIDHQRVHTGEKPHGCSVCGKAFSRKSRLSEHQKTHIGEKWYACTECDKAFPKKSRLLLHQKTHTGEKPYVCDECGKGFIKKSRLINHQRVHTGEKPHGCSLCDKAFSRKSRLIEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKTHTGEKSYVCSECGKGFIQKGNLIVHQRTHTGEKPYVCSECGKGFIQKGNLLIHQRTHTGEKPYVCTECGKGFSQKTCLISHQRFHTGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYRCNDCGKAFRDKSCLNRHRRTHTGERPYGCTDCGKAFSHLSCLVYHKGMLHTREKRGGSVKLENPFSKSPSSSQSRDIIQERNSISMVTIQTPSVAAQTPLDFIGFLADKNGALVGQPGARCAPSAGNRSCTEEKPNECGGTFSDQLHHTLCHRNHTGINCDMVKVENP", "length": 651, "header": "tr|A0A4X1VSR6-1|A0A4X1VSR6_PIG Isoform 1 of Zinc finger protein 613 OS=Sus scrofa OX=9823 GN=ZNF613 PE=3 SV=1 CANONICAL=A0A4X1VSR6-1" }, "locus": { "chromosome": "6", "start_pos": 58178689, "end_pos": 58166663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064778.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064778.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037549.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037549.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q6PF04-1", "protein_name": "Zinc finger protein 613", "gene_name": "ZNF613", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIKSQESLTLEDVAVEFTWEEWQLLGPAQKDLYRDVMLENYSNLVSVGYQASKPDALFKLEQGEPWTVENEIHSQICPEIKKVDNHLQMHSQKQRCLKRVEQCHKHNAFGNIIHQRKSDFPLRQNHDTFDLHGKILKSNLSLVNQNKRYEIKNSVGVNGDGKSFLHAKHEQFHNEMNFPEGGNSVNTNSQFIKHQRTQNIDKPHVCTECGKAFLKKSRLIYHQRVHTGEKPHGCSICGKAFSRKSGLTEHQRNHTGEKPYECTECDKAFRWKSQLNAHQKIHTGEKSYICSDCGKGFIKKSRLINHQRVHTGEKPHGCSLCGKAFSKRSRLTEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKAHTGEKSYICRDCGKGFIQKGNLIVHQRIHTGEKPYICNECGKGFIQKGNLLIHRRTHTGEKPYVCNECGKGFSQKTCLISHQRFHTGKTPFVCTECGKSCSHKSGLINHQRIHTGEKPYTCSDCGKAFRDKSCLNRHRRTHTGERPYGCSDCGKAFSHLSCLVYHKGMLHAREKCVGSVKLENPCSESHSLSHTRDLIQDKDSVNMVTLQMPSVAAQTSLTNSAFQAESKVAIVSQPVARSSVSADSRICTE", "length": 617 }, "evidence": [ { "id": "A0A4X1VSR6", "url": "https://omabrowser.org/oma/group/A0A4X1VSR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSR6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 637, "end_pos": 639, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VSR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 229, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VSR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSR6" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 78, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 610, "end_pos": 612 }, { "start_pos": 637, "end_pos": 639 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VT10-1", "uniprot_ac": "A0A4X1VT10", "uniprot_id": "A0A4X1VT10_PIG", "mass": { "chemical_mass": 49071.0, "monoisotopic_mass": 49071.0 }, "refseq": { "ac": "XP_005660289", "name": "protein FAM221B isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660289" }, "gene_names": [ { "name": "FAM221B", "type": "recommended", "evidence": [ { "id": "A0A4X1VT10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10" } ] }, { "name": "FAM221B", "type": "synonym", "evidence": [ { "id": "XP_005660289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660289" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 221 member B", "type": "synonym", "evidence": [ { "id": "A0A4X1VT10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10/entry#names_and_taxonomy" } ] }, { "name": "protein FAM221B isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005660289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660289" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM221B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10", "locus": { "chromosome": "1", "start_pos": 236539262, "end_pos": 236547959, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005324", "url": "https://www.ensembl.org/id/ENSSSCG00000005324" } ] } } ], "crossref": [ { "id": "A0A4X1VT10", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VT10", "database": "AlphaFoldDB", "categories": [] }, { "id": "100517694", "url": "https://www.ncbi.nlm.nih.gov/gene/100517694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517694", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSCFESN", "url": "https://omabrowser.org/oma/group/CSCFESN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VT10", "url": "https://www.orthodb.org/?gene=A0A4X1VT10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31214:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31214:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660289", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VT10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VT10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEADKGTEEPHVTTEDAEEHPSSKDPSAEDSQEPPIPEIPLEPLASKSHIVPSTSQIPLETHTSETPLEPSIPGTPLALSASEVPLETPISKVPEKDLTFHTSARSPVPGSSSNDLKKDLLSHSPSSEDTSESEGLQKHPLSGPPAQVHLDTSAKEREEEEESKKGVNATDRTTHKAQHEHQRGKKKRKKGVSRYAVHPVVPAQQAEPGEAVKAVHREKCGAQVNYLFQWEKDAALNAIQTGLYIGWRCPHYLWDCFRIGEESKCFCGHLLREHQIISDISVPCSVGQCRCLVFCFIPSRPEEVGEFWLKRRATFDPRAWRAQCRCKHSHEDHAATGSHSCRVRGCCCSCFESNFLCAACDRRWEEHETFFETEETRRRGGRPHGADHTPFAEMSTLREAISNNSDSEAPQKQAPSDHPHSYPNPPGLPPTVRPGPMSGPRT", "length": 442, "header": "tr|A0A4X1VT10-1|A0A4X1VT10_PIG Isoform 1 of Family with sequence similarity 221 member B OS=Sus scrofa OX=9823 GN=FAM221B PE=3 SV=1 CANONICAL=A0A4X1VT10-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VT10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10/entry", "sequence": { "sequence": "MEADKGTEEPHVTTEDAEEHPSSKDPSAEDSQEPPIPEIPLEPLASKSHIVPSTSQIPLETHTSETPLEPSIPGTPLALSASEVPLETPISKVPEKDLTFHTSARSPVPGSSSNDLKKDLLSHSPSSEDTSESEGLQKHPLSGPPAQVHLDTSAKEREEEEESKKGVNATDRTTHKAQHEHQRGKKKRKKGVSRYAVHPVVPAQQAEPGEAVKAVHREKCGAQVNYLFQWEKDAALNAIQTGLYIGWRCPHYLWDCFRIGEESKCFCGHLLREHQIISDISVPCSVGQCRCLVFCFIPSRPEEVGEFWLKRRATFDPRAWRAQCRCKHSHEDHAATGSHSCRVRGCCCSCFESNFLCAACDRRWEEHETFFETEETRRRGGRPHGADHTPFAEMSTLREAISNNSDSEAPQKQAPSDHPHSYPNPPGLPPTVRPGPMSGPRT", "length": 442, "header": "tr|A0A4X1VT10-1|A0A4X1VT10_PIG Isoform 1 of Family with sequence similarity 221 member B OS=Sus scrofa OX=9823 GN=FAM221B PE=3 SV=1 CANONICAL=A0A4X1VT10-1" }, "locus": { "chromosome": "1", "start_pos": 236547959, "end_pos": 236539351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005863.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005863.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005718.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005718.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517694", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6H8Z2-1", "protein_name": "Protein FAM221B", "gene_name": "FAM221B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAHEIIEEPHITMDAEKHPPSKDPSAEDLQENHISESFLKPSTSETPLEPHTSESPLVPSPSQIPLEAHSPETHQEPSISETPSETPTYEASLDSPISVVPEKHLTLPPQSRDYVCLSSSDTLKEDLSSESSSNEVPWTRRSTHLSESESLPEHCLSGPSSQVQVDTTEKQEEEAGEVEKGVDASDSTAHTAQPGHQLGNTARPVFPARQTELVEVAKAMHREEFGAQVNNLFQWEKDAALNAIQTGLYIGWRCPHYLWDCFRIGDESRCFCGHLLREHRIISDISVPCKVSQCRCFMFCFIPSRPEEVGEFWLKRRATFDPKAWRAQCRCKHSHEEHAATGPHPCRHHGCCCGCFESNFLCAACDRRWEEHETFFDTQKTRQRGGRPRGTDTVSNWHRPL", "length": 402 }, "evidence": [ { "id": "A0A4X1VT10", "url": "https://omabrowser.org/oma/group/A0A4X1VT10/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q66HD8-1", "protein_name": "Protein FAM221B", "gene_name": "Fam221b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEADKTSEGPPATQDAKKHPSLTVPHAEDLPEATTPESPPHLLSSQEYFQPPKVHSKTYPSLDLGTKDSEDLQDPSVSETPLKLDTANLPSTPSQSSAQSVISLERAISKIPLDDFIYENSISEVQEEPLPLSPTTDISKYEYPISDVQEEPLLLSPTTNISKYEDSISDVQEEPLEDTPTADISETEYSISDVQEEPLEPPPTADIPESEDYISDDHEEPLEPPPTADIPESSYEFISDKVPQTQVPESEPFPKHSVPEPSAQAKEAASADEEEAEEEELTGGTSKTAAAGSEHHARKKKEKRGCESRPVVPAKRAELVEMAKAMHRKQFDDQVNDLFQWEKNSSLKAIQTGIYIGWRCPHYLWDCFRIGDESKCFCGHLLKEHQIISDLSVPCSVSQCRCLMFCFIPSRPEEVGEFWLKKRATFDPKAWRAQCRCKHTHEEHAATGSHPCRHRGCYCNSFESNFLCAACDRRWEEHETFFETEETKRRGKRPYGTNTAKNRHRPF", "length": 507 }, "evidence": [ { "id": "A0A4X1VT10", "url": "https://omabrowser.org/oma/group/A0A4X1VT10/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C627-1", "protein_name": "Protein FAM221B", "gene_name": "Fam221b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEANKTTEGPQDTQDAKEQPSLEDTNAEDLYEATTHETPLQPSSSQKHFQPPEIHLETPASLNPDTKGAEGLQDSSVSGTPPVKSSSSGLLSLPPQLSPQSVTSLEKAIAEIPLEEFGYDSPISKVKEEPLQLSPTANIPEYGSPISEVQKESLEVSPTANIPEYGSPISEVQKEPLEVSSTANIPKYESPVSEVQKEPLEVSPTASIPESSHELTSDKVPQTQVPESEHFPKHSFSESPTQAKEDESTKEGEAGEDELAVGTSKIPAAKPGLRAKKKKEKRAGGVTSRPVVPAKRAELVEMAKAVHREQFDDQVNNLFQWEKDSTLKAIQTGIYIGWRCPHYLWDCFRIGDESKCFCGHLLREHQIISDLSVPCSVSQCRCLMFCFIPSRPEEVGEFWLKKRATFDPKAWRAQCRCKHTHEEHAATGAHPCRHRGCFCPSFESNFLCVACDRRWEEHETFFETGDTRRKGKRPYGANNIKNWHRTY", "length": 487 }, "evidence": [ { "id": "A0A4X1VT10", "url": "https://omabrowser.org/oma/group/A0A4X1VT10/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 403, "end_pos": 405 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VT12-1", "uniprot_ac": "A0A4X1VT12", "uniprot_id": "A0A4X1VT12_PIG", "mass": { "chemical_mass": 12543.0, "monoisotopic_mass": 12543.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein eL33", "type": "recommended", "evidence": [ { "id": "A0A4X1VT12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L35a", "type": "synonym", "evidence": [ { "id": "A0A4X1VT12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Required for the proliferation and viability of hematopoietic cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12#function" }, { "database": "UniProtKB", "id": "ARBA00045649", "url": "https://www.uniprot.org/uniprotkb/ARBA00045649#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12", "locus": {} } ], "crossref": [ { "id": "A0A4X1VT12", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VT12", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RNDTHYR", "url": "https://omabrowser.org/oma/group/RNDTHYR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01247", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01247", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VT12-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRFWSKAIFAGYKRGLWNQREHTALLKIEGLYARDETEFYLGKRCVHVYKAKNNTVSPGRKPNKTRVIWGKATHAHSNSGRVHAKFQSNLSTKATGHRILTMLYPSRI", "length": 109, "header": "tr|A0A4X1VT12-1|A0A4X1VT12_PIG Isoform 1 of Large ribosomal subunit protein eL33 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VT12-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VT12-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12/entry", "sequence": { "sequence": "MGRFWSKAIFAGYKRGLWNQREHTALLKIEGLYARDETEFYLGKRCVHVYKAKNNTVSPGRKPNKTRVIWGKATHAHSNSGRVHAKFQSNLSTKATGHRILTMLYPSRI", "length": 109, "header": "tr|A0A4X1VT12-1|A0A4X1VT12_PIG Isoform 1 of Large ribosomal subunit protein eL33 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1VT12-1" }, "locus": { "chromosome": "3", "start_pos": 44562222, "end_pos": 44561707, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006639.2", "url": "https://www.ensembl.org/id/ENSSSCT00000006639.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023906.2", "url": "https://www.ensembl.org/id/ENSSSCP00000023906.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ribosomal large subunit biogenesis", "id": "GO:0042273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042273", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "pmid": "" }, { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 54, "end_pos": 56 }, { "start_pos": 64, "end_pos": 66 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VT88-1", "uniprot_ac": "A0A4X1VT88", "uniprot_id": "A0A4X1VT88_PIG", "mass": { "chemical_mass": 16170.0, "monoisotopic_mass": 16170.0 }, "refseq": {}, "gene_names": [ { "name": "SMIM44", "type": "recommended", "evidence": [ { "id": "A0A4X1VT88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 44", "type": "synonym", "evidence": [ { "id": "A0A4X1VT88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT88", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88", "locus": { "chromosome": "2", "start_pos": 75177415, "end_pos": 75176818, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049629", "url": "https://www.ensembl.org/id/ENSSSCG00000049629" } ] } } ], "crossref": [ { "id": "A0A4X1VT88", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VT88", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VT88", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VT88-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGRAVEEGMEGWSPAPPLYEEYRPPPLDTIRLPRYVLYLLLAALLVVAVAYAIVGHLIKDLAHDLADWLFGPKPDQEDAPRELPESPEGEDLEELDLQLALAWRGDEDATCGGGEGAPAEAPARMPRRPSITFKDPPSRSSFWRL", "length": 146, "header": "tr|A0A4X1VT88-1|A0A4X1VT88_PIG Isoform 1 of Small integral membrane protein 44 OS=Sus scrofa OX=9823 GN=SMIM44 PE=4 SV=1 CANONICAL=A0A4X1VT88-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VT88-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88/entry", "sequence": { "sequence": "MPGRAVEEGMEGWSPAPPLYEEYRPPPLDTIRLPRYVLYLLLAALLVVAVAYAIVGHLIKDLAHDLADWLFGPKPDQEDAPRELPESPEGEDLEELDLQLALAWRGDEDATCGGGEGAPAEAPARMPRRPSITFKDPPSRSSFWRL", "length": 146, "header": "tr|A0A4X1VT88-1|A0A4X1VT88_PIG Isoform 1 of Small integral membrane protein 44 OS=Sus scrofa OX=9823 GN=SMIM44 PE=4 SV=1 CANONICAL=A0A4X1VT88-1" }, "locus": { "chromosome": "2", "start_pos": 75177415, "end_pos": 75176818, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084982.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084982.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067014.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067014.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VT88", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VT88" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VTF6-1", "uniprot_ac": "A0A4X1VTF6", "uniprot_id": "A0A4X1VTF6_PIG", "mass": { "chemical_mass": 12738.0, "monoisotopic_mass": 12738.0 }, "refseq": {}, "gene_names": [ { "name": "C19orf25", "type": "recommended", "evidence": [ { "id": "A0A4X1VTF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6" } ] } ], "protein_names": [ { "name": "Chromosome 2 C19orf25 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1VTF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C19orf25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6", "locus": { "chromosome": "2", "start_pos": 77003326, "end_pos": 76998982, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022265", "url": "https://www.ensembl.org/id/ENSSSCG00000022265" } ] } } ], "crossref": [ { "id": "IPR028227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625377", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625377", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RFQQCRR", "url": "https://omabrowser.org/oma/group/RFQQCRR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VTF6", "url": "https://www.orthodb.org/?gene=A0A4X1VTF6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34766", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34766", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34766:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34766:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15136", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15136", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VTF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VTF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSKTKKRVVLPTRPAPPTVEQILEDVRGAPAEDPVFTALAPEDSPGPSWRAEDAEAQREQLYQQSRDYVATNQRLRQAGAQLKQKCEGLRQAGEDLELDVSQVGQVALPGAVVASSG", "length": 118, "header": "tr|A0A4X1VTF6-1|A0A4X1VTF6_PIG Isoform 1 of Chromosome 2 C19orf25 homolog OS=Sus scrofa OX=9823 GN=C19orf25 PE=3 SV=1 CANONICAL=A0A4X1VTF6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VTF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6/entry", "sequence": { "sequence": "MSSKTKKRVVLPTRPAPPTVEQILEDVRGAPAEDPVFTALAPEDSPGPSWRAEDAEAQREQLYQQSRDYVATNQRLRQAGAQLKQKCEGLRQAGEDLELDVSQVGQVALPGAVVASSG", "length": 118, "header": "tr|A0A4X1VTF6-1|A0A4X1VTF6_PIG Isoform 1 of Chromosome 2 C19orf25 homolog OS=Sus scrofa OX=9823 GN=C19orf25 PE=3 SV=1 CANONICAL=A0A4X1VTF6-1" }, "locus": { "chromosome": "2", "start_pos": 77001831, "end_pos": 76999237, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074203.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074203.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065462.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065462.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTF6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTF6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625377", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625377", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HF79-1", "protein_name": "UPF0449 protein C19orf25 homolog", "gene_name": "CUNH19orf25", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSRGKKRVVLPTRPAPPTVEQILEDVREAPAHDPVFTALAPEDPPDPSLRAEDLEAQHEQIYQQSRAYVAMNERLQQAKDTLRQKFENLRQAGQRLEQDVSQVTSATS", "length": 109 }, "evidence": [ { "id": "A0A4X1VTF6", "url": "https://omabrowser.org/oma/group/A0A4X1VTF6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1LZF3-1", "protein_name": "UPF0449 protein C19orf25 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSKAKKRVVLPTRPAPPTVEQILEDVRGAPAEDPVFTALAREDPLGPSGRTEDAEAQREQLYFQSRIYVAMNQRLQQAGAQLEQKRADLQQAGEELERDISQVGHVALPSTAAASLG", "length": 118 }, "evidence": [ { "id": "A0A4X1VTF6", "url": "https://omabrowser.org/oma/group/A0A4X1VTF6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D7E4-1", "protein_name": "UPF0449 protein C19orf25 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSKAKKRVVLPTRPAPPTVEQILEDVRGAPAQDPVFTALAPEDPPDPSPRAEDSEIQQEQIYQQSRAYVAMNERLRQAGEALRQKFDGLRQAGQRLEQDISQVTSATS", "length": 109 }, "evidence": [ { "id": "A0A4X1VTF6", "url": "https://omabrowser.org/oma/group/A0A4X1VTF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UFG5-1", "protein_name": "UPF0449 protein C19orf25", "gene_name": "C19orf25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSKAKKRVLLPTRPAPPTVEQILEDVRGAPAEDPVFTILAPEDPPVPFRMMEDAEAPGEQLYQQSRAYVAANQRLQQAGNVLRQRCELLQRAGEDLEREVAQMKQAALPAAEAASSG", "length": 118 }, "evidence": [ { "id": "A0A4X1VTF6", "url": "https://omabrowser.org/oma/group/A0A4X1VTF6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VTT1-1", "uniprot_ac": "A0A4X1VTT1", "uniprot_id": "A0A4X1VTT1_PIG", "mass": { "chemical_mass": 12712.0, "monoisotopic_mass": 12712.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VTT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1", "locus": {} } ], "crossref": [ { "id": "A0A4X1VTT1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VTT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "FSAVIMY", "url": "https://omabrowser.org/oma/group/FSAVIMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VTT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VTT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVFVSRNLKLLLWKNFLLKKGKMLVTVLEILMSLLFSAVIMYLRFRSLPRNRPPFDYTAIDITSLPEFLYLFPLKARFQLVYVPSNIETLKNITEMVEKTFDVECEG", "length": 108, "header": "tr|A0A4X1VTT1-1|A0A4X1VTT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VTT1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VTT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1/entry", "sequence": { "sequence": "MTVFVSRNLKLLLWKNFLLKKGKMLVTVLEILMSLLFSAVIMYLRFRSLPRNRPPFDYTAIDITSLPEFLYLFPLKARFQLVYVPSNIETLKNITEMVEKTFDVECEG", "length": 108, "header": "tr|A0A4X1VTT1-1|A0A4X1VTT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VTT1-1" }, "locus": { "chromosome": "3", "start_pos": 39667494, "end_pos": 39666443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008824.3", "url": "https://www.ensembl.org/id/ENSSSCT00000008824.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008600.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008600.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VYD8-1", "uniprot_ac": "A0A4X1VYD8", "uniprot_id": "A0A4X1VYD8_PIG", "mass": { "chemical_mass": 16698.0, "monoisotopic_mass": 16698.0 }, "refseq": {}, "gene_names": [ { "name": "PTP4A2", "type": "recommended", "evidence": [ { "id": "A0A4X1VYD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ] } ], "protein_names": [ { "name": "Protein tyrosine phosphatase 4A2", "type": "synonym", "evidence": [ { "id": "A0A4X1VYD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTP4A2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8", "locus": { "chromosome": "6", "start_pos": 88419453, "end_pos": 88447832, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039885", "url": "https://www.ensembl.org/id/ENSSSCG00000039885" } ] } } ], "crossref": [ { "id": "A0A4X1VYD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VYD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039885", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039885", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22784", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22784", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22785", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22785", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VTT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VTT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0R2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0R2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0R2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0USG5", "url": "https://www.uniprot.org/uniprotkb/A0A8D0USG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0USG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0USG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "FAIMNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ", "length": 145, "header": "tr|A0A4X1VYD8-1|A0A4X1VYD8_PIG Isoform 1 of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VTT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT2/entry", "sequence": { "sequence": "MNRPAPVEISYENMRFLITHNPTNATLNKFTEDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ", "length": 136, "header": "tr|A0A4X1VTT2-1|A0A4X1VYD8_PIG Computationally mapped isoform of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "locus": { "chromosome": "6", "start_pos": 88432282, "end_pos": 88421891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063075.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063075.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052991.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052991.1" } ] } }, { "isoform_ac": "A0A4X1VYD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8/entry", "sequence": { "sequence": "FAIMNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ", "length": 145, "header": "tr|A0A4X1VYD8-1|A0A4X1VYD8_PIG Isoform 1 of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "locus": { "chromosome": "6", "start_pos": 88432291, "end_pos": 88421891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082567.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082567.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063176.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063176.2" } ] } }, { "isoform_ac": "A0A4X1W0R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0R2/entry", "sequence": { "sequence": "MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLGTCAGCTCFD", "length": 73, "header": "tr|A0A4X1W0R2-1|A0A4X1W0R2_PIG Computationally mapped isoform of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "locus": { "chromosome": "6", "start_pos": 88432282, "end_pos": 88423272, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077767.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077767.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071410.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071410.1" } ] } }, { "isoform_ac": "A0A5G2QUP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP9/entry", "sequence": { "sequence": "MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLMHFREYY", "length": 70, "header": "tr|A0A5G2QUP9-1|A0A5G2QUP9_PIG Computationally mapped isoform of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "locus": { "chromosome": "6", "start_pos": 88432282, "end_pos": 88426740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080190.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080190.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068681.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068681.1" } ] } }, { "isoform_ac": "A0A8D0USG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0USG5/entry", "sequence": { "sequence": "IYVSSFLSSKQPLLKHELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ", "length": 151, "header": "tr|A0A8D0USG5-1|A0A8D0USG5_PIG Computationally mapped isoform of Protein tyrosine phosphatase 4A2 OS=Sus scrofa OX=9823 GN=PTP4A2 PE=1 SV=1 CANONICAL=A0A4X1VYD8-1" }, "locus": { "chromosome": "6", "start_pos": 88429762, "end_pos": 88421891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049395.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049395.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046443.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046443.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VTT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VTT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" }, { "name": "enzyme inhibitor activity", "id": "GO:0004857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004857", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VYD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYD8" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 110, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VV01-1", "uniprot_ac": "A0A4X1VV01", "uniprot_id": "A0A4X1VV01_PIG", "mass": { "chemical_mass": 13255.0, "monoisotopic_mass": 13255.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM242", "type": "recommended", "evidence": [ { "id": "A0A4X1VV01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01" } ] } ], "protein_names": [ { "name": "Transmembrane protein 242", "type": "recommended", "evidence": [ { "id": "A0A4X1VV01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Scaffold protein that participates in the c-ring assembly of mitochondrial ATP synthase (F(1)F(0) ATP synthase or complex V) by facilitating the membrane insertion and oligomer formation of the subunit c/ATP5MC3. Participates in the incorporation of the c-ring into vestigial complexes. Additionally influences the incorporation of subunits MT-ATP6, MT-ATP8, ATP5MJ, and ATP5MK in the ATP synthase.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01#function" }, { "database": "UniProtKB", "id": "ARBA00045905", "url": "https://www.uniprot.org/uniprotkb/ARBA00045905#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM242", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01", "locus": { "chromosome": "1", "start_pos": 9671585, "end_pos": 9667904, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000060508", "url": "https://www.ensembl.org/id/ENSSSCG00000060508" } ] } } ], "crossref": [ { "id": "A0A4X1VV01", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VV01", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR009792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13141:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13141:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV01-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESQGAGTAESSSRLEAPAPTDDRLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSMATAALPESGSSLALRALGWGSLYAWCGVGVISFAIWKALGVHSVSNDTLLTGIMFVLLDEVC", "length": 128, "header": "tr|A0A4X1VV01-1|A0A4X1VV01_PIG Isoform 1 of Transmembrane protein 242 OS=Sus scrofa OX=9823 GN=TMEM242 PE=1 SV=1 CANONICAL=A0A4X1VV01-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VV01-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01/entry", "sequence": { "sequence": "MESQGAGTAESSSRLEAPAPTDDRLFLVKGGIFLGTVAAAGMLAGFVTTLSLAKKKSPEWFNKGSMATAALPESGSSLALRALGWGSLYAWCGVGVISFAIWKALGVHSVSNDTLLTGIMFVLLDEVC", "length": 128, "header": "tr|A0A4X1VV01-1|A0A4X1VV01_PIG Isoform 1 of Transmembrane protein 242 OS=Sus scrofa OX=9823 GN=TMEM242 PE=1 SV=1 CANONICAL=A0A4X1VV01-1" }, "locus": { "chromosome": "1", "start_pos": 9671585, "end_pos": 9667929, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068438.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068438.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073222.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073222.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial proton-transporting ATP synthase complex assembly", "id": "GO:0033615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV01", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VV05-1", "uniprot_ac": "A0A4X1VV05", "uniprot_id": "A0A4X1VV05_PIG", "mass": { "chemical_mass": 22377.0, "monoisotopic_mass": 22377.0 }, "refseq": { "ac": "XP_003125720", "name": "transgelin-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125720" }, "gene_names": [ { "name": "TAGLN2", "type": "recommended", "evidence": [ { "id": "A0A4X1VV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ] }, { "name": "TAGLN2", "type": "synonym", "evidence": [ { "id": "XP_003125720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125720" } ] } ], "protein_names": [ { "name": "Transgelin", "type": "recommended", "evidence": [ { "id": "A0A4X1VV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05/entry#names_and_taxonomy" } ] }, { "name": "transgelin-2", "type": "synonym", "evidence": [ { "id": "XP_003125720", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125720" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAGLN2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05", "locus": {} } ], "crossref": [ { "id": "A0A4X1VV05", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VV05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006395", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006395", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21280", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21280", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515893", "url": "https://www.ncbi.nlm.nih.gov/gene/100515893", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515893", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515893", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIKTITG", "url": "https://omabrowser.org/oma/group/WIKTITG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VV05", "url": "https://www.orthodb.org/?gene=A0A4X1VV05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47385", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47385", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47385:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47385:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125720", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AIA2", "url": "https://www.uniprot.org/uniprotkb/A0A287AIA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE37", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ93", "url": "https://www.uniprot.org/uniprotkb/F1RJ93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ93-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199, "header": "tr|A0A4X1VV05-1|A0A4X1VV05_PIG Isoform 1 of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN2 PE=1 SV=1 CANONICAL=A0A4X1VV05-1" }, "isoforms": [ { "isoform_ac": "A0A287AIA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIA2/entry", "sequence": { "sequence": "MLSTQPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGGPGPGHCHPEDQGLGWAPFPPRKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 198, "header": "tr|A0A287AIA2-1|A0A287AIA2_PIG Computationally mapped isoform of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN2 PE=1 SV=2 CANONICAL=A0A4X1VV05-1" }, "locus": { "chromosome": "4", "start_pos": 90574089, "end_pos": 90572087, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052596.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052596.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043727.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043727.3" } ] } }, { "isoform_ac": "A0A4X1VV05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05/entry", "sequence": { "sequence": "MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199, "header": "tr|A0A4X1VV05-1|A0A4X1VV05_PIG Isoform 1 of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN2 PE=1 SV=1 CANONICAL=A0A4X1VV05-1" }, "locus": { "chromosome": "4", "start_pos": 90574089, "end_pos": 90572196, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039155.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039155.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044246.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044246.1" } ] } }, { "isoform_ac": "A0A8W4FE37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE37/entry", "sequence": { "sequence": "MCLPSSTQPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGGPGPGHCHPEDQGLGWAPFPPRKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 201, "header": "tr|A0A8W4FE37-1|A0A8W4FE37_PIG Computationally mapped isoform of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN2 PE=1 SV=1 CANONICAL=A0A4X1VV05-1" }, "locus": { "chromosome": "4", "start_pos": 90574089, "end_pos": 90572154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092262.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092262.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077574.1" } ] } }, { "isoform_ac": "F1RJ93-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ93/entry", "sequence": { "sequence": "MCLPSSTQPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 213, "header": "tr|F1RJ93-1|F1RJ93_PIG Computationally mapped isoform of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN2 PE=1 SV=3 CANONICAL=A0A4X1VV05-1" }, "locus": { "chromosome": "4", "start_pos": 90574089, "end_pos": 90572154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007008.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007008.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006818.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006818.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515893", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515893", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H7Z2-1", "protein_name": "Transgelin", "gene_name": "Tagln2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MANRGPAYGLSREVQQKIEKQYDGDLEQILIQWITTQCRKPVDRPQPGRENFHNWLKDGTVLCELINSLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEAKNMACVQRTLMNLGGLAVARNDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P37802-1", "protein_name": "Transgelin-2", "gene_name": "TAGLN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q08873-1", "protein_name": "Transgelin", "gene_name": "SCP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSYDKKADVTSLDEDLRQLRESKFSPEAIQNIKIWVYKSVLKEIAPPGDLLECLKDGTVLCKLANILYEADTGEANHISWKSSKMPFVQMDQISQFLSFSRKYGVPEDELFQTIDLFEKKDPAIVFQTLKSLSRYANKKHTDRFPVLGPQLSTKKPRPPVKSKPKHLQDGTGWSTFEYGYMKGASQATEGVVLGQRRDIV", "length": 200 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5E9F5-1", "protein_name": "Transgelin-2", "gene_name": "TAGLN2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5XFX0-1", "protein_name": "Transgelin-2", "gene_name": "Tagln2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRGPSYGLSREVQQKIEKQYDPDLEQILIQWITTQCRKGVSQPQPGRENFQNWLKDGTVLCELINSLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VZI1-1", "protein_name": "Transgelin", "gene_name": "Chd64", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTDNFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNFGVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNVRNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM", "length": 188 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9WVA4-1", "protein_name": "Transgelin-2", "gene_name": "Tagln2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGTVLCKLINSLYPEGQAPVKKIQASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL", "length": 199 }, "evidence": [ { "id": "A0A4X1VV05", "url": "https://omabrowser.org/oma/group/A0A4X1VV05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VV05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV05" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 136, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VV20-1", "uniprot_ac": "A0A4X1VV20", "uniprot_id": "A0A4X1VV20_PIG", "mass": { "chemical_mass": 11378.0, "monoisotopic_mass": 11378.0 }, "refseq": { "ac": "XP_005671873", "name": "small integral membrane protein 18", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671873" }, "gene_names": [ { "name": "SMIM18", "type": "recommended", "evidence": [ { "id": "A0A4X1VV20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20" } ] }, { "name": "SMIM18", "type": "synonym", "evidence": [ { "id": "XP_005671873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671873" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 18", "type": "synonym", "evidence": [ { "id": "A0A4X1VV20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 18", "type": "synonym", "evidence": [ { "id": "XP_005671873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671873" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20", "locus": { "chromosome": "15", "start_pos": 54455885, "end_pos": 54464338, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033236", "url": "https://www.ensembl.org/id/ENSSSCG00000033236" } ] } } ], "crossref": [ { "id": "A0A4X1VV20", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VV20", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20255", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20255", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102167879", "url": "https://www.ncbi.nlm.nih.gov/gene/102167879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102167879", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167879", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IYQYLGF", "url": "https://omabrowser.org/oma/group/IYQYLGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VV20", "url": "https://www.orthodb.org/?gene=A0A4X1VV20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36982", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36982", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36982:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36982:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671873", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VV20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLNSSLWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEVLDCCCCVKNKTVKDLKSEPNPLRSMMDNIRKRETEVV", "length": 98, "header": "tr|A0A4X1VV20-1|A0A4X1VV20_PIG Isoform 1 of Small integral membrane protein 18 OS=Sus scrofa OX=9823 GN=SMIM18 PE=4 SV=1 CANONICAL=A0A4X1VV20-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VV20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20/entry", "sequence": { "sequence": "MASLNSSLWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEVLDCCCCVKNKTVKDLKSEPNPLRSMMDNIRKRETEVV", "length": 98, "header": "tr|A0A4X1VV20-1|A0A4X1VV20_PIG Isoform 1 of Small integral membrane protein 18 OS=Sus scrofa OX=9823 GN=SMIM18 PE=4 SV=1 CANONICAL=A0A4X1VV20-1" }, "locus": { "chromosome": "15", "start_pos": 54456374, "end_pos": 54456081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056316.1", "url": "https://www.ensembl.org/id/ENSSSCT00000056316.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051943.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051943.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102167879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167879", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MAT1-1", "protein_name": "Small integral membrane protein 18", "gene_name": "SMIM18", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASLSSSLWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEVLDCCCCVKNKTVKDLKNEPNPIRSMMDNIRKRETEVV", "length": 98 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2LPZ2-1", "protein_name": "Small integral membrane protein 18", "gene_name": "Smim18", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAASHWNETTTSVYQYLGFQVQTIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEALDCCCCAKNKTVKDLKSEPNPLRSMMDNIRKRDSEVV", "length": 95 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XRE9-1", "protein_name": "Small integral membrane protein 18", "gene_name": "SMIM18", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATLNATHWNETTSIYQYLGFQVQKIYPFHDNWNTACFVILIIFIFTVVSLVVLAFLYEMLDCCCCVKNKTVKDLENEPNPARAMLNSFRKRETEVV", "length": 97 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "J3QNP2-1", "protein_name": "Small integral membrane protein 18", "gene_name": "Smim18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASGRWNETTTSVYLGFQVQQIHPFHDNWNTACFVILLLFIMTVVSLVVLAFLYEVLDCCCCAKNKTVKDLKSEPNPLRSMMDNIRKRDSEVV", "length": 93 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R8L5-1", "protein_name": "Small integral membrane protein 18", "gene_name": "Smim18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSHWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEVLDCCCCAKNKTVKDLKSEPNPLRSMMDNIRKRDSEVV", "length": 95 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0DKX4-1", "protein_name": "Small integral membrane protein 18", "gene_name": "SMIM18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSHWNETTTSVYQYLGFQVQKIYPFHDNWNTACFVILLLFIFTVVSLVVLAFLYEVLDCCCCVKNKTVKDLKSEPNPLRSMMDNIRKRETEVV", "length": 95 }, "evidence": [ { "id": "A0A4X1VV20", "url": "https://omabrowser.org/oma/group/A0A4X1VV20/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VV32-1", "uniprot_ac": "A0A4X1VV32", "uniprot_id": "A0A4X1VV32_PIG", "mass": { "chemical_mass": 10803.0, "monoisotopic_mass": 10803.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VV32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32", "locus": {} } ], "crossref": [ { "id": "A0A4X1VV32", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VV32", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VV32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV32-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALFKLKIFNNKFQFYILHILPFKLTELISLDTFRVSGSCHISTKANLGKTITTVCSFNKPTRISNTNAAVNSKNTFSKCFSPTRLINSIFKMFT", "length": 95, "header": "tr|A0A4X1VV32-1|A0A4X1VV32_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VV32-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VV32-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32/entry", "sequence": { "sequence": "MALFKLKIFNNKFQFYILHILPFKLTELISLDTFRVSGSCHISTKANLGKTITTVCSFNKPTRISNTNAAVNSKNTFSKCFSPTRLINSIFKMFT", "length": 95, "header": "tr|A0A4X1VV32-1|A0A4X1VV32_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VV32-1" }, "locus": { "chromosome": "2", "start_pos": 78132586, "end_pos": 78132079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071277.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071277.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067244.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067244.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VVJ1-1", "uniprot_ac": "A0A4X1VVJ1", "uniprot_id": "A0A4X1VVJ1_PIG", "mass": { "chemical_mass": 60551.0, "monoisotopic_mass": 60551.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF454", "type": "recommended", "evidence": [ { "id": "A0A4X1VVJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ] } ], "protein_names": [ { "name": "Zinc finger protein 454", "type": "synonym", "evidence": [ { "id": "A0A4X1VVJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF454", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1", "locus": { "chromosome": "2", "start_pos": 79491658, "end_pos": 79515821, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027351", "url": "https://www.ensembl.org/id/ENSSSCG00000027351" } ] } } ], "crossref": [ { "id": "A0A4X1VVJ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VVJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027351", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027351", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620238", "url": "https://www.ncbi.nlm.nih.gov/gene/100620238", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620238", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620238", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CDESGKH", "url": "https://omabrowser.org/oma/group/CDESGKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VVJ1", "url": "https://www.orthodb.org/?gene=A0A4X1VVJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VVJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY1", "url": "https://www.uniprot.org/uniprotkb/I3LEY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY1-1", "url": "https://www.uniprot.org/uniprotkb/I3LEY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRCLPTMVQESVTFKDVAVLFTQDEWAQLSPAQRALYRDVMLENYSHLVSLGLLGPKPDMFSQLGKGEEWMLEDSLGGFCLDWMTMPVSKKSTLKASIPEGELGQQAIMERFTRDSHWKFDSLWKWQHEGQELKLQQVVLPHQKTSSGTSGQEYDESGKHCTMGSTFIQNQGSQSSKKAFVCSECGKVFTKSSALNKHQKTHTEKLNANQKTLIKEKRYECRECGKAFHQSTHLIHHQRIHTGEKPYECKECGKAFSVSSSLTYHQKIHTGEKPFECKLCGKAFIRNIHLAHHHRIHTGEKPFQCNICDKAFVCRAHLTKHQNIHSGEKPYKCNECGKAFNQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYKCSECGKAFRDNSSFARHRKIHTGEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKICEKAFIRSTHLTQHQRIHTGEKPYKCNKCGKAFNQTANLIQHQRHHIGEK", "length": 527, "header": "tr|A0A4X1VVJ1-1|A0A4X1VVJ1_PIG Isoform 1 of Zinc finger protein 454 OS=Sus scrofa OX=9823 GN=ZNF454 PE=3 SV=1 CANONICAL=A0A4X1VVJ1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VVJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1/entry", "sequence": { "sequence": "MAVRCLPTMVQESVTFKDVAVLFTQDEWAQLSPAQRALYRDVMLENYSHLVSLGLLGPKPDMFSQLGKGEEWMLEDSLGGFCLDWMTMPVSKKSTLKASIPEGELGQQAIMERFTRDSHWKFDSLWKWQHEGQELKLQQVVLPHQKTSSGTSGQEYDESGKHCTMGSTFIQNQGSQSSKKAFVCSECGKVFTKSSALNKHQKTHTEKLNANQKTLIKEKRYECRECGKAFHQSTHLIHHQRIHTGEKPYECKECGKAFSVSSSLTYHQKIHTGEKPFECKLCGKAFIRNIHLAHHHRIHTGEKPFQCNICDKAFVCRAHLTKHQNIHSGEKPYKCNECGKAFNQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYKCSECGKAFRDNSSFARHRKIHTGEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKICEKAFIRSTHLTQHQRIHTGEKPYKCNKCGKAFNQTANLIQHQRHHIGEK", "length": 527, "header": "tr|A0A4X1VVJ1-1|A0A4X1VVJ1_PIG Isoform 1 of Zinc finger protein 454 OS=Sus scrofa OX=9823 GN=ZNF454 PE=3 SV=1 CANONICAL=A0A4X1VVJ1-1" }, "locus": { "chromosome": "2", "start_pos": 79510818, "end_pos": 79493893, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051858.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051858.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050518.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050518.3" } ] } }, { "isoform_ac": "I3LEY1-1", "url": "https://www.uniprot.org/uniprotkb/I3LEY1/entry", "sequence": { "sequence": "MAVRCLPTMVQESVTFKDVAVLFTQDEWAQLSPAQRALYRDVMLENYSHLVSLGPKPDMFSQLGKGEEWMLEDSLGGFCLDWMTMPVSKKSTLKASIPEGELGQQAIMERFTRDSHWKFDSLWKWQHEGQELKLQQVVLPHQKTSSGTSGQEYDESGKHCTMGSTFIQNQGSQSSKKAFVCSECGKVFTKSSALNKHQKTHTEKLNANQKTLIKEKRYECRECGKAFHQSTHLIHHQRIHTGEKPYECKECGKAFSVSSSLTYHQKIHTGEKPFECKLCGKAFIRNIHLAHHHRIHTGEKPFQCNICDKAFVCRAHLTKHQNIHSGEKPYKCNECGKAFNQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYKCSECGKAFRDNSSFARHRKIHTGEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKICEKAFIRSTHLTQHQRIHTGEKPYKCNKCGKAFNQTANLIQHQRHHIGEK", "length": 524, "header": "tr|I3LEY1-1|I3LEY1_PIG Computationally mapped isoform of Zinc finger protein 454 OS=Sus scrofa OX=9823 GN=ZNF454 PE=3 SV=2 CANONICAL=A0A4X1VVJ1-1" }, "locus": { "chromosome": "2", "start_pos": 79510818, "end_pos": 79493893, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030072.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030072.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022620.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022620.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620238", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620238", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8N9F8-1", "protein_name": "Zinc finger protein 454", "gene_name": "ZNF454", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVSHLPTMVQESVTFKDVAILFTQEEWGQLSPAQRALYRDVMLENYSNLVSLGLLGPKPDTFSQLEKREVWMPEDTPGGFCLDWMTMPASKKSTVKAEIPEEELDQWTIKERFSSSSHWKCASLLEWQCGGQEISLQRVVLTHPNTPSQECDESGSTMSSSLHSDQSQGFQPSKNAFECSECGKVFSKSSTLNKHQKIHNEKNANQKIHIKEKRYECRECGKAFHQSTHLIHHQRIHTGEKPYECKECGKAFSVSSSLTYHQKIHTGEKPFECNLCGKAFIRNIHLAHHHRIHTGEKPFKCNICEKAFVCRAHLTKHQNIHSGEKPYKCNECGKAFNQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYKCNECGKAFRDNSSFARHRKIHTGEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKICEKAFIRSTHLTQHQRIHTGEKPYKCNKCGKAFNQTANLIQHQRHHIGEK", "length": 522 }, "evidence": [ { "id": "A0A4X1VVJ1", "url": "https://omabrowser.org/oma/group/A0A4X1VVJ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVJ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VVJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 209, "start_aa": "Phe", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VVJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVJ1" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 85, "start_aa": "Val", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 343, "end_pos": 345 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 401, "end_pos": 403 }, { "start_pos": 46, "end_pos": 48 }, { "start_pos": 511, "end_pos": 513 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VVK5-1", "uniprot_ac": "A0A4X1VVK5", "uniprot_id": "A0A4X1VVK5_PIG", "mass": { "chemical_mass": 35172.0, "monoisotopic_mass": 35172.0 }, "refseq": {}, "gene_names": [ { "name": "OR10K2", "type": "recommended", "evidence": [ { "id": "A0A4X1VVK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ] } ], "protein_names": [ { "name": "Olfactory receptor family 10 subfamily K member 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VVK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR10K2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5", "locus": { "chromosome": "4", "start_pos": 91776908, "end_pos": 91775970, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006445", "url": "https://www.ensembl.org/id/ENSSSCG00000006445" } ] } } ], "crossref": [ { "id": "A0A4X1VVK5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VVK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IFMLCTL", "url": "https://omabrowser.org/oma/group/IFMLCTL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VVK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEWVNETTVREFTFLGFSSLAGLQRLLFVVFLLVYLFTLGTNAIIISTIVLDRALHTPMYFFLGVLSCSETCYTFVIVPKMLVDLLAQKKTISFLGCAIQMFTFLFLGCSHSFLLAAMGYDRYVAICNPLRYTVLMGYGVCVGLVAAACFCGFTVAQIITSMVFHLPFHSSNQLHHFFCDISPVLKVASHPTHFNQFIIIMLCALVLVIPLFLILVSYIHIISAILQFPSTLGRYKAFSTCASHLIIVIVHYGCASFIYLRPKSHYSSSQDVLMSVSYTILTPLFNPIIYSLRNKEFKSALQRVVGRTISLLH", "length": 313, "header": "tr|A0A4X1VVK5-1|A0A4X1VVK5_PIG Isoform 1 of Olfactory receptor family 10 subfamily K member 2 OS=Sus scrofa OX=9823 GN=OR10K2 PE=3 SV=1 CANONICAL=A0A4X1VVK5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VVK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5/entry", "sequence": { "sequence": "MEWVNETTVREFTFLGFSSLAGLQRLLFVVFLLVYLFTLGTNAIIISTIVLDRALHTPMYFFLGVLSCSETCYTFVIVPKMLVDLLAQKKTISFLGCAIQMFTFLFLGCSHSFLLAAMGYDRYVAICNPLRYTVLMGYGVCVGLVAAACFCGFTVAQIITSMVFHLPFHSSNQLHHFFCDISPVLKVASHPTHFNQFIIIMLCALVLVIPLFLILVSYIHIISAILQFPSTLGRYKAFSTCASHLIIVIVHYGCASFIYLRPKSHYSSSQDVLMSVSYTILTPLFNPIIYSLRNKEFKSALQRVVGRTISLLH", "length": 313, "header": "tr|A0A4X1VVK5-1|A0A4X1VVK5_PIG Isoform 1 of Olfactory receptor family 10 subfamily K member 2 OS=Sus scrofa OX=9823 GN=OR10K2 PE=3 SV=1 CANONICAL=A0A4X1VVK5-1" }, "locus": { "chromosome": "4", "start_pos": 91776908, "end_pos": 91775970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007059.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007059.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006868.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006868.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4A8I2-1", "protein_name": "Olfactory receptor family 10 subfamily K member 2", "gene_name": "Or10k2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MECVNETVVREFVFLGFSALAELQLLLFAVFLFLYLFTLSTNAVIVSTIVLDRALHMPMYFFLSVLSCSETCYTFVIVPKMLVDLLARRKSISFLGCAIQMFAFLFLGCSHSFLLAAMGYDRHVAICHPLRYTVLMGHRVCVGLVAAASVCGFTVAQIITSLVFHLPFCSSNQLHHFFCDISPILQLASHHPHSTQITIFLLCALVLVIPLLLILVSYVHIISAILQFPSTLGRYKAFSTCASHLIVVIVHYGCASFIYLRPKSNYSSSQDALISVSYTILTPLFNPVIYSLRNKEFRSALHRVIGRTVTLRQC", "length": 314 }, "evidence": [ { "id": "A0A4X1VVK5", "url": "https://omabrowser.org/oma/group/A0A4X1VVK5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q848-1", "protein_name": "Olfactory receptor family 10 subfamily K member 2", "gene_name": "Or10k2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MECVNDTVVREFVFLGFSSLAELQLLLFAIFLSLYLFTLSTNAVIVSTIVLDRALHTPMYFFLSVLSCSETCYTFVIVPKMLVDLLARKKSISFLGCAIQMFTFLFLGCSHSFLLAAMGYDRYVAICHPLRYTVLMGHRVCVGLVAAACVCGFTVAQVITSLVFRLPFRSSNQLHHFFCDISPVLQLASHHPHSTQITIFLLCALVLVIPLFLILVSYIHIISTILQFPSTLGRYKAFSTCASHLIVVIVHYGCASFIYLRPKSSYSSSQDALISVSYTILTPLFNPVIYSLRNKDFKSALHRVIGRTVTLRQH", "length": 314 }, "evidence": [ { "id": "A0A4X1VVK5", "url": "https://omabrowser.org/oma/group/A0A4X1VVK5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MX92-1", "protein_name": "Olfactory receptor family 10 subfamily K member 2", "gene_name": "OR10K2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MECVNGSLVREFVFLGFSSLAGLQRLLFAVFLVVYLFTLGTNAIIISTVVLDRALHTPMYFFLAVLSCFETCYTFVIVPKMLVDLLAQKKAISFLGCAIQMFSFLFLGCSHSFLLAAMGYDRYVAICDPLRYTVLMGHGVCVGLVAAACTCGFTVAQIITSLVFHLPFHSSNQLHHFFCDISPVLKVASHHTHFSQIVIIMLCALVLIIPLLLILVSYICIISAILQFPSTLGRYKAFSTCASHLIIVIVHYGCASFIYLRLKSNYSSSQDALISVSYTILTPLFNPMIYSLRNKEFKSALQRVVGRTICLS", "length": 312 }, "evidence": [ { "id": "A0A4X1VVK5", "url": "https://omabrowser.org/oma/group/A0A4X1VVK5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HUG5-1", "protein_name": "Olfactory receptor 10K2", "gene_name": "LOC100750789", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MECVNKTVVKEFVFLGFSTLAELQLLLFIVFLLLYLFTLSTNAVIISTIVLDRALHTPMYFFLSVLSCSETCYTFVIVPKMLVDLLARKKSISFLGCAVQMFAFLFLGCSHSFLLAAMGYDRYVAICHPLRYTVLMGHRVCVGLVAAACVCGFTVAQIITSLVFHLPFQTSNQLRHFFCDISPVLKLACHHAHFTQITIFLLCVLVLVIPLLLILASYVHIISAILQFPSTLGRYKAFSTCASHLIVVIVHYGCASFIYLRPKSGYSSSQDALISVSYTILTPLFNPVIYSLRNKEFKSALHRVIGRTVTLRQC", "length": 314 }, "evidence": [ { "id": "A0A4X1VVK5", "url": "https://omabrowser.org/oma/group/A0A4X1VVK5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6IF99-1", "protein_name": "Olfactory receptor 10K2", "gene_name": "OR10K2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERVNETVVREVIFLGFSSLARLQQLLFVIFLLLYLFTLGTNAIIISTIVLDRALHIPMYFFLAILSCSEICYTFIIVPKMLVDLLSQKKTISFLGCAIQMFSFLFLGCSHSFLLAVMGYDRYIAICNPLRYSVLMGHGVCMGLVAAACACGFTVAQIITSLVFHLPFYSSNQLHHFFCDIAPVLKLASHHNHFSQIVIFMLCTLVLAIPLLLILVSYVHILSAILQFPSTLGRCKAFSTCVSHLIIVTVHYGCASFIYLRPQSNYSSSQDALISVSYTIITPLFNPMIYSLRNKEFKSALCKIVRRTISLL", "length": 312 }, "evidence": [ { "id": "A0A4X1VVK5", "url": "https://omabrowser.org/oma/group/A0A4X1VVK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VVK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVK5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Thr", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VVT2-1", "uniprot_ac": "A0A4X1VVT2", "uniprot_id": "A0A4X1VVT2_PIG", "mass": { "chemical_mass": 30599.0, "monoisotopic_mass": 30599.0 }, "refseq": { "ac": "XP_020950496", "name": "kallikrein-10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950496" }, "gene_names": [ { "name": "KLK10", "type": "recommended", "evidence": [ { "id": "A0A4X1VVT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ] }, { "name": "KLK10", "type": "synonym", "evidence": [ { "id": "XP_020950496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950496" } ] } ], "protein_names": [ { "name": "Kallikrein related peptidase 10", "type": "synonym", "evidence": [ { "id": "A0A4X1VVT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2/entry#names_and_taxonomy" } ] }, { "name": "kallikrein-10", "type": "synonym", "evidence": [ { "id": "XP_020950496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950496" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLK10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2", "locus": { "chromosome": "6", "start_pos": 55673439, "end_pos": 55677725, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038523", "url": "https://www.ensembl.org/id/ENSSSCG00000038523" } ] } } ], "crossref": [ { "id": "A0A4X1VVT2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VVT2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110261029", "url": "https://www.ncbi.nlm.nih.gov/gene/110261029", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261029", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261029", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNKPLWA", "url": "https://omabrowser.org/oma/group/NNKPLWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VVT2", "url": "https://www.orthodb.org/?gene=A0A4X1VVT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950496", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950496", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VVT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPRHPHLSAASGAWALERLLLPLLMAQLWVAEALLIPQNDTTSDFVASSAPCAHGSQPWQVSLFNGLSFHCAGVLVDKSWVLTAAHCGNNKPLWARVGDDHLLLLQGEQLRRTSRPIIHPKYHQGSGPILPRRTDEHDLMLLKLLRPVVLGPRVQPLRLPYHCAQPGDQCQVAGWATTASRRVKYNRGLSCSRVTILSPRECEVFYPGVLTSNMICAGLDRGQDPCQSDSGGPLVCGNTLQGTLSWGIYPCGSAQHPAVYTQICKYRSWIEKTISSN", "length": 278, "header": "tr|A0A4X1VVT2-1|A0A4X1VVT2_PIG Isoform 1 of Kallikrein related peptidase 10 OS=Sus scrofa OX=9823 GN=KLK10 PE=4 SV=1 CANONICAL=A0A4X1VVT2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VVT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2/entry", "sequence": { "sequence": "MRPRHPHLSAASGAWALERLLLPLLMAQLWVAEALLIPQNDTTSDFVASSAPCAHGSQPWQVSLFNGLSFHCAGVLVDKSWVLTAAHCGNNKPLWARVGDDHLLLLQGEQLRRTSRPIIHPKYHQGSGPILPRRTDEHDLMLLKLLRPVVLGPRVQPLRLPYHCAQPGDQCQVAGWATTASRRVKYNRGLSCSRVTILSPRECEVFYPGVLTSNMICAGLDRGQDPCQSDSGGPLVCGNTLQGTLSWGIYPCGSAQHPAVYTQICKYRSWIEKTISSN", "length": 278, "header": "tr|A0A4X1VVT2-1|A0A4X1VVT2_PIG Isoform 1 of Kallikrein related peptidase 10 OS=Sus scrofa OX=9823 GN=KLK10 PE=4 SV=1 CANONICAL=A0A4X1VVT2-1" }, "locus": { "chromosome": "6", "start_pos": 55677167, "end_pos": 55674104, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041958.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041958.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053288.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261029", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261029", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QK24-1", "protein_name": "Kallikrein-10", "gene_name": "Klk10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRAPLLYFTASGALALVKLLLPLLMVQLWGSQALLLPGNATRVDLETSTVPCTRDSQPWQVSLFHNLQFQCAGVLVDQSWVLTAAHCWRKKPLRARVGDDHLLLFQKEQLRSTNSPVFHPKYQPCSGPILPHRSDEHDLMMLKLSSPIVPTPSVHPIQLPFQCAQPGQECQVAGWGTTAARRVKYNRSLSCSRVTLLSQKQCEVFYPGVITNNMICAGLDRNQDSCQSDSGGPLVCDDTLHGILSWGIYPCGAALHPAVYTEICKYSTWIRRVIRSS", "length": 277 }, "evidence": [ { "id": "A0A4X1VVT2", "url": "https://omabrowser.org/oma/group/A0A4X1VVT2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43240-1", "protein_name": "Kallikrein-10", "gene_name": "KLK10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAPHLHLSAASGARALAKLLPLLMAQLWAAEAALLPQNDTRLDPEAYGSPCARGSQPWQVSLFNGLSFHCAGVLVDQSWVLTAAHCGNKPLWARVGDDHLLLLQGEQLRRTTRSVVHPKYHQGSGPILPRRTDEHDLMLLKLARPVVLGPRVRALQLPYRCAQPGDQCQVAGWGTTAARRVKYNKGLTCSSITILSPKECEVFYPGVVTNNMICAGLDRGQDPCQSDSGGPLVCDETLQGILSWGVYPCGSAQHPAVYTQICKYMSWINKVIRSN", "length": 276 }, "evidence": [ { "id": "A0A4X1VVT2", "url": "https://omabrowser.org/oma/group/A0A4X1VVT2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VVT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VVT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VVT2" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 276, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VW14-1", "uniprot_ac": "A0A4X1VW14", "uniprot_id": "A0A4X1VW14_PIG", "mass": { "chemical_mass": 22202.0, "monoisotopic_mass": 22202.0 }, "refseq": { "ac": "XP_005665302", "name": "hippocalcin-like protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665302" }, "gene_names": [ { "name": "HPCAL4", "type": "recommended", "evidence": [ { "id": "A0A4X1VW14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" } ] }, { "name": "HPCAL4", "type": "synonym", "evidence": [ { "id": "XP_005665302", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665302" } ] }, { "name": "HPCL4", "type": "synonym", "evidence": [ { "id": "XP_005665302", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665302" } ] } ], "protein_names": [ { "name": "Hippocalcin-like protein 4", "type": "recommended", "evidence": [ { "id": "A0A4X1VW14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14/entry#names_and_taxonomy" } ] }, { "name": "hippocalcin-like protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005665302", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665302" } ] } ], "function": [ { "annotation": "May be involved in the calcium-dependent regulation of rhodopsin phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V9", "url": "https://www.uniprot.org/uniprotkb/F2Z5V9#function" }, { "database": "UniProtKB", "id": "ARBA00003725", "url": "https://www.uniprot.org/uniprotkb/ARBA00003725#function" }, { "database": "UniProtKB", "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14#function" }, { "database": "UniProtKB", "id": "A0A5G2QUA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA6#function" }, { "database": "UniProtKB", "id": "A0A5G2R532", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R532#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HPCAL4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14", "locus": { "chromosome": "6", "start_pos": 95502684, "end_pos": 95515871, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023460", "url": "https://www.ensembl.org/id/ENSSSCG00000023460" } ] } } ], "crossref": [ { "id": "A0A4X1VW14", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VW14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023460", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023460", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100144585", "url": "https://www.ncbi.nlm.nih.gov/gene/100144585", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RAWEHQP", "url": "https://omabrowser.org/oma/group/RAWEHQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VW14", "url": "https://www.orthodb.org/?gene=A0A4X1VW14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055:SF84", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055:SF84", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005665302", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665302", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VW14-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R532", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R532", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R532-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R532-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5V9", "url": "https://www.uniprot.org/uniprotkb/F2Z5V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5V9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191, "header": "tr|A0A4X1VW14-1|A0A4X1VW14_PIG Isoform 1 of Hippocalcin-like protein 4 OS=Sus scrofa OX=9823 GN=HPCAL4 PE=1 SV=1 CANONICAL=A0A4X1VW14-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VW14-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14/entry", "sequence": { "sequence": "MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191, "header": "tr|A0A4X1VW14-1|A0A4X1VW14_PIG Isoform 1 of Hippocalcin-like protein 4 OS=Sus scrofa OX=9823 GN=HPCAL4 PE=1 SV=1 CANONICAL=A0A4X1VW14-1" }, "locus": { "chromosome": "6", "start_pos": 95509432, "end_pos": 95506525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032725.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032725.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030950.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030950.2" } ] } }, { "isoform_ac": "A0A5G2QUA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA6/entry", "sequence": { "sequence": "MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKRGGGLQPHSLAHPPLCPSPCSPQSRSLRDHLTLESRQILRYPMVQPQPQSWPTTTIYWA", "length": 235, "header": "tr|A0A5G2QUA6-1|A0A5G2QUA6_PIG Computationally mapped isoform of Hippocalcin-like protein 4 OS=Sus scrofa OX=9823 GN=HPCAL4 PE=1 SV=1 CANONICAL=A0A4X1VW14-1" }, "locus": { "chromosome": "6", "start_pos": 95509432, "end_pos": 95506263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083881.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083881.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061720.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061720.1" } ] } }, { "isoform_ac": "A0A5G2R532-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R532/entry", "sequence": { "sequence": "MWSFFFMGGGCYEEREPLSYRDLWKGCRGEGLALDQTEGAPCPPGPAMGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKVGGALRVGQEGEFFPYGDNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 236, "header": "tr|A0A5G2R532-1|A0A5G2R532_PIG Computationally mapped isoform of Hippocalcin-like protein 4 OS=Sus scrofa OX=9823 GN=HPCAL4 PE=1 SV=2 CANONICAL=A0A4X1VW14-1" }, "locus": { "chromosome": "6", "start_pos": 95509573, "end_pos": 95506525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071428.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071428.2" } ] } }, { "isoform_ac": "F2Z5V9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V9/entry", "sequence": { "sequence": "MWSFFFMGGGCYEEREPLSYRDLWKGCRGEGLALDQTEGAPCPPGPAMGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 238, "header": "tr|F2Z5V9-1|F2Z5V9_PIG Computationally mapped isoform of Hippocalcin-like protein 4 OS=Sus scrofa OX=9823 GN=HPCAL4 PE=1 SV=2 CANONICAL=A0A4X1VW14-1" }, "locus": { "chromosome": "6", "start_pos": 95509573, "end_pos": 95506525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031391.5", "url": "https://www.ensembl.org/id/ENSSSCT00000031391.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021803.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021803.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A3KPW8-1", "protein_name": "Hippocalcin-like protein 4", "gene_name": "hpcal4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGKHNSKLAPEVLDDLTKSTEFNEAELKQWYKGFLKDCPSGILNLEEFQQLYVKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRMEMLEIIEAIYKMVGTVIMMRMNEDGLTPQQRVDKIFSKMDKDHNDEISLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191 }, "evidence": [ { "id": "A0A4X1VW14", "url": "https://omabrowser.org/oma/group/A0A4X1VW14/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HN80-1", "protein_name": "Hippocalcin-like protein 4", "gene_name": "Hpcal4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKNNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191 }, "evidence": [ { "id": "A0A4X1VW14", "url": "https://omabrowser.org/oma/group/A0A4X1VW14/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P29104-1", "protein_name": "Hippocalcin-like protein 4", "gene_name": "HPCAL4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191 }, "evidence": [ { "id": "A0A4X1VW14", "url": "https://omabrowser.org/oma/group/A0A4X1VW14/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P35332-1", "protein_name": "Hippocalcin-like protein 4", "gene_name": "Hpcal4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKNNSKLAPEELEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191 }, "evidence": [ { "id": "A0A4X1VW14", "url": "https://omabrowser.org/oma/group/A0A4X1VW14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BGZ1-1", "protein_name": "Hippocalcin-like protein 4", "gene_name": "Hpcal4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKNNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK", "length": 191 }, "evidence": [ { "id": "A0A4X1VW14", "url": "https://omabrowser.org/oma/group/A0A4X1VW14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VW14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VW14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VW14" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 95, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VWH5-1", "uniprot_ac": "A0A4X1VWH5", "uniprot_id": "A0A4X1VWH5_PIG", "mass": { "chemical_mass": 40010.0, "monoisotopic_mass": 40010.0 }, "refseq": { "ac": "XP_020930194", "name": "LRP2-binding protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930194" }, "gene_names": [ { "name": "LRP2BP", "type": "recommended", "evidence": [ { "id": "A0A4X1VWH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5" } ] }, { "name": "LRP2BP", "type": "synonym", "evidence": [ { "id": "XP_020930194", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930194" } ] } ], "protein_names": [ { "name": "LRP2-binding protein", "type": "recommended", "evidence": [ { "id": "A0A4X1VWH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5/entry#names_and_taxonomy" } ] }, { "name": "LRP2-binding protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020930194", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930194" } ] } ], "function": [ { "annotation": "May act as an adapter that regulates LRP2 function.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5#function" }, { "database": "UniProtKB", "id": "ARBA00037614", "url": "https://www.uniprot.org/uniprotkb/ARBA00037614#function" }, { "database": "UniProtKB", "id": "A0A5G2QGK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK7#function" }, { "database": "UniProtKB", "id": "A0A286ZIF1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIF1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRP2BP", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5", "locus": { "chromosome": "15", "start_pos": 46383432, "end_pos": 46445643, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015792", "url": "https://www.ensembl.org/id/ENSSSCG00000015792" } ] } } ], "crossref": [ { "id": "A0A4X1VWH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VWH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155710", "url": "https://www.ncbi.nlm.nih.gov/gene/100155710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TDHYTHA", "url": "https://omabrowser.org/oma/group/TDHYTHA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR44554", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44554", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44554:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44554:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930194", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930194", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZIF1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VWH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VWH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLTSEKLPKNPFYLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQLTDCLPEFISKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALADELHTLLIRQRI", "length": 348, "header": "tr|A0A4X1VWH5-1|A0A4X1VWH5_PIG Isoform 1 of LRP2-binding protein OS=Sus scrofa OX=9823 GN=LRP2BP PE=4 SV=1 CANONICAL=A0A4X1VWH5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIF1/entry", "sequence": { "sequence": "MESFAFKSDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQLTDCLPEFISKGMAMASFYHARCLQLGLGITKDEATAKHYYSKVSLTININGLNRNV", "length": 314, "header": "tr|A0A286ZIF1-1|A0A286ZIF1_PIG Computationally mapped isoform of LRP2-binding protein OS=Sus scrofa OX=9823 GN=LRP2BP PE=4 SV=3 CANONICAL=A0A4X1VWH5-1" }, "locus": { "chromosome": "15", "start_pos": 46428940, "end_pos": 46402088, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059312.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059312.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031349.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031349.3" } ] } }, { "isoform_ac": "A0A4X1VWH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5/entry", "sequence": { "sequence": "MKLTSEKLPKNPFYLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQLTDCLPEFISKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALADELHTLLIRQRI", "length": 348, "header": "tr|A0A4X1VWH5-1|A0A4X1VWH5_PIG Isoform 1 of LRP2-binding protein OS=Sus scrofa OX=9823 GN=LRP2BP PE=4 SV=1 CANONICAL=A0A4X1VWH5-1" }, "locus": { "chromosome": "15", "start_pos": 46429726, "end_pos": 46395003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017195.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017195.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016734.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016734.2" } ] } }, { "isoform_ac": "A0A5G2QGK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK7/entry", "sequence": { "sequence": "MRRAESPRRTQNTHCGNRMKLTSEKLPKNPFYLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQLTDCLPEFISKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALADELHTLLIRQRI", "length": 366, "header": "tr|A0A5G2QGK7-1|A0A5G2QGK7_PIG Computationally mapped isoform of LRP2-binding protein OS=Sus scrofa OX=9823 GN=LRP2BP PE=4 SV=2 CANONICAL=A0A4X1VWH5-1" }, "locus": { "chromosome": "15", "start_pos": 46445603, "end_pos": 46395003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070542.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070542.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062943.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062943.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1B9G6-1", "protein_name": "LRP2-binding protein", "gene_name": "LRP2BP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLTSEKLPKNPSYTSLSHFAAKNAKVFQWRKEKTDHYSHANLVDKALQLLKERIRRGDTMAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTAADSEKGVEYMKKIVDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSDKEAERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFISRGMAMASFYHARCLQLGLGVTKDEATAKRYYSKACRLNPALADELHTLLIHQRI", "length": 348 }, "evidence": [ { "id": "A0A4X1VWH5", "url": "https://omabrowser.org/oma/group/A0A4X1VWH5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q569C2-1", "protein_name": "LRP2-binding protein", "gene_name": "Lrp2bp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLTSEKLPKNPFSLSQYAAKQQTFFQWKKEKPDYYRHANLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAEKGVGYMKKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKASVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYLYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFISKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLNPTLADELHSLLIHQRI", "length": 346 }, "evidence": [ { "id": "A0A4X1VWH5", "url": "https://omabrowser.org/oma/group/A0A4X1VWH5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D4C6-1", "protein_name": "LRP2-binding protein", "gene_name": "Lrp2bp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI", "length": 346 }, "evidence": [ { "id": "A0A4X1VWH5", "url": "https://omabrowser.org/oma/group/A0A4X1VWH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2M1-1", "protein_name": "LRP2-binding protein", "gene_name": "LRP2BP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLPEFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI", "length": 347 }, "evidence": [ { "id": "A0A4X1VWH5", "url": "https://omabrowser.org/oma/group/A0A4X1VWH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VWH7-1", "uniprot_ac": "A0A4X1VWH7", "uniprot_id": "A0A4X1VWH7_PIG", "mass": { "chemical_mass": 17240.0, "monoisotopic_mass": 17240.0 }, "refseq": { "ac": "XP_020941411", "name": "MAL-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941411" }, "gene_names": [ { "name": "MALL", "type": "recommended", "evidence": [ { "id": "A0A4X1VWH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ] }, { "name": "MALL", "type": "synonym", "evidence": [ { "id": "XP_020941411", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941411" } ] } ], "protein_names": [ { "name": "MAL-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020941411", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941411" } ] }, { "name": "Mal, T cell differentiation protein like", "type": "synonym", "evidence": [ { "id": "A0A4X1VWH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MALL", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7", "locus": { "chromosome": "3", "start_pos": 46280341, "end_pos": 46315694, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059997", "url": "https://www.ensembl.org/id/ENSSSCG00000059997" } ] } } ], "crossref": [ { "id": "A0A4X1VWH7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VWH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100626835", "url": "https://www.ncbi.nlm.nih.gov/gene/100626835", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FWVWVLV", "url": "https://omabrowser.org/oma/group/FWVWVLV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VWH7", "url": "https://www.orthodb.org/?gene=A0A4X1VWH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941411", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941411", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VWH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRDPPATTYAPPDVPSGVALFLTIPYTFFVPELVFGFWVWILVAATQVANPLLQGWVMYVSLTSFLISLMFLLSYVFGFYKRYESWKILDSLYHGTTGILYMSAAVLQAHATIVSETQDLKNYFINTAASFFAFITALLYILHAFSIYYH", "length": 152, "header": "tr|A0A4X1VWH7-1|A0A4X1VWH7_PIG Isoform 1 of Mal, T cell differentiation protein like OS=Sus scrofa OX=9823 GN=MALL PE=4 SV=1 CANONICAL=A0A4X1VWH7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VWH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7/entry", "sequence": { "sequence": "MASRDPPATTYAPPDVPSGVALFLTIPYTFFVPELVFGFWVWILVAATQVANPLLQGWVMYVSLTSFLISLMFLLSYVFGFYKRYESWKILDSLYHGTTGILYMSAAVLQAHATIVSETQDLKNYFINTAASFFAFITALLYILHAFSIYYH", "length": 152, "header": "tr|A0A4X1VWH7-1|A0A4X1VWH7_PIG Isoform 1 of Mal, T cell differentiation protein like OS=Sus scrofa OX=9823 GN=MALL PE=4 SV=1 CANONICAL=A0A4X1VWH7-1" }, "locus": { "chromosome": "3", "start_pos": 46307292, "end_pos": 46282112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098016.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098016.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080273.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080273.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LYQ1-1", "protein_name": "MAL-like protein isoform X1", "gene_name": "Mall", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASRDTPPATSYAPPDVPSGVVAVFLTIPFAFFLPELVFGFLVWTLVAATHIANPLLHGWVLYVSLTSFLISLMFLMSYLLGFYKRFESWRVLDSLYHGTTGILYMSAAVLQAHATIISEGGNSSQYYINTAASFFAFLTTLLYILHAFSIYYH", "length": 154 }, "evidence": [ { "id": "A0A4X1VWH7", "url": "https://omabrowser.org/oma/group/A0A4X1VWH7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q13021-1", "protein_name": "MAL-like protein", "gene_name": "MALL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYYH", "length": 153 }, "evidence": [ { "id": "A0A4X1VWH7", "url": "https://omabrowser.org/oma/group/A0A4X1VWH7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91X49-1", "protein_name": "MAL-like protein", "gene_name": "Mall", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRDTPPATSYAPPDVPSGVAALFLTIPFAFFLPELVFGFWVWTLVAATHVAYPLLQGWVLYVSLTSFLISLMFLMSYLFGFYKRFESWRVLDSLYHGTTGILYMSASVLQAYATIISEGHNLSHYYINVAASFFAFLTTLLYILHAFSIYYH", "length": 154 }, "evidence": [ { "id": "A0A4X1VWH7", "url": "https://omabrowser.org/oma/group/A0A4X1VWH7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of myelin sheath", "id": "GO:0019911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" }, { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" }, { "name": "clathrin-coated vesicle", "id": "GO:0030136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030136", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "myelination", "id": "GO:0042552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042552", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VWH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWH7" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 152, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W130-1", "uniprot_ac": "A0A4X1W130", "uniprot_id": "A0A4X1W130_PIG", "mass": { "chemical_mass": 75252.0, "monoisotopic_mass": 75252.0 }, "refseq": { "ac": "XP_020934947", "name": "zinc finger protein 800 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934947" }, "gene_names": [ { "name": "ZNF800", "type": "recommended", "evidence": [ { "id": "A0A4X1W130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ] }, { "name": "ZNF800", "type": "synonym", "evidence": [ { "id": "XP_020934947", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934947" } ] } ], "protein_names": [ { "name": "Zinc finger protein 800", "type": "synonym", "evidence": [ { "id": "A0A4X1W130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 800 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934947", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934947" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF800", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130", "locus": { "chromosome": "18", "start_pos": 20856933, "end_pos": 20834506, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024157", "url": "https://www.ensembl.org/id/ENSSSCG00000024157" } ] } } ], "crossref": [ { "id": "A0A4X1W130", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W130", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024157", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024157", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523758", "url": "https://www.ncbi.nlm.nih.gov/gene/100523758", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523758", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523758", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SSCICHE", "url": "https://omabrowser.org/oma/group/SSCICHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W130", "url": "https://www.orthodb.org/?gene=A0A4X1W130", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934947", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934947", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AZM0", "url": "https://www.uniprot.org/uniprotkb/A0A287AZM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VWJ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VWJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W130-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0KFF2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KFF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0KFF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KFF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALVW", "length": 665, "header": "tr|A0A4X1W130-1|A0A4X1W130_PIG Isoform 1 of Zinc finger protein 800 OS=Sus scrofa OX=9823 GN=ZNF800 PE=3 SV=1 CANONICAL=A0A4X1W130-1" }, "isoforms": [ { "isoform_ac": "A0A287AZM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZM0/entry", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVS", "length": 336, "header": "tr|A0A287AZM0-1|A0A287AZM0_PIG Computationally mapped isoform of Zinc finger protein 800 OS=Sus scrofa OX=9823 GN=ZNF800 PE=4 SV=3 CANONICAL=A0A4X1W130-1" }, "locus": { "chromosome": "18", "start_pos": 20854614, "end_pos": 20835738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030524.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030524.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049343.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049343.3" } ] } }, { "isoform_ac": "A0A4X1VWJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWJ3/entry", "sequence": { "sequence": "MLNFPFFFLSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALVW", "length": 623, "header": "tr|A0A4X1VWJ3-1|A0A4X1W130_PIG Computationally mapped isoform of Zinc finger protein 800 OS=Sus scrofa OX=9823 GN=ZNF800 PE=3 SV=1 CANONICAL=A0A4X1W130-1" }, "locus": { "chromosome": "18", "start_pos": 20855601, "end_pos": 20849897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057018.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057018.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045337.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045337.3" } ] } }, { "isoform_ac": "A0A4X1W130-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130/entry", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALVW", "length": 665, "header": "tr|A0A4X1W130-1|A0A4X1W130_PIG Isoform 1 of Zinc finger protein 800 OS=Sus scrofa OX=9823 GN=ZNF800 PE=3 SV=1 CANONICAL=A0A4X1W130-1" }, "locus": { "chromosome": "18", "start_pos": 20855601, "end_pos": 20835738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058606.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058606.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038115.1" } ] } }, { "isoform_ac": "A0A8D0KFF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KFF2/entry", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALV", "length": 664, "header": "tr|A0A8D0KFF2-1|A0A8D0KFF2_PIG Computationally mapped isoform of Zinc finger protein 800 OS=Sus scrofa OX=9823 GN=ZNF800 PE=3 SV=1 CANONICAL=A0A4X1W130-1" }, "locus": { "chromosome": "18", "start_pos": 20855600, "end_pos": 20835738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025503.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025503.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021961.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021961.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VWJ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VWJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523758", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523758", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JY61-1", "protein_name": "Zinc finger protein 800", "gene_name": "Zfp800", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPVQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAISDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQIQETSSEQPKAVPEADTEVEEAIEPPPVETVADEATAPTEEQPQESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKTPNQSSKGRSKSALVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSASPKKSFKTRKQKSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEVKVKVEPGDSVESSPPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATTSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHAARALGRSAAP", "length": 717 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0X4N6-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLRDKCCQTEHHHHGCCEPVHILEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDINDKQSQAISDLLEAIYPRVDKQEYIVRLEPIETNQNAVFQYVSRTDSPVENTESSSAPDQAPVPIQEPSTEPPKAVSAPAPVGETVELPPADPVTNKTTPVPEEQPPAVTPEVDSLDNSDFGHQLICCLCRKEFHSRRSVRRHIRKVHKKKMEELKKYIETKKKPNLCSAKGRNKNVLVALGRSCPVCYKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDTVSAKKSFKARKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGKNSKREKGPNNTANGTEIKLKVEPADSVEPSPPSIALSPQNELKGTNHSNEKKNTPSAQKNKVKQDSENPKSTSKSTTKSTCKSTTKSTSKSTNASAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKYYRCPLCSYETRRKRDVIRHITVVHKKSPRYLGKITASLEIRAIKKPIDLVLNKVTKRGPQRDETKQIGSKHDVTSNSPNKKYEGADVGIEVKVTKNFSLHRCNKCGKAFARKAFLEHHKKTHKANVSHSPEENKTKGRSTRSKAIGSSDVRKIWSSFA", "length": 697 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7H7U3-1", "protein_name": "Zinc finger protein 800 isoform X4", "gene_name": "Znf800", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYALEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQVQETSTEQPKAVPDTDTEVVEVVAAPPVEIVVDEAAPPTEEQPRESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETQKTPNQTSKGRNKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDKATKPGQPLFLDPASPKKSFKTRKQKSSKPEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEIKVKVEPADSVESSSPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKARKPKLSVGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSNPDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHPARALGKSAARRRAAP", "length": 722 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BPK3-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKREYIIKLEPIETNQNAVFQYISRTDNPTEVTESSSTPEQPEVQIQETSTEQSKTVPVTDTEVETVEPPPVEIVADDVAPPSDEQPQESQADLETSDNSDFGHQLICCLCRKDFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSTKGRSKNVLVPLSRSCPVCYKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTASSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSLSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVTKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALV", "length": 664 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q0VEE6-1", "protein_name": "Zinc finger protein 800", "gene_name": "Znf800", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPVQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAISDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQIQETSSEQLKAVPDADTEVEEAIEPPSIETVVDEAAAPTEEQPQESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKTPNQSSKGRSKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSASPKKSFKTRKQKSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEVKVELADSVESSPPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSREEAKHNDSKQDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALV", "length": 662 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q2TB10-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKREYIIKLEPIETNQNAVFQYISRTDNPIEVTESSSTPEQTEVQIQETSTEQSKTVPVTDTEVETVEPPPVEIVTDEVAPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSISPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDSKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALV", "length": 664 }, "evidence": [ { "id": "A0A4X1W130", "url": "https://omabrowser.org/oma/group/A0A4X1W130/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W130", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 643, "end_pos": 645, "annotation": "n_glycosylation_sequon" }, { "start_pos": 651, "end_pos": 653, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W130" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 258, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 271, "end_pos": 273 }, { "start_pos": 355, "end_pos": 357 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 500, "end_pos": 502 }, { "start_pos": 614, "end_pos": 616 }, { "start_pos": 643, "end_pos": 645 }, { "start_pos": 651, "end_pos": 653 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VX34-1", "uniprot_ac": "A0A4X1VX34", "uniprot_id": "A0A4X1VX34_PIG", "mass": { "chemical_mass": 12012.0, "monoisotopic_mass": 12012.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VX34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VX34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34", "locus": {} } ], "crossref": [ { "id": "A0A4X1VX34", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VX34", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VX34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VX34-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKFRLSPGYLSNFTNPNRPIPSNTLHIRYNNSLLISNTYLPRCKLWMNYPLSTCKRSINILHLLVYPCGPRYQINRLVDKNILSKMSLLKKKIRNEDLTLS", "length": 102, "header": "tr|A0A4X1VX34-1|A0A4X1VX34_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VX34-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VX34-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34/entry", "sequence": { "sequence": "MMKFRLSPGYLSNFTNPNRPIPSNTLHIRYNNSLLISNTYLPRCKLWMNYPLSTCKRSINILHLLVYPCGPRYQINRLVDKNILSKMSLLKKKIRNEDLTLS", "length": 102, "header": "tr|A0A4X1VX34-1|A0A4X1VX34_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VX34-1" }, "locus": { "chromosome": "15", "start_pos": 36912118, "end_pos": 36911813, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069850.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069850.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062948.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062948.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VX34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VXU7-1", "uniprot_ac": "A0A4X1VXU7", "uniprot_id": "A0A4X1VXU7_PIG", "mass": { "chemical_mass": 30305.0, "monoisotopic_mass": 30305.0 }, "refseq": {}, "gene_names": [ { "name": "ASB5", "type": "recommended", "evidence": [ { "id": "A0A4X1VXU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and SOCS box containing 5", "type": "synonym", "evidence": [ { "id": "A0A4X1VXU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASB5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7", "locus": { "chromosome": "15", "start_pos": 38710179, "end_pos": 38790460, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030395", "url": "https://www.ensembl.org/id/ENSSSCG00000030395" } ] } } ], "crossref": [ { "id": "A0A4X1VXU7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VXU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030395", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030395", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03724", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03724", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511413", "url": "https://www.ncbi.nlm.nih.gov/gene/100511413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051573", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051573", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511413", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511413", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LASREEC", "url": "https://omabrowser.org/oma/group/LASREEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VYX4", "url": "https://www.orthodb.org/?gene=A0A4X1VYX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24136:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24136:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VX45", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VX45-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VXU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VXU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYX4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC32", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDG3", "url": "https://www.uniprot.org/uniprotkb/I3LDG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDG3-1", "url": "https://www.uniprot.org/uniprotkb/I3LDG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLYKGGNLALTGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 276, "header": "tr|A0A4X1VXU7-1|A0A4X1VXU7_PIG Isoform 1 of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=1 CANONICAL=A0A4X1VXU7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VX45-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX45/entry", "sequence": { "sequence": "MPADLAVEGSCIKQILPKRRLASIEECSSKRKASWGILTSQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 305, "header": "tr|A0A4X1VX45-1|A0A4X1VXU7_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=1 CANONICAL=A0A4X1VXU7-1" }, "locus": { "chromosome": "15", "start_pos": 38732291, "end_pos": 38712537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039909.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039909.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032894.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032894.1" } ] } }, { "isoform_ac": "A0A4X1VXU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7/entry", "sequence": { "sequence": "MRLYKGGNLALTGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 276, "header": "tr|A0A4X1VXU7-1|A0A4X1VXU7_PIG Isoform 1 of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=1 CANONICAL=A0A4X1VXU7-1" }, "locus": { "chromosome": "15", "start_pos": 38736499, "end_pos": 38712537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066588.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066588.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068132.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068132.1" } ] } }, { "isoform_ac": "A0A4X1VYX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX4/entry", "sequence": { "sequence": "MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVTQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 329, "header": "tr|A0A4X1VYX4-1|A0A4X1VYX4_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=1 CANONICAL=A0A4X1VXU7-1" }, "locus": { "chromosome": "15", "start_pos": 38758959, "end_pos": 38712537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048988.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048988.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034584.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034584.1" } ] } }, { "isoform_ac": "A0A8W4FC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC32/entry", "sequence": { "sequence": "MSRLYSTSGWLEVPWGDGDLGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 284, "header": "tr|A0A8W4FC32-1|A0A8W4FC32_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=1 CANONICAL=A0A4X1VXU7-1" }, "locus": { "chromosome": "15", "start_pos": 38726570, "end_pos": 38712537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092356.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092356.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075852.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075852.1" } ] } }, { "isoform_ac": "I3LDG3-1", "url": "https://www.uniprot.org/uniprotkb/I3LDG3/entry", "sequence": { "sequence": "PAGIFFPQDQLFRSIPDRSQAHRRLGSNRRQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVTQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSRGSRSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGIDVDQDIPHLGTPLYVACMSQQFHCIRKLLYAGADVQKGKYWDTPLHAAAQQSCPEIVNLLLEFGADINAKNTELLRPIDVATSSSLVERLLLQHEATPSSLCQLCRLCIRNYIGRARLHLIPQLQLPTLLQNFLQYR", "length": 347, "header": "tr|I3LDG3-1|I3LDG3_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 5 OS=Sus scrofa OX=9823 GN=ASB5 PE=3 SV=2 CANONICAL=A0A4X1VXU7-1" }, "locus": { "chromosome": "15", "start_pos": 38759072, "end_pos": 38712537, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023661.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023661.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022094.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VX45", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511413", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511413", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8XZ77-1", "protein_name": "Ankyrin repeat and SOCS box-containing 5", "gene_name": "Asb5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVSQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLEAGANANAITIDGVTPLFNACSQGSASCAELLLEYGAKAQLESCFPSPTHEAASKGHHECLNVLIAWGVDIDQDIPHLGTPLYVACMSQQFHCIWKLLYAGADVHKGKYWDTPLHAAAQQPSTEIVNLLIEFGADINAKNTELLRPVDLVTSNSAVERILLQHEATPSSLCQLCRLCIRNYIGRQRLHLIPQMQLPTLLQNFLQYR", "length": 329 }, "evidence": [ { "id": "A0A4X1VXU7", "url": "https://omabrowser.org/oma/group/A0A4X1VXU7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17QS6-1", "protein_name": "Ankyrin repeat and SOCS box protein 5", "gene_name": "ASB5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSMVEENRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVTQGRGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLQAGANVNAITIDGVTPLFNACSQGSTSCTELLLEYGAKPQLESCLPSPTHEAASKGHHECLEILISWGVDVDQDIPHLGTPLYVACMSQQFHCVRKLLYAGADVQKGKYWDTPLHAAAQQSCTEIVNLLLEFGADINAKNTDLLRPVDVATSNSLVERLLLQHEATPSSLCQLCRLCIRNYIGRPRLHLIPQLQLPTLLQNFLQYR", "length": 329 }, "evidence": [ { "id": "A0A4X1VXU7", "url": "https://omabrowser.org/oma/group/A0A4X1VXU7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8WWX0-1", "protein_name": "Ankyrin repeat and SOCS box protein 5", "gene_name": "ASB5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVLEENRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVTQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTLDHVTPLHEACLGDHVACARTLLEAGANVNAITIDGVTPLFNACSQGSPSCAELLLEYGAKAQLESCLPSPTHEAASKGHHECLDILISWGIDVDQEIPHLGTPLYVACMSQQFHCIWKLLYAGADVQKGKYWDTPLHAAAQQSSTEIVNLLLEFGADINAKNTELLRPIDVATSSSMVERILLQHEATPSSLYQLCRLCIRSYIGKPRLHLIPQLQLPTLLKNFLQYR", "length": 329 }, "evidence": [ { "id": "A0A4X1VXU7", "url": "https://omabrowser.org/oma/group/A0A4X1VXU7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D1A4-1", "protein_name": "Ankyrin repeat and SOCS box protein 5", "gene_name": "Asb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIVKGNRKEAARIAAEFYGVSQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTIDHVTPLHEACLGDHVACARTLLEAGANANAITIDGVTPLFNACSQGSASCAELLLEYGAKAQLESCFPSPTHEAASKGHHECLDILIAWGIDVDQDIPHLGTPLYVACMSQQFHCIWKLLYAGADVHKGKYWDTPLHAAAQQPSTEIVNLLLEFGADINAKNTDLLRPVDLATSNSAVERILLQHEATPSSLCQLCRLCIRNYIGRQRFHLIPQLQLPTLLQNFLQYR", "length": 329 }, "evidence": [ { "id": "A0A4X1VXU7", "url": "https://omabrowser.org/oma/group/A0A4X1VXU7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" } ], "pmid": "" }, { "name": "positive regulation of protein catabolic process", "id": "GO:0045732", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045732", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VXU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXU7" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 224, "end_pos": 276, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VXI2-1", "uniprot_ac": "A0A4X1VXI2", "uniprot_id": "A0A4X1VXI2_PIG", "mass": { "chemical_mass": 103655.0, "monoisotopic_mass": 103655.0 }, "refseq": { "ac": "XP_013854135", "name": "zinc finger protein 473 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854135" }, "gene_names": [ { "name": "ZNF473", "type": "recommended", "evidence": [ { "id": "A0A4X1VXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ] }, { "name": "ZNF473", "type": "synonym", "evidence": [ { "id": "XP_013854135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854135" } ] } ], "protein_names": [ { "name": "Zinc finger protein 473", "type": "synonym", "evidence": [ { "id": "A0A4X1VXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 473 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013854135", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854135" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF473", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2", "locus": { "chromosome": "6", "start_pos": 55023141, "end_pos": 55009719, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037710", "url": "https://www.ensembl.org/id/ENSSSCG00000037710" } ] } } ], "crossref": [ { "id": "A0A4X1VXI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VXI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524202", "url": "https://www.ncbi.nlm.nih.gov/gene/100524202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524202", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524202", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSCAKCK", "url": "https://omabrowser.org/oma/group/YSCAKCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VXI2", "url": "https://www.orthodb.org/?gene=A0A4X1VXI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013854135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VXI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTLAARPQSAMTEEFVTLQDVAMDFTLEDWEQLRLDQSNLFWDTALDNYQSLFLLNPPRPNVTSRPDGGKELEALAKGSPESTAPDTAETKTSPLPQDLLAEGLSQEILETFSKDGLWNSHLGEACIGQSWLDSLLGDPESLLSSDIVTSKESPKLGPKSLLFLGADSVTCDLPEKSLTPANSQECGNDFGCFSEQSQQDTIQGGEKPYKCSECGKSFSRSYHLIQHWVIHTREEPTVHQEYENDFSQSTCLFVQPVTHTDYKSCVVCNKCGETFSQNTQLLWHQKIHTKEKPCKSQDSDHPSGHNSQPVEHQKTHPGGKSYKCKECGKGFSQTFHFTRHQKTHTRKRYECAKCKATFNFNKYLLQHQKIHAPKRIFECQECGKAFRQNSLLLKHQSVHTREKPYKCDECGKPFSHILTLKIHQSVHSGEKPYKCNDCGKAFYRNTHLNEHRRIHTGYKPHKCHKCVKSFSRLSHLIRHLSIHTTEKPYTCADCKETFSHNEYLIQHQKIHMVEAPYECQECGERFICHSTLTCHQSVHIREKQGLDKSRKILDENPEQTEHPKVSKKCFKCDECEKTFSCSKYLTQHKRIHTRVKPFECDQCGKAFGQSNQLIHHQRIHTGVKPYECGDCRKAFIHSTSLTKHQSTHKSEQLFKFNECSKTLHQSAYLLEHQLTHPAEKPFKHYMCDEVSAHSNYLIQHQGTQAGKESFEHHECGEMVQQSSCLSQHQRVRTIEKPYKCGDCGKTFSLGAQLVQHQRVHTGEKPYICQECGKAFSQSSCLSKHQRVHTGEKPYECGYCGKTFSRGAPLVRHQRIHTGEKPYVCQECGKAFRQSSCLSKHQRIHTGEKPYVCTECGKAFAQKANLTQHERTHTGEKPYVCDVCGKAFGLSSHLSQHQRIHMQEKA", "length": 906, "header": "tr|A0A4X1VXI2-1|A0A4X1VXI2_PIG Isoform 1 of Zinc finger protein 473 OS=Sus scrofa OX=9823 GN=ZNF473 PE=3 SV=1 CANONICAL=A0A4X1VXI2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VXI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2/entry", "sequence": { "sequence": "MRTLAARPQSAMTEEFVTLQDVAMDFTLEDWEQLRLDQSNLFWDTALDNYQSLFLLNPPRPNVTSRPDGGKELEALAKGSPESTAPDTAETKTSPLPQDLLAEGLSQEILETFSKDGLWNSHLGEACIGQSWLDSLLGDPESLLSSDIVTSKESPKLGPKSLLFLGADSVTCDLPEKSLTPANSQECGNDFGCFSEQSQQDTIQGGEKPYKCSECGKSFSRSYHLIQHWVIHTREEPTVHQEYENDFSQSTCLFVQPVTHTDYKSCVVCNKCGETFSQNTQLLWHQKIHTKEKPCKSQDSDHPSGHNSQPVEHQKTHPGGKSYKCKECGKGFSQTFHFTRHQKTHTRKRYECAKCKATFNFNKYLLQHQKIHAPKRIFECQECGKAFRQNSLLLKHQSVHTREKPYKCDECGKPFSHILTLKIHQSVHSGEKPYKCNDCGKAFYRNTHLNEHRRIHTGYKPHKCHKCVKSFSRLSHLIRHLSIHTTEKPYTCADCKETFSHNEYLIQHQKIHMVEAPYECQECGERFICHSTLTCHQSVHIREKQGLDKSRKILDENPEQTEHPKVSKKCFKCDECEKTFSCSKYLTQHKRIHTRVKPFECDQCGKAFGQSNQLIHHQRIHTGVKPYECGDCRKAFIHSTSLTKHQSTHKSEQLFKFNECSKTLHQSAYLLEHQLTHPAEKPFKHYMCDEVSAHSNYLIQHQGTQAGKESFEHHECGEMVQQSSCLSQHQRVRTIEKPYKCGDCGKTFSLGAQLVQHQRVHTGEKPYICQECGKAFSQSSCLSKHQRVHTGEKPYECGYCGKTFSRGAPLVRHQRIHTGEKPYVCQECGKAFRQSSCLSKHQRIHTGEKPYVCTECGKAFAQKANLTQHERTHTGEKPYVCDVCGKAFGLSSHLSQHQRIHMQEKA", "length": 906, "header": "tr|A0A4X1VXI2-1|A0A4X1VXI2_PIG Isoform 1 of Zinc finger protein 473 OS=Sus scrofa OX=9823 GN=ZNF473 PE=3 SV=1 CANONICAL=A0A4X1VXI2-1" }, "locus": { "chromosome": "6", "start_pos": 55021915, "end_pos": 55014729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037081.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037081.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524202", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524202", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M124-1", "protein_name": "Zinc finger protein 473", "gene_name": "Zfp473", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERKEEELKRSHWNQAAMAEEFVTLKDVAMDFTLEDWEDLESELGQRDLFWDATLNNYQDLFSFTHPPQPSLIFQPDVREELEAIVRGGPEATSDEATEAKNPPLQSGFLEEDLSQIMEIFSTEELNFESCIGENWFDSFLGDPESLPRPDISNKESPTDRRCHESESGLSPGPPHCTREGAVMSDSPEKNLDPVILKESRSDLSQQDSVQGQEKLYKCSECGKSFSQSYHLIQHWVIHARGELPAWQEQPGALSKGALLLMQPGTQTSSESYVCQECGKSFSQNMYLQWHQKIHTGEKLCKTQSDNLEKPSKGPSDEPGKQLVSEAADSAKLCDSRGWDQEKPPTNKRHDREDLHKGQYGDSPSVLHPKPIKHQKTATRAKCFRCRRCGKTFSWAFHLADHQKVHTQRLYGCTSCPAVFNLRKHFFQHRKTHFAKTVFECQECRKLFNRRSSLIKHQAVHTGEKPYKCNECGKAFNHFSTLKIHQRIHSGEKPYTCSECGKTFSRRTALTEHHRVHSGFRPHQCPVCPRRFSRPSHLTRHQLSHAAERLFGCAKCKETFGHKEQLERHYKSHTIECSYECKQCGEHFICSSTLNCHLSIHIRENTSEKVSGQHSQHTEKCFKNTKCGKAFNHSKYPEQHEKIHAKVASCEQSPCRNTCDQSMQPIHCQSSCAAVKPNKCTEPEKCIRNTSVSQHQPSQSEPPFKCNTCNRTFKQSAHLSNHQLIHTTEKPFKCKECDRAFKHSNYLIQHQKIHSVKDFECSECGKKFHQKSCLSKHQKIHSGQKPFKCADCGKAFIFSAQLIRHQRIHTGEKPYVCQECGKAFSQSSCLTLHLRTHTGEKPYTCSTCGKAFSQKANQRKHERTHSGEKPCACDVCGKSFGFSTHLRQHQRIHTKEKPRCQDCHKAFHSFSALSEHQKLHTCTAASTTAQSHLLTAEARASEGPHLEPAIETSTLQTSPPHSPNKNQ", "length": 967 }, "evidence": [ { "id": "A0A4X1VXI2", "url": "https://omabrowser.org/oma/group/A0A4X1VXI2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BI67-1", "protein_name": "Zinc finger protein 473 homolog", "gene_name": "Znf473", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERKEDDLKGGCWNQPAVAEEFETLKDLAMDFTVEDWKDLESEWDQRDLFWDVTLNHYQDMFSFTDTSQPSLTSQPDVREELEATSTEVPETKSSPLQSGFVEEDFSQIMEIFSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTREDAVMSASPEKTLTPVILKESRSDLSQEDSVQGHEKPYKCSECGESFSQSHHLIQHWVLHTSGEPPIWREQQRGLSQGAHFPMCPGTPASYESYTCQECGKRFSQNVYLQWHQKIHTGEKLCKTQSDSNLEGLSRSPSVEPGKQRLSKDTDSAKPSTIHGQDQEKPPTGESRDQENLHESQPGDRPSVLHPKPLRHQKTPTNAKCFRCKKCGETFSGAFHLAKHQRAHAQRLYKCASCPAVFNLSKHCFQHRKSHFPSAACECQGCRKSFNWRSSLIKHQAIHKGEKPYKCDECGKAFNHSSTLKIHQRIHSGQKPHKCSECGKAFCRRTDLTEHQRVHSGFRPHQCPVCARTFNRPSHLVRHRLRHAEERHFGCAKCKETFIYKEQLERHNKIHTIEGLYECKQCGEHFICRSTLNCHLSIHIRENTSEKVVGQNSQHTEKCFKNTKCRKAPNHSRYLGQHEKIHAQVTSGECDPCGETYDQSVQPICHQSICAGVKPSECAEPEKCTRNTSASEHHPSQREPSFKCDIYNRAFKQRAHLSKHQLIHITEKPFKCNECDRAFKQSNYLIQHQKTHTAEKHFECSECGKTFHQRSCLSKHQKIHSGEKPFKCGDCGKAFISGAQLIRHQRIHTGEKPYVCQECGKTFSQSSCLTLHLRIHTGEKPYTCGTCGKAFAQRANQRKHERIHTGEKPYACGLCGKAFGLRTHLQQHQRIHTKAKP", "length": 892 }, "evidence": [ { "id": "A0A4X1VXI2", "url": "https://omabrowser.org/oma/group/A0A4X1VXI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WTR7-1", "protein_name": "Zinc finger protein 473", "gene_name": "ZNF473", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEEFVTLKDVGMDFTLGDWEQLGLEQGDTFWDTALDNCQDLFLLDPPRPNLTSHPDGSEDLEPLAGGSPEATSPDVTETKNSPLMEDFFEEGFSQEIIEMLSKDGFWNSNFGEACIEDTWLDSLLGDPESLLRSDIATNGESPTECKSHELKRGLSPVSTVSTGEDSMVHNVSEKTLTPAKSKEYRGEFFSYSDHSQQDSVQEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPTVHQECEQGFDRNASLSVYPKTHTGYKFYVCNEYGTTFSQSTYLWHQKTHTGEKPCKSQDSDHPPSHDTQPGEHQKTHTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKRYECSKCQATFNLRKHLIQHQKTHAAKTTSECQECGKIFRHSSLLIEHQALHAGEEPYKCNERGKSFRHNSTLKIHQRVHSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPHKCQECVRSFSRPSHLMRHQAIHTAEKPYSCAECKETFSDNNRLVQHQKMHTVKTPYECQECGERFICGSTLKCHESVHAREKQGFFVSGKILDQNPEQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKPFECDQCGKAFGQSTRLIHHQRIHSRVRLYKWGEQGKAISSASLIKLQSFHTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPFKCSKCDRVFTQRNYLVQHERTHARKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPYVCQECGKAFTQSSCLSIHRRVHTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLYQCQRCQKAFRCHSSLSRHQRVHNKQQYCL", "length": 871 }, "evidence": [ { "id": "A0A4X1VXI2", "url": "https://omabrowser.org/oma/group/A0A4X1VXI2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" }, { "name": "mRNA 3'-end processing by stem-loop binding and cleavage", "id": "GO:0006398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 237, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VXI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXI2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 86, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 }, { "start_pos": 865, "end_pos": 867 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VY03-1", "uniprot_ac": "A0A4X1VY03", "uniprot_id": "A0A4X1VY03_PIG", "mass": { "chemical_mass": 46029.0, "monoisotopic_mass": 46029.0 }, "refseq": { "ac": "XP_020947085", "name": "polymerase delta-interacting protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947085" }, "gene_names": [ { "name": "POLDIP3", "type": "recommended", "evidence": [ { "id": "A0A4X1VY03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ] }, { "name": "POLDIP3", "type": "synonym", "evidence": [ { "id": "XP_020947085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947085" } ] } ], "protein_names": [ { "name": "Polymerase delta-interacting protein 3", "type": "recommended", "evidence": [ { "id": "A0A4X1VY03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03/entry#names_and_taxonomy" } ] }, { "name": "S6K1 Aly/REF-like target", "type": "synonym", "evidence": [ { "id": "A0A4X1VY03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03/entry#names_and_taxonomy" } ] }, { "name": "polymerase delta-interacting protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947085" } ] } ], "function": [ { "annotation": "Is involved in regulation of translation. Is preferentially associated with CBC-bound spliced mRNA-protein complexes during the pioneer round of mRNA translation. Contributes to enhanced translational efficiency of spliced over nonspliced mRNAs. Recruits activated ribosomal protein S6 kinase beta-1 I/RPS6KB1 to newly synthesized mRNA. Involved in nuclear mRNA export; probably mediated by association with the TREX complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4P3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4P3#function" }, { "database": "UniProtKB", "id": "ARBA00055514", "url": "https://www.uniprot.org/uniprotkb/ARBA00055514#function" }, { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03#function" }, { "database": "UniProtKB", "id": "A0A4X1W3I8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I8#function" }, { "database": "UniProtKB", "id": "F1SJQ4", "url": "https://www.uniprot.org/uniprotkb/F1SJQ4#function" }, { "database": "UniProtKB", "id": "A0A5G2QPM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLDIP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03", "locus": { "chromosome": "5", "start_pos": 6201938, "end_pos": 6174340, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000039", "url": "https://www.ensembl.org/id/ENSSSCG00000000039" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000039", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000039", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12681", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12681", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525164", "url": "https://www.ncbi.nlm.nih.gov/gene/100525164", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525164", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525164", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SNKRMMD", "url": "https://omabrowser.org/oma/group/SNKRMMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VY03", "url": "https://www.orthodb.org/?gene=A0A4X1VY03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19965", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19965", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19965:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19965:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947085", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4P3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4P3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VY03-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W3I8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W3I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0J8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7D4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZKF8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZKF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0ZKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZKF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJQ4", "url": "https://www.uniprot.org/uniprotkb/F1SJQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 420, "header": "tr|A0A4X1VY03-1|A0A4X1VY03_PIG Isoform 1 of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "isoforms": [ { "isoform_ac": "A0A287A4P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4P3/entry", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 389, "header": "tr|A0A287A4P3-1|A0A287A4P3_PIG Computationally mapped isoform of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6174559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048614.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048614.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038749.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038749.1" } ] } }, { "isoform_ac": "A0A4X1VY03-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03/entry", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 420, "header": "tr|A0A4X1VY03-1|A0A4X1VY03_PIG Isoform 1 of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6174559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084220.3", "url": "https://www.ensembl.org/id/ENSSSCT00000084220.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069604.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069604.1" } ] } }, { "isoform_ac": "A0A4X1W3I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I8/entry", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 391, "header": "tr|A0A4X1W3I8-1|A0A4X1W3I8_PIG Computationally mapped isoform of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6174559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073844.3", "url": "https://www.ensembl.org/id/ENSSSCT00000073844.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064848.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064848.1" } ] } }, { "isoform_ac": "A0A5G2QPM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM3/entry", "sequence": { "sequence": "MMDFIWNALHYGFIWILNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 416, "header": "tr|A0A5G2QPM3-1|A0A5G2QPM3_PIG Computationally mapped isoform of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6182025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086723.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086723.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064024.1" } ] } }, { "isoform_ac": "A0A5G2R0J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J8/entry", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGESGRKQENPQGDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 406, "header": "tr|A0A5G2R0J8-1|A0A5G2R0J8_PIG Computationally mapped isoform of DNA polymerase delta interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6174559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079682.3", "url": "https://www.ensembl.org/id/ENSSSCT00000079682.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070633.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070633.1" } ] } }, { "isoform_ac": "A0A5G2R7D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D4/entry", "sequence": { "sequence": "MLILFGIVWKLLSRMVLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGESGRKQENPQGDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 402, "header": "tr|A0A5G2R7D4-1|A0A5G2R7D4_PIG Computationally mapped isoform of DNA polymerase delta interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6185029, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075015.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075015.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066511.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066511.1" } ] } }, { "isoform_ac": "A0A8D0ZKF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0ZKF8/entry", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 360, "header": "tr|A0A8D0ZKF8-1|A0A8D0ZKF8_PIG Computationally mapped isoform of DNA polymerase delta interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=1 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6174559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057438.4", "url": "https://www.ensembl.org/id/ENSSSCT00000057438.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053204.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053204.2" } ] } }, { "isoform_ac": "F1SJQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJQ4/entry", "sequence": { "sequence": "MLFSVLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKFVAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRVNSAGSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 405, "header": "tr|F1SJQ4-1|F1SJQ4_PIG Computationally mapped isoform of Polymerase delta-interacting protein 3 OS=Sus scrofa OX=9823 GN=POLDIP3 PE=1 SV=5 CANONICAL=A0A4X1VY03-1" }, "locus": { "chromosome": "5", "start_pos": 6199808, "end_pos": 6181970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000041.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000041.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000041.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000041.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525164", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525164", "resource": "KEGG Pathway" }, { "id": "R-SSC-159236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "resource": "Reactome", "description": "Transport of Mature mRNA derived from an Intron-Containing Transcript" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JXM5-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "Poldip3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADISLDELIRKRGTATKGRLSVRPGIGGVRSRVGIQHSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQNTVPQKPRQVADAREKISLKRRSPATFTSPPIGTVTPALKLTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVAPVPTKQMKFAAPGSLVHHTTGMSSPKLSMSKTLPLTKVVQNDAYTAPVLPSSVRTKALTNMSRTLVNKEELPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPVSSNPPAEVDPDTILRALFKSSGASVTTQPTEFKIKL", "length": 420 }, "evidence": [ { "id": "A0A4X1VY03", "url": "https://omabrowser.org/oma/group/A0A4X1VY03/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BG81-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "Poldip3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADLSLDELIRKRGTAAKGRLSVRPGIGGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVTPALKLTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL", "length": 420 }, "evidence": [ { "id": "A0A4X1VY03", "url": "https://omabrowser.org/oma/group/A0A4X1VY03/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BY77-1", "protein_name": "Polymerase delta-interacting protein 3", "gene_name": "POLDIP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIKL", "length": 421 }, "evidence": [ { "id": "A0A4X1VY03", "url": "https://omabrowser.org/oma/group/A0A4X1VY03/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "poly(A)+ mRNA export from nucleus", "id": "GO:0016973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016973", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "mRNA transport", "id": "GO:0051028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051028", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY03", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VY03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY03" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 279, "end_pos": 350, "start_aa": "Thr", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 251, "end_pos": 253 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VY07-1", "uniprot_ac": "A0A4X1VY07", "uniprot_id": "A0A4X1VY07_PIG", "mass": { "chemical_mass": 27339.0, "monoisotopic_mass": 27339.0 }, "refseq": {}, "gene_names": [ { "name": "RNF151", "type": "recommended", "evidence": [ { "id": "A0A4X1VY07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ] } ], "protein_names": [ { "name": "Ring finger protein 151", "type": "synonym", "evidence": [ { "id": "A0A4X1VY07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF151", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07", "locus": { "chromosome": "3", "start_pos": 39997647, "end_pos": 39999748, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034728", "url": "https://www.ensembl.org/id/ENSSSCG00000034728" } ] } } ], "crossref": [ { "id": "A0A4X1VY07", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VY07", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003613", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003613", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10131:SF157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10131:SF157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VY07-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGGYDLNLFASPPDCNFLCSVCHGVLKKPVRLPCSHIFCKKCILHWLARQKTCPCCRKEVKRKKMVHVNKLRKTIGRLEVKCKNAEVGCLVTCPLAHRKGHQDSCPFELTACPNEGCMSRVPRGALAEHRQHCQHGAHQRCPLGCGASLGPAERANHNCYRELREAWCQRQDRSRTLVLCLLRRMRKVHRATNLIRRQLAQLEDFLEEDDALLLGAPQEEAEASPESSTGAEVGGPKAKVPCK", "length": 244, "header": "tr|A0A4X1VY07-1|A0A4X1VY07_PIG Isoform 1 of Ring finger protein 151 OS=Sus scrofa OX=9823 GN=RNF151 PE=4 SV=1 CANONICAL=A0A4X1VY07-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VY07-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07/entry", "sequence": { "sequence": "MSGGYDLNLFASPPDCNFLCSVCHGVLKKPVRLPCSHIFCKKCILHWLARQKTCPCCRKEVKRKKMVHVNKLRKTIGRLEVKCKNAEVGCLVTCPLAHRKGHQDSCPFELTACPNEGCMSRVPRGALAEHRQHCQHGAHQRCPLGCGASLGPAERANHNCYRELREAWCQRQDRSRTLVLCLLRRMRKVHRATNLIRRQLAQLEDFLEEDDALLLGAPQEEAEASPESSTGAEVGGPKAKVPCK", "length": 244, "header": "tr|A0A4X1VY07-1|A0A4X1VY07_PIG Isoform 1 of Ring finger protein 151 OS=Sus scrofa OX=9823 GN=RNF151 PE=4 SV=1 CANONICAL=A0A4X1VY07-1" }, "locus": { "chromosome": "3", "start_pos": 39999549, "end_pos": 39997652, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047139.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047139.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052052.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052052.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY07", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VY07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 58, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VY07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY07" }, { "id": "PS50145", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50145" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAF-type", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 146, "start_aa": "His", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VY89-1", "uniprot_ac": "A0A4X1VY89", "uniprot_id": "A0A4X1VY89_PIG", "mass": { "chemical_mass": 13862.0, "monoisotopic_mass": 13862.0 }, "refseq": { "ac": "XP_020951602", "name": "U7 snRNA-associated Sm-like protein LSm10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951602" }, "gene_names": [ { "name": "LSM10", "type": "recommended", "evidence": [ { "id": "A0A4X1VY89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ] }, { "name": "LSM10", "type": "synonym", "evidence": [ { "id": "XP_020951602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951602" } ] } ], "protein_names": [ { "name": "U7 snRNA-associated Sm-like protein LSm10", "type": "recommended", "evidence": [ { "id": "A0A4X1VY89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89/entry#names_and_taxonomy" } ] }, { "name": "U7 snRNA-associated Sm-like protein LSm10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951602" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LSM10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89", "locus": { "chromosome": "6", "start_pos": 92489927, "end_pos": 92493665, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038916", "url": "https://www.ensembl.org/id/ENSSSCG00000038916" } ] } } ], "crossref": [ { "id": "A0A4X1VY89", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VY89", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01733", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01733", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110261147", "url": "https://www.ncbi.nlm.nih.gov/gene/110261147", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261147", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261147", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IADGHMT", "url": "https://omabrowser.org/oma/group/IADGHMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21196:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21196:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-111367", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111367", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73856", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77588", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77588", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VY89-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQVELDDLFVMGRNVRYVHIPDDVNITATIERQLQVIHRVRNFGGMGRREFPSKNSK", "length": 121, "header": "tr|A0A4X1VY89-1|A0A4X1VY89_PIG Isoform 1 of U7 snRNA-associated Sm-like protein LSm10 OS=Sus scrofa OX=9823 GN=LSM10 PE=3 SV=1 CANONICAL=A0A4X1VY89-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VY89-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89/entry", "sequence": { "sequence": "MAVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQVELDDLFVMGRNVRYVHIPDDVNITATIERQLQVIHRVRNFGGMGRREFPSKNSK", "length": 121, "header": "tr|A0A4X1VY89-1|A0A4X1VY89_PIG Isoform 1 of U7 snRNA-associated Sm-like protein LSm10 OS=Sus scrofa OX=9823 GN=LSM10 PE=3 SV=1 CANONICAL=A0A4X1VY89-1" }, "locus": { "chromosome": "6", "start_pos": 92490644, "end_pos": 92490282, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044178.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044178.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051263.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051263.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261147", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261147", "resource": "KEGG Pathway" }, { "id": "R-SSC-111367", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111367", "resource": "Reactome", "description": "SLBP independent Processing of Histone Pre-mRNAs" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77588", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77588", "resource": "Reactome", "description": "SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs" } ], "orthologs": [ { "uniprot_canonical_ac": "A1Z8C4-1", "protein_name": "Lsm10", "gene_name": "Lsm10", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQQFSAREKYLVSNTLNCWPVMLQGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQHPFDHFMVRNRMIRQIHIPSYLDAEQELRSAMERGVLRRKRVETKGGKRTFKQKRAEVRHKETLQMISQQKKNKET", "length": 141 }, "evidence": [ { "id": "A0A4X1VY89", "url": "https://omabrowser.org/oma/group/A0A4X1VY89/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "E1BY33-1", "protein_name": "LSM10, U7 small nuclear RNA associated", "gene_name": "LSM10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEVSHSVKERTIAENSLVILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGEVSQLDEIFVTGRNVRYVHIPDEVDIRATIERQLQAIHRVRYFGGRDKGRREFPRAKHK", "length": 123 }, "evidence": [ { "id": "A0A4X1VY89", "url": "https://omabrowser.org/oma/group/A0A4X1VY89/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q4QQS3-1", "protein_name": "Protein OSCP1", "gene_name": "Oscp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKVLNDIISTMFNRKFTEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDSIKGFIQDSPTIIHQVDETFRQLTEIYGSLSAGEFQLIRQTLLIFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGIEVPGVIRVFNDKGDEVKRMEFRHGGDYVAAHKEGSFELYGDRVLKLGTNMYSASRPVETHMSATSKNSASRAQENIAPNPLAKEELNFLARLIGGMEIKKPSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVISIQATQDQQRSEELARIMEEFEMTEQPERNTSKGDDLLAMMDRL", "length": 379 }, "evidence": [ { "id": "A0A4X1VY89", "url": "https://omabrowser.org/oma/group/A0A4X1VY89/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8QZX5-1", "protein_name": "U7 snRNA-associated Sm-like protein LSm10", "gene_name": "Lsm10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALSHSVKERTISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVHIPDGVDITATIEQQLQIIHRVRNFGGKGQGRREFPSKRP", "length": 122 }, "evidence": [ { "id": "A0A4X1VY89", "url": "https://omabrowser.org/oma/group/A0A4X1VY89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969L4-1", "protein_name": "U7 snRNA-associated Sm-like protein LSm10", "gene_name": "LSM10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPKNCK", "length": 123 }, "evidence": [ { "id": "A0A4X1VY89", "url": "https://omabrowser.org/oma/group/A0A4X1VY89/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "U7 snRNP", "id": "GO:0005683", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005683", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "cytoplasmic U snRNP body", "id": "GO:0071254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071254", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "positive regulation of G1/S transition of mitotic cell cycle", "id": "GO:1900087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900087", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "mRNA 3'-end processing by stem-loop binding and cleavage", "id": "GO:0006398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "histone pre-mRNA DCP binding", "id": "GO:0071208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071208", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" }, { "name": "U7 snRNA binding", "id": "GO:0071209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071209", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VY89", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VY89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VY89" }, { "id": "PS52002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sm", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 88, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VYW7-1", "uniprot_ac": "A0A4X1VYW7", "uniprot_id": "A0A4X1VYW7_PIG", "mass": { "chemical_mass": 41995.0, "monoisotopic_mass": 41995.0 }, "refseq": { "ac": "XP_013841147", "name": "probable G-protein coupled receptor 85", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841147" }, "gene_names": [ { "name": "GPR85", "type": "recommended", "evidence": [ { "id": "A0A4X1VYW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ] }, { "name": "GPR85", "type": "synonym", "evidence": [ { "id": "XP_013841147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841147" } ] } ], "protein_names": [ { "name": "G protein-coupled receptor 85", "type": "synonym", "evidence": [ { "id": "A0A4X1VYW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7/entry#names_and_taxonomy" } ] }, { "name": "probable G-protein coupled receptor 85", "type": "synonym", "evidence": [ { "id": "XP_013841147", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841147" } ] } ], "function": [ { "annotation": "Orphan receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7#function" }, { "database": "UniProtKB", "id": "ARBA00035627", "url": "https://www.uniprot.org/uniprotkb/ARBA00035627#function" }, { "database": "UniProtKB", "id": "A0A8D1THV8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1THV8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7", "locus": { "chromosome": "18", "start_pos": 32672740, "end_pos": 32667488, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016642", "url": "https://www.ensembl.org/id/ENSSSCG00000016642" } ] } } ], "crossref": [ { "id": "cd15218", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15218", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736987", "url": "https://www.ncbi.nlm.nih.gov/gene/100736987", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736987", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736987", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WCPYLVA", "url": "https://omabrowser.org/oma/group/WCPYLVA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VYW7", "url": "https://www.orthodb.org/?gene=A0A4X1VYW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19268:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19268:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013841147", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841147", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1THV8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1THV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1THV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1THV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370, "header": "tr|A0A4X1VYW7-1|A0A4X1VYW7_PIG Isoform 1 of G protein-coupled receptor 85 OS=Sus scrofa OX=9823 GN=GPR85 PE=4 SV=1 CANONICAL=A0A4X1VYW7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VYW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7/entry", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370, "header": "tr|A0A4X1VYW7-1|A0A4X1VYW7_PIG Isoform 1 of G protein-coupled receptor 85 OS=Sus scrofa OX=9823 GN=GPR85 PE=4 SV=1 CANONICAL=A0A4X1VYW7-1" }, "locus": { "chromosome": "18", "start_pos": 32671412, "end_pos": 32670303, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041887.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041887.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034363.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034363.1" } ] } }, { "isoform_ac": "A0A8D1THV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1THV8/entry", "sequence": { "sequence": "MANQMEEKKKHDCRSDHFSLWITFSVKSFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 378, "header": "tr|A0A8D1THV8-1|A0A8D1THV8_PIG Computationally mapped isoform of G protein-coupled receptor 85 OS=Sus scrofa OX=9823 GN=GPR85 PE=4 SV=1 CANONICAL=A0A4X1VYW7-1" }, "locus": { "chromosome": "18", "start_pos": 32671412, "end_pos": 32670141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018120.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018120.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017630.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017630.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 252, "start_aa": "Thr", "end_pos": 252, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr252", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736987", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736987", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BXX3-1", "protein_name": "G protein-coupled receptor 85", "gene_name": "GPR85", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFTSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GW31-1", "protein_name": "Probable G-protein coupled receptor 85", "gene_name": "Gpr85", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSSWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3N1Y5-1", "protein_name": "G protein-coupled receptor 85", "gene_name": "GPR85", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTSRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P60893-1", "protein_name": "Probable G protein-coupled receptor 85", "gene_name": "GPR85", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P60894-1", "protein_name": "Probable G protein-coupled receptor 85", "gene_name": "Gpr85", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P60895-1", "protein_name": "Probable G protein-coupled receptor 85", "gene_name": "Gpr85", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI", "length": 370 }, "evidence": [ { "id": "A0A4X1VYW7", "url": "https://omabrowser.org/oma/group/A0A4X1VYW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VYW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 339, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 252 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 227, "end_pos": 229 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VYW8-1", "uniprot_ac": "A0A4X1VYW8", "uniprot_id": "A0A4X1VYW8_PIG", "mass": { "chemical_mass": 54546.0, "monoisotopic_mass": 54546.0 }, "refseq": { "ac": "XP_020951176", "name": "zinc finger protein 436 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951176" }, "gene_names": [ { "name": "ZNF436", "type": "recommended", "evidence": [ { "id": "A0A4X1VYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ] }, { "name": "ZNF436", "type": "synonym", "evidence": [ { "id": "XP_020951176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951176" } ] } ], "protein_names": [ { "name": "Zinc finger protein 436", "type": "recommended", "evidence": [ { "id": "A0A4X1VYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 436 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951176" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF436", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8", "locus": { "chromosome": "6", "start_pos": 81250629, "end_pos": 81262351, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035332", "url": "https://www.ensembl.org/id/ENSSSCG00000035332" } ] } } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520912", "url": "https://www.ncbi.nlm.nih.gov/gene/100520912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520912", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EAHTGIR", "url": "https://omabrowser.org/oma/group/EAHTGIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VYW8", "url": "https://www.orthodb.org/?gene=A0A4X1VYW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVEFGTVSERPVGNTEENPESEEAFENRDRSERQWGDLTAEEWVNYPLQQVTDLLVHKEVHTSIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD", "length": 470, "header": "tr|A0A4X1VYW8-1|A0A4X1VYW8_PIG Isoform 1 of Zinc finger protein 436 OS=Sus scrofa OX=9823 GN=ZNF436 PE=3 SV=1 CANONICAL=A0A4X1VYW8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VYW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8/entry", "sequence": { "sequence": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVEFGTVSERPVGNTEENPESEEAFENRDRSERQWGDLTAEEWVNYPLQQVTDLLVHKEVHTSIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD", "length": 470, "header": "tr|A0A4X1VYW8-1|A0A4X1VYW8_PIG Isoform 1 of Zinc finger protein 436 OS=Sus scrofa OX=9823 GN=ZNF436 PE=3 SV=1 CANONICAL=A0A4X1VYW8-1" }, "locus": { "chromosome": "6", "start_pos": 81258300, "end_pos": 81253123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058530.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058530.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036393.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036393.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520912", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GFA5-1", "protein_name": "Zinc finger protein 436", "gene_name": "Zfp46", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMFLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEPLENAEKNPGSEEAFESGDRSERPWGDLTAEEWVSYPLQQVTDLLVHKEAHTGIRYHICSQCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECTECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECDKSFSRSSALIKHKRVHTD", "length": 452 }, "evidence": [ { "id": "A0A4X1VYW8", "url": "https://omabrowser.org/oma/group/A0A4X1VYW8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BMZ4-1", "protein_name": "Zinc finger protein 436", "gene_name": "ZNF436", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDPTQRDIYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVEFETASERPVGNTEENPESEEAFDNRDRSERQWGDLTAEEWVSYPLQQVTDLLVHKEVHTSIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD", "length": 470 }, "evidence": [ { "id": "A0A4X1VYW8", "url": "https://omabrowser.org/oma/group/A0A4X1VYW8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BPP0-1", "protein_name": "Zinc finger protein 436", "gene_name": "Znf436", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAMYLTREEWRPLDPTQRDLYRDVMQENYGNVVSLDFEIRSENEANPKQEFSDDVEFATMSEEPLENAEKNPGSEEAFESGDQAERPWGDLTAEEWVSYPLQQVTDLLVHKEAHAGIRYHICSQCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCTECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECHECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECDKSFSRSSALIKHKRVHTD", "length": 452 }, "evidence": [ { "id": "A0A4X1VYW8", "url": "https://omabrowser.org/oma/group/A0A4X1VYW8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0F3-1", "protein_name": "Zinc finger protein 436", "gene_name": "ZNF436", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAATLLMAGSQAPVTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLDFEIRSENEVNPKQEISEDVQFGTTSERPAENAEENPESEEGFESGDRSERQWGDLTAEEWVSYPLQPVTDLLVHKEVHTGIRYHICSHCGKAFSQISDLNRHQKTHTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRVHTGEKPYECTECEKSFSRSSALIKHKRVHTD", "length": 470 }, "evidence": [ { "id": "A0A4X1VYW8", "url": "https://omabrowser.org/oma/group/A0A4X1VYW8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYW8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 138, "end_pos": 165, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VYW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYW8" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 86, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 314, "end_pos": 316 }, { "start_pos": 342, "end_pos": 344 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VYX6-1", "uniprot_ac": "A0A4X1VYX6", "uniprot_id": "A0A4X1VYX6_PIG", "mass": { "chemical_mass": 53557.0, "monoisotopic_mass": 53557.0 }, "refseq": { "ac": "XP_020934652", "name": "nuclear respiratory factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934652" }, "gene_names": [ { "name": "NRF1", "type": "recommended", "evidence": [ { "id": "A0A4X1VYX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ] }, { "name": "NRF1", "type": "synonym", "evidence": [ { "id": "XP_020934652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934652" } ] } ], "protein_names": [ { "name": "Nuclear respiratory factor 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VYX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6/entry#names_and_taxonomy" } ] }, { "name": "nuclear respiratory factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934652" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NRF1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6", "locus": { "chromosome": "18", "start_pos": 18998930, "end_pos": 19142628, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016566", "url": "https://www.ensembl.org/id/ENSSSCG00000016566" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016566", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016566", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517203", "url": "https://www.ncbi.nlm.nih.gov/gene/100517203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVEPSWA", "url": "https://omabrowser.org/oma/group/EVEPSWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VYX6", "url": "https://www.orthodb.org/?gene=A0A4X1VYX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20338", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20338", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10491", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10491", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934652", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZZY0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R794", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R794", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R794-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R794-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QK59", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QK59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QK59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QK59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1W3T4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1W3T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1W3T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1W3T4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F754", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F754", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F754-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F754-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB06", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ", "length": 503, "header": "tr|A0A4X1VYX6-1|A0A4X1VYX6_PIG Isoform 1 of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZY0/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMAALAAYASSQPRV", "length": 471, "header": "tr|A0A286ZZY0-1|A0A286ZZY0_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19003748, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048237.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048237.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037199.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037199.2" } ] } }, { "isoform_ac": "A0A4X1VYX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ", "length": 503, "header": "tr|A0A4X1VYX6-1|A0A4X1VYX6_PIG Isoform 1 of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19010252, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045355.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045355.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045379.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045379.1" } ] } }, { "isoform_ac": "A0A5G2R794-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R794/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANANPSA", "length": 454, "header": "tr|A0A5G2R794-1|A0A5G2R794_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19036388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075698.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075698.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072210.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072210.1" } ] } }, { "isoform_ac": "A0A8D0QK59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QK59/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNRWRQGWAIKEEGESLPTYRFKEKRCASVCHNWHLELNTLGP", "length": 448, "header": "tr|A0A8D0QK59-1|A0A8D0QK59_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19045034, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018036.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018036.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017550.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017550.4" } ] } }, { "isoform_ac": "A0A8D1W3T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1W3T4/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANDDSSSL", "length": 455, "header": "tr|A0A8D1W3T4-1|A0A8D1W3T4_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19024622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027878.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027878.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024694.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024694.3" } ] } }, { "isoform_ac": "A0A8W4F754-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F754/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGPEWLLTNATGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ", "length": 513, "header": "tr|A0A8W4F754-1|A0A8W4F754_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19010252, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093712.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093712.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074638.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074638.1" } ] } }, { "isoform_ac": "A0A8W4FB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB06/entry", "sequence": { "sequence": "MEEHGVSQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGYYKLVSRFSCAIR", "length": 463, "header": "tr|A0A8W4FB06-1|A0A8W4FB06_PIG Computationally mapped isoform of Nuclear respiratory factor 1 OS=Sus scrofa OX=9823 GN=NRF1 PE=3 SV=1 CANONICAL=A0A4X1VYX6-1" }, "locus": { "chromosome": "18", "start_pos": 19087727, "end_pos": 19004082, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104466.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104466.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076581.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076581.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517203", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M2K8-1", "protein_name": "Nuclear respiratory factor 1", "gene_name": "NRF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVATRISDSAVTVDGQAVEVVTLEQ", "length": 503 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XI53-1", "protein_name": "Nuclear respiratory factor 1", "gene_name": "NRF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQQQTTTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGILAADYSGYKWSLAESLSGHGLKAELKQQWKGKKTPQPRFRHPSVLRNHGLKMVAET", "length": 507 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7F0D4-1", "protein_name": "Nuclear respiratory factor 1 isoform X6", "gene_name": "Nrf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAVLGIKPRASHILGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGPDEVHAWTIRKAMKAPQAAGKIHTEFGKGFIMAEVMKDEDLKVESSEIAAMAAGKYRQQGRAYVVEDGDIIFFKFKSPQHLKKK", "length": 546 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q16656-1", "protein_name": "Nuclear respiratory factor 1", "gene_name": "NRF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ", "length": 503 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q62792-1", "protein_name": "Nuclear respiratory factor 1", "gene_name": "Nrf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALN", "length": 52 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q90X44-2", "protein_name": "Nuclear respiratory factor 1", "gene_name": "nrf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDHTVHQTEHMTTIEAHAVSQQVGQVHVATYTEHGMLSADEDSPSSPDDDAYDDSDILNSTGTDEVTAHLAAAGPVGMAAAAAVATGKKRKRPHIFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFRVFGAAPLENVVRKYKSMILEDLENALAEHAPPGGGELSSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQVTTQVATTATHSIAHLVPSQTVVQTISNPDGTVSLIQVGTGATVATLADASELPGTVTVAQVNYSTVTDGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQTGATVTMALNRYSLEGALKFGEAAAHAVATLAEATLQGGGQIVLAGETAAAVGALTGVPDGSGLVQIPVSMYQTVVTSLAQGNRPVQVAMAPVTTRIDNTMTLDGQAVEVVTLEQ", "length": 514 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9WU00-1", "protein_name": "Nuclear respiratory factor 1", "gene_name": "Nrf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ", "length": 503 }, "evidence": [ { "id": "A0A4X1VYX6", "url": "https://omabrowser.org/oma/group/A0A4X1VYX6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VYX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYX6" }, { "id": "PF10491", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10491" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nuclear respiratory factor 1 NLS/DNA-binding dimerisation", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 282, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 347, "end_pos": 349 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VZ15-1", "uniprot_ac": "A0A4X1VZ15", "uniprot_id": "A0A4X1VZ15_PIG", "mass": { "chemical_mass": 44938.0, "monoisotopic_mass": 44938.0 }, "refseq": { "ac": "XP_003122026", "name": "PHD finger protein 24 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122026" }, "gene_names": [ { "name": "PHF24", "type": "recommended", "evidence": [ { "id": "A0A4X1VZ15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ] }, { "name": "PHF24", "type": "synonym", "evidence": [ { "id": "XP_003122026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122026" } ] } ], "protein_names": [ { "name": "PHD finger protein 24 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003122026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122026" } ] }, { "name": "PHD finger protein 24", "type": "synonym", "evidence": [ { "id": "A0A4X1VZ15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHF24", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15", "locus": { "chromosome": "1", "start_pos": 235783051, "end_pos": 235757797, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005296", "url": "https://www.ensembl.org/id/ENSSSCG00000005296" } ] } } ], "crossref": [ { "id": "A0A4X1VZ15", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VZ15", "database": "AlphaFoldDB", "categories": [] }, { "id": "100525378", "url": "https://www.ncbi.nlm.nih.gov/gene/100525378", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525378", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525378", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KGHIEWQ", "url": "https://omabrowser.org/oma/group/KGHIEWQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VZ15", "url": "https://www.orthodb.org/?gene=A0A4X1VZ15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46453:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46453:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZ15-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1U043", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U043", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1U043-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U043-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGEVPGSRRGTVEGSVQEVQEEKEAEASIPALQEESSANRAAWERLRDGRGVEPEEFDGTNRFTPPAFIRPTRKLDDDKTPDICLEPREPVVNDEMCDVCEVWTAESLLPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNLNLLLTEEEMYSLTETFQQCKVIPDCSLTLEDFLRYRHQAAKRGESDRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARATFLARGSGSSISEAECRRAQHSWFCKRLAEAPSCSVSVSHVGPIADSSPAGSIGKSQDKAMLPTEPESRFVDWPTFLQENVVYILAARPNSAAIHLKPPG", "length": 400, "header": "tr|A0A4X1VZ15-1|A0A4X1VZ15_PIG Isoform 1 of PHD finger protein 24 OS=Sus scrofa OX=9823 GN=PHF24 PE=1 SV=1 CANONICAL=A0A4X1VZ15-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VZ15-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15/entry", "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGEVPGSRRGTVEGSVQEVQEEKEAEASIPALQEESSANRAAWERLRDGRGVEPEEFDGTNRFTPPAFIRPTRKLDDDKTPDICLEPREPVVNDEMCDVCEVWTAESLLPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNLNLLLTEEEMYSLTETFQQCKVIPDCSLTLEDFLRYRHQAAKRGESDRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARATFLARGSGSSISEAECRRAQHSWFCKRLAEAPSCSVSVSHVGPIADSSPAGSIGKSQDKAMLPTEPESRFVDWPTFLQENVVYILAARPNSAAIHLKPPG", "length": 400, "header": "tr|A0A4X1VZ15-1|A0A4X1VZ15_PIG Isoform 1 of PHD finger protein 24 OS=Sus scrofa OX=9823 GN=PHF24 PE=1 SV=1 CANONICAL=A0A4X1VZ15-1" }, "locus": { "chromosome": "1", "start_pos": 235778646, "end_pos": 235771477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061314.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061314.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043891.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043891.1" } ] } }, { "isoform_ac": "A0A8D1U043-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1U043/entry", "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGEVPGSRRGTVEGSVQEVQEEKEAEASIPALQEESSANRAAWERLRDGRGVEPEEFDGTNRFTPPAFIRPTRKLDDDKTPDICLEPREPDNLNLLLTEEEMYSLTETFQQCKVIPDCSLTLEDFLRYRHQAAKRGESDRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARATFLARGSGSSISEAECRRAQHSWFCKRLAEAPSCSVSVSHVGPIADSSPAGSIGKSQDKAMLPTEPESRFVDWPTFLQENVVYILAARPNSAAIHLKPPG", "length": 338, "header": "tr|A0A8D1U043-1|A0A8D1U043_PIG Computationally mapped isoform of PHD finger protein 24 OS=Sus scrofa OX=9823 GN=PHF24 PE=1 SV=1 CANONICAL=A0A4X1VZ15-1" }, "locus": { "chromosome": "1", "start_pos": 235778646, "end_pos": 235771477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040897.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040897.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035511.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035511.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525378", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525378", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GMB9-1", "protein_name": "PHD finger protein 24", "gene_name": "Phf24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSVRRGGELPGSRRGTVEGSVQQVQEEKEAEASAPGVQEESSSNRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPDICLEPRESVVNDEMCDICEVWTAESLFPCRVCTRVFHDGCLRRMGYLQGDSAVEVTEMAHTETGWSCYYCDNLNLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFVRYRHQAAKRGDSTRALSDEQEEQAARQFAALDPEHRGHVEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARATFLARGRGSTISEAECHQARHSWFCKRLAEAPSCSVSISHVGPIADSSPAGSSSQSQEKALLPTEQESRFVDWPTFLRENVIYILAARPNSGAIHLKPPG", "length": 400 }, "evidence": [ { "id": "A0A4X1VZ15", "url": "https://omabrowser.org/oma/group/A0A4X1VZ15/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9QKZ1-1", "protein_name": "PHD finger protein 24 isoform X1", "gene_name": "phf24", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVLMSKKQQVEKVQKCSVVVSAFKDGLKDRAAPAAADQTDDVITENGDGSAEGAQHTDKEHPELKDKDSRPNQQAPPTEEQRANQEAWGRLRDGKGVEPEDLKKAHQLIPPAFVRPKRDVNDDQPVDVMLGQREQPVNDEMCEVCEVWTADDLFPCRTCTRVFHDGCLREMGYLSTEALQEMRETAHTTTGWSCYYCDNVNLLLTEEEMYSLMETFKQCKIIPESCLVSDELLQYRHFVTKQLFERDLTDEEEEEVLAQFAALDPEKKGQIEWSDFLYHETLSVLQKFRTENSLVRILTAKERDRARALFQSIDQDKDAIITAGEARKAQTSWFQKTNKESQSCNVRLMGLCSPLFSMGISHVGPISESSPASSSSERSRDKAMESDNRPVTWDNFLKESAIYILAARPNSSAMHIRLPL", "length": 421 }, "evidence": [ { "id": "A0A4X1VZ15", "url": "https://omabrowser.org/oma/group/A0A4X1VZ15/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80TL4-1", "protein_name": "PHD finger protein 24", "gene_name": "Phf24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRGGELPGSRRGTVEGSVQEVQEEKEAEASAPVVQEESSINRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPDICLEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYLQGDSAVEVTEMAHTETGWSCYYCDNLNLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFVRYRHQAAKRGESSRALTDEQEEQAARQFAALDPEQRGHVEWSDFLSHESLLLLLQLRPQNSLLRLLTVKERERARATFLARGRGSTISEAECHHARHSWFCKRLTEAPSCSVSISHVGPIADSSPAASSSKSQEKALLPTEQESRYVDWPTFLRENVIYILAARPNSGAIHLKPPG", "length": 400 }, "evidence": [ { "id": "A0A4X1VZ15", "url": "https://omabrowser.org/oma/group/A0A4X1VZ15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UPV7-1", "protein_name": "PHD finger protein 24", "gene_name": "PHF24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARAAFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG", "length": 400 }, "evidence": [ { "id": "A0A4X1VZ15", "url": "https://omabrowser.org/oma/group/A0A4X1VZ15/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VZ15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ15" }, { "id": "PF16744", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16744" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KIAA1045 RING finger", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 198, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VZ26-1", "uniprot_ac": "A0A4X1VZ26", "uniprot_id": "A0A4X1VZ26_PIG", "mass": { "chemical_mass": 20624.0, "monoisotopic_mass": 20624.0 }, "refseq": {}, "gene_names": [ { "name": "SPMIP9", "type": "recommended", "evidence": [ { "id": "A0A4X1VZ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ] } ], "protein_names": [ { "name": "Sperm microtubule inner protein 9", "type": "synonym", "evidence": [ { "id": "A0A4X1VZ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPMIP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26", "locus": { "chromosome": "3", "start_pos": 57524030, "end_pos": 57528514, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008209", "url": "https://www.ensembl.org/id/ENSSSCG00000008209" } ] } } ], "crossref": [ { "id": "A0A4X1VZ26", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VZ26", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR029361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SYMVDYK", "url": "https://omabrowser.org/oma/group/SYMVDYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VZ26", "url": "https://www.orthodb.org/?gene=A0A4X1VZ26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36882", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36882", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36882:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36882:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1P5A5", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P5A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1P5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P5A5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGVVYPRQAPVDLDTYQSSYMVDYKPYGKHKYVRVAPEEQAKLDTQLRNKEFYRPVPIANPRLEDGYAAFRRRHMTARDLGLPGFFPPQSHVTTVEDEGRFLSVCPTLYPVSHDLYLAHGDPNRIRQSADFPCLLEPERQPAVEVGTGYFLLPGCACPYRCTVKVPILNRWGPLMPFYQ", "length": 180, "header": "tr|A0A4X1VZ26-1|A0A4X1VZ26_PIG Isoform 1 of Sperm microtubule inner protein 9 OS=Sus scrofa OX=9823 GN=SPMIP9 PE=4 SV=1 CANONICAL=A0A4X1VZ26-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VZ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26/entry", "sequence": { "sequence": "MAGVVYPRQAPVDLDTYQSSYMVDYKPYGKHKYVRVAPEEQAKLDTQLRNKEFYRPVPIANPRLEDGYAAFRRRHMTARDLGLPGFFPPQSHVTTVEDEGRFLSVCPTLYPVSHDLYLAHGDPNRIRQSADFPCLLEPERQPAVEVGTGYFLLPGCACPYRCTVKVPILNRWGPLMPFYQ", "length": 180, "header": "tr|A0A4X1VZ26-1|A0A4X1VZ26_PIG Isoform 1 of Sperm microtubule inner protein 9 OS=Sus scrofa OX=9823 GN=SPMIP9 PE=4 SV=1 CANONICAL=A0A4X1VZ26-1" }, "locus": { "chromosome": "3", "start_pos": 57528496, "end_pos": 57524643, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078972.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078972.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070769.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070769.1" } ] } }, { "isoform_ac": "A0A8D1P5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P5A5/entry", "sequence": { "sequence": "QEGLIAPVDLDTYQSSYMVDYKPYGKHKYVRVAPEEQAKLDTQLRNKEFYRPVPIANPRLEDGYAAFRRRHMTARDLGLPGFFPPQSHVTTVEDEGRFLSVCPTLYPVSHDLYLAHGDPNRIRQSADFPCLLEPERQPAVEVGTGYFLLPGCACPYRCTVKVPILNRWGPLMPFYQ", "length": 176, "header": "tr|A0A8D1P5A5-1|A0A8D1P5A5_PIG Computationally mapped isoform of Sperm microtubule inner protein 9 OS=Sus scrofa OX=9823 GN=SPMIP9 PE=4 SV=1 CANONICAL=A0A4X1VZ26-1" }, "locus": { "chromosome": "3", "start_pos": 57527412, "end_pos": 57524643, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008990.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008990.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008764.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008764.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QE88-1", "protein_name": "Testis-expressed sequence 37 protein isoform X1", "gene_name": "Tex37", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARVVNPKKNYVDLDIYQSSYMVDYKPFGKQKYSRVTTEEQAKLDTQLRNKEFYRPMPSPNPRLEDGYPAFKRPYMTAKDLGLPGFFPPQEPETPEKEECRFTNTCYYAYPASLAMYLAQYEPFWLHQRKDFPCLFEPEKQPAPELGKGYLLLPGCPCFQHHSVKVPILNRWGPLLPFYQ", "length": 180 }, "evidence": [ { "id": "A0A4X1VZ26", "url": "https://omabrowser.org/oma/group/A0A4X1VZ26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A5PJD8-1", "protein_name": "Protein SPMIP9", "gene_name": "SPMIP9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGVVFPGQAPVDLDIYQSSYMIDYKPYGKHKYARVTSEVQAKLDTQLRDKEFYRPTPSPNPKLEDGYPAFKRPHMTAKDLGQPGFFPPQGRVGPVEDEWRFTSTCPSVYPASHALYLAHGDPNRIQQSADFPCLLEPEHQPAPDVGKGYFLLPGCACTYHCTVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A4X1VZ26", "url": "https://omabrowser.org/oma/group/A0A4X1VZ26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZLQ5-1", "protein_name": "Sperm microtubule inner protein 9", "gene_name": "Spmip9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHVVKPQKYQVDLDMYQSSYMIDFKPFGKHKYSRVTPQEAKLDAQLQSKEFYRPKPSPNPKLEDGYPAFKRVHMTALDLGVPGFFPPRDSTAKKDDGRFTTTCHYAYPASLALYLSQYDPYWLHQRADFPCLMEPERQPAPEVGKGYLLLPGCPCDHHQKVKVPILNRWGPLMPFYQ", "length": 178 }, "evidence": [ { "id": "A0A4X1VZ26", "url": "https://omabrowser.org/oma/group/A0A4X1VZ26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96LM6-1", "protein_name": "Protein SPMIP9", "gene_name": "SPMIP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGVKYPGQDPVDLDIYQSSHMVDYQPYRKHKYSRVTPQEQAKLDAQLRDKEFYRPIPNPNPKLTDGYPAFKRPHMTAKDLGLPGFFPSQEHEATREDERKFTSTCHFTYPASHDLHLAQGDPNQVLQSADFPCLVDPKHQPAAEMAKGYLLLPGCPCLHCHIVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A4X1VZ26", "url": "https://omabrowser.org/oma/group/A0A4X1VZ26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAG4-1", "protein_name": "Protein SPMIP9", "gene_name": "Spmip9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARVVRPQKNHVDLDIYQSSYMVDYKPFGKYKYSRVTPQEQAKLDAQLQSKEFYQPKPNPNPKLEEGYPAFRRPYMTALDLGVPGFFPPQERVTTRKDDGRFTTTCHYAYPASLALYLAQQDPYWLHQRADFPCLMEPERQPAPEVGKGYLLLPGCLCDHHQRVKVPILNRWGPLMPFYQ", "length": 180 }, "evidence": [ { "id": "A0A4X1VZ26", "url": "https://omabrowser.org/oma/group/A0A4X1VZ26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZ26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VZE5-1", "uniprot_ac": "A0A4X1VZE5", "uniprot_id": "A0A4X1VZE5_PIG", "mass": { "chemical_mass": 62732.0, "monoisotopic_mass": 62732.0 }, "refseq": { "ac": "XP_003134736", "name": "transmembrane protein 209", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134736" }, "gene_names": [ { "name": "TMEM209", "type": "recommended", "evidence": [ { "id": "A0A4X1VZE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5" } ] }, { "name": "TMEM209", "type": "synonym", "evidence": [ { "id": "XP_003134736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134736" } ] } ], "protein_names": [ { "name": "Transmembrane protein 209", "type": "synonym", "evidence": [ { "id": "A0A4X1VZE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 209", "type": "synonym", "evidence": [ { "id": "XP_003134736", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134736" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM209", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5", "locus": { "chromosome": "18", "start_pos": 18644708, "end_pos": 18615258, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016563", "url": "https://www.ensembl.org/id/ENSSSCG00000016563" } ] } } ], "crossref": [ { "id": "A0A4X1VZE5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VZE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100516476", "url": "https://www.ncbi.nlm.nih.gov/gene/100516476", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516476", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516476", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IRGMHLG", "url": "https://omabrowser.org/oma/group/IRGMHLG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VZE5", "url": "https://www.orthodb.org/?gene=A0A4X1VZE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21780", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21780", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21780:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21780:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09786", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09786", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134736", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134736", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VZE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0I0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0I0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGEPNPSASLIDRTIKMRKETEARKVVLAWGLLNVSMAGMIYTEMTGKLISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQTLLGLKTAVVQTTPPRDLAATQIPSSPPPSIQGQSVLSYSPSRSPSTSPKFTTSCITGYSPQLQGLSSGGSGSYSPGVTFSPVSGYNKLASYSPSPSSSYPTTVGPVESSGLRSRYRSSPTIYNSPTDKEDYMTDLRTLDTFLRNEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASITSLKQAALVKAPLIPTLNTIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCVYQSAINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 559, "header": "tr|A0A4X1VZE5-1|A0A4X1VZE5_PIG Isoform 1 of Transmembrane protein 209 OS=Sus scrofa OX=9823 GN=TMEM209 PE=4 SV=1 CANONICAL=A0A4X1VZE5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VZE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5/entry", "sequence": { "sequence": "MQGEPNPSASLIDRTIKMRKETEARKVVLAWGLLNVSMAGMIYTEMTGKLISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQTLLGLKTAVVQTTPPRDLAATQIPSSPPPSIQGQSVLSYSPSRSPSTSPKFTTSCITGYSPQLQGLSSGGSGSYSPGVTFSPVSGYNKLASYSPSPSSSYPTTVGPVESSGLRSRYRSSPTIYNSPTDKEDYMTDLRTLDTFLRNEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASITSLKQAALVKAPLIPTLNTIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCVYQSAINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 559, "header": "tr|A0A4X1VZE5-1|A0A4X1VZE5_PIG Isoform 1 of Transmembrane protein 209 OS=Sus scrofa OX=9823 GN=TMEM209 PE=4 SV=1 CANONICAL=A0A4X1VZE5-1" }, "locus": { "chromosome": "18", "start_pos": 18643316, "end_pos": 18616272, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026455.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026455.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026287.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026287.4" } ] } }, { "isoform_ac": "A0A4X1W0I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0I0/entry", "sequence": { "sequence": "TMQGEPNPSASLIDRTIKMRKETEARKVVLAWGLLNVSMAGMIYTEMTGKLISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQTLLGLKTAVVQTTPPRDLAATQIPSSPPPSIQGQSVLSYSPSRSPSTSPKFTTSCITGYSPQLQGLSSGGSGSYSPGVTFSPVSGYNKLASYSPSPSSSYPTTVGPVESSGLRSRYRSSPTIYNSPTDKEDYMTDLRTLDTFLRNEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCVYQSAINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 518, "header": "tr|A0A4X1W0I0-1|A0A4X1W0I0_PIG Computationally mapped isoform of Transmembrane protein 209 OS=Sus scrofa OX=9823 GN=TMEM209 PE=4 SV=1 CANONICAL=A0A4X1VZE5-1" }, "locus": { "chromosome": "18", "start_pos": 18643316, "end_pos": 18615382, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018033.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018033.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017547.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017547.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516476", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516476", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BBC2-1", "protein_name": "Transmembrane protein 209", "gene_name": "TMEM209", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWPDHPLPVVEGRKEAIGVAKMQGEPNPSASLIDRTIKMRRETEARKVVLAWGLLNVSMAGMIYTEMTGKLISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKCTVAATSLVVSPEQQTLLGLKTAVVQTTPPRDLAAAQIPPSPPSPSIQGQSVLSYSPSRSPSTSPKFTTSCITGYSPQLQGLSSGGSGSYSPGVTYSPISGYNKLASYSPSPPPPYPTTVGPVESSGLRSRYRSSPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQQRVKLGSPDSTSPPTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASITSLKQAALVKAPLIPTLNTIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 581 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1N9C5-1", "protein_name": "Transmembrane protein 209", "gene_name": "TMEM209", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTPEQSPATSLIDRTIKMRKETEARKVVLAWGLLNVSFAGMIYTEMTGKLISTYYNITYWPLWYIELAFASLFSLNALFDFWRYFKYTVAPTSLVMSPGQQTLLGLQNTAVQTTPPRELTAKKVPSSTPSPPIQGQSVLSYSPSRSPSASPKFATSCIPGYSPQLQALSNNSASYSSTIAYSPGSTYNKISNFSPSPGGSPYPTSIGPMESGGLRSRYRSSPILYNSPTGKEDYMTDLKSLDTFLRSEEEKQHRVQLGSSDSSSPSSSPTFWNYSRSMGDYAQILRKFQYQLACRSQAPSAHKDEADLSSKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQLRRMGCPELQIGEASISSLKQAALVKAPLIPTLNAIVQYLDLTPNQEYLVERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSSIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFIQTPDKPDTSNENVFCIYQSSINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNVLWIFGE", "length": 560 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6P528-1", "protein_name": "Transmembrane protein 209", "gene_name": "tmem209", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTPSKEGMTSLIERTIKLRKEEQARQVVLAWAVLNMSLAGMIYTEMSGKLLSRYYNITYWPIWYIELALASLFSLNALFDFWKYFKYTMAPSTIVVSPDQHRLLGLRGSGIQASPPQKQEKKEAPVSVQSSPLQGQNVLSFSPARPSSTSPKFSPSCVSGFSPPLSSTSSGGPFSPSMSFGKVLNYSPSQSSPPYPSSLGPAENTSLRSRYRTSPSVFNSPGGKEDCIDDLKTLEKFLRSEEEKSHRSQLGSPESTSPRHSPSFWNYNRTVGDYAQSLRKFQYQPACRSQAPSAHKDDTELGSKQAAEEVWARITTSRLVTDSIDSWTAKLRNWINDTILVHLVKEMDSINSQLRRMGCPELQIGEASISSLKQAAVVKASAIPTLNAIVQYLDVTPNQEYLVERIKELAHSGCMSSFRWNGGGDLKNRKWDTDLPTDSAILMHVLCTYLDSRLPPHPKYPDGKTFTSQHFMQTPNKPDVSNENLFCIHQSSTNPPHYQLVYQGHVYSLPKGRNNLFHTILMFLYIIKTKESGMLGRVNLGLSGVNVLWIFGD", "length": 553 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68FR5-1", "protein_name": "Transmembrane protein 209", "gene_name": "Tmem209", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMQGEVSPSPSLIDRTIRMRKETESRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQTLLGLKPAVVQTTPPRDLAATQISPSPPSPSIQGQSVLSYSPSRSPSTSPKFATSCMTGYSPQLQGLSSGGLGSYSPAVTYSPVSGYSKLASFSLSPSSPYPTTVGPVESSGLRARYRSPPTAYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLISKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWISETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVKAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRRWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCVYQSAINPPHYELIYQRHVYSLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 561 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BRG8-1", "protein_name": "Transmembrane protein 209", "gene_name": "Tmem209", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMQGDVSPNPSLIDRTIKMRKETETRKVVLAWGLLNVSMAGMIYTEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQALLGLKQAVVQTTPPRDLAATQISPSPPSPSIQGQSVLSYSPSRSPSTSPKFATSCMTGYSPQLQGLSSGGLGSYSPGVTYSPVSGYNKLASFSLSPSSPYPTTVGPVESSGLRARYRSPPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYSRSVGDYAQTLKKFQYQLACRSQAPCANKDEADLISKQAAEEVWARVTMNRQLLDHMDSWTAKFRNWISETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVRAPLIPTLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAVNPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 561 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96SK2-1", "protein_name": "Transmembrane protein 209", "gene_name": "TMEM209", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMQGEAHPSASLIDRTIKMRKETEARKVVLAWGLLNVSMAGMIYTEMTGKLISSYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQTLLGLKTAVVQTTPPHDLAATQIPPAPPSPSIQGQSVLSYSPSRSPSTSPKFTTSCMTGYSPQLQGLSSGGSGSYSPGVTYSPVSGYNKLASFSPSPPSPYPTTVGPVESSGLRSRYRSSPTVYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSSSPTFWNYSRSMGDYAQTLKKFQYQLACRSQAPCANKDEADLSSKQAAEEVWARVAMNRQLLDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGCPELQIGEASITSLKQAALVKAPLIPTLNTIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRKWDTDLPTDSAIIMHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCIYQSAINPPHYELIYQRHVYNLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE", "length": 561 }, "evidence": [ { "id": "A0A4X1VZE5", "url": "https://omabrowser.org/oma/group/A0A4X1VZE5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VZL2-1", "uniprot_ac": "A0A4X1VZL2", "uniprot_id": "A0A4X1VZL2_PIG", "mass": { "chemical_mass": 23138.0, "monoisotopic_mass": 23138.0 }, "refseq": {}, "gene_names": [ { "name": "KRTCAP2", "type": "recommended", "evidence": [ { "id": "A0A4X1VZL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2" } ] } ], "protein_names": [ { "name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2", "type": "recommended", "evidence": [ { "id": "A0A4X1VZL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2/entry#names_and_taxonomy" } ] }, { "name": "Keratinocyte-associated protein 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VZL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Subunit of STT3A-containing oligosaccharyl transferase (OST-A) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). Within the OST-A complex, acts as an adapter that anchors the OST-A complex to the Sec61 complex. May be involved in N-glycosylation of APP (amyloid-beta precursor protein). Can modulate gamma-secretase cleavage of APP by enhancing endoprotelysis of PSEN1.", "evidence": [ { "database": "UniProtKB", "id": "F1RGR7", "url": "https://www.uniprot.org/uniprotkb/F1RGR7#function" }, { "database": "UniProtKB", "id": "ARBA00053818", "url": "https://www.uniprot.org/uniprotkb/ARBA00053818#function" }, { "database": "UniProtKB", "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRTCAP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2", "locus": { "chromosome": "4", "start_pos": 94646436, "end_pos": 94642942, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006527", "url": "https://www.ensembl.org/id/ENSSSCG00000006527" } ] } } ], "crossref": [ { "id": "A0A4X1VZL2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VZL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006527", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006527", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR32001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32001:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32001:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGR7", "url": "https://www.uniprot.org/uniprotkb/F1RGR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGR7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRVRRRAGDQGGGQGCFCMNYFLPSGRGRCTQARRGRKRKTLGRSKSTFGADACAQPTVPGSALLSDRGANWTPGQGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQATAPVLTPAKVTGKGKKRN", "length": 215, "header": "tr|A0A4X1VZL2-1|A0A4X1VZL2_PIG Isoform 1 of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2 OS=Sus scrofa OX=9823 GN=KRTCAP2 PE=1 SV=1 CANONICAL=A0A4X1VZL2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VZL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2/entry", "sequence": { "sequence": "MLRVRRRAGDQGGGQGCFCMNYFLPSGRGRCTQARRGRKRKTLGRSKSTFGADACAQPTVPGSALLSDRGANWTPGQGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQATAPVLTPAKVTGKGKKRN", "length": 215, "header": "tr|A0A4X1VZL2-1|A0A4X1VZL2_PIG Isoform 1 of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2 OS=Sus scrofa OX=9823 GN=KRTCAP2 PE=1 SV=1 CANONICAL=A0A4X1VZL2-1" }, "locus": { "chromosome": "4", "start_pos": 94646401, "end_pos": 94643141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054788.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054788.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047498.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047498.2" } ] } }, { "isoform_ac": "F1RGR7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGR7/entry", "sequence": { "sequence": "MVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTEVPGWLHAIEAMIFPSPCSFIFSMVGLYYINKISSTLYQATAPVLTPAKVTGKGKKRN", "length": 111, "header": "tr|F1RGR7-1|F1RGR7_PIG Computationally mapped isoform of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2 OS=Sus scrofa OX=9823 GN=KRTCAP2 PE=1 SV=3 CANONICAL=A0A4X1VZL2-1" }, "locus": { "chromosome": "4", "start_pos": 94646401, "end_pos": 94643378, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007149.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007149.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006956.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006956.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W0H9-1", "uniprot_ac": "A0A4X1W0H9", "uniprot_id": "A0A4X1W0H9_PIG", "mass": { "chemical_mass": 26174.0, "monoisotopic_mass": 26174.0 }, "refseq": { "ac": "NP_001231212", "name": "complement C1q subcomponent subunit B precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212" }, "gene_names": [ { "name": "C1QB", "type": "recommended", "evidence": [ { "id": "A0A4X1W0H9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ] }, { "name": "C1QB", "type": "synonym", "evidence": [ { "id": "NP_001231212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212" } ] } ], "protein_names": [ { "name": "Complement C1q B chain", "type": "synonym", "evidence": [ { "id": "A0A4X1W0H9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9/entry#names_and_taxonomy" } ] }, { "name": "complement C1q subcomponent subunit B precursor", "type": "synonym", "evidence": [ { "id": "NP_001231212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212" } ] }, { "name": "complement C1q subcomponent subunit B", "type": "synonym", "evidence": [ { "id": "NP_001231212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212" } ] }, { "name": "complement C1qB", "type": "synonym", "evidence": [ { "id": "NP_001231212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1QB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9", "locus": { "chromosome": "6", "start_pos": 80607471, "end_pos": 80601665, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033512", "url": "https://www.ensembl.org/id/ENSSSCG00000033512" } ] } } ], "crossref": [ { "id": "A0A4X1W0H9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W0H9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033512", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033512", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518846", "url": "https://www.ncbi.nlm.nih.gov/gene/100518846", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518846", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518846", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WAMLICL", "url": "https://omabrowser.org/oma/group/WAMLICL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W0H9", "url": "https://www.orthodb.org/?gene=A0A4X1W0H9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231212", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231212", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTLRGSVPALLPLLLLNLLHVSQAQVFCMPGIPGIPGIPGPDGIPGTPGIKGEKGLPGQVRDHNEVGEKGDPGIPGIPGKVGPKGPIGPKGTPGPPGARGPKGESGDYKATQKIAFSAKRTINTHLRPDQAIRFDQVITNANENYESRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGREQVRKVVTFCDQVQNTFQVTTGSIVLKLEVEETVFLQATEKSSLLGIDGANTIFSGFLLFPDAEA", "length": 246, "header": "tr|A0A4X1W0H9-1|A0A4X1W0H9_PIG Isoform 1 of Complement C1q B chain OS=Sus scrofa OX=9823 GN=C1QB PE=1 SV=1 CANONICAL=A0A4X1W0H9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W0H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9/entry", "sequence": { "sequence": "MKTLRGSVPALLPLLLLNLLHVSQAQVFCMPGIPGIPGIPGPDGIPGTPGIKGEKGLPGQVRDHNEVGEKGDPGIPGIPGKVGPKGPIGPKGTPGPPGARGPKGESGDYKATQKIAFSAKRTINTHLRPDQAIRFDQVITNANENYESRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGREQVRKVVTFCDQVQNTFQVTTGSIVLKLEVEETVFLQATEKSSLLGIDGANTIFSGFLLFPDAEA", "length": 246, "header": "tr|A0A4X1W0H9-1|A0A4X1W0H9_PIG Isoform 1 of Complement C1q B chain OS=Sus scrofa OX=9823 GN=C1QB PE=1 SV=1 CANONICAL=A0A4X1W0H9-1" }, "locus": { "chromosome": "6", "start_pos": 80605929, "end_pos": 80604345, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064269.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064269.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031897.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031897.1" } ] } }, { "isoform_ac": "A0A5G2QLJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ8/entry", "sequence": { "sequence": "RGRGPSGEGPSRLSGEWNFRFGLRAAGSWLPVPLLPSPATSQDIRFPGLPGQVRDHNEVGEKGDPGIPGIPGKVGPKGPIGPKGTPGPPGARGPKGESGDYKATQKIAFSAKRTINTHLRPDQAIRFDQVITNANENYESRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGREQVRKVVTFCDQVQNTFQVTTGSIVLKLEVEETVFLQATEKSSLLGIDGANTIFSGFLLFPDAEA", "length": 238, "header": "tr|A0A5G2QLJ8-1|A0A5G2QLJ8_PIG Computationally mapped isoform of Complement C1q B chain OS=Sus scrofa OX=9823 GN=C1QB PE=1 SV=1 CANONICAL=A0A4X1W0H9-1" }, "locus": { "chromosome": "6", "start_pos": 80605929, "end_pos": 80601666, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074878.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074878.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065716.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065716.1" } ] } }, { "isoform_ac": "A0A5G2QNN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNN2/entry", "sequence": { "sequence": "MSPRPRSSACLASRVSQGYRALMAYLGPRGSRERKASVPITVKHVPDLESRAGRRLRGHPILLFTWALGPGAKQGPVQGDSLPPSPSWFLAISGPLTSLVSTFPGLPGQVRDHNEVGEKGDPGIPGIPGKVGPKGPIGPKGTPGPPGARGPKGESGDYKATQKIAFSAKRTINTHLRPDQAIRFDQVITNANENYESRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGREQVRKVVTFCDQVQNTFQVTTGSIVLKLEVEETVFLQATEKSSLLGIDGANTIFSGFLLFPDAEA", "length": 295, "header": "tr|A0A5G2QNN2-1|A0A5G2QNN2_PIG Computationally mapped isoform of Complement C1q B chain OS=Sus scrofa OX=9823 GN=C1QB PE=1 SV=1 CANONICAL=A0A4X1W0H9-1" }, "locus": { "chromosome": "6", "start_pos": 80605929, "end_pos": 80604406, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084461.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084461.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063693.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063693.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 48, "start_aa": "Thr", "end_pos": 48, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr48", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518846", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518846", "resource": "KEGG Pathway" }, { "id": "R-SSC-173623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "resource": "Reactome", "description": "Classical antibody-mediated complement activation" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NH19-1", "protein_name": "Complement C1q B chain", "gene_name": "C1QB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQTVWVVLICLAGGQLASATLCKTYGTIPGIPGSPGQPGTNGRDGKNGPKGEQGPPGLVEHEQDMGEKGDPGEPGYPGKVGPRGLPGSKGLPGPMGPPGPRGDTGDYKVTLKSAFSAARTFSSFPRRDYPIRFDRIITNENRHYENRYGRFTCQVPGVYYFTYHVTSKGSLCLRMKKGRGGSRDEKVVTFCDYVQNSYQVTTGGVVLRLAANESVWLEPTEKNSIMGIEGADSIFSGFLIFPEV", "length": 244 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HIN3-1", "protein_name": "Complement C1q subcomponent subunit B", "gene_name": "C1qb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKTWGYMVSTPLLLLFLGLLHVSWAQSSCTGPPRIPGIPGIPGVPGSDGQPGTPGIKGEKGLPGLAGDHGEFGEKGDPGTPGIPGKVGPKGPVGPKGAPGPPGARGPKGDSGDYKATQKVAFSALRTINSPLRRDQAIRFEKAIINMNENYEPRSGKFTCKVPGLYYFTYHASSRGNLCMNLVRGRDRERMQKVLTFCDYAQNTFQVTTGGVVLKLEQDEVVHLQATDKNSLLGLEGANSIFTGFLLFPDMDA", "length": 253 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P02746-1", "protein_name": "Complement C1q subcomponent subunit B", "gene_name": "C1QB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMMKIPWGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPGIKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYKATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPDMEA", "length": 253 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P14106-1", "protein_name": "Complement C1q subcomponent subunit B", "gene_name": "C1qb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTQWGEVWTHLLLLLLGFLHVSWAQSSCTGPPGIPGIPGVPGVPGSDGQPGTPGIKGEKGLPGLAGDLGEFGEKGDPGIPGTPGKVGPKGPVGPKGTPGPSGPRGPKGDSGDYGATQKVAFSALRTINSPLRPNQVIRFEKVITNANENYEPRNGKFTCKVPGLYYFTYHASSRGNLCVNLVRGRDRDSMQKVVTFCDYAQNTFQVTTGGVVLKLEQEEVVHLQATDKNSLLGIEGANSIFTGFLLFPDMDA", "length": 253 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P31721-1", "protein_name": "Complement C1q subcomponent subunit B", "gene_name": "C1qb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTQWSEILTPLLLLLLGLLHVSWAQSSCTGSPGIPGVPGIPGVPGSDGKPGTPGIKGEKGLPGLAGDHGELGEKGDAGIPGIPGKVGPKGPVGPKGAPGPPGPRGPKGGSGDYKATQKVAFSALRTVNSALRPNQAIRFEKVITNVNDNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNIVRGRDRDRMQKVLTFCDYAQNTFQVTTGGVVLKLEQEEVVHLQATDKNSLLGVEGANSIFTGFLLFPDMDV", "length": 253 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KIV9-1", "protein_name": "Complement C1q subcomponent subunit B", "gene_name": "C1QB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKTPRGSVLVLLLLNLLRVSWAQSNCIRPSIPGIPGIPGKPGSDGKPGTPGTKGEKGLPGLVSHLNENGEKGDPGFPGMPGKVGPKGPIGPKGVPGPPGVRGPKGESGDYKATQKIAFSASRTINHHQRQGQPIRFDHVITNANENYQARSSKFTCKVPGLYFFTYHASSRGQLCVDLMRGRAEPQKVVTFCDYVQNTFQVTTGSIVLKLEKDETVFLQATEKNALVGIEGANSIFSGFMLFPDTEA", "length": 247 }, "evidence": [ { "id": "A0A4X1W0H9", "url": "https://omabrowser.org/oma/group/A0A4X1W0H9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" }, { "name": "extrinsic component of presynaptic membrane", "id": "GO:0098888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098888", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" }, { "name": "extrinsic component of postsynaptic membrane", "id": "GO:0098890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098890", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "synapse pruning", "id": "GO:0098883", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098883", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0H9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W0H9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0H9" }, { "id": "PS50871", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50871" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C1q", "eco_id": "ECO_0000259", "start_pos": 110, "end_pos": 246, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 48 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W0L2-1", "uniprot_ac": "A0A4X1W0L2", "uniprot_id": "A0A4X1W0L2_PIG", "mass": { "chemical_mass": 8555.0, "monoisotopic_mass": 8555.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W0L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0L2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2", "locus": {} } ], "crossref": [ { "id": "A0A4X1W0L2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSTPSLSPPDLNMKGQRKDTEEFVVLSDTRENPSDGTGWQRQRESPGAQGSWRSPFQRALPCFPKSFGGGDQTLRN", "length": 77, "header": "tr|A0A4X1W0L2-1|A0A4X1W0L2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W0L2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W0L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2/entry", "sequence": { "sequence": "MTSTPSLSPPDLNMKGQRKDTEEFVVLSDTRENPSDGTGWQRQRESPGAQGSWRSPFQRALPCFPKSFGGGDQTLRN", "length": 77, "header": "tr|A0A4X1W0L2-1|A0A4X1W0L2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W0L2-1" }, "locus": { "chromosome": "X", "start_pos": 58670635, "end_pos": 58670000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097207.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097207.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081089.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081089.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0L2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0L2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W1Z0-1", "uniprot_ac": "A0A4X1W1Z0", "uniprot_id": "A0A4X1W1Z0_PIG", "mass": { "chemical_mass": 25487.0, "monoisotopic_mass": 25487.0 }, "refseq": { "ac": "XP_003135235", "name": "cysteine-rich hydrophobic domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135235" }, "gene_names": [ { "name": "CHIC1", "type": "recommended", "evidence": [ { "id": "A0A4X1W1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0" } ] }, { "name": "CHIC1", "type": "synonym", "evidence": [ { "id": "XP_003135235", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135235" } ] } ], "protein_names": [ { "name": "Cysteine rich hydrophobic domain 1", "type": "synonym", "evidence": [ { "id": "A0A4X1W1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0/entry#names_and_taxonomy" } ] }, { "name": "cysteine-rich hydrophobic domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003135235", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135235" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0", "locus": { "chromosome": "X", "start_pos": 59230783, "end_pos": 59176604, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012416", "url": "https://www.ensembl.org/id/ENSSSCG00000012416" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012416", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012416", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100526199", "url": "https://www.ncbi.nlm.nih.gov/gene/100526199", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526199", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526199", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYSMTEY", "url": "https://omabrowser.org/oma/group/NYSMTEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W1Z0", "url": "https://www.orthodb.org/?gene=A0A4X1W1Z0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13005", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13005", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13005:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13005:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003135235", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135235", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W1D4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQB7", "url": "https://www.uniprot.org/uniprotkb/K7GQB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQB7-1", "url": "https://www.uniprot.org/uniprotkb/K7GQB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEVEETPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD", "length": 223, "header": "tr|A0A4X1W1Z0-1|A0A4X1W1Z0_PIG Isoform 1 of Cysteine rich hydrophobic domain 1 OS=Sus scrofa OX=9823 GN=CHIC1 PE=4 SV=1 CANONICAL=A0A4X1W1Z0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W1D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1D4/entry", "sequence": { "sequence": "MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEVEETPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKVILIEFLPKYPIFRPD", "length": 203, "header": "tr|A0A4X1W1D4-1|A0A4X1W1Z0_PIG Computationally mapped isoform of Cysteine rich hydrophobic domain 1 OS=Sus scrofa OX=9823 GN=CHIC1 PE=4 SV=1 CANONICAL=A0A4X1W1Z0-1" }, "locus": { "chromosome": "X", "start_pos": 59224232, "end_pos": 59176803, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089152.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089152.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073379.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073379.1" } ] } }, { "isoform_ac": "A0A4X1W1Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0/entry", "sequence": { "sequence": "MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEVEETPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD", "length": 223, "header": "tr|A0A4X1W1Z0-1|A0A4X1W1Z0_PIG Isoform 1 of Cysteine rich hydrophobic domain 1 OS=Sus scrofa OX=9823 GN=CHIC1 PE=4 SV=1 CANONICAL=A0A4X1W1Z0-1" }, "locus": { "chromosome": "X", "start_pos": 59224232, "end_pos": 59176803, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099963.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099963.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075568.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075568.1" } ] } }, { "isoform_ac": "K7GQB7-1", "url": "https://www.uniprot.org/uniprotkb/K7GQB7/entry", "sequence": { "sequence": "MAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEVEETPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD", "length": 203, "header": "tr|K7GQB7-1|K7GQB7_PIG Computationally mapped isoform of Cysteine rich hydrophobic domain 1 OS=Sus scrofa OX=9823 GN=CHIC1 PE=4 SV=3 CANONICAL=A0A4X1W1Z0-1" }, "locus": { "chromosome": "X", "start_pos": 59224232, "end_pos": 59176824, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034312.3", "url": "https://www.ensembl.org/id/ENSSSCT00000034312.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030085.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030085.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1D4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1D4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526199", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526199", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0R125-1", "protein_name": "Cysteine-rich hydrophobic domain-containing protein 1", "gene_name": "chic1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVLLPNMADFDTIYELEEEDERIVSEEHLVRYCPEPVVMRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSINRVNACLKKNLPVNVKWLLCGCLCCCCTVGCSLWPVICLNKRTRRSIQKLLEWENNRLYHKLGLHWKLSKRKCESNNMMEYVILIEFLPKYPIFRPD", "length": 173 }, "evidence": [ { "id": "A0A4X1W1Z0", "url": "https://omabrowser.org/oma/group/A0A4X1W1Z0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0KI06-1", "protein_name": "Golgin subfamily A member 7/ERF4 domain-containing protein", "gene_name": "Dmel\\CG5938", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSFSDFDAIYEDEQLDELEHFQDQTVAPVQEPIIIRGAGNMTVFGLSNRFNAEFPCGLLSRVAPEEFKATVGRINGVLKKSLPVNVKWLFCGCVCCCCTLGCSLWPVICLSKRTQLTLDKLFEWENNHLYHKLGLHWRLHKQQCDSNSMMEYVILIEFIPKTPIYRPD", "length": 168 }, "evidence": [ { "id": "A0A4X1W1Z0", "url": "https://omabrowser.org/oma/group/A0A4X1W1Z0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5VXU3-1", "protein_name": "Cysteine-rich hydrophobic domain-containing protein 1", "gene_name": "CHIC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSILLPNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRYAPDPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEWENNRLYHKLALHWKLTKRKCETSNMMEYVILIEFLPKYPIFRPD", "length": 224 }, "evidence": [ { "id": "A0A4X1W1Z0", "url": "https://omabrowser.org/oma/group/A0A4X1W1Z0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1Z0" }, { "id": "PF10256", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10256" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgin subfamily A member 7/ERF4", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 192, "start_aa": "Asn", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W1M6-1", "uniprot_ac": "A0A4X1W1M6", "uniprot_id": "A0A4X1W1M6_PIG", "mass": { "chemical_mass": 58580.0, "monoisotopic_mass": 58580.0 }, "refseq": {}, "gene_names": [ { "name": "CNOT2", "type": "recommended", "evidence": [ { "id": "A0A4X1W1M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ] } ], "protein_names": [ { "name": "CCR4-NOT transcription complex subunit 2", "type": "recommended", "evidence": [ { "id": "A0A4X1W1M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6/entry#names_and_taxonomy" } ] }, { "name": "CCR4-associated factor 2", "type": "synonym", "evidence": [ { "id": "A0A4X1W1M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNOT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6", "locus": { "chromosome": "5", "start_pos": 34549310, "end_pos": 34426394, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000502", "url": "https://www.ensembl.org/id/ENSSSCG00000000502" } ] } } ], "crossref": [ { "id": "A0A4X1W1M6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W1M6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000502", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000502", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23326", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23326", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-429947", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804115", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZPB3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B339", "url": "https://www.uniprot.org/uniprotkb/A0A287B339", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B339-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B339-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPSRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF", "length": 531, "header": "tr|A0A4X1W1M6-1|A0A4X1W1M6_PIG Isoform 1 of CCR4-NOT transcription complex subunit 2 OS=Sus scrofa OX=9823 GN=CNOT2 PE=3 SV=1 CANONICAL=A0A4X1W1M6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPB3/entry", "sequence": { "sequence": "MRTVRKGHDSMVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPSRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF", "length": 550, "header": "tr|A0A286ZPB3-1|A0A286ZPB3_PIG Computationally mapped isoform of CCR4-NOT transcription complex subunit 2 OS=Sus scrofa OX=9823 GN=CNOT2 PE=3 SV=1 CANONICAL=A0A4X1W1M6-1" }, "locus": { "chromosome": "5", "start_pos": 34548250, "end_pos": 34426801, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046336.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046336.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033319.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033319.2" } ] } }, { "isoform_ac": "A0A287B339-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B339/entry", "sequence": { "sequence": "MRTVRKGHDSMVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF", "length": 413, "header": "tr|A0A287B339-1|A0A287B339_PIG Computationally mapped isoform of CCR4-NOT transcription complex subunit 2 OS=Sus scrofa OX=9823 GN=CNOT2 PE=3 SV=3 CANONICAL=A0A4X1W1M6-1" }, "locus": { "chromosome": "5", "start_pos": 34548250, "end_pos": 34426801, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061741.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061741.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050680.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050680.3" } ] } }, { "isoform_ac": "A0A4X1W1M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6/entry", "sequence": { "sequence": "MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPSRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF", "length": 531, "header": "tr|A0A4X1W1M6-1|A0A4X1W1M6_PIG Isoform 1 of CCR4-NOT transcription complex subunit 2 OS=Sus scrofa OX=9823 GN=CNOT2 PE=3 SV=1 CANONICAL=A0A4X1W1M6-1" }, "locus": { "chromosome": "5", "start_pos": 34548250, "end_pos": 34492243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064126.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064126.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053498.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053498.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-429947", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "resource": "Reactome", "description": "Deadenylation of mRNA" }, { "id": "R-SSC-6804115", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "resource": "Reactome", "description": "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "CCR4-NOT core complex", "id": "GO:0030015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "regulation of stem cell population maintenance", "id": "GO:2000036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000036", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "trophectodermal cell differentiation", "id": "GO:0001829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "positive regulation of cytoplasmic mRNA processing body assembly", "id": "GO:0010606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010606", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "negative regulation of intracellular estrogen receptor signaling pathway", "id": "GO:0033147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033147", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA poly(A) tail shortening", "id": "GO:0000289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000289", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "poly(A)-specific ribonuclease activity", "id": "GO:0004535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004535", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" }, { "name": "transcription corepressor binding", "id": "GO:0001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001222", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1M6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W1M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1M6" }, { "id": "PF04153", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04153" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NOT2/NOT3/NOT5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 388, "end_pos": 512, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 104 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 212, "end_pos": 214 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 82, "end_pos": 84 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W1S2-1", "uniprot_ac": "A0A4X1W1S2", "uniprot_id": "A0A4X1W1S2_PIG", "mass": { "chemical_mass": 103634.0, "monoisotopic_mass": 103634.0 }, "refseq": { "ac": "XP_020942857", "name": "testis-specific gene 10 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942857" }, "gene_names": [ { "name": "TSGA10", "type": "recommended", "evidence": [ { "id": "A0A4X1W1S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ] }, { "name": "TSGA10", "type": "synonym", "evidence": [ { "id": "XP_020942857", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942857" } ] } ], "protein_names": [ { "name": "Testis specific 10", "type": "synonym", "evidence": [ { "id": "A0A4X1W1S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2/entry#names_and_taxonomy" } ] }, { "name": "testis-specific gene 10 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020942857", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942857" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSGA10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2", "locus": { "chromosome": "3", "start_pos": 55321236, "end_pos": 55198218, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008186", "url": "https://www.ensembl.org/id/ENSSSCG00000008186" } ] } } ], "crossref": [ { "id": "A0A4X1W1S2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W1S2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008186", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008186", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523898", "url": "https://www.ncbi.nlm.nih.gov/gene/100523898", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523898", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523898", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W1S2", "url": "https://www.orthodb.org/?gene=A0A4X1W1S2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20544:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20544:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020942857", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942857", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AL83", "url": "https://www.uniprot.org/uniprotkb/A0A287AL83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL83-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5P4", "url": "https://www.uniprot.org/uniprotkb/A0A287B5P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5P4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGEDGGPRSPGRDPQPQVTTKEHDFGLGAPVSEAEKYQNILQLKQEVRNQDKFISTLKLQIEDLKQTNHVLEEYVRKLLDSKEVVSSQVNDLTSYNEHLCQELIKIDQLAEQLEKEKKFVVDTADKELEEAKIEVICQQNNIIVLEDTIKRLRSIILETEKAQNKSPSRLDSFVKTLEADRDYYKREAFKLRKMIRSRSKSPRRPSPSSRGTNCDVELLKTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRLEMMKSCKSPKSTTAQAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKDTITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEINILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILALETDSLQEQFSKAKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQMMDQLRKANEDAENWENKARQAEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSVVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDAARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHLSSTIKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF", "length": 892, "header": "tr|A0A4X1W1S2-1|A0A4X1W1S2_PIG Isoform 1 of Testis specific 10 OS=Sus scrofa OX=9823 GN=TSGA10 PE=3 SV=1 CANONICAL=A0A4X1W1S2-1" }, "isoforms": [ { "isoform_ac": "A0A287AL83-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL83/entry", "sequence": { "sequence": "MSSGEDGGPRSPGRDPQPQVTTKEHDFGLGAPVSEAEKYQNILQLKQEVRNQDKFISTLKLQIEVICQQNNIIVLEDTIKRLRSIILETEKAQNKSPSRLDSFVKTLEADRDYYKREAFKLRKMIRSRSKSPRRPSPSSRGTNCDVELLKTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRLEMMKSCKSPKSTTAQAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKDTITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEINILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILALETDSLQEQFSKAKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQMMDQLRKANEDAENWENKARQAEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSVVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDAARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHLSSTIKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF", "length": 820, "header": "tr|A0A287AL83-1|A0A287AL83_PIG Computationally mapped isoform of Testis specific 10 OS=Sus scrofa OX=9823 GN=TSGA10 PE=3 SV=1 CANONICAL=A0A4X1W1S2-1" }, "locus": { "chromosome": "3", "start_pos": 55319315, "end_pos": 55198492, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066153.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066153.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044670.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044670.2" } ] } }, { "isoform_ac": "A0A287B5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5P4/entry", "sequence": { "sequence": "GLGARGTDGGPRSPGRDPQPQVTTKEHDFGLGAPVSEAEKYQNILQLKQEVRNQDKFISTLKLQIEDLKQTNHVLEEYVRKLLDSKEVVSSQVNDLTSYNEHLCQELIKIDQLAEQLEKEKKFVVDTADKELEEAKIEVICQQNNIIVLEDTIKRLRSIILETEKAQNKSPSRLDSFVKTLEADRDYYKREAFKLRKMIRSRSKSPRRPSPSSRGTNCDVELLKTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRLEMMKSCKSPKSTTAQAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNVKKNYFYTFGYKLSMASPLPPFLFSEKLFFKIVFVILR", "length": 387, "header": "tr|A0A287B5P4-1|A0A287B5P4_PIG Computationally mapped isoform of Testis specific 10 OS=Sus scrofa OX=9823 GN=TSGA10 PE=3 SV=2 CANONICAL=A0A4X1W1S2-1" }, "locus": { "chromosome": "3", "start_pos": 55233445, "end_pos": 55198220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056012.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056012.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051774.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051774.2" } ] } }, { "isoform_ac": "A0A4X1W1S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2/entry", "sequence": { "sequence": "MSSGEDGGPRSPGRDPQPQVTTKEHDFGLGAPVSEAEKYQNILQLKQEVRNQDKFISTLKLQIEDLKQTNHVLEEYVRKLLDSKEVVSSQVNDLTSYNEHLCQELIKIDQLAEQLEKEKKFVVDTADKELEEAKIEVICQQNNIIVLEDTIKRLRSIILETEKAQNKSPSRLDSFVKTLEADRDYYKREAFKLRKMIRSRSKSPRRPSPSSRGTNCDVELLKTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRLEMMKSCKSPKSTTAQAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKDTITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQSIAQREEINILGATLNDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILALETDSLQEQFSKAKQENQALSKKLNDTHNELSDIKQKVQDTNLEVNKLKNILKSEESENRQMMDQLRKANEDAENWENKARQAEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIATLHKSVVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDAARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQNYSSNAYHLSSTIKPNTKCHSPERAHHRSPDRGLDRSLEENLCYRDF", "length": 892, "header": "tr|A0A4X1W1S2-1|A0A4X1W1S2_PIG Isoform 1 of Testis specific 10 OS=Sus scrofa OX=9823 GN=TSGA10 PE=3 SV=1 CANONICAL=A0A4X1W1S2-1" }, "locus": { "chromosome": "3", "start_pos": 55319315, "end_pos": 55198492, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008965.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008965.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008739.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008739.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523898", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523898", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" }, { "name": "sperm fibrous sheath", "id": "GO:0035686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035686", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1S2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 846, "end_pos": 848, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 166, "end_pos": 168 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 438, "end_pos": 440 }, { "start_pos": 570, "end_pos": 572 }, { "start_pos": 632, "end_pos": 634 }, { "start_pos": 846, "end_pos": 848 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W206-1", "uniprot_ac": "A0A4X1W206", "uniprot_id": "A0A4X1W206_PIG", "mass": { "chemical_mass": 41868.0, "monoisotopic_mass": 41868.0 }, "refseq": {}, "gene_names": [ { "name": "ACTRT1", "type": "recommended", "evidence": [ { "id": "A0A4X1W206", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ] } ], "protein_names": [ { "name": "Actin related protein T1", "type": "synonym", "evidence": [ { "id": "A0A4X1W206", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTRT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206", "locus": { "chromosome": "X", "start_pos": 104937348, "end_pos": 104938481, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012648", "url": "https://www.ensembl.org/id/ENSSSCG00000012648" } ] } } ], "crossref": [ { "id": "A0A4X1W206", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W206", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13397", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13397", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RWFSAWI", "url": "https://omabrowser.org/oma/group/RWFSAWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W206", "url": "https://www.orthodb.org/?gene=A0A4X1W206", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W206-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNPYALNAPAVIFDNGSGLCKVGLSGEIGPRHVISSVVGHPKFNLASSEVNQKNYLVGEKALYKYEALHLHYPIERGLVTRWDDMEKLWKYLFEWELGVKPCQQPVLMTEPSLNPRESREKTAEVMFETFNVPAFYLANHAVVALYASASVTGLVADSGDGITCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASGCNYPCILNKALVDDIKETLCYVALEPEKELCKKPEDVLREYKLPDGNVIQLADQLFQVPEILFAPDQLGIHNPGLSKMVSSSITKCDTDIQKNLFAEIVLSGGTTLFPGLEERLMKELEQLASRGTPIKITASPDRCFSAWIGASIVTSLSSFKQMWITSADFMEFGSYVVQRRCF", "length": 377, "header": "tr|A0A4X1W206-1|A0A4X1W206_PIG Isoform 1 of Actin related protein T1 OS=Sus scrofa OX=9823 GN=ACTRT1 PE=3 SV=1 CANONICAL=A0A4X1W206-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W206-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206/entry", "sequence": { "sequence": "MSNPYALNAPAVIFDNGSGLCKVGLSGEIGPRHVISSVVGHPKFNLASSEVNQKNYLVGEKALYKYEALHLHYPIERGLVTRWDDMEKLWKYLFEWELGVKPCQQPVLMTEPSLNPRESREKTAEVMFETFNVPAFYLANHAVVALYASASVTGLVADSGDGITCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASGCNYPCILNKALVDDIKETLCYVALEPEKELCKKPEDVLREYKLPDGNVIQLADQLFQVPEILFAPDQLGIHNPGLSKMVSSSITKCDTDIQKNLFAEIVLSGGTTLFPGLEERLMKELEQLASRGTPIKITASPDRCFSAWIGASIVTSLSSFKQMWITSADFMEFGSYVVQRRCF", "length": 377, "header": "tr|A0A4X1W206-1|A0A4X1W206_PIG Isoform 1 of Actin related protein T1 OS=Sus scrofa OX=9823 GN=ACTRT1 PE=3 SV=1 CANONICAL=A0A4X1W206-1" }, "locus": { "chromosome": "X", "start_pos": 104938481, "end_pos": 104937351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013829.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013829.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013447.1", "url": "https://www.ensembl.org/id/ENSSSCP00000013447.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061I018-1", "protein_name": "Actin-related protein T1", "gene_name": "Actrt1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFSQAVLDTPAVIFDNGSGLCKVGISGELGPRHVISSVVGHPKFNIPSARTNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPSEQPVFMTEPSLNPRETREKTTEIMFEKFNVPALYLCNHAVGALCASACITGLVVDSGDGVTCTVPIYEGYALSHAITKLYVAGRDITEHLTRLLLAKGYTFPCILNKAVVDDIKEKLCSVSWGQEDTRKNCQQALTEYQLPDGNVIQMSDHLCRVPEVLFTPDNLGIHDLGISKMACSSIMKCDTDIQETLFADIVLSGGTTLFPGLQDRLLRELEVLAFEGTPIKITASPDRCYSSWIGGSVMTSLTTFKQMWVTAEDFKEYGAFVVQRKCF", "length": 376 }, "evidence": [ { "id": "A0A4X1W206", "url": "https://omabrowser.org/oma/group/A0A4X1W206/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5XIK1-1", "protein_name": "Actin-related protein T1", "gene_name": "Actrt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLNTARLDNPAVIFDNGSGLCKVGISGEIVPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPRETREKTTEIMFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPIYEGYSLPRAITKLYVAGRDITEHLTRLLLAKGYTFPCILNKAVVDDIKEKLCTVSWGSKDSEKCYQRSLSEYKLPDGNTIQMSDHLCQVPEVLFTPEHLGIHDLGISKMVCNSIMKCDTDIQENLFAEIVLSGGTTLFPGLQDRLLKELEVLAFEGTPIKITASPDRCYSAWIGGSVMTSLTTFKQMWVTAEDFKEYGAFVVQRKCF", "length": 376 }, "evidence": [ { "id": "A0A4X1W206", "url": "https://omabrowser.org/oma/group/A0A4X1W206/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8TDG2-1", "protein_name": "Actin-related protein T1", "gene_name": "ACTRT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFNPHALDVPAVIFDNGSGLCKAGLSGEIGPRHVISSVLGHCKFNVPLARLNQKYFVGQEALYKYEALHLHYPIERGLVTGWDDMEKLWKHLFERELGVKPSQQPVLMTEPSLNPREIREKLAEMMFETFSVPGFYLSNHAVAALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLCMAGRDITEHLTRLLFASGFNFPCILNKAVVNNIKEKLCYIALEPEKELRKSRGEVLGAYRLPDGHVIHFGDELYQVPEVLFAPDQLGIHSPGLSKMVSSSIMKCDTDIQNKLYADIVLSGGTTLLPGLEERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF", "length": 376 }, "evidence": [ { "id": "A0A4X1W206", "url": "https://omabrowser.org/oma/group/A0A4X1W206/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9J3-1", "protein_name": "Actin-related protein T1", "gene_name": "Actrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLDPARLDNPAVIFDNGSGLCKVGISGEIEPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPQETREKTTEIMFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPVYEGYSLPHAITKLYVAGRDITEHLTRLLLAKGYTFPCILNKAVVDDIKEKLCTVSLGYKDTEKNCQQFLRKYTLPDGNTIQMSDHLCQVPEVLFTPDHLGIHDLGISKMVCNSIMNCDTDIQENLFAEIVLSGGTTMFPGLQDRLLKELEDLAFEGTPIKITASSDRCYSAWIGGSVMTSMTTFKQMWVTAEDFKEYGAFVVQRKCF", "length": 376 }, "evidence": [ { "id": "A0A4X1W206", "url": "https://omabrowser.org/oma/group/A0A4X1W206/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" }, { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" }, { "name": "regulation of smoothened signaling pathway", "id": "GO:0008589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008589", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W206", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W206" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W2Q2-1", "uniprot_ac": "A0A4X1W2Q2", "uniprot_id": "A0A4X1W2Q2_PIG", "mass": { "chemical_mass": 44894.0, "monoisotopic_mass": 44894.0 }, "refseq": { "ac": "NP_001422272", "name": "tuftelin isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422272" }, "gene_names": [ { "name": "TUFT1", "type": "recommended", "evidence": [ { "id": "A0A4X1W2Q2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ] }, { "name": "TUFT1", "type": "synonym", "evidence": [ { "id": "NP_001422272", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422272" } ] } ], "protein_names": [ { "name": "Tuftelin 1", "type": "synonym", "evidence": [ { "id": "A0A4X1W2Q2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2/entry#names_and_taxonomy" } ] }, { "name": "tuftelin isoform 1", "type": "synonym", "evidence": [ { "id": "NP_001422272", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422272" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TUFT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2", "locus": { "chromosome": "4", "start_pos": 97648818, "end_pos": 97703592, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006620", "url": "https://www.ensembl.org/id/ENSSSCG00000006620" } ] } } ], "crossref": [ { "id": "A0A4X1W2Q2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W2Q2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006620", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006620", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HMEHFLA", "url": "https://omabrowser.org/oma/group/HMEHFLA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W2Q2", "url": "https://www.orthodb.org/?gene=A0A4X1W2Q2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23171:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23171:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001422272", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422272", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BPU7", "url": "https://www.uniprot.org/uniprotkb/A0A287BPU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W2Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMNGTRSWCTLVDVHPEAQTSGSVDILRLTLQSELTGDELERIAQKAGRKTYAMVSGRSTGHSLASELVESNDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNSLQKLREDISSKLDKDPGASLHQQEIQVVLEKPNGFSSSPSTPPPPPNSRTPEVDTFVNEDVESLRKTVQDLLVQLQEAERQHQSERVDFEATLSRYQREAEQSHVALQRAEDRVEQKEAEVEELQKRLLGMETEHQALLAKVREGETALEELRGKNSDCRAEQEKAANLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQSKDTAIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQNRAKTENPGSVRISKPPSPKPMPLIRVVET", "length": 395, "header": "tr|A0A4X1W2Q2-1|A0A4X1W2Q2_PIG Isoform 1 of Tuftelin 1 OS=Sus scrofa OX=9823 GN=TUFT1 PE=4 SV=1 CANONICAL=A0A4X1W2Q2-1" }, "isoforms": [ { "isoform_ac": "A0A287BPU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPU7/entry", "sequence": { "sequence": "MMNGTRSWCTLVDVHPEAQTSAGRKTYAMVSGRSTGHSLASELVESNDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNSLQKLREDISSKLDKDPGASLHQQEIQVDTFVNEDVESLRKTVQDLLVQLQEAERQHQSERVDFEATLSRYQREAEQSHVALQRAEDRVEQKEAEVEELQKRLLGMETEHQALLAKVREGETALEELRGKNSDCRAEQEKAANLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQSKDTAIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQNRAKTENPGSVRISKPPSPKPMPLIRVVET", "length": 344, "header": "tr|A0A287BPU7-1|A0A287BPU7_PIG Computationally mapped isoform of Tuftelin 1 OS=Sus scrofa OX=9823 GN=TUFT1 PE=4 SV=2 CANONICAL=A0A4X1W2Q2-1" }, "locus": { "chromosome": "4", "start_pos": 97703500, "end_pos": 97650327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036727.2", "url": "https://www.ensembl.org/id/ENSSSCT00000036727.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058536.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058536.2" } ] } }, { "isoform_ac": "A0A4X1W2Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2/entry", "sequence": { "sequence": "MMNGTRSWCTLVDVHPEAQTSGSVDILRLTLQSELTGDELERIAQKAGRKTYAMVSGRSTGHSLASELVESNDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNSLQKLREDISSKLDKDPGASLHQQEIQVVLEKPNGFSSSPSTPPPPPNSRTPEVDTFVNEDVESLRKTVQDLLVQLQEAERQHQSERVDFEATLSRYQREAEQSHVALQRAEDRVEQKEAEVEELQKRLLGMETEHQALLAKVREGETALEELRGKNSDCRAEQEKAANLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQSKDTAIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQNRAKTENPGSVRISKPPSPKPMPLIRVVET", "length": 395, "header": "tr|A0A4X1W2Q2-1|A0A4X1W2Q2_PIG Isoform 1 of Tuftelin 1 OS=Sus scrofa OX=9823 GN=TUFT1 PE=4 SV=1 CANONICAL=A0A4X1W2Q2-1" }, "locus": { "chromosome": "4", "start_pos": 97703500, "end_pos": 97650327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007254.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007254.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007059.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007059.3" } ] } }, { "isoform_ac": "A0A5G2QXN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN1/entry", "sequence": { "sequence": "MVSGRSTGHSLASELVESNDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNSLQKLREDISSKLDKDPGASLHQQEIQVVLEKPNGFSSSPSTPPPPPNSRTPEVDTFVNEDVESLRKTVQDLLVQLQEAERQHQSERVDFEATLSRYQREAEQSHVALQRAEDRVEQKEAEVEELQKRLLGMETEHQALLAKVREGETALEELRGKNSDCRAEQEKAANLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQSKDTAIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQNRAKTENPGSVRISKPPSPKPMPLIRVVET", "length": 342, "header": "tr|A0A5G2QXN1-1|A0A5G2QXN1_PIG Computationally mapped isoform of Tuftelin 1 OS=Sus scrofa OX=9823 GN=TUFT1 PE=4 SV=1 CANONICAL=A0A4X1W2Q2-1" }, "locus": { "chromosome": "4", "start_pos": 97675645, "end_pos": 97650327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069190.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069190.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062967.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062967.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 154, "start_aa": "Thr", "end_pos": 154, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr154", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K7T4-1", "protein_name": "Tuftelin 1", "gene_name": "Tuft1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNGTRSWCTLVDVHPESQTAESVDILRLPLQSELTGDELEHIAQKAGKKTYAMVSGHSSGHSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDISSKLDRSPGGPLHQQEIQVVLEKPNGFSQSPMTLYSSPPEVDPSMSEDVESLKKTVQGLLAKLREAEQRHQSDRVAFEVTLSRYQREAEQSNVALQREEDRVEQKAAEIGELQSRLLGMEAEHQALLVKVREGDMALEELRIKNADCQAEREKSASLEKEVAGFREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQVSHGNFSTQTRAKTENLGSVRISKPPSPKPLPLIRVVET", "length": 390 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3Q1MGN7-1", "protein_name": "Tuftelin 1", "gene_name": "TUFT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNGTRNWCTLVDVHPEGQTAAGRKTYAMVSSRSTSHSLASELVESNDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDISSKLDRDPGDSVHKQEIQVVLEKPNGLSEGPLTTYSSPPEVDTHINEDVESLRKTVQDLLVKLQEAERQHQSDCSAFKVTLSQYQREAKQSQVALQRAEDRAEQKEAEVGELQRRLQGMETEYQAILAKVREGETALEELRSKNVDCQAEQEKAANLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDTTIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQNRAKTENLGSIRISKPPSPKPMPLIRVVET", "length": 365 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V1A6P7-1", "protein_name": "Tuftelin 1", "gene_name": "TUFT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRCGAAVGAMNGAMNGVRGWCAVLDVRPHGENPESVKVLRLTLPNELPGERREQAKQKPVGKAFAMVANRSSNGHALASERIKSNDGDEEIIKVYLKARAEGSANHEEHVSQLKSEVRHIQEARSFLKKLREDLSSKLESRQGDKEHTQVVLEEQNGSWLHPERLRAEPWEEQDEDCSGDDVEKMRQTARRLFTRLQEAEKCHQLEKKDLERTVSRYREEAEQTSCALRRAERSVVEKELQVDELQRLLAGMEKEHRTLLLKMKDSEAELARLRSVEGDKLAEQDRSAKLEKEVAMLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQAKDAVIQELKEKVAYLEAENLEMHDRIEHLIEKQVSRGGHSSRARSKSEYVSSKRLMGPKPLPLIRVVET", "length": 400 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H308-1", "protein_name": "Tuftelin isoform X1", "gene_name": "Tuft1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNGTRNWCTLVDVHPEGQTAGSVDILRLTLQSELTGDELEHIAQKAGRNTYAMVSDRSSGHSLASELVESHDGHEEIIKVYLKGRSGDRMIHEKSINQLKSEVQYIQEARNCLQKLREDISSKLDRNPGDPLQQQEIQVVLEKPNGFGQGPMTLYSSPPEADTCMTDDVESLKKTVQGLLAKLQEAERRHQSDRVAFEVTLKQYQREAEQSNVALQREEDRVEQKSAEVGELQRRLLGMETEHQALLSKVREGEMALEELRIKNADCQAEREKAAALEKEVAGFREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDTTIQELKEKIAYLEAENLEMHDRMEHLIEKQVSHGNFSTQTRAKTENLGSVRISKPPSPKPMPLIRVVET", "length": 390 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O08970-1", "protein_name": "Tuftelin", "gene_name": "Tuft1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNGTRNWCTLVDVHPESQTAGSVDILRLTLQSELTGDELEHIAQKAGRKTYAMMPGHSSGHSLASELVESHDGHEEIIKVYLKGRSGDKMTHEKNIDQLKSEVQYIQEARNCLQKLREDISSKLDRSPGDPLRQQEIQVVLEKPNGFSQSPMTLYSSPPEVDPSMSEDVESLKKTVQELLVKLREAERRHQSDRVAFEVTLSRYQREAEQSNVALQREEDRVEQKAAEIEELQRRLLGMEAEHQALLVKVREGEMALEELRIKNADCQTEREKSAALEKEVAGFREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQVSHGNFSTQARAKTENLGSVRISKPPSPKPMPLIRVVET", "length": 390 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NNX1-1", "protein_name": "Tuftelin", "gene_name": "TUFT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNGTRNWCTLVDVHPEDQAAGSVDILRLTLQGELTGDELEHIAQKAGRKTYAMVSSHSAGHSLASELVESHDGHEEIIKVYLKGRSGDKMIHEKNINQLKSEVQYIQEARNCLQKLREDISSKLDRNLGDSLHRQEIQVVLEKPNGFSQSPTALYSSPPEVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVALEELRSNNADCQAEREKAATLEKEVAGLREKIHHLDDMLKSQQRKVRQMIEQLQNSKAVIQSKDATIQELKEKIAYLEAENLEMHDRMEHLIEKQISHGNFSTQARAKTENPGSIRISKPPSPKPMPVIRVVET", "length": 390 }, "evidence": [ { "id": "A0A4X1W2Q2", "url": "https://omabrowser.org/oma/group/A0A4X1W2Q2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "I band", "id": "GO:0031674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ], "pmid": "" }, { "name": "RNA polymerase II, core complex", "id": "GO:0005665", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005665", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Q2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 154 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 361, "end_pos": 363 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W2V9-1", "uniprot_ac": "A0A4X1W2V9", "uniprot_id": "A0A4X1W2V9_PIG", "mass": { "chemical_mass": 21322.0, "monoisotopic_mass": 21322.0 }, "refseq": { "ac": "XP_003127241", "name": "zinc finger protein 576 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127241" }, "gene_names": [ { "name": "ZNF576", "type": "recommended", "evidence": [ { "id": "A0A4X1W2V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" } ] }, { "name": "ZNF576", "type": "synonym", "evidence": [ { "id": "XP_003127241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127241" } ] } ], "protein_names": [ { "name": "Zinc finger protein 576", "type": "synonym", "evidence": [ { "id": "A0A4X1W2V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 576 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003127241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127241" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2V9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF576", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9", "locus": { "chromosome": "6", "start_pos": 50446056, "end_pos": 50442240, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036291", "url": "https://www.ensembl.org/id/ENSSSCG00000036291" } ] } } ], "crossref": [ { "id": "A0A4X1W2V9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W2V9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100520198", "url": "https://www.ncbi.nlm.nih.gov/gene/100520198", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520198", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520198", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SNQCFHC", "url": "https://omabrowser.org/oma/group/SNQCFHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W2V9", "url": "https://www.orthodb.org/?gene=A0A4X1W2V9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127241", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127241", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W2V9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W2V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPERRRAKPGIPVIMEQQDPLEVPHSKVTTEQQDSSKERSAPNPGGDNCHQGTLQCTRCLITFADSKFQERHMKREHPEDFVAQKLQGVEFICFTCARSFPSSKALIAHQRSHGPAVRPSQLAAPTTTQPTFPCPDCGKTFGQAASLRRHRQAHEARTPPGPFACTECGQDFAQEAGLHQHYIRHARGEL", "length": 191, "header": "tr|A0A4X1W2V9-1|A0A4X1W2V9_PIG Isoform 1 of Zinc finger protein 576 OS=Sus scrofa OX=9823 GN=ZNF576 PE=4 SV=1 CANONICAL=A0A4X1W2V9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W2V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9/entry", "sequence": { "sequence": "MFPERRRAKPGIPVIMEQQDPLEVPHSKVTTEQQDSSKERSAPNPGGDNCHQGTLQCTRCLITFADSKFQERHMKREHPEDFVAQKLQGVEFICFTCARSFPSSKALIAHQRSHGPAVRPSQLAAPTTTQPTFPCPDCGKTFGQAASLRRHRQAHEARTPPGPFACTECGQDFAQEAGLHQHYIRHARGEL", "length": 191, "header": "tr|A0A4X1W2V9-1|A0A4X1W2V9_PIG Isoform 1 of Zinc finger protein 576 OS=Sus scrofa OX=9823 GN=ZNF576 PE=4 SV=1 CANONICAL=A0A4X1W2V9-1" }, "locus": { "chromosome": "6", "start_pos": 50445121, "end_pos": 50442531, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060345.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060345.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037380.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037380.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2V9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520198", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520198", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9H609-1", "protein_name": "Zinc finger protein 576", "gene_name": "ZNF576", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDPNPEENMKQQDSPKERSPQSPGGNICHLGAPKCTRCLITFADSKFQERHMKREHPADFVAQKLQGVLFICFTCARSFPSSKALITHQRSHGPAAKPTLPVATTTAQPTFPCPDCGKTFGQAVSLRRHRQMHEVRAPPGTFACTECGQDFAQEAGLHQHYIRHARGEL", "length": 170 }, "evidence": [ { "id": "A0A4X1W2V9", "url": "https://omabrowser.org/oma/group/A0A4X1W2V9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2V9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2V9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W2V9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2V9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 114, "start_aa": "Phe", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W2Y5-1", "uniprot_ac": "A0A4X1W2Y5", "uniprot_id": "A0A4X1W2Y5_PIG", "mass": { "chemical_mass": 16882.0, "monoisotopic_mass": 16882.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "UBC core domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1W2Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5", "locus": {} } ], "crossref": [ { "id": "A0A4X1W2Y5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W2Y5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23792", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23792", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WTEKFAM", "url": "https://omabrowser.org/oma/group/WTEKFAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W2Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALKRIHKELLDLSRDPPDQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFKPPKIAFTTQIYHPNINRNGNICLDILRSEWSPALTISKVLLSICSMLCDPNPDDPLVPEIAKIYTKDRRKYDRIAREWTEKYAM", "length": 147, "header": "tr|A0A4X1W2Y5-1|A0A4X1W2Y5_PIG Isoform 1 of UBC core domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1W2Y5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W2Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5/entry", "sequence": { "sequence": "MALKRIHKELLDLSRDPPDQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFKPPKIAFTTQIYHPNINRNGNICLDILRSEWSPALTISKVLLSICSMLCDPNPDDPLVPEIAKIYTKDRRKYDRIAREWTEKYAM", "length": 147, "header": "tr|A0A4X1W2Y5-1|A0A4X1W2Y5_PIG Isoform 1 of UBC core domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1W2Y5-1" }, "locus": { "chromosome": "X", "start_pos": 70732455, "end_pos": 70732015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013636.2", "url": "https://www.ensembl.org/id/ENSSSCT00000013636.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013268.1", "url": "https://www.ensembl.org/id/ENSSSCP00000013268.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LM87-1", "protein_name": "E2 ubiquitin-conjugating enzyme", "gene_name": "LOC100760048", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALKRIQKELLDLARDPPAQCSAGPVGEDPFHWQATIMGPDESPYHGGVFFLAIHFPSDYPFRPPKITFITRIYHPNINRKGTICLDILRSEWSPALTISKVLLSICSLLCDPNPDDPLVPEIAKVYRKNKKKYDRLAREWTEKFAM", "length": 147 }, "evidence": [ { "id": "A0A4X1W2Y5", "url": "https://omabrowser.org/oma/group/A0A4X1W2Y5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6GLC9-1", "protein_name": "E2 ubiquitin-conjugating enzyme", "gene_name": "Ube2d4l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKRIEKELLDLARDPPTQCSAGPVGEDMFHWQATIMGPDDSPYQGGVFFLAIHFPTDYPFKPPKITFTTRIYHPNINRKGSICLDILRSEWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAKIYRKDKKKYDRLAREWTEKFAM", "length": 147 }, "evidence": [ { "id": "A0A4X1W2Y5", "url": "https://omabrowser.org/oma/group/A0A4X1W2Y5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W2Y5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W2Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W2Y5" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 147, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W3I3-1", "uniprot_ac": "A0A4X1W3I3", "uniprot_id": "A0A4X1W3I3_PIG", "mass": { "chemical_mass": 51843.0, "monoisotopic_mass": 51843.0 }, "refseq": { "ac": "XP_005673818", "name": "XK-related protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673818" }, "gene_names": [ { "name": "XKRX", "type": "recommended", "evidence": [ { "id": "A0A4X1W3I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3" } ] }, { "name": "XKRX", "type": "synonym", "evidence": [ { "id": "XP_005673818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673818" } ] } ], "protein_names": [ { "name": "XK-related protein", "type": "recommended", "evidence": [ { "id": "A0A4X1W3I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3/entry#names_and_taxonomy" } ] }, { "name": "XK-related protein 2", "type": "synonym", "evidence": [ { "id": "XP_005673818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673818" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W3I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "XKRX", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3", "locus": { "chromosome": "X", "start_pos": 82610758, "end_pos": 82630310, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012487", "url": "https://www.ensembl.org/id/ENSSSCG00000012487" } ] } } ], "crossref": [ { "id": "A0A4X1W3I3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W3I3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012487", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012487", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518168", "url": "https://www.ncbi.nlm.nih.gov/gene/100518168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518168", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SETYWMA", "url": "https://omabrowser.org/oma/group/SETYWMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W3I3", "url": "https://www.orthodb.org/?gene=A0A4X1W3I3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14297", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14297", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14297:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14297:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005673818", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673818", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W3I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W3I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMG2", "url": "https://www.uniprot.org/uniprotkb/K7GMG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMG2-1", "url": "https://www.uniprot.org/uniprotkb/K7GMG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQVFEIPEEPNVDAMSPLEEDVIRGANPRFTFPFGILFSTFLYCGEAASTLYMVRIYRKNSETYWMAYTFSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEGQEEPYVSLTRKKMLINGEEMLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVTLISAEVPLGRAVLMVFSLISVTYGATLCNMLAIQIKYDEYKIRLGPLEVLCITIWRTLEITSRLMILVLFSATLKLKAVPFLLLNFLIILFEPWVKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSALQLKLADRDLVEKGQNWGHMGLHYSVRLVENVIMVLVFKFFGVKVLLDYCHSSIALQLIIAYLISIGFMLLFFQYLHPLRSLFTHNVVDYLHCVCCHQHPRGRVENSEPSVDAETRQSIV", "length": 449, "header": "tr|A0A4X1W3I3-1|A0A4X1W3I3_PIG Isoform 1 of XK-related protein OS=Sus scrofa OX=9823 GN=XKRX PE=3 SV=1 CANONICAL=A0A4X1W3I3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W3I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3/entry", "sequence": { "sequence": "MDQVFEIPEEPNVDAMSPLEEDVIRGANPRFTFPFGILFSTFLYCGEAASTLYMVRIYRKNSETYWMAYTFSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEGQEEPYVSLTRKKMLINGEEMLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVTLISAEVPLGRAVLMVFSLISVTYGATLCNMLAIQIKYDEYKIRLGPLEVLCITIWRTLEITSRLMILVLFSATLKLKAVPFLLLNFLIILFEPWVKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSALQLKLADRDLVEKGQNWGHMGLHYSVRLVENVIMVLVFKFFGVKVLLDYCHSSIALQLIIAYLISIGFMLLFFQYLHPLRSLFTHNVVDYLHCVCCHQHPRGRVENSEPSVDAETRQSIV", "length": 449, "header": "tr|A0A4X1W3I3-1|A0A4X1W3I3_PIG Isoform 1 of XK-related protein OS=Sus scrofa OX=9823 GN=XKRX PE=3 SV=1 CANONICAL=A0A4X1W3I3-1" }, "locus": { "chromosome": "X", "start_pos": 82629219, "end_pos": 82615502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087387.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087387.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068976.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068976.1" } ] } }, { "isoform_ac": "K7GMG2-1", "url": "https://www.uniprot.org/uniprotkb/K7GMG2/entry", "sequence": { "sequence": "MDQVFEIPEEPNVDAMSPLEEDVIRGANPRFTFPFGILFSTFLYCGEAASTLYMVRIYRKNSETYWMAYTFSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVISCANGLFPDICHLWGYSLQYAGYPDQVR", "length": 139, "header": "tr|K7GMG2-1|K7GMG2_PIG Computationally mapped isoform of XK-related protein OS=Sus scrofa OX=9823 GN=XKRX PE=3 SV=2 CANONICAL=A0A4X1W3I3-1" }, "locus": { "chromosome": "X", "start_pos": 82629219, "end_pos": 82616163, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035839.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035839.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029054.2", "url": "https://www.ensembl.org/id/ENSSSCP00000029054.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W3I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518168", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5GH60-1", "protein_name": "XK-related protein 2", "gene_name": "Xkrx", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDRVYEIPEEPNVVPIASLEDVIRGPNPRFTFPFSILFSTFLYCGEAASALYMVRIYRKNNETFWMTYTFSFFMFSSIMVQLTLIFVHRDLAKDRPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEGQEEPYVSLTRKKMLIDGQEVLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVTLISAEVPLGRAVLMFFSLISVTYGATLCNMLAIQIKYDDYKIRLGPVEVLCITIWRTLEITSRLMILVLFSATLKLKAVPFLVLNFLIILFEPWVKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSAMQLKLADRDLVDKGQNWGHMGLHYSVRLVENVIMVLVFKYFGVKVLLNYSHSLMAIQLIIAYLISIGFMLLFFQYLHPLRSLFTHNVVDYLHCICCRRHHRERVENSETSCEPDTRQSIV", "length": 448 }, "evidence": [ { "id": "A0A4X1W3I3", "url": "https://omabrowser.org/oma/group/A0A4X1W3I3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5GH68-1", "protein_name": "XK-related protein 2", "gene_name": "Xkrx", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDRVYEIPEEPNVVPISSLEEDVIRGPNPRFTFPFSILFSTFLYCGEAASALYMVRIYRKNNETFWMTYTFSFFMFSSIMVQLTLIFVHRDLAKDRPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEGQEEPYVSLTRKKMLIAGQEVLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVSLISAEVPLGRAVLMAFSLISVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITVWRTLEITSRLVILVLFSATLKLKAVPFLVLNFLIILFEPWVKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSAMQLKLADRDLVDKGQNWGHMGLHYSVRLVENVIMVLVFKYFGVKVLLNYCHSLIAVQLIIAYLISIGVMLLFFQYLHPLRSLFTNNVVDYLHCICCRRPRPERVENSETSCEADTTQSIV", "length": 449 }, "evidence": [ { "id": "A0A4X1W3I3", "url": "https://omabrowser.org/oma/group/A0A4X1W3I3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PP77-1", "protein_name": "XK-related protein 2", "gene_name": "XKRX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDRVYEIPEEPNVDPVSSLEEDVIRGANPRFTFPFSILFSTFLYCGEAASALYMVRIYRKNSETYWMTYTFSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEEQEEPYVSLTRKKMLIDGEEVLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVSLISAEVPLGRVVLMVFSLVSVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITIWRTLEITSRLLILVLFSATLKLKAVPFLVLNFLIILFEPWIKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSALQLRLADRDLVDKGQNWGHMGLHYSVRLVENVIMVLVFKFFGVKVLLNYCHSLIALQLIIAYLISIGFMLLFFQYLHPLRSLFTHNVVDYLHCVCCHQHPRTRVENSEPPFETEARQSVV", "length": 449 }, "evidence": [ { "id": "A0A4X1W3I3", "url": "https://omabrowser.org/oma/group/A0A4X1W3I3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W3I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W3I3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 }, { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W450-1", "uniprot_ac": "A0A4X1W450", "uniprot_id": "A0A4X1W450_PIG", "mass": { "chemical_mass": 72633.0, "monoisotopic_mass": 72633.0 }, "refseq": { "ac": "XP_020949544", "name": "zinc finger protein 90 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949544" }, "gene_names": [ { "name": "ZFP90", "type": "recommended", "evidence": [ { "id": "A0A4X1W450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ] }, { "name": "ZFP90", "type": "synonym", "evidence": [ { "id": "XP_020949544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949544" } ] } ], "protein_names": [ { "name": "ZFP90 zinc finger protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 90 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020949544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949544" } ] } ], "function": [ { "annotation": "Inhibits the transcriptional repressor activity of REST by inhibiting its binding to DNA, thereby derepressing transcription of REST target genes.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0SB82", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB82#function" }, { "database": "UniProtKB", "id": "ARBA00056474", "url": "https://www.uniprot.org/uniprotkb/ARBA00056474#function" }, { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFP90", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450", "locus": { "chromosome": "6", "start_pos": 18312935, "end_pos": 18335458, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032372", "url": "https://www.ensembl.org/id/ENSSSCG00000032372" } ] } } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620865", "url": "https://www.ncbi.nlm.nih.gov/gene/100620865", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W450-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SB82", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SB82-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRPPTARPQESVTFKDVAVNFTQEEWHHVDPAQRRLYRDVMLENYSHLVSVGYQVSKPEVIFKLEQGEEPWIAEGEIQRPFCPDWKTRPEAKSSNLRQNISEVFPSTDDLSHATLEDAWDVSGQLERHQENCKRHLGPDASTPKKIITPEETCEQNKFSENSRFNTNLVIQLNIPPRPSECDSLGSNLGHNSDLINQNNVLAKKKPYKCNKCRKAFIHRSSLTKHEKTHKGDGSFPNGTDQGIYPGKKHHECTDCGKTFLWKTQLTEHQRIHTGEKPFECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHGTSLTQHEVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGKPYQSNNYGIDFKHTSLLTQDESTLTEVKSYHCNDCGEDFSHITDFSDHQRSHTGENPYDCEQAFSQQSISYPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGKAFSQSSSLIQHERTHTGEKPYECNECGRAFRKKTNLHDHQRIHTGEKPYTCKECGKNFSRSSALTKHQRIHTRNKL", "length": 634, "header": "tr|A0A4X1W450-1|A0A4X1W450_PIG Isoform 1 of ZFP90 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP90 PE=3 SV=1 CANONICAL=A0A4X1W450-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W450-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450/entry", "sequence": { "sequence": "MAPRPPTARPQESVTFKDVAVNFTQEEWHHVDPAQRRLYRDVMLENYSHLVSVGYQVSKPEVIFKLEQGEEPWIAEGEIQRPFCPDWKTRPEAKSSNLRQNISEVFPSTDDLSHATLEDAWDVSGQLERHQENCKRHLGPDASTPKKIITPEETCEQNKFSENSRFNTNLVIQLNIPPRPSECDSLGSNLGHNSDLINQNNVLAKKKPYKCNKCRKAFIHRSSLTKHEKTHKGDGSFPNGTDQGIYPGKKHHECTDCGKTFLWKTQLTEHQRIHTGEKPFECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHGTSLTQHEVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGKPYQSNNYGIDFKHTSLLTQDESTLTEVKSYHCNDCGEDFSHITDFSDHQRSHTGENPYDCEQAFSQQSISYPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGKAFSQSSSLIQHERTHTGEKPYECNECGRAFRKKTNLHDHQRIHTGEKPYTCKECGKNFSRSSALTKHQRIHTRNKL", "length": 634, "header": "tr|A0A4X1W450-1|A0A4X1W450_PIG Isoform 1 of ZFP90 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP90 PE=3 SV=1 CANONICAL=A0A4X1W450-1" }, "locus": { "chromosome": "6", "start_pos": 18334956, "end_pos": 18315097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039730.1", "url": "https://www.ensembl.org/id/ENSSSCT00000039730.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043795.1" } ] } }, { "isoform_ac": "A0A8D0SB82-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB82/entry", "sequence": { "sequence": "MAPRPPTARPQESVTFKDVAVNFTQEEWHHVDPAQRRLYRDVMLENYSHLVSVDWKTRPEAKSSNLRQNISEVFPSTDDLSHATLEDAWDVSGQLERHQENCKRHLGPDASTPKKIITPEETCEQNKFSENSRFNTNLVIQLNIPPRPSECDSLGSNLGHNSDLINQNNVLAKKKPYKCNKCRKAFIHRSSLTKHEKTHKGDGSFPNGTDQGIYPGKKHHECTDCGKTFLWKTQLTEHQRIHTGEKPFECNVCGKAFRHSSSLGQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNLCGRSFRHGTSLTQHEVTHSGEKPFQCKECGKAFSRCSSLVQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGKPYQSNNYGIDFKHTSLLTQDESTLTEVKSYHCNDCGEDFSHITDFSDHQRSHTGENPYDCEQAFSQQSISYPGEKPYQCNVCGKAFKRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGKAFSQSSSLIQHERTHTGEKPYECNECGRAFRKKTNLHDHQRIHTGEKPYTCKECGKNFSRSSALTKHQRIHTRNKL", "length": 602, "header": "tr|A0A8D0SB82-1|A0A8D0SB82_PIG Computationally mapped isoform of ZFP90 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP90 PE=3 SV=1 CANONICAL=A0A4X1W450-1" }, "locus": { "chromosome": "6", "start_pos": 18334956, "end_pos": 18315097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056579.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056579.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040290.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040290.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W450", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" }, { "start_pos": 615, "end_pos": 617, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 209, "end_pos": 236, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W450" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 85, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 22, "end_pos": 24 }, { "start_pos": 239, "end_pos": 241 }, { "start_pos": 46, "end_pos": 48 }, { "start_pos": 615, "end_pos": 617 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4F3-1", "uniprot_ac": "A0A4X1W4F3", "uniprot_id": "A0A4X1W4F3_PIG", "mass": { "chemical_mass": 18549.0, "monoisotopic_mass": 18549.0 }, "refseq": { "ac": "XP_020942856", "name": "39S ribosomal protein L30, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942856" }, "gene_names": [ { "name": "MRPL30", "type": "recommended", "evidence": [ { "id": "A0A4X1W4F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ] }, { "name": "MRPL30", "type": "synonym", "evidence": [ { "id": "XP_020942856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942856" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL30m", "type": "recommended", "evidence": [ { "id": "A0A4X1W4F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3/entry#names_and_taxonomy" } ] }, { "name": "39S ribosomal protein L30, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_020942856", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942856" }, { "id": "A0A4X1W4F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPL30", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3", "locus": { "chromosome": "3", "start_pos": 55032996, "end_pos": 55076388, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008183", "url": "https://www.ensembl.org/id/ENSSSCG00000008183" } ] } } ], "crossref": [ { "id": "cd01658", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01658", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521315", "url": "https://www.ncbi.nlm.nih.gov/gene/100521315", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "4CE4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4CE4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "4V19", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4V19&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GB2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR005996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521315", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521315", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XSPEDHE", "url": "https://omabrowser.org/oma/group/XSPEDHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W4F3", "url": "https://www.orthodb.org/?gene=A0A4X1W4F3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15892", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15892", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15892:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15892:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00004ce4", "url": "https://www.rcsb.org/structure/pdb_00004ce4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00004v19", "url": "https://www.rcsb.org/structure/pdb_00004v19", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005aj4", "url": "https://www.rcsb.org/structure/pdb_00005aj4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gb2", "url": "https://www.rcsb.org/structure/pdb_00006gb2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsh", "url": "https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4CE4", "url": "https://www.rcsb.org/structure/4CE4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4V19", "url": "https://www.rcsb.org/structure/4V19", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.rcsb.org/structure/5AJ4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.rcsb.org/structure/7NSH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942856", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942856", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1MIP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGILRSVVQRPPGRLQTVTKGMESLICTDWIRHKFTRSRIPDKVFQPSPEDHEKYGGDPQYPHKLHIVTRIKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPTEEDMANTCLKSNGELVVRWLLNPANQEARKS", "length": 161, "header": "tr|A0A4X1W4F3-1|A0A4X1W4F3_PIG Isoform 1 of Large ribosomal subunit protein uL30m OS=Sus scrofa OX=9823 GN=MRPL30 PE=3 SV=1 CANONICAL=A0A4X1W4F3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3/entry", "sequence": { "sequence": "MAGILRSVVQRPPGRLQTVTKGMESLICTDWIRHKFTRSRIPDKVFQPSPEDHEKYGGDPQYPHKLHIVTRIKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPTEEDMANTCLKSNGELVVRWLLNPANQEARKS", "length": 161, "header": "tr|A0A4X1W4F3-1|A0A4X1W4F3_PIG Isoform 1 of Large ribosomal subunit protein uL30m OS=Sus scrofa OX=9823 GN=MRPL30 PE=3 SV=1 CANONICAL=A0A4X1W4F3-1" }, "locus": { "chromosome": "3", "start_pos": 55049156, "end_pos": 55041752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044138.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044138.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068548.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068548.1" } ] } }, { "isoform_ac": "A0A8D1MIP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3/entry", "sequence": { "sequence": "HPPRQDFLVRRQPHRNRTVTKGMESLICTDWIRHKFTRSRIPDKVFQPSPEDHEKYGGDPQYPHKLHIVTRIKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPTEEDMANTCLKSNGELVVRWLLNPANQEARKS", "length": 161, "header": "tr|A0A8D1MIP3-1|A0A8D1MIP3_PIG Computationally mapped isoform of Large ribosomal subunit protein uL30m OS=Sus scrofa OX=9823 GN=MRPL30 PE=1 SV=1 CANONICAL=A0A4X1W4F3-1" }, "locus": { "chromosome": "3", "start_pos": 55048036, "end_pos": 55041752, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008962.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008962.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008736.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008736.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Architecture of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leitner Alexander, Bieri Philipp, Voigts-Hoffmann Felix, Erzberger Jan P, Leibundgut Marc, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "24362565", "url": "https://glygen.org/publication/PubMed/24362565" } ] }, { "title": "The complete structure of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leibundgut Marc, Bieri Philipp, Leitner Alexander, Schmitz Nikolaus, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "25271403", "url": "https://glygen.org/publication/PubMed/25271403" } ] }, { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1MIP3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1MIP3" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] } ], "pathway": [ { "id": "ssc:100521315", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521315", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8TCC3-1", "protein_name": "Large ribosomal subunit protein uL30m", "gene_name": "MRPL30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGILRLVVQWPPGRLQTVTKGVESLICTDWIRHKFTRSRIPEKVFQASPEDHEKYGGDPQNPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKPVEQKAHES", "length": 161 }, "evidence": [ { "id": "A0A4X1W4F3", "url": "https://omabrowser.org/oma/group/A0A4X1W4F3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" }, { "name": "large ribosomal subunit", "id": "GO:0015934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015934", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W4F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4F3" }, { "id": "PF00327", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00327" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL30-like ferredoxin-like fold", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 117, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4K0-1", "uniprot_ac": "A0A4X1W4K0", "uniprot_id": "A0A4X1W4K0_PIG", "mass": { "chemical_mass": 16786.0, "monoisotopic_mass": 16786.0 }, "refseq": { "ac": "NP_001230349", "name": "cold shock domain-containing protein C2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230349" }, "gene_names": [ { "name": "CSDC2", "type": "recommended", "evidence": [ { "id": "A0A4X1W4K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ] }, { "name": "CSDC2", "type": "synonym", "evidence": [ { "id": "NP_001230349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230349" } ] } ], "protein_names": [ { "name": "Cold shock domain containing C2", "type": "synonym", "evidence": [ { "id": "A0A4X1W4K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0/entry#names_and_taxonomy" } ] }, { "name": "cold shock domain containing C2, RNA binding", "type": "synonym", "evidence": [ { "id": "NP_001230349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230349" } ] }, { "name": "cold shock domain-containing protein C2", "type": "synonym", "evidence": [ { "id": "NP_001230349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230349" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CSDC2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0", "locus": { "chromosome": "5", "start_pos": 6975844, "end_pos": 6988366, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000062", "url": "https://www.ensembl.org/id/ENSSSCG00000000062" } ] } } ], "crossref": [ { "id": "A0A4X1W4K0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W4K0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153407", "url": "https://www.ncbi.nlm.nih.gov/gene/100153407", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153407", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153407", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QFSRAQG", "url": "https://omabrowser.org/oma/group/QFSRAQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W4K0", "url": "https://www.orthodb.org/?gene=A0A4X1W4K0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12962:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12962:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230349", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230349", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSEPTPPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVSSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 153, "header": "tr|A0A4X1W4K0-1|A0A4X1W4K0_PIG Isoform 1 of Cold shock domain containing C2 OS=Sus scrofa OX=9823 GN=CSDC2 PE=1 SV=1 CANONICAL=A0A4X1W4K0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0/entry", "sequence": { "sequence": "MTSEPTPPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVSSRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 153, "header": "tr|A0A4X1W4K0-1|A0A4X1W4K0_PIG Isoform 1 of Cold shock domain containing C2 OS=Sus scrofa OX=9823 GN=CSDC2 PE=1 SV=1 CANONICAL=A0A4X1W4K0-1" }, "locus": { "chromosome": "5", "start_pos": 6980026, "end_pos": 6977775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000068.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000068.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000068.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000068.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 6, "start_aa": "Thr", "end_pos": 6, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr6", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153407", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153407", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P545-1", "protein_name": "Cold shock domain containing C2", "gene_name": "CSDC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSEPGAPPAVPPLHSPKSPVWPTFPFQREGSRVWERGNLLLRDLPSPLPTKRTRTYSATARASAGPIYKGVCKQFSRSQGHGFITPENGTEDIFVHVSDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTNLAPHTKHETWSGQIIGS", "length": 153 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FIC6-1", "protein_name": "Cold shock domain-containing protein C2 isoform X1", "gene_name": "Csdc2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPEDFETTTESIPGEATEQGKAGPCPKGRQSPSPAPVSQSPPGSRAGATMTSEPTSPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGISPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 203 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9T513-1", "protein_name": "Cold shock domain containing C2", "gene_name": "CSDC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQTEPVAGEAAEQGQAGPCPSGRPSPSPAPAPGSPPGSPAGPAMTSEPTPPAVVPPLHSPKSPVWPTFPFHREGSRVWERGSVSSRDLPSPLPTKRTRTYSATARASAGPVFKGICKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKVCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 196 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q63430-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "Csdc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSESTSPPVVPPLHSPKSPVWPTFPFHRESSRIWERGGGVSPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 154 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91YQ3-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "Csdc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSESTLPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGIAPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 154 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y534-1", "protein_name": "Cold shock domain-containing protein C2", "gene_name": "CSDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRDLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS", "length": 153 }, "evidence": [ { "id": "A0A4X1W4K0", "url": "https://omabrowser.org/oma/group/A0A4X1W4K0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of mRNA stability", "id": "GO:0043488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043488", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4K0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W4K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4K0" }, { "id": "PS51857", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CSD", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 134, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 6 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4M7-1", "uniprot_ac": "A0A4X1W4M7", "uniprot_id": "A0A4X1W4M7_PIG", "mass": { "chemical_mass": 10386.0, "monoisotopic_mass": 10386.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W4M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4M7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7", "locus": {} } ], "crossref": [ { "id": "A0A4X1W4M7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W4M7", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1W4M7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSETSVPLETASPLPPFTSGSCLAFFASSFRGFTFFLTRWEISVTQFDEEAPSAGFLLAIWQKGKPPPLGVKPEVELSTCAKEDKPQWVWVPG", "length": 94, "header": "tr|A0A4X1W4M7-1|A0A4X1W4M7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W4M7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4M7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7/entry", "sequence": { "sequence": "MFSETSVPLETASPLPPFTSGSCLAFFASSFRGFTFFLTRWEISVTQFDEEAPSAGFLLAIWQKGKPPPLGVKPEVELSTCAKEDKPQWVWVPG", "length": 94, "header": "tr|A0A4X1W4M7-1|A0A4X1W4M7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W4M7-1" }, "locus": { "chromosome": "6", "start_pos": 165776734, "end_pos": 165775753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049647.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049647.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035973.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035973.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4M7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4M7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4Q9-1", "uniprot_ac": "A0A4X1W4Q9", "uniprot_id": "A0A4X1W4Q9_PIG", "mass": { "chemical_mass": 38804.0, "monoisotopic_mass": 38804.0 }, "refseq": { "ac": "XP_005663911", "name": "heterogeneous nuclear ribonucleoprotein A1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911" }, "gene_names": [ { "name": "HNRNPA1", "type": "recommended", "evidence": [ { "id": "A0A4X1W4Q9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ] }, { "name": "HNRNPA1", "type": "synonym", "evidence": [ { "id": "XP_005663911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911" } ] }, { "name": "HNRPA1", "type": "synonym", "evidence": [ { "id": "XP_005663911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911" } ] }, { "name": "ROA1", "type": "synonym", "evidence": [ { "id": "XP_005663911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911" } ] } ], "protein_names": [ { "name": "Heteroous nuclear ribonucleoprotein A1", "type": "synonym", "evidence": [ { "id": "A0A4X1W4Q9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9/entry#names_and_taxonomy" } ] }, { "name": "heterogeneous nuclear ribonucleoprotein A1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HNRNPA1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9", "locus": { "chromosome": "5", "start_pos": 19491417, "end_pos": 19485096, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000288", "url": "https://www.ensembl.org/id/ENSSSCG00000000288" } ] } } ], "crossref": [ { "id": "A0A4X1W4Q9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W4Q9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000288", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000288", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12582", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12582", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "768103", "url": "https://www.ncbi.nlm.nih.gov/gene/768103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AQFTKHF", "url": "https://omabrowser.org/oma/group/AQFTKHF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W4Q9", "url": "https://www.orthodb.org/?gene=A0A4X1W4Q9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6803529", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803529", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005663911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663911", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4R4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBR7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 373, "header": "tr|A0A4X1W4Q9-1|A0A4X1W4Q9_PIG Isoform 1 of Heteroous nuclear ribonucleoprotein A1 OS=Sus scrofa OX=9823 GN=HNRNPA1 PE=1 SV=1 CANONICAL=A0A4X1W4Q9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9/entry", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 373, "header": "tr|A0A4X1W4Q9-1|A0A4X1W4Q9_PIG Isoform 1 of Heteroous nuclear ribonucleoprotein A1 OS=Sus scrofa OX=9823 GN=HNRNPA1 PE=1 SV=1 CANONICAL=A0A4X1W4Q9-1" }, "locus": { "chromosome": "5", "start_pos": 19488584, "end_pos": 19485177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058552.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058552.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033484.1" } ] } }, { "isoform_ac": "A0A4X1W4R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4R4/entry", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGMYGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 298, "header": "tr|A0A4X1W4R4-1|A0A4X1W4R4_PIG Computationally mapped isoform of Heteroous nuclear ribonucleoprotein A1 OS=Sus scrofa OX=9823 GN=HNRNPA1 PE=1 SV=1 CANONICAL=A0A4X1W4Q9-1" }, "locus": { "chromosome": "5", "start_pos": 19488584, "end_pos": 19485177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000309.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000309.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000304.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000304.3" } ] } }, { "isoform_ac": "A0A4X1WBR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBR7/entry", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGMYGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 351, "header": "tr|A0A4X1WBR7-1|A0A4X1WBR7_PIG Computationally mapped isoform of Heteroous nuclear ribonucleoprotein A1 OS=Sus scrofa OX=9823 GN=HNRNPA1 PE=1 SV=1 CANONICAL=A0A4X1W4Q9-1" }, "locus": { "chromosome": "5", "start_pos": 19488584, "end_pos": 19485177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071718.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071718.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062027.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062027.1" } ] } }, { "isoform_ac": "A0A5G2QCR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCR1/entry", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 296, "header": "tr|A0A5G2QCR1-1|A0A5G2QCR1_PIG Computationally mapped isoform of Heteroous nuclear ribonucleoprotein A1 OS=Sus scrofa OX=9823 GN=HNRNPA1 PE=1 SV=1 CANONICAL=A0A4X1W4Q9-1" }, "locus": { "chromosome": "5", "start_pos": 19488584, "end_pos": 19485177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075652.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075652.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061356.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061356.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6803529", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803529", "resource": "Reactome", "description": "FGFR2 alternative splicing" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-72203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "resource": "Reactome", "description": "Processing of Capped Intron-Containing Pre-mRNA" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M0H3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 373 }, "evidence": [ { "id": "A0A4X1W4Q9", "url": "https://omabrowser.org/oma/group/A0A4X1W4Q9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZRC6-1", "protein_name": "Heteroous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFGQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASASQRGRSGSGNFGGGRGGGFGGNDNFSRGGNFGGRGGFGGSRGGGYGGGGDGYNGFGNDGYGGSGPGYSGGNRGYGGSSTYDGYNNGGGGFGGGSGGRRPARGPALAVRNGLSEAGTGSNFGGGGGGNYNDFGSYNNQSSNFGPMKGGNFGGRSSGPYGGGESPRGLRAPRGGCTPTPLSLEHFRPPRRLRQLERRRQLRRREEVLTPAGNKA", "length": 403 }, "evidence": [ { "id": "A0A4X1W4Q9", "url": "https://omabrowser.org/oma/group/A0A4X1W4Q9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P04256-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF", "length": 320 }, "evidence": [ { "id": "A0A4X1W4Q9", "url": "https://omabrowser.org/oma/group/A0A4X1W4Q9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07909-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hrb98DE", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVNSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGNDNWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNRRY", "length": 365 }, "evidence": [ { "id": "A0A4X1W4Q9", "url": "https://omabrowser.org/oma/group/A0A4X1W4Q9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "pre-mRNA binding", "id": "GO:0036002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036002", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "G-rich strand telomeric DNA binding", "id": "GO:0098505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "telomeric repeat-containing RNA binding", "id": "GO:0061752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061752", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "miRNA binding", "id": "GO:0035198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035198", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "import into nucleus", "id": "GO:0051170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051170", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "negative regulation of telomere maintenance via telomerase", "id": "GO:0032211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032211", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "positive regulation of telomere maintenance via telomerase", "id": "GO:0032212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032212", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "cellular response to glucose starvation", "id": "GO:0042149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042149", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "nuclear export", "id": "GO:0051168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051168", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "cellular response to sodium arsenite", "id": "GO:1903936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903936", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4Q9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W4Q9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4Q9" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 97, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 221, "end_pos": 223 }, { "start_pos": 321, "end_pos": 323 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4T9-1", "uniprot_ac": "A0A4X1W4T9", "uniprot_id": "A0A4X1W4T9_PIG", "mass": { "chemical_mass": 72138.0, "monoisotopic_mass": 72138.0 }, "refseq": { "ac": "NP_001335331", "name": "sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" }, "gene_names": [ { "name": "SLC6A14", "type": "recommended", "evidence": [ { "id": "A0A4X1W4T9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ] }, { "name": "SLC6A14", "type": "synonym", "evidence": [ { "id": "NP_001335331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" } ] } ], "protein_names": [ { "name": "Transporter", "type": "recommended", "evidence": [ { "id": "A0A4X1W4T9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9/entry#names_and_taxonomy" } ] }, { "name": "amino acid transporter B0", "type": "synonym", "evidence": [ { "id": "NP_001335331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" } ] }, { "name": "sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "type": "synonym", "evidence": [ { "id": "NP_001335331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" } ] }, { "name": "solute carrier family 6 (neurotransmitter transporter), member 14", "type": "synonym", "evidence": [ { "id": "NP_001335331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" } ] } ], "function": [ { "annotation": "These results indicate that SLC6A14 is not a positional candidate gene for the quantitative trait loci affecting fatness and growth traits in pigs.", "evidence": [ { "database": "RefSeq", "id": "NP_001335331", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" }, { "database": "PubMed", "id": "20720304", "url": "https://glygen.org/publication/PubMed/20720304" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC6A14", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9", "locus": { "chromosome": "X", "start_pos": 95527369, "end_pos": 95482456, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022372", "url": "https://www.ensembl.org/id/ENSSSCG00000022372" } ] } } ], "crossref": [ { "id": "A0A4X1W4T9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W4T9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022372", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022372", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11501", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11501", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "431671", "url": "https://www.ncbi.nlm.nih.gov/gene/431671", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:431671", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:431671", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "APNWGPY", "url": "https://omabrowser.org/oma/group/APNWGPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W4T9", "url": "https://www.orthodb.org/?gene=A0A4X1W4T9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616:SF286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616:SF286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-352230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-442660", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442660", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001335331", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GDV0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GDV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GDV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GDV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKJ8", "url": "https://www.uniprot.org/uniprotkb/I3LKJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKJ8-1", "url": "https://www.uniprot.org/uniprotkb/I3LKJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRLKCPSFFKCRGKEKVTASSEDFHIRENDENQDRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWENCSYWADENCSRSPIVTHCNVSIRSNEIFQMNKSWVDANNLTCINGSEVYQPGQLPSEQYWNKVALQRSSGMDETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTAIFPYVVLLILLIRGATLDGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIVVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLGLDSQFASIETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAAILELIGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLIAILIWSLVQFHRPDYAKIPYPDWGVALGWCMIIFCIIWIPIMAIIKIIQAEGNIFQRIVSCCRPASNWGPYLERHRGERYKNMVDPKKETDHEIPTVSGSRKPE", "length": 639, "header": "tr|A0A4X1W4T9-1|A0A4X1W4T9_PIG Isoform 1 of Transporter OS=Sus scrofa OX=9823 GN=SLC6A14 PE=3 SV=1 CANONICAL=A0A4X1W4T9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9/entry", "sequence": { "sequence": "MDRLKCPSFFKCRGKEKVTASSEDFHIRENDENQDRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWENCSYWADENCSRSPIVTHCNVSIRSNEIFQMNKSWVDANNLTCINGSEVYQPGQLPSEQYWNKVALQRSSGMDETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTAIFPYVVLLILLIRGATLDGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIVVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLGLDSQFASIETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAAILELIGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLIAILIWSLVQFHRPDYAKIPYPDWGVALGWCMIIFCIIWIPIMAIIKIIQAEGNIFQRIVSCCRPASNWGPYLERHRGERYKNMVDPKKETDHEIPTVSGSRKPE", "length": 639, "header": "tr|A0A4X1W4T9-1|A0A4X1W4T9_PIG Isoform 1 of Transporter OS=Sus scrofa OX=9823 GN=SLC6A14 PE=3 SV=1 CANONICAL=A0A4X1W4T9-1" }, "locus": { "chromosome": "X", "start_pos": 95506768, "end_pos": 95482551, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033120.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033120.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029582.1", "url": "https://www.ensembl.org/id/ENSSSCP00000029582.1" } ] } }, { "isoform_ac": "A0A8D1GDV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GDV0/entry", "sequence": { "sequence": "QVCLRCPNRKVTASSEDFHIRENDENQDRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWENCSYWADENCSRSPIVTHCNVSIRSNEIFQMNKSWVDANNLTCINGSEVYQPGQLPSEQYWNKVALQRSSGMDETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTAIFPYVVLLILLIRGATLDGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIVVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLGLDSQFASIETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAAILELIGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLIAILIWSLVQFHRPDYAKIPYPDWGVALGWCMIIFCIIWIPIMAIIKIIQAEGNIFQRIVSCCRPASNWGPYLERHRGERYKNMVDPKKETDHEIPTVSGSRKPE", "length": 632, "header": "tr|A0A8D1GDV0-1|A0A8D1GDV0_PIG Computationally mapped isoform of Transporter OS=Sus scrofa OX=9823 GN=SLC6A14 PE=3 SV=1 CANONICAL=A0A4X1W4T9-1" }, "locus": { "chromosome": "X", "start_pos": 95506768, "end_pos": 95482723, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079637.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079637.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059826.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059826.1" } ] } }, { "isoform_ac": "I3LKJ8-1", "url": "https://www.uniprot.org/uniprotkb/I3LKJ8/entry", "sequence": { "sequence": "MDRLKCPSFFKCRGKEKVTASSEDFHIRENDENQDRGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYNNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSKLPWENCSYWADENCSRSPIVTHCNVSIRSNEIFQMNKSWVDANNLTCINGSEVYQPGQLPSEQYWNKVALQRSSGMDETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTAIFPYVVLLILLIRGATLDGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIVVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLGLDSQFASIETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAAILELIGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLIAILIWSLVQFHRPDYAKIPYPDWGVALGWCMIIFCIIWIPIMAIIKIIQAEGNIFQRIVSCCRPASNWGPYLERHRGERYKNMDPIQEKLHLAIMSPYASLDCQVFWAFYWSFYFFFKSVSLLRDYYVPHSAGQFHLCYVN", "length": 676, "header": "tr|I3LKJ8-1|I3LKJ8_PIG Computationally mapped isoform of Transporter OS=Sus scrofa OX=9823 GN=SLC6A14 PE=3 SV=2 CANONICAL=A0A4X1W4T9-1" }, "locus": { "chromosome": "X", "start_pos": 95527337, "end_pos": 95482551, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032445.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032445.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024612.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024612.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Isolation and molecular characterization of the porcine SLC6A14 gene excludes it as a candidate gene for fat deposition and growth.", "journal": "Journal of applied genetics", "date": "2010", "authors": "L Yang G, Ren J, H Zhang S, Huang W B, Guo Y M, Y Duan Y, Liu M Z, Huang L S", "evidence": [ { "database": "RefSeq", "id": "NP_001335331", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335331" } ], "reference": [ { "type": "PubMed", "id": "20720304", "url": "https://glygen.org/publication/PubMed/20720304" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:431671", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:431671", "resource": "KEGG Pathway" }, { "id": "R-SSC-352230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "resource": "Reactome", "description": "Amino acid transport across the plasma membrane" }, { "id": "R-SSC-442660", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442660", "resource": "Reactome", "description": "SLC-mediated transport of neurotransmitters" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z5E7-1", "protein_name": "Transporter", "gene_name": "SLC6A14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKGDRWAGNCSCGRKEDFNLSNEKDAHASDNDENSDRGNWSNKADYLLSMVGYAVGLGNVWRFPYLTYQNGGGAFLIPYTLMLALAGLPLFFMECSLGQFASLGPISIWRILPLFQGVGVTMVIISTFVAIYYNVIIAYALYYLFASFQKVLPWSDCFSWADEFCSKTRLVNDCSAVLDGQIIHANYSFIASNNLTCLNDTINYKPVQFPSEQYWNKVALQRSSGLDETGNIVWYLALCLLLSWMIVGAALFKGIKSSGKVVYFTALFPYVILLILLVRGATLEGALDGIEYYIGKQSNITKLMEAEVWKDAATQIFYSLSVAWGGLVALSSYNKFHNNCYSDAIFVCVTNCLTSVFAGFAIFSVLGHMAFVLKRPVSEVVDSGFDLAFVAYPEALSKLPVSPLWSFLFFFMLLLLGLDSQFATIETLTTTIQDIYPKMMKKLRIPITLGVCVLLFFLGLICVTQAGIYWVNLIDHFCAGWGILFAAVLEIIGIVYIYGGNRFIEDIEMMIGKKSCFFWMWWRMCWFFITPVLLVAILVWSLVTFSAPTYGSVLYPTWGTAVGWCMIIFCVIWIPIVAVVKILKAEGNLFQRIASCCRPTANWGPYLECHRGERYSHVVTPKKEKEHEIPTVSGFTYFRE", "length": 640 }, "evidence": [ { "id": "A0A4X1W4T9", "url": "https://omabrowser.org/oma/group/A0A4X1W4T9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6NN04-1", "protein_name": "Transporter", "gene_name": "slc6a14", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKDYSLKNIRGVLFKNSVGDEQDKDKSDKAEHVVQNDENSDRGNWSSKREYMLSMIGYAVGLGNVWRFPYLAYKHGGGAFLIPYTIMLAVSGLPLFFMESSFGQFCSQGPINVWKAVPILQGVGITMMLVSTFVAIYYNVIIAYSIYYLFASFQDPLPWSIKNCNTTASNISTAAVNVSCGQISGQSLSEKYWDEVALQRSSSMDETGPVVWHLALCLLLSWILVGAALFKGIKSSGKVVYFTATFPYIVLLILLIRGATLEGAKDGIEFYIGSQSNLTKLAEAEVWKDAATQIFFSLSIAWGGLMALSSYNKFYNNCYQDSIVVCVTNCGTSIFAGFAIFSVLGHMAHVYQRPVSEVADAGFALAFIAYPDALSKLPISPLWSILFFFMLITLGLDSQFAGIEVISTCLLDAYPEVLKSKRGLVTTAVCIILFLLGLPCVTRAGIYWVNLIDTFSAGWILLVAGLLEVLGLCILYGGNRFIKDIEMMIGTKSSLFWLWWRACWFFITPVVLSIILIWSLYTFTSPTYSSVAYPDWGISLGWCITAFSLMWIPIVAVWKVCKARGGLWQRIKSACSPTEDWGPYLECHRGERYGTRGETDPNIFVISNKVSTRL", "length": 614 }, "evidence": [ { "id": "A0A4X1W4T9", "url": "https://omabrowser.org/oma/group/A0A4X1W4T9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9JMA9-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "Slc6a14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDRLKCPNFFKCRQKEKVTASSENFHVGENDENQERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISVFVAIYYNVIIAYSLYYLFASFQSVLPWANCSSWADENCSRTPIVTGCNVSIGAGEMFMNISWVNTNNLTCLNGSEVFRPGQLPSEQYWDKVTLQRSSGMDETGVVVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTALFPYVVLLILLIRGATLEGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIIVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPAGPFWSILFFFMLLTLGLDSQFASIETITTTFQDLFPKAMKRMRVPITLGCCLILFLLGLLCVTQAGIYWVHLIDHFCAGWGILIAAILEIAGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLSAILVWSLVKFHRPDYADIPYPDWGVALGWCMIIFCIIWIPIMAIIKIVQAEGNILQRIISCCRPASNWGPYLEKHRGERYRDMAEPAKETDHEIPTISGSTKPE", "length": 638 }, "evidence": [ { "id": "A0A4X1W4T9", "url": "https://omabrowser.org/oma/group/A0A4X1W4T9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UN76-1", "protein_name": "Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)", "gene_name": "SLC6A14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDKLKCPSFFKCREKEKVSASSENFHVGENDENQDRGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYSNGGGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSLYYMFASFQSELPWKNCSSWSDKNCSRSPIVTHCNVSTVNKGIQEIIQMNKSWVDINNFTCINGSEIYQPGQLPSEQYWNKVALQRSSGMNETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTALFPYVVLLILLVRGATLEGASKGISYYIGAQSNFTKLKEAEVWKDAATQIFYSLSVAWGGLVALSSYNKFKNNCFSDAIVVCLTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLGLDSQFASIETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAAILELVGIIWIYGGNRFIEDTEMMIGAKRWIFWLWWRACWFVITPILLIAIFIWSLVQFHRPNYGAIPYPDWGVALGWCMIVFCIIWIPIMAIIKIIQAKGNIFQRLISCCRPASNWGPYLEQHRGERYKDMVDPKKEADHEIPTVSGSRKPE", "length": 642 }, "evidence": [ { "id": "A0A4X1W4T9", "url": "https://omabrowser.org/oma/group/A0A4X1W4T9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "sodium ion transmembrane transport", "id": "GO:0035725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035725", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "glycine import across plasma membrane", "id": "GO:1903804", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903804", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "(R)-carnitine transmembrane transport", "id": "GO:1902270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "beta-alanine transport", "id": "GO:0001762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001762", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "alanine transmembrane transporter activity", "id": "GO:0022858", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022858", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "(R)-carnitine transmembrane transporter activity", "id": "GO:1901235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901235", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "beta-alanine transmembrane transporter activity", "id": "GO:0001761", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001761", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "neutral, basic amino acid:sodium:chloride symporter activity", "id": "GO:0015374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015374", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "branched-chain amino acid:sodium symporter activity", "id": "GO:0015657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015657", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4T9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 174, "end_pos": 176 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 194, "end_pos": 196 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 38, "end_pos": 40 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W4X2-1", "uniprot_ac": "A0A4X1W4X2", "uniprot_id": "A0A4X1W4X2_PIG", "mass": { "chemical_mass": 25609.0, "monoisotopic_mass": 25609.0 }, "refseq": {}, "gene_names": [ { "name": "MOB3C", "type": "recommended", "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ] } ], "protein_names": [ { "name": "MOB kinase activator 3C", "type": "synonym", "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MOB3C", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2", "locus": { "chromosome": "6", "start_pos": 164887492, "end_pos": 164875674, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003897", "url": "https://www.ensembl.org/id/ENSSSCG00000003897" } ] } } ], "crossref": [ { "id": "A0A4X1W4X2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W4X2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003897", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003897", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738460", "url": "https://www.ncbi.nlm.nih.gov/gene/100738460", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AEHCSET", "url": "https://omabrowser.org/oma/group/AEHCSET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3W5", "url": "https://www.uniprot.org/uniprotkb/F1S3W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3W5-1", "url": "https://www.uniprot.org/uniprotkb/F1S3W5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH", "length": 216, "header": "tr|A0A4X1W4X2-1|A0A4X1W4X2_PIG Isoform 1 of MOB kinase activator 3C OS=Sus scrofa OX=9823 GN=MOB3C PE=4 SV=1 CANONICAL=A0A4X1W4X2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2/entry", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH", "length": 216, "header": "tr|A0A4X1W4X2-1|A0A4X1W4X2_PIG Isoform 1 of MOB kinase activator 3C OS=Sus scrofa OX=9823 GN=MOB3C PE=4 SV=1 CANONICAL=A0A4X1W4X2-1" }, "locus": { "chromosome": "6", "start_pos": 164882396, "end_pos": 164879096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066286.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066286.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058719.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058719.1" } ] } }, { "isoform_ac": "F1S3W5-1", "url": "https://www.uniprot.org/uniprotkb/F1S3W5/entry", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGPGPFLWWSLWHVSLRGAAMWCKKGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH", "length": 240, "header": "tr|F1S3W5-1|F1S3W5_PIG Computationally mapped isoform of MOB kinase activator 3C OS=Sus scrofa OX=9823 GN=MOB3C PE=4 SV=3 CANONICAL=A0A4X1W4X2-1" }, "locus": { "chromosome": "6", "start_pos": 164882396, "end_pos": 164879096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004311.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004311.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004211.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004211.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZP72-1", "protein_name": "MOB kinase activator 3C", "gene_name": "Mob3c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRRVVRLPPGESIDDWIAVHVVDFFNRINLIYGTMAEHCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIQEFSLVDQRELEPLREMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GYU6-1", "protein_name": "MOB kinase activator 3C", "gene_name": "Mob3c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGESIDDWIAVHVVDFFNRINLIYGTMAEHCSEASCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIQEFSLVDQRELEPLREMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54BM4-1", "protein_name": "MOB kinase activator-like 1 homolog C", "gene_name": "mobC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFKIFGSKAQTFKPKKSIKKGTKQYELHQKIKETLGSGDLTDAIKLPPDETLFEWLSVNTIDFFNQSNLLYGSITEFCTPKYCPSMSAGPQYEFLWADGKEIKKPIRVSAPAYVDYLMTWIQVQLDDEDIFPTKPTEDMPKNFLPTIKAIFKRLFRVYAHIYYSHMDRVSVLGVEAHLNTAFRHFYLFIKEFNLVDKKEMLPLQNIIDKINARKDI", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5EAA4-1", "protein_name": "MOB kinase activator 3C", "gene_name": "MOB3C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALCLKQVFSKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIESLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q70IA8-1", "protein_name": "MOB kinase activator 3C", "gene_name": "MOB3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEEVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BJG4-1", "protein_name": "MOB kinase activator 3C", "gene_name": "Mob3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGESIDDWIAVHVVDFFNRINLIYGTMAEHCSESSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEDVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIQEFSLVDQRELEPLREMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GHU8-1", "protein_name": "MOB kinase activator 3C", "gene_name": "MOB3C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALCLKQVFNKDKTFRPRKKFEPGTQRFELYKKAQASLKSGLDLKAVVQLPPGESINDWIAVHVVDFFNRINLIYGTMSEYCTEKSCPIMSGGLKYEYRWQDDSKYKKPTKLSAPQYMCMLMDWIEMLINNEDIFPTRIGVPFPKQFQQVCTKILTRLFRVFVHVYIHHFDSIINMGAEAHVNTCYKHFYYFIREFSLVDHRELEPLKEMTERICH", "length": 216 }, "evidence": [ { "id": "A0A4X1W4X2", "url": "https://omabrowser.org/oma/group/A0A4X1W4X2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "pmid": "" }, { "name": "protein kinase activator activity", "id": "GO:0030295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030295", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 164, "amino_acid": "His", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 164, "end_pos": 164, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 169, "amino_acid": "His", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 169, "end_pos": 169, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 188, "amino_acid": "His", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 188, "end_pos": 188, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 193, "amino_acid": "Ile", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 193, "end_pos": 193, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 82, "amino_acid": "Cys", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 82, "end_pos": 82, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W4X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4X2" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 87, "amino_acid": "Cys", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 87, "end_pos": 87, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W5S2-1", "uniprot_ac": "A0A4X1W5S2", "uniprot_id": "A0A4X1W5S2_PIG", "mass": { "chemical_mass": 63869.0, "monoisotopic_mass": 63869.0 }, "refseq": { "ac": "XP_003126362", "name": "rho guanine nucleotide exchange factor 25 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126362" }, "gene_names": [ { "name": "ARHGEF25", "type": "recommended", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ] }, { "name": "ARHGEF25", "type": "synonym", "evidence": [ { "id": "XP_003126362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126362" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 25", "type": "recommended", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry#names_and_taxonomy" } ] }, { "name": "Guanine nucleotide exchange factor GEFT", "type": "synonym", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry#names_and_taxonomy" } ] }, { "name": "Rac/Cdc42/Rho exchange factor GEFT", "type": "synonym", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry#names_and_taxonomy" } ] }, { "name": "RhoA/Rac/Cdc42 guanine nucleotide exchange factor GEFT", "type": "synonym", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry#names_and_taxonomy" } ] }, { "name": "p63RhoGEF", "type": "synonym", "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 25 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003126362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126362" } ] } ], "function": [ { "annotation": "May play a role in actin cytoskeleton reorganization in different tissues since its activation induces formation of actin stress fibers. It works as a guanine nucleotide exchange factor for Rho family of small GTPases. Links specifically G alpha q/11-coupled receptors to RHOA activation. May be an important regulator of processes involved in axon and dendrite formation. In neurons seems to be an exchange factor primarily for RAC1. Involved in skeletal myogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2#function" }, { "database": "UniProtKB", "id": "ARBA00054609", "url": "https://www.uniprot.org/uniprotkb/ARBA00054609#function" }, { "database": "UniProtKB", "id": "F1SKH1", "url": "https://www.uniprot.org/uniprotkb/F1SKH1#function" }, { "database": "UniProtKB", "id": "F1SKH7", "url": "https://www.uniprot.org/uniprotkb/F1SKH7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGEF25", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2", "locus": { "chromosome": "5", "start_pos": 22880827, "end_pos": 22873736, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000435", "url": "https://www.ensembl.org/id/ENSSSCG00000000435" } ] } } ], "crossref": [ { "id": "A0A4X1W5S2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W5S2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000435", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000435", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13241", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13241", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517400", "url": "https://www.ncbi.nlm.nih.gov/gene/100517400", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517400", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W5S2", "url": "https://www.orthodb.org/?gene=A0A4X1W5S2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SKH1", "url": "https://www.orthodb.org/?gene=F1SKH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SKH7", "url": "https://www.orthodb.org/?gene=F1SKH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22826", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22826", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22826:SF117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22826:SF117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKH1", "url": "https://www.uniprot.org/uniprotkb/F1SKH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKH7", "url": "https://www.uniprot.org/uniprotkb/F1SKH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGGQKGGRCACPHVIRKVLAKCGCCFARGGRESYSIAGSEGSISASAASGLAAPSGPSSGLSSGPCSPGPPGPVSGLRRWLDHSKHCLSVETEGDGGQAGPYENWMLEPAPATGEELPELTLLTTLLGGPQDKTQPPEEETLSQASENEEEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPENLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYSRAGMDTEELEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIVIFSEALGGGVRGGTQPGYVYKSSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQTADPAVSQAWIKQVAQILESQRDFLNALQSPIEYQRRESQTNSLGRPGGPRVGSPGRIRPGDQAQVSTHTPINGSLPSLLLLPEGEVARAPPPLDTQALSDIPQAPHDSPPVPPIPNTPPCQARLAKLDEDEL", "length": 580, "header": "tr|A0A4X1W5S2-1|A0A4X1W5S2_PIG Isoform 1 of Rho guanine nucleotide exchange factor 25 OS=Sus scrofa OX=9823 GN=ARHGEF25 PE=4 SV=1 CANONICAL=A0A4X1W5S2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W5S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2/entry", "sequence": { "sequence": "MRGGQKGGRCACPHVIRKVLAKCGCCFARGGRESYSIAGSEGSISASAASGLAAPSGPSSGLSSGPCSPGPPGPVSGLRRWLDHSKHCLSVETEGDGGQAGPYENWMLEPAPATGEELPELTLLTTLLGGPQDKTQPPEEETLSQASENEEEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPENLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYSRAGMDTEELEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIVIFSEALGGGVRGGTQPGYVYKSSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQTADPAVSQAWIKQVAQILESQRDFLNALQSPIEYQRRESQTNSLGRPGGPRVGSPGRIRPGDQAQVSTHTPINGSLPSLLLLPEGEVARAPPPLDTQALSDIPQAPHDSPPVPPIPNTPPCQARLAKLDEDEL", "length": 580, "header": "tr|A0A4X1W5S2-1|A0A4X1W5S2_PIG Isoform 1 of Rho guanine nucleotide exchange factor 25 OS=Sus scrofa OX=9823 GN=ARHGEF25 PE=4 SV=1 CANONICAL=A0A4X1W5S2-1" }, "locus": { "chromosome": "5", "start_pos": 22880476, "end_pos": 22875565, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057246.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057246.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054690.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054690.2" } ] } }, { "isoform_ac": "F1SKH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKH1/entry", "sequence": { "sequence": "MKPPDRPAPGRTDRILGVMGGMLRACALPGQEWPPKRSPLGPGAAEPESICTERDQRDQRGEREREVPAWARLPESYSIAGSEGSISASAASGLAAPSGPSSGLSSGPCSPGPPGPVSGLRRWLDHSKHCLSVETEGDGGQAGPYEPPEEETLSQASENEEEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPENLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYSRAGMDTEELEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIVIFSEALGGGVRGGTQPGYVYKSSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQTADPAVSQAWIKQVAQILESQRDFLNALQSPIEYQRRESQTNSLGRPGGPRVGSPGRIRPGDQAQVSTHTPINGSLPSLLLLPEGEVARAPPPLDTQALSDIPQAPHDSPPVPPIPNTPPCQARLAKLDEDEL", "length": 590, "header": "tr|F1SKH1-1|F1SKH1_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 25 OS=Sus scrofa OX=9823 GN=ARHGEF25 PE=4 SV=3 CANONICAL=A0A4X1W5S2-1" }, "locus": { "chromosome": "5", "start_pos": 22880476, "end_pos": 22873838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000476.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000476.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000469.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000469.3" } ] } }, { "isoform_ac": "F1SKH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKH7/entry", "sequence": { "sequence": "MKPPDRPAPGRTDRILGVMGGMLRACALPGQEWPPKRSPLGPGAAEPESICTERDQRDQRGEREREVPAWARLPESYSIAGSEGSISASAASGLAAPSGPSSGLSSGPCSPGPPGPVSGLRRWLDHSKHCLSVETEGDGGQAGPYENWMLEPAPATGEELPELTLLTTLLGGPQDKTQPPEEETLSQASENEEEQKKKALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPENLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYSRAGMDTEELEQAVEVMCFVPKRCNDMMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIVIFSEALGGGVRGGTQPGYVYKSSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQTADPAVSQAWIKQVAQILESQRDFLNALQSPIEYQRRESQTNSLGRPGGPRVGSPGRIRPGDQAQVSTHTPINGSLPSLLLLPEGEVARAPPPLDTQALSDIPQAPHDSPPVPPIPNTPPCQARLAKLDEDEL", "length": 622, "header": "tr|F1SKH7-1|F1SKH7_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 25 OS=Sus scrofa OX=9823 GN=ARHGEF25 PE=4 SV=2 CANONICAL=A0A4X1W5S2-1" }, "locus": { "chromosome": "5", "start_pos": 22880476, "end_pos": 22873838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038624.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038624.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049410.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049410.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517400", "resource": "KEGG Pathway" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" }, { "name": "sarcomere", "id": "GO:0030017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030017", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" }, { "name": "extrinsic component of membrane", "id": "GO:0019898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019898", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5S2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W5S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5S2" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 336, "start_aa": "Arg", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 520, "end_pos": 522 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W5X2-1", "uniprot_ac": "A0A4X1W5X2", "uniprot_id": "A0A4X1W5X2_PIG", "mass": { "chemical_mass": 18913.0, "monoisotopic_mass": 18913.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W5X2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2", "locus": {} } ], "crossref": [ { "id": "A0A4X1W5X2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W5X2", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1W5X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMQEKINAVLAHVMPLLLPLPPVPLLPALQLLTRKAQHQERLLQPPQTPVAGPTSLIERYCWGTDEADKATGHKAQSPVTPQTKGAMTAQVVIEIAPGIHLVPGNRVFHHRHQETLVNRARLTPKGPMELEPARSPAHPSPCS", "length": 173, "header": "tr|A0A4X1W5X2-1|A0A4X1W5X2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W5X2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W5X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2/entry", "sequence": { "sequence": "MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMQEKINAVLAHVMPLLLPLPPVPLLPALQLLTRKAQHQERLLQPPQTPVAGPTSLIERYCWGTDEADKATGHKAQSPVTPQTKGAMTAQVVIEIAPGIHLVPGNRVFHHRHQETLVNRARLTPKGPMELEPARSPAHPSPCS", "length": 173, "header": "tr|A0A4X1W5X2-1|A0A4X1W5X2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W5X2-1" }, "locus": { "chromosome": "3", "start_pos": 80128623, "end_pos": 80127065, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060024.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060024.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057059.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057059.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 110, "start_aa": "Thr", "end_pos": 110, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr110", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5X2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 110 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W6C1-1", "uniprot_ac": "A0A4X1W6C1", "uniprot_id": "A0A4X1W6C1_PIG", "mass": { "chemical_mass": 190744.0, "monoisotopic_mass": 190744.0 }, "refseq": { "ac": "XP_020947582", "name": "protein MON2 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947582" }, "gene_names": [ { "name": "MON2", "type": "recommended", "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ] }, { "name": "MON2", "type": "synonym", "evidence": [ { "id": "XP_020947582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947582" } ] } ], "protein_names": [ { "name": "Protein MON2 homolog", "type": "recommended", "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1/entry#names_and_taxonomy" } ] }, { "name": "protein MON2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947582" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MON2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1", "locus": { "chromosome": "5", "start_pos": 27242399, "end_pos": 27126121, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000458", "url": "https://www.ensembl.org/id/ENSSSCG00000000458" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000458", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000458", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154568", "url": "https://www.ncbi.nlm.nih.gov/gene/100154568", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154568", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154568", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W6C1", "url": "https://www.orthodb.org/?gene=A0A4X1W6C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16206", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZIN5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZN68", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSW3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQM3", "url": "https://www.uniprot.org/uniprotkb/A0A287BQM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W6C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLV8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASKVQNGES", "length": 1722, "header": "tr|A0A4X1W6C1-1|A0A4X1W6C1_PIG Isoform 1 of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=1 CANONICAL=A0A4X1W6C1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIN5/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRYICMYICI", "length": 1648, "header": "tr|A0A286ZIN5-1|A0A286ZIN5_PIG Computationally mapped isoform of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=2 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27226202, "end_pos": 27126536, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041357.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041357.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031380.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031380.2" } ] } }, { "isoform_ac": "A0A286ZN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN68/entry", "sequence": { "sequence": "KALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASKVQNGES", "length": 1664, "header": "tr|A0A286ZN68-1|A0A286ZN68_PIG Computationally mapped isoform of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=3 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27240524, "end_pos": 27152065, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047696.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047696.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032903.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032903.3" } ] } }, { "isoform_ac": "A0A286ZSW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSW3/entry", "sequence": { "sequence": "ISWAAPTAHGALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASKVQNGES", "length": 1667, "header": "tr|A0A286ZSW3-1|A0A286ZSW3_PIG Computationally mapped isoform of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=2 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27240524, "end_pos": 27151465, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039671.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039671.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034727.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034727.2" } ] } }, { "isoform_ac": "A0A287BQM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQM3/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKHSWTLFRKLFF", "length": 1456, "header": "tr|A0A287BQM3-1|A0A287BQM3_PIG Computationally mapped isoform of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=1 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27211484, "end_pos": 27126536, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050175.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050175.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058737.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058737.1" } ] } }, { "isoform_ac": "A0A4X1W6C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEKVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASKVQNGES", "length": 1722, "header": "tr|A0A4X1W6C1-1|A0A4X1W6C1_PIG Isoform 1 of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=1 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27240524, "end_pos": 27126536, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106817.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106817.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074959.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074959.1" } ] } }, { "isoform_ac": "A0A8W4FLV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLV8/entry", "sequence": { "sequence": "MSGTNSPEAVKKLLENMQSDLRALSLECKKKFPPVKEAAESGIIKVKTIAARNTEILAALKDNSSEVVQPFLMGCGTKEPKITQLCLAAIQRLMSHEVVSETAAGNIINMLWQLMENSLEELKLLQTVLVLLTTNTVVHDEALSKAIVLCFRLHFTKDNITNNTAAATVRQVVTVVFERMVAEDERHRDIIEQPVLVQGNSNRRSVSTLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRLCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPTGNPATTNQAGNNNSAGPVSAPANSGMLGIGGGVTLLPAFEYRGTWIPILTVTVQGSAKATYLEMLDKVEPPTIPEGYAMSVAFHCLLDLVRGITTMIEGELGEVETECLTTTTEAVSSPTQSSSEQQEFQSTSDQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAMCKGSLPPHYALTVLNTTTAATLSNKSYSIQGQNVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSSINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHPAPPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPAVNVPVPVLIGSISGPGLNRPFVRTDSIGERLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPVTFDKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAVSVPISSDASPFILPSYTEAVLTSLQEAVLTALDVLQKAICIGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAPAEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLKVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNESIDVEVVQLISTEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKKTQPENAYIHLVQISHHFL", "length": 1680, "header": "tr|A0A8W4FLV8-1|A0A8W4FLV8_PIG Computationally mapped isoform of Protein MON2 homolog OS=Sus scrofa OX=9823 GN=MON2 PE=1 SV=1 CANONICAL=A0A4X1W6C1-1" }, "locus": { "chromosome": "5", "start_pos": 27234598, "end_pos": 27126536, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104584.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104584.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080324.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080324.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154568", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154568", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" }, { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" }, { "name": "protein targeting to vacuole", "id": "GO:0006623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006623", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1515, "end_pos": 1517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1524, "end_pos": 1526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 625, "end_pos": 627, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 966, "end_pos": 968, "annotation": "n_glycosylation_sequon" }, { "start_pos": 977, "end_pos": 979, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" }, { "id": "PF16206", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16206" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 937, "end_pos": 1713, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" }, { "id": "PF09324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like HDS", "eco_id": "ECO_0000259", "start_pos": 854, "end_pos": 933, "start_aa": "His", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" }, { "id": "PF12783", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like HUS", "eco_id": "ECO_0000259", "start_pos": 212, "end_pos": 385, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W6C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6C1" }, { "id": "PF16213", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mon2/Sec7/BIG1-like dimerisation and cyclophilin-binding", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 184, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1515, "end_pos": 1517 }, { "start_pos": 1524, "end_pos": 1526 }, { "start_pos": 159, "end_pos": 161 }, { "start_pos": 162, "end_pos": 164 }, { "start_pos": 418, "end_pos": 420 }, { "start_pos": 625, "end_pos": 627 }, { "start_pos": 634, "end_pos": 636 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 966, "end_pos": 968 }, { "start_pos": 977, "end_pos": 979 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W6J0-1", "uniprot_ac": "A0A4X1W6J0", "uniprot_id": "A0A4X1W6J0_PIG", "mass": { "chemical_mass": 40796.0, "monoisotopic_mass": 40796.0 }, "refseq": { "ac": "XP_020953494", "name": "actin-like protein 8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953494" }, "gene_names": [ { "name": "ACTL8", "type": "recommended", "evidence": [ { "id": "A0A4X1W6J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ] }, { "name": "ACTL8", "type": "synonym", "evidence": [ { "id": "XP_020953494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953494" } ] } ], "protein_names": [ { "name": "Actin like 8", "type": "synonym", "evidence": [ { "id": "A0A4X1W6J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0/entry#names_and_taxonomy" } ] }, { "name": "actin-like protein 8", "type": "synonym", "evidence": [ { "id": "XP_020953494", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953494" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0", "locus": { "chromosome": "6", "start_pos": 76358782, "end_pos": 76286086, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024062", "url": "https://www.ensembl.org/id/ENSSSCG00000024062" } ] } } ], "crossref": [ { "id": "A0A4X1W6J0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W6J0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100622307", "url": "https://www.ncbi.nlm.nih.gov/gene/100622307", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622307", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622307", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W6J0", "url": "https://www.orthodb.org/?gene=A0A4X1W6J0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020953494", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953494", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W6J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARTIIIDHGSGFLKSGLAGWNEPQLIFPSIVNYIPCRENPGPSYARRRVSLGIDMCRPDTFSYPVQRGRVLNWEGVEHLWSFVLEKHRQEHDDSPVMVTESPLKEPGDRQKTLEIMFELLDVPSVLLADQLEMSLYASGLLSGVVVDSGYGLSRVQPFHLGRPLRSSAKTLEFAGQDLSAYLFKSLFKENVDQHNLFQLETVSTTQMNKCYVPQNLGEALDFCQNLPRGSDESNTYRLPDGTCVELTPLQRLAPEMFFSPQVFDMQGPSISQVALESIETCEAALQPLLVSHLVACGGNTLYPGFTKRLCKLVADHFCSSHASVWMGSNRNFSVWLGASIVAHLSTYKAGWLTREEYDESLKP", "length": 365, "header": "tr|A0A4X1W6J0-1|A0A4X1W6J0_PIG Isoform 1 of Actin like 8 OS=Sus scrofa OX=9823 GN=ACTL8 PE=3 SV=1 CANONICAL=A0A4X1W6J0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W6J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0/entry", "sequence": { "sequence": "MAARTIIIDHGSGFLKSGLAGWNEPQLIFPSIVNYIPCRENPGPSYARRRVSLGIDMCRPDTFSYPVQRGRVLNWEGVEHLWSFVLEKHRQEHDDSPVMVTESPLKEPGDRQKTLEIMFELLDVPSVLLADQLEMSLYASGLLSGVVVDSGYGLSRVQPFHLGRPLRSSAKTLEFAGQDLSAYLFKSLFKENVDQHNLFQLETVSTTQMNKCYVPQNLGEALDFCQNLPRGSDESNTYRLPDGTCVELTPLQRLAPEMFFSPQVFDMQGPSISQVALESIETCEAALQPLLVSHLVACGGNTLYPGFTKRLCKLVADHFCSSHASVWMGSNRNFSVWLGASIVAHLSTYKAGWLTREEYDESLKP", "length": 365, "header": "tr|A0A4X1W6J0-1|A0A4X1W6J0_PIG Isoform 1 of Actin like 8 OS=Sus scrofa OX=9823 GN=ACTL8 PE=3 SV=1 CANONICAL=A0A4X1W6J0-1" }, "locus": { "chromosome": "6", "start_pos": 76358457, "end_pos": 76354761, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027644.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027644.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019851.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019851.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622307", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622307", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "NuA4 histone acetyltransferase complex", "id": "GO:0035267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "axonogenesis", "id": "GO:0007409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007409", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "cell motility", "id": "GO:0048870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048870", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" }, { "name": "structural constituent of postsynaptic actin cytoskeleton", "id": "GO:0098973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098973", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W6J7-1", "uniprot_ac": "A0A4X1W6J7", "uniprot_id": "A0A4X1W6J7_PIG", "mass": { "chemical_mass": 18770.0, "monoisotopic_mass": 18770.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W6J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7", "locus": {} } ], "crossref": [ { "id": "A0A4X1W6J7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W6J7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKQMEED", "url": "https://omabrowser.org/oma/group/WKQMEED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11691", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11691", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11691:SF61", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11691:SF61", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00143", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00143", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W6J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQIYLLVAGVMLCSATTCSLGQNLSGIPSQVKGKMSTYLRLMKKIPSMTQATRYHHLILQQIGNLLNIEESRAAWNNTLFDQLLSQLHHSLEQLWKQMEEDNLACPYLEIVVQKYFQRIYSYPKEKGYSLCGWEIVRVKIEVCLSRRRHPHGSSCGLLSLGCH", "length": 164, "header": "tr|A0A4X1W6J7-1|A0A4X1W6J7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1W6J7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W6J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7/entry", "sequence": { "sequence": "MAQIYLLVAGVMLCSATTCSLGQNLSGIPSQVKGKMSTYLRLMKKIPSMTQATRYHHLILQQIGNLLNIEESRAAWNNTLFDQLLSQLHHSLEQLWKQMEEDNLACPYLEIVVQKYFQRIYSYPKEKGYSLCGWEIVRVKIEVCLSRRRHPHGSSCGLLSLGCH", "length": 164, "header": "tr|A0A4X1W6J7-1|A0A4X1W6J7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1W6J7-1" }, "locus": { "chromosome": "1", "start_pos": 201501095, "end_pos": 201496807, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055160.1", "url": "https://www.ensembl.org/id/ENSSSCT00000055160.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054175.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054175.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "B1AYH9-1", "protein_name": "Predicted gene 13271", "gene_name": "Gm13271", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLEHSETPRFLAELRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQTLRHVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRVFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A4X1W6J7", "url": "https://omabrowser.org/oma/group/A0A4X1W6J7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "B cell activation involved in immune response", "id": "GO:0002312", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002312", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "type I interferon-mediated signaling pathway", "id": "GO:0060337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060337", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "response to exogenous dsRNA", "id": "GO:0043330", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043330", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "humoral immune response", "id": "GO:0006959", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006959", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "T cell activation involved in immune response", "id": "GO:0002286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002286", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "natural killer cell activation involved in immune response", "id": "GO:0002323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002323", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" }, { "name": "type I interferon receptor binding", "id": "GO:0005132", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005132", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6J7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6J7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 24, "end_pos": 26 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W6N4-1", "uniprot_ac": "A0A4X1W6N4", "uniprot_id": "A0A4X1W6N4_PIG", "mass": { "chemical_mass": 20193.0, "monoisotopic_mass": 20193.0 }, "refseq": {}, "gene_names": [ { "name": "NUP62CL", "type": "recommended", "evidence": [ { "id": "A0A4X1W6N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ] } ], "protein_names": [ { "name": "Nuclear pore glycoprotein p62", "type": "recommended", "evidence": [ { "id": "A0A4X1W6N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4/entry#names_and_taxonomy" } ] }, { "name": "62 kDa nucleoporin", "type": "synonym", "evidence": [ { "id": "A0A4X1W6N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4/entry#names_and_taxonomy" } ] }, { "name": "Nucleoporin Nup62", "type": "synonym", "evidence": [ { "id": "A0A4X1W6N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Essential component of the nuclear pore complex. The N-terminal is probably involved in nucleocytoplasmic transport. The C-terminal is involved in protein-protein interaction probably via coiled-coil formation, promotes its association with centrosomes and may function in anchorage of p62 to the pore complex. Plays a role in mitotic cell cycle progression by regulating centrosome segregation, centriole maturation and spindle orientation. It might be involved in protein recruitment to the centrosome after nuclear breakdown.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4#function" }, { "database": "UniProtKB", "id": "ARBA00056849", "url": "https://www.uniprot.org/uniprotkb/ARBA00056849#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUP62CL", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4", "locus": { "chromosome": "X", "start_pos": 87601042, "end_pos": 87630253, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012557", "url": "https://www.ensembl.org/id/ENSSSCG00000012557" } ] } } ], "crossref": [ { "id": "A0A4X1W6N4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W6N4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR007758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12084", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12084", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12084:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12084:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05064", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05064", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W6N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFTSFSNASSSTAATGISSTTSTTTTTTVTTTTTTTITSGFTLNIKPLTSTGIDNTVPFTSTVNAIITPVMTYGQLDGLVNKWSLELEDQEKHFLHQATQVNVWDNTLIENGEKITALHGEVEKVKLDQKRLEKELDFILSQQKELEDLLIPLEESVKDQNGSVYLQHTDERESTSSRSAKF", "length": 183, "header": "tr|A0A4X1W6N4-1|A0A4X1W6N4_PIG Isoform 1 of Nuclear pore glycoprotein p62 OS=Sus scrofa OX=9823 GN=NUP62CL PE=3 SV=1 CANONICAL=A0A4X1W6N4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W6N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4/entry", "sequence": { "sequence": "MLFTSFSNASSSTAATGISSTTSTTTTTTVTTTTTTTITSGFTLNIKPLTSTGIDNTVPFTSTVNAIITPVMTYGQLDGLVNKWSLELEDQEKHFLHQATQVNVWDNTLIENGEKITALHGEVEKVKLDQKRLEKELDFILSQQKELEDLLIPLEESVKDQNGSVYLQHTDERESTSSRSAKF", "length": 183, "header": "tr|A0A4X1W6N4-1|A0A4X1W6N4_PIG Isoform 1 of Nuclear pore glycoprotein p62 OS=Sus scrofa OX=9823 GN=NUP62CL PE=3 SV=1 CANONICAL=A0A4X1W6N4-1" }, "locus": { "chromosome": "X", "start_pos": 87630253, "end_pos": 87601045, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023366.3", "url": "https://www.ensembl.org/id/ENSSSCT00000023366.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020029.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020029.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" }, { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" }, { "name": "mRNA transport", "id": "GO:0051028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051028", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of nuclear pore", "id": "GO:0017056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017056", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W6N4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W6N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W6N4" }, { "id": "PF05064", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleoporin NSP1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 172, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W730-1", "uniprot_ac": "A0A4X1W730", "uniprot_id": "A0A4X1W730_PIG", "mass": { "chemical_mass": 10232.0, "monoisotopic_mass": 10232.0 }, "refseq": { "ac": "NP_001341429", "name": "serine-rich and transmembrane domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429" }, "gene_names": [ { "name": "SERTM2", "type": "recommended", "evidence": [ { "id": "A0A4X1W730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730" } ] }, { "name": "LINC00890", "type": "synonym", "evidence": [ { "id": "NP_001341429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429" } ] }, { "name": "SERTM2", "type": "synonym", "evidence": [ { "id": "NP_001341429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429" } ] } ], "protein_names": [ { "name": "Serine rich and transmembrane domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A4X1W730", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730/entry#names_and_taxonomy" } ] }, { "name": "long intergenic non-protein coding RNA 890", "type": "synonym", "evidence": [ { "id": "NP_001341429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429" } ] }, { "name": "serine-rich and transmembrane domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "NP_001341429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W730", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SERTM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730", "locus": { "chromosome": "X", "start_pos": 91548871, "end_pos": 91537899, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047465", "url": "https://www.ensembl.org/id/ENSSSCG00000047465" } ] } } ], "crossref": [ { "id": "A0A4X1W730", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W730", "database": "AlphaFoldDB", "categories": [] }, { "id": "106507011", "url": "https://www.ncbi.nlm.nih.gov/gene/106507011", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031741", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031741", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR35660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35660:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35660:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15872", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15872", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001341429", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341429", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W730", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W730-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEVHFKYHGNLTGRAHFPTLATEVDTTSDKYSNLYMYVGLFLSLLAILLILLFTMLLRLKHVISPITSESTESVPQFTDVEMQSRIPTP", "length": 90, "header": "tr|A0A4X1W730-1|A0A4X1W730_PIG Isoform 1 of Serine rich and transmembrane domain containing 2 OS=Sus scrofa OX=9823 GN=SERTM2 PE=4 SV=1 CANONICAL=A0A4X1W730-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W730-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730/entry", "sequence": { "sequence": "MTEVHFKYHGNLTGRAHFPTLATEVDTTSDKYSNLYMYVGLFLSLLAILLILLFTMLLRLKHVISPITSESTESVPQFTDVEMQSRIPTP", "length": 90, "header": "tr|A0A4X1W730-1|A0A4X1W730_PIG Isoform 1 of Serine rich and transmembrane domain containing 2 OS=Sus scrofa OX=9823 GN=SERTM2 PE=4 SV=1 CANONICAL=A0A4X1W730-1" }, "locus": { "chromosome": "X", "start_pos": 91545150, "end_pos": 91544881, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090179.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090179.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063585.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063585.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W730", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W730" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W8A0-1", "uniprot_ac": "A0A4X1W8A0", "uniprot_id": "A0A4X1W8A0_PIG", "mass": { "chemical_mass": 17306.0, "monoisotopic_mass": 17306.0 }, "refseq": { "ac": "NP_001177146", "name": "plasminogen receptor (KT)", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146" }, "gene_names": [ { "name": "PLGRKT", "type": "recommended", "evidence": [ { "id": "A0A4X1W8A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0" } ] }, { "name": "C1H9orf46", "type": "synonym", "evidence": [ { "id": "NP_001177146", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146" } ] }, { "name": "C9orf46", "type": "synonym", "evidence": [ { "id": "NP_001177146", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146" } ] }, { "name": "PLGRKT", "type": "synonym", "evidence": [ { "id": "NP_001177146", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146" } ] } ], "protein_names": [ { "name": "Plasminogen receptor with a C-terminal lysine", "type": "synonym", "evidence": [ { "id": "A0A4X1W8A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0/entry#names_and_taxonomy" } ] }, { "name": "plasminogen receptor (KT)", "type": "synonym", "evidence": [ { "id": "NP_001177146", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLGRKT", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0", "locus": { "chromosome": "1", "start_pos": 216739722, "end_pos": 216692047, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005212", "url": "https://www.ensembl.org/id/ENSSSCG00000005212" } ] } } ], "crossref": [ { "id": "A0A4X1W8A0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W8A0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100155714", "url": "https://www.ncbi.nlm.nih.gov/gene/100155714", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019319", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019319", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155714", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155714", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGYYTDW", "url": "https://omabrowser.org/oma/group/MGYYTDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W778", "url": "https://www.orthodb.org/?gene=A0A4X1W778", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W8A0", "url": "https://www.orthodb.org/?gene=A0A4X1W8A0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13411:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13411:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10166", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10166", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001177146", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177146", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W778", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W778", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W778-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W778-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTFFGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSKLQLPKGMITFEGLEKARREQSKFFIDK", "length": 147, "header": "tr|A0A4X1W8A0-1|A0A4X1W8A0_PIG Isoform 1 of Plasminogen receptor with a C-terminal lysine OS=Sus scrofa OX=9823 GN=PLGRKT PE=1 SV=1 CANONICAL=A0A4X1W8A0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W778-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W778/entry", "sequence": { "sequence": "MGFIFSKSMNENMKRQQEFMLMNTRLQAPGSFTLAPYSSLIFCLGILVFLICILAGSSHGLCPSGKLERQLIMQNEMRERQMAMQIAWSREFLKYFGTFFGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSKLQLPKGMITFEGLEKARREQSKFFIDK", "length": 186, "header": "tr|A0A4X1W778-1|A0A4X1W8A0_PIG Computationally mapped isoform of Plasminogen receptor with a C-terminal lysine OS=Sus scrofa OX=9823 GN=PLGRKT PE=1 SV=1 CANONICAL=A0A4X1W8A0-1" }, "locus": { "chromosome": "1", "start_pos": 216739446, "end_pos": 216694969, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064083.1", "url": "https://www.ensembl.org/id/ENSSSCT00000064083.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031194.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031194.1" } ] } }, { "isoform_ac": "A0A4X1W8A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0/entry", "sequence": { "sequence": "MGFIFSKSMNENMKRQQEFMLMNTRLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTFFGIASVALTAGAIKRKKPAFFLPIIPLGFVFTYQYDLGYGTLLQRMKGEAENILETETSKLQLPKGMITFEGLEKARREQSKFFIDK", "length": 147, "header": "tr|A0A4X1W8A0-1|A0A4X1W8A0_PIG Isoform 1 of Plasminogen receptor with a C-terminal lysine OS=Sus scrofa OX=9823 GN=PLGRKT PE=1 SV=1 CANONICAL=A0A4X1W8A0-1" }, "locus": { "chromosome": "1", "start_pos": 216739446, "end_pos": 216694969, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005745.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005745.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005603.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005603.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W778", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W778" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155714", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155714", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ACN8-1", "protein_name": "Plasminogen receptor (KT)", "gene_name": "Plgrkt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFIFSKSMNENMKNQQEFMVMHARLQLERQLIMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLAAGAIKRKKPAFLIPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGLITFESLEKARREQSKFFSDK", "length": 147 }, "evidence": [ { "id": "A0A4X1W8A0", "url": "https://omabrowser.org/oma/group/A0A4X1W8A0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I7L1-1", "protein_name": "Plasminogen receptor (KT)", "gene_name": "Plgrkt", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFIFSKSMNENMKNQQEFMVTHARLQLERQLTMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLAAGAIKQKKPAFLFPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGMITFESLEKARREQSKFFTDK", "length": 147 }, "evidence": [ { "id": "A0A4X1W8A0", "url": "https://omabrowser.org/oma/group/A0A4X1W8A0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9D3P8-1", "protein_name": "Plasminogen receptor (KT)", "gene_name": "Plgrkt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGFIFSKSMNENMKNQQEFMVTHARLQLERHLTMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLATGALKRKKPAFLVPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGLITFESLEKARREQSKLFSDK", "length": 147 }, "evidence": [ { "id": "A0A4X1W8A0", "url": "https://omabrowser.org/oma/group/A0A4X1W8A0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBL7-1", "protein_name": "Plasminogen receptor (KT)", "gene_name": "PLGRKT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFIFSKSMNESMKNQKEFMLMNARLQLERQLIMQSEMRERQMAMQIAWSREFLKYFGTFFGLAAISLTAGAIKKKKPAFLVPIVPLSFILTYQYDLGYGTLLERMKGEAEDILETEKSKLQLPRGMITFESIEKARKEQSRFFIDK", "length": 147 }, "evidence": [ { "id": "A0A4X1W8A0", "url": "https://omabrowser.org/oma/group/A0A4X1W8A0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VY41-1", "protein_name": "Plasminogen receptor (KT)", "gene_name": "Dmel\\CG13404", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGATASCKKTSGSGYPEHDDPSYRKCQELKMERWIQMHYQIKQREQALAIAHHRELFYWLSGFYLSAVYGCASYYQRVRRVSALAPLLPLTFVVGYYTDWAYGSKMHRIQAEANMIMEHEQELLHWPGGLPTVAGIDEARVETEMEKKMHPHHM", "length": 154 }, "evidence": [ { "id": "A0A4X1W8A0", "url": "https://omabrowser.org/oma/group/A0A4X1W8A0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of plasminogen activation", "id": "GO:0010756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8A0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W7A0-1", "uniprot_ac": "A0A4X1W7A0", "uniprot_id": "A0A4X1W7A0_PIG", "mass": { "chemical_mass": 36066.0, "monoisotopic_mass": 36066.0 }, "refseq": { "ac": "XP_020943020", "name": "retinol dehydrogenase 12-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943020" }, "gene_names": [ { "name": "LOC100513982", "type": "recommended", "evidence": [ { "id": "A0A4X1W7A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0" } ] }, { "name": "LOC100513982", "type": "synonym", "evidence": [ { "id": "XP_020943020", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943020" } ] } ], "protein_names": [ { "name": "Retinol dehydrogenase 12", "type": "recommended", "evidence": [ { "id": "A0A4X1W7A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0/entry#names_and_taxonomy" } ] }, { "name": "retinol dehydrogenase 12-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943020", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943020" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513982", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0", "locus": {} } ], "crossref": [ { "id": "A0A4X1W7A0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W7A0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05327", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05327", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513982", "url": "https://www.ncbi.nlm.nih.gov/gene/100513982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CNIAIPS", "url": "https://omabrowser.org/oma/group/CNIAIPS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W7A0", "url": "https://www.orthodb.org/?gene=A0A4X1W7A0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43157:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43157:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943020", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943020", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W7A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLWSLLSSPVWGLGFVLLILVPLLRLGVQIWYKIHLWDLQGCSTDLTGKTAVVTGANSGIGKAVSQELARRGARVILACRSRERGQGALTEIQAATRSNRLLLGGVDLSSMASIRSFVQWLLRESPEIHLLVNNAGVSGFPRTRTPEGLDLTFATNYIGPFLLTNLLQGALQRAGSARVVNVSSFRQAHGYIDEEHLIGAGGPLTFNQNYDCSKLLLASFTGRLAQRLQGTGVTVNSVSPGVVYTGIMKNSPWLYRFLFWLLSIFFKNSKQGAIPVLYLCLAKELDGISGKYFSSSCVITLPPKAARDPHVAQSLWNTTVRLTNLDKMD", "length": 330, "header": "tr|A0A4X1W7A0-1|A0A4X1W7A0_PIG Isoform 1 of Retinol dehydrogenase 12 OS=Sus scrofa OX=9823 GN=LOC100513982 PE=3 SV=1 CANONICAL=A0A4X1W7A0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0/entry", "sequence": { "sequence": "MSLWSLLSSPVWGLGFVLLILVPLLRLGVQIWYKIHLWDLQGCSTDLTGKTAVVTGANSGIGKAVSQELARRGARVILACRSRERGQGALTEIQAATRSNRLLLGGVDLSSMASIRSFVQWLLRESPEIHLLVNNAGVSGFPRTRTPEGLDLTFATNYIGPFLLTNLLQGALQRAGSARVVNVSSFRQAHGYIDEEHLIGAGGPLTFNQNYDCSKLLLASFTGRLAQRLQGTGVTVNSVSPGVVYTGIMKNSPWLYRFLFWLLSIFFKNSKQGAIPVLYLCLAKELDGISGKYFSSSCVITLPPKAARDPHVAQSLWNTTVRLTNLDKMD", "length": 330, "header": "tr|A0A4X1W7A0-1|A0A4X1W7A0_PIG Isoform 1 of Retinol dehydrogenase 12 OS=Sus scrofa OX=9823 GN=LOC100513982 PE=3 SV=1 CANONICAL=A0A4X1W7A0-1" }, "locus": { "chromosome": "3", "start_pos": 68629652, "end_pos": 68624176, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009073.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009073.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008845.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008845.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7A0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 182, "end_pos": 184 }, { "start_pos": 318, "end_pos": 320 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W7B1-1", "uniprot_ac": "A0A4X1W7B1", "uniprot_id": "A0A4X1W7B1_PIG", "mass": { "chemical_mass": 18582.0, "monoisotopic_mass": 18582.0 }, "refseq": {}, "gene_names": [ { "name": "C2orf68", "type": "recommended", "evidence": [ { "id": "A0A4X1W7B1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1" } ] } ], "protein_names": [ { "name": "Chromosome 3 C2orf68 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1W7B1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7B1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2orf68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1", "locus": { "chromosome": "3", "start_pos": 59163170, "end_pos": 59156669, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028287", "url": "https://www.ensembl.org/id/ENSSSCG00000028287" } ] } } ], "crossref": [ { "id": "A0A4X1W7B1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W7B1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR018888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620143", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620143", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCLEYEG", "url": "https://omabrowser.org/oma/group/FCLEYEG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W7B1", "url": "https://www.orthodb.org/?gene=A0A4X1W7B1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34256", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34256", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34256:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34256:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W7B1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESAPGPGPGLCYKPGGRLDMSHGFVHHIRRNQLARDDYDKKVKQAAKEKVRRRHTPAPTRPRKPDLQVYLPRHRDASTHPSNPDCEESSESSSSGGSEPEPPGHQLFCLEYEADSGDITSVIVYQDDDPGRVSDKVSAHTPLEPPMREALKLRIQEEIAKRQSRP", "length": 166, "header": "tr|A0A4X1W7B1-1|A0A4X1W7B1_PIG Isoform 1 of Chromosome 3 C2orf68 homolog OS=Sus scrofa OX=9823 GN=C2orf68 PE=3 SV=1 CANONICAL=A0A4X1W7B1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7B1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1/entry", "sequence": { "sequence": "MESAPGPGPGLCYKPGGRLDMSHGFVHHIRRNQLARDDYDKKVKQAAKEKVRRRHTPAPTRPRKPDLQVYLPRHRDASTHPSNPDCEESSESSSSGGSEPEPPGHQLFCLEYEADSGDITSVIVYQDDDPGRVSDKVSAHTPLEPPMREALKLRIQEEIAKRQSRP", "length": 166, "header": "tr|A0A4X1W7B1-1|A0A4X1W7B1_PIG Isoform 1 of Chromosome 3 C2orf68 homolog OS=Sus scrofa OX=9823 GN=C2orf68 PE=3 SV=1 CANONICAL=A0A4X1W7B1-1" }, "locus": { "chromosome": "3", "start_pos": 59158871, "end_pos": 59156781, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028572.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028572.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021410.1", "url": "https://www.ensembl.org/id/ENSSSCP00000021410.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7B1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7B1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620143", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620143", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KQ58-1", "protein_name": "UPF0561 protein C2orf68 homolog", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEVIRDGEGESVKYKPGGRLDMSHGFLRHIRRNQIARDDYDREVKQAKEKQRRRHTNTPRRPRRPDRQVYNPRIRNGSEPGVNAEAEDWNESSSGTEMENTGTELFWLDYQADNGKITSFIVHKEDKPEVIVQRVAEKNVLDSSMRAALLARVGQEMNKRCDKR", "length": 164 }, "evidence": [ { "id": "A0A4X1W7B1", "url": "https://omabrowser.org/oma/group/A0A4X1W7B1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HPY6-1", "protein_name": "UPF0561 protein C2orf68 homolog", "gene_name": "CUNH2orf68", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEAARDPGPGLCCKPGGRLDMSHGFVHHIRRNQIARDDYDKKVKQAAKEKARRRHTPAPTRPRKPDLQVYLPRHRDGSAHLVNPDCEESGESSSSGSSELEPPGRQLFCLEYEADSGEVTSVIVYQDDDPKRVSEEISAHTPLDPAMQEALRVRIQEELAKRQSRH", "length": 166 }, "evidence": [ { "id": "A0A4X1W7B1", "url": "https://omabrowser.org/oma/group/A0A4X1W7B1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q149G0-1", "protein_name": "UPF0561 protein C2orf68 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAAQDHGPGLCCKPGGRLDMSHGFVHHIRRNQLDRDDYDKKVKQAAKEKARRRHTPAPTRPRKPDLQVYLPRHRDGSTHPVNPDCEEASESSSSGSSELEPPGRQLFCLDYEADSGEVTSVIVYQDDDPGRVSEAVSAHTPLDPAMREALRSRIQEELAKRQSRH", "length": 166 }, "evidence": [ { "id": "A0A4X1W7B1", "url": "https://omabrowser.org/oma/group/A0A4X1W7B1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q2NKX9-1", "protein_name": "UPF0561 protein C2orf68", "gene_name": "C2orf68", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAGPHPRPGHCCKPGGRLDMNHGFVHHIRRNQIARDDYDKKVKQAAKEKVRRRHTPAPTRPRKPDLQVYLPRHRDVSAHPRNPDYEESGESSSSGGSELEPSGHQLFCLEYEADSGEVTSVIVYQGDDPGKVSEKVSAHTPLDPPMREALKLRIQEEIAKRQSQH", "length": 166 }, "evidence": [ { "id": "A0A4X1W7B1", "url": "https://omabrowser.org/oma/group/A0A4X1W7B1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W7X4-1", "uniprot_ac": "A0A4X1W7X4", "uniprot_id": "A0A4X1W7X4_PIG", "mass": { "chemical_mass": 26306.0, "monoisotopic_mass": 26306.0 }, "refseq": { "ac": "XP_003125054", "name": "N-acetyltransferase 8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125054" }, "gene_names": [ { "name": "NAT8", "type": "recommended", "evidence": [ { "id": "A0A4X1W7X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4" } ] }, { "name": "NAT8", "type": "synonym", "evidence": [ { "id": "XP_003125054", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125054" } ] } ], "protein_names": [ { "name": "N-acetyltransferase 8 (putative)", "type": "synonym", "evidence": [ { "id": "A0A4X1W7X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4/entry#names_and_taxonomy" } ] }, { "name": "N-acetyltransferase 8", "type": "synonym", "evidence": [ { "id": "XP_003125054", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125054" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAT8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4", "locus": {} } ], "crossref": [ { "id": "A0A4X1W7X4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W7X4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516363", "url": "https://www.ncbi.nlm.nih.gov/gene/100516363", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516363", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516363", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YVPTLCV", "url": "https://omabrowser.org/oma/group/YVPTLCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W7X4", "url": "https://www.orthodb.org/?gene=A0A4X1W7X4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13947:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13947:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125054", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125054", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W7X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPYCIRKYQEKDRKWVLGSFSHLVTEHIPATFCCVLKLPRTLVLLLGGPLALFLISGSWVLALMASASLLGALWFLAKYPWAQFEARCLRTDLSDITKSYFSESGSCFWVAESEGQLVGMVGALPSKKPTLQKVQLELLHLFVALEHRGQGIAKALVRTVLQFAHDQGYSEVVLTTSIVQCSALVIYQHFGFQKTGFSSEGFRLCALPVLHLTYRLPSAQVSQTLEQGESPRPISL", "length": 237, "header": "tr|A0A4X1W7X4-1|A0A4X1W7X4_PIG Isoform 1 of N-acetyltransferase 8 (putative) OS=Sus scrofa OX=9823 GN=NAT8 PE=1 SV=1 CANONICAL=A0A4X1W7X4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4/entry", "sequence": { "sequence": "MAPYCIRKYQEKDRKWVLGSFSHLVTEHIPATFCCVLKLPRTLVLLLGGPLALFLISGSWVLALMASASLLGALWFLAKYPWAQFEARCLRTDLSDITKSYFSESGSCFWVAESEGQLVGMVGALPSKKPTLQKVQLELLHLFVALEHRGQGIAKALVRTVLQFAHDQGYSEVVLTTSIVQCSALVIYQHFGFQKTGFSSEGFRLCALPVLHLTYRLPSAQVSQTLEQGESPRPISL", "length": 237, "header": "tr|A0A4X1W7X4-1|A0A4X1W7X4_PIG Isoform 1 of N-acetyltransferase 8 (putative) OS=Sus scrofa OX=9823 GN=NAT8 PE=1 SV=1 CANONICAL=A0A4X1W7X4-1" }, "locus": { "chromosome": "3", "start_pos": 69252053, "end_pos": 69251343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042101.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042101.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039914.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039914.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516363", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516363", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9JIY6-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "Nat8b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSYHICEYQDSDYKSVVDVFTKGAEEYIPSTFRHLLLLPRTLLLLLGVSLALVLVSGSWLLAVVCIFFLLPFLWFLAGQPWKNYVSKCLHTDMADITKSYLSDRGSGFWVAESGEQVVGTVGALPVKEPPSGRKQLQLFHLAVSSQHRGQGIAKALVRTVLQFARDQGYTDVVLETSTMQIGAVTLYLGMGFQKTGQYFPSMLWRLVGIRFVQLNYSFPSA", "length": 222 }, "evidence": [ { "id": "A0A4X1W7X4", "url": "https://omabrowser.org/oma/group/A0A4X1W7X4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPCHIRKYQESDRQWVVGLLSRGMAEHAPATFRQLLKLPRTLILLLGGPLALLLVSGSWLLALVFSISLFPALWFLAKKPWTEYVDMTLCTDMSDITKSYLSERGSCFWVAESEEKVVGMVGALPVDDPTLREKRLQLFHLFVDSEHRRQGIAKALVRTVLQFARDQGYSEVILDTGTIQLSAMALYQSMGFKKTGQSFFCVWARLVALHTVHFIYHLPSSKVGSL", "length": 227 }, "evidence": [ { "id": "A0A4X1W7X4", "url": "https://omabrowser.org/oma/group/A0A4X1W7X4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "N-acetyltransferase activity", "id": "GO:0008080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008080", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7X4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W7X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7X4" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 218, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W812-1", "uniprot_ac": "A0A4X1W812", "uniprot_id": "A0A4X1W812_PIG", "mass": { "chemical_mass": 3231.0, "monoisotopic_mass": 3231.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1W812", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W812", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812", "locus": {} } ], "crossref": [ { "id": "A0A4X1W812", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W812", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1W812", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W812-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTGLQREQRFSFGHRKWCLQHSRRA", "length": 26, "header": "tr|A0A4X1W812-1|A0A4X1W812_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W812-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W812-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812/entry", "sequence": { "sequence": "MNTGLQREQRFSFGHRKWCLQHSRRA", "length": 26, "header": "tr|A0A4X1W812-1|A0A4X1W812_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1W812-1" }, "locus": { "chromosome": "6", "start_pos": 169668565, "end_pos": 169630688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093524.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093524.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080932.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080932.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W812", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W812" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W8B8-1", "uniprot_ac": "A0A4X1W8B8", "uniprot_id": "A0A4X1W8B8_PIG", "mass": { "chemical_mass": 43860.0, "monoisotopic_mass": 43860.0 }, "refseq": { "ac": "XP_020948550", "name": "RNA-binding motif, single-stranded-interacting protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948550" }, "gene_names": [ { "name": "RBMS2", "type": "recommended", "evidence": [ { "id": "A0A4X1W8B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ] }, { "name": "RBMS2", "type": "synonym", "evidence": [ { "id": "XP_020948550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948550" } ] } ], "protein_names": [ { "name": "RNA binding motif single stranded interacting protein 2", "type": "synonym", "evidence": [ { "id": "A0A4X1W8B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif, single-stranded-interacting protein 2", "type": "synonym", "evidence": [ { "id": "XP_020948550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948550" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBMS2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8", "locus": { "chromosome": "5", "start_pos": 21932600, "end_pos": 21819862, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000402", "url": "https://www.ensembl.org/id/ENSSSCG00000000402" } ] } } ], "crossref": [ { "id": "A0A4X1W8B8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W8B8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000402", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000402", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12471", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12471", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12474", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12474", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522738", "url": "https://www.ncbi.nlm.nih.gov/gene/100522738", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522738", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522738", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNASWMH", "url": "https://omabrowser.org/oma/group/PNASWMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W8B8", "url": "https://www.orthodb.org/?gene=A0A4X1W8B8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AY57", "url": "https://www.uniprot.org/uniprotkb/A0A287AY57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AY57-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W813", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W813", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W813-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W813-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSNSTPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGLALTYDPTTALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPSSSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK", "length": 407, "header": "tr|A0A4X1W8B8-1|A0A4X1W8B8_PIG Isoform 1 of RNA binding motif single stranded interacting protein 2 OS=Sus scrofa OX=9823 GN=RBMS2 PE=4 SV=1 CANONICAL=A0A4X1W8B8-1" }, "isoforms": [ { "isoform_ac": "A0A287AY57-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AY57/entry", "sequence": { "sequence": "MEFSEREEKRSSLHLEKHELCSRGFLVTFDIRRPEPALNNPPRSAAWRPNERLFSSTQCWWLLQDIPLKLLEPYVSLSQQMAPPSPSNSTPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGLALTYDPTTALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPSSSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK", "length": 457, "header": "tr|A0A287AY57-1|A0A287AY57_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 2 OS=Sus scrofa OX=9823 GN=RBMS2 PE=4 SV=1 CANONICAL=A0A4X1W8B8-1" }, "locus": { "chromosome": "5", "start_pos": 21927827, "end_pos": 21819944, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046407.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046407.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048881.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048881.2" } ] } }, { "isoform_ac": "A0A4X1W813-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W813/entry", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSNSTPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGLALTYDPTTALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPSSSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK", "length": 381, "header": "tr|A0A4X1W813-1|A0A4X1W8B8_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 2 OS=Sus scrofa OX=9823 GN=RBMS2 PE=4 SV=1 CANONICAL=A0A4X1W8B8-1" }, "locus": { "chromosome": "5", "start_pos": 21927827, "end_pos": 21870850, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060088.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060088.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034858.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034858.2" } ] } }, { "isoform_ac": "A0A4X1W8B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8/entry", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSNSTPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGLALTYDPTTALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPSSSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK", "length": 407, "header": "tr|A0A4X1W8B8-1|A0A4X1W8B8_PIG Isoform 1 of RNA binding motif single stranded interacting protein 2 OS=Sus scrofa OX=9823 GN=RBMS2 PE=4 SV=1 CANONICAL=A0A4X1W8B8-1" }, "locus": { "chromosome": "5", "start_pos": 21927827, "end_pos": 21870850, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061336.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061336.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032871.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032871.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W813", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W813" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522738", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522738", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYJ7-1", "protein_name": "RNA binding motif, single stranded interacting protein 2", "gene_name": "Rbms2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKLYVAQQMAPPSPRNGTPNSSSGSGGNDQLSKTNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTTGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALQNGFYTAPYSLAHSRMLAQSALAPYLPSPVSSYQRVTQTSPVQVPNTSWMQQQSYLMQPSGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPAAAAMQGTYISQYPAVPSSSVSVEESNGQQSQLAVEPPSDHGVYPFQFSK", "length": 405 }, "evidence": [ { "id": "A0A4X1W8B8", "url": "https://omabrowser.org/oma/group/A0A4X1W8B8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7F5K2-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2 isoform X1", "gene_name": "Rbms2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPRNSTPNSSSGSNGHDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVTAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPTTALPNGFYPTPYNIAHSRVLAQAALSPYLPSPVSSYQRLTQPSLQVPSPSWMQHQSYLMQPSVSVQKWADKETTGCKEKPRALMTGYVGGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPTAAAIQGAYIPQYPPGPSSNVSVEESSGQQNQVAVETPSDHGVYPFQFSK", "length": 433 }, "evidence": [ { "id": "A0A4X1W8B8", "url": "https://omabrowser.org/oma/group/A0A4X1W8B8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q15434-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "RBMS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLSVTSRPGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSALSPYLSSPVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSTGTYMPTAAAMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQFNK", "length": 407 }, "evidence": [ { "id": "A0A4X1W8B8", "url": "https://omabrowser.org/oma/group/A0A4X1W8B8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3ZC34-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "RBMS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKPYVSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGDMGGMALTYDPSTALQNGFYPAPYNLAPNRMLTQSALSPYLPSPMTSYQRVTQTSPLQAPSPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMVGPLTQQLGHLSLSSTGTYVPTAAAMQGAYLSQYTPVPSSSVSVEESGSQQSQVPVDAPSEHGVYSFQFNK", "length": 407 }, "evidence": [ { "id": "A0A4X1W8B8", "url": "https://omabrowser.org/oma/group/A0A4X1W8B8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VC70-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "Rbms2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLSVTSRPGISTFGYNKNNKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQGRYVQNGRAWPRNGDMGGMALTYDPTAALQNGFYAAPYSIAHSRMLAQSALAPYLPSPVSSYQGSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGTFMPAAAAMHGAYISQYPAVPSSSVSAEESNGQQNQLAVEPPSDHGVYPFQFSK", "length": 383 }, "evidence": [ { "id": "A0A4X1W8B8", "url": "https://omabrowser.org/oma/group/A0A4X1W8B8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W8B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8B8" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 129, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W836-1", "uniprot_ac": "A0A4X1W836", "uniprot_id": "A0A4X1W836_PIG", "mass": { "chemical_mass": 38520.0, "monoisotopic_mass": 38520.0 }, "refseq": {}, "gene_names": [ { "name": "AGMAT", "type": "recommended", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ] } ], "protein_names": [ { "name": "Guanidino acid hydrolase, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "3.5.3.17", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "3.5.3.1", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "3.5.3.7", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "Arginase, mitochondrial", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "Guanidinobutyrase, mitochondrial", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] }, { "name": "Guanidinopropionase, mitochondrial", "type": "synonym", "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Hydrolyzes linear guanidino acids to form urea and the corresponding amines. Displays specificity for substrates having a negatively charged head group and short chains including taurocyamine, guanidino propanoic and butanoic acids. May protect cells by detoxifying potentially harmful amounts of guanidino acids. Metabolizes L-arginine with low efficiency.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FKE7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE7#function" }, { "database": "UniProtKB", "id": "ARBA00060320", "url": "https://www.uniprot.org/uniprotkb/ARBA00060320#function" }, { "database": "UniProtKB", "id": "A0A8W4FN59", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN59#function" }, { "database": "UniProtKB", "id": "F1SUU6", "url": "https://www.uniprot.org/uniprotkb/F1SUU6#function" }, { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AGMAT", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836", "locus": { "chromosome": "6", "start_pos": 74773324, "end_pos": 74784457, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003463", "url": "https://www.ensembl.org/id/ENSSSCG00000003463" } ] } } ], "crossref": [ { "id": "A0A4X1W836", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W836", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003463", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003463", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11592", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11592", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11358", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11358", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11358:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11358:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00491", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00491", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-351143", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351143", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "16029", "url": "https://www.rhea-db.org/rhea/16029", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "19501", "url": "https://www.rhea-db.org/rhea/19501", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "20569", "url": "https://www.rhea-db.org/rhea/20569", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "75931", "url": "https://www.rhea-db.org/rhea/75931", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W836-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKE7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN59", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUU6", "url": "https://www.uniprot.org/uniprotkb/F1SUU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUU6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQLLVSGCVRGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDPFGNTALLAANLLFEMLCVLPKVTVV", "length": 361, "header": "tr|A0A4X1W836-1|A0A4X1W836_PIG Isoform 1 of Guanidino acid hydrolase, mitochondrial OS=Sus scrofa OX=9823 GN=AGMAT PE=1 SV=1 CANONICAL=A0A4X1W836-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W836-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836/entry", "sequence": { "sequence": "MLQLLVSGCVRGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDPFGNTALLAANLLFEMLCVLPKVTVV", "length": 361, "header": "tr|A0A4X1W836-1|A0A4X1W836_PIG Isoform 1 of Guanidino acid hydrolase, mitochondrial OS=Sus scrofa OX=9823 GN=AGMAT PE=1 SV=1 CANONICAL=A0A4X1W836-1" }, "locus": { "chromosome": "6", "start_pos": 74784437, "end_pos": 74773483, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066817.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066817.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062464.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062464.2" } ] } }, { "isoform_ac": "A0A8W4FKE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKE7/entry", "sequence": { "sequence": "MLQLLVSGCARGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLGGDHTITYPILQAMSEKHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTPEIAGLTPSQLDLGQALEIIRGCQGLNVVGCDLVEVSPPYDPFGNTALLAANLLFEMLCVLPKVTVV", "length": 366, "header": "tr|A0A8W4FKE7-1|A0A8W4FKE7_PIG Computationally mapped isoform of Guanidino acid hydrolase, mitochondrial OS=Sus scrofa OX=9823 GN=AGMAT PE=1 SV=1 CANONICAL=A0A4X1W836-1" }, "locus": { "chromosome": "6", "start_pos": 74782706, "end_pos": 74773483, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095248.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095248.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079804.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079804.1" } ] } }, { "isoform_ac": "A0A8W4FN59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN59/entry", "sequence": { "sequence": "ELQPLLLVSGCARGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLVLGAWRVAVLGHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDPFGNTALLAANLLFEMLCVLPKVTVV", "length": 357, "header": "tr|A0A8W4FN59-1|A0A8W4FN59_PIG Computationally mapped isoform of Guanidino acid hydrolase, mitochondrial OS=Sus scrofa OX=9823 GN=AGMAT PE=1 SV=1 CANONICAL=A0A4X1W836-1" }, "locus": { "chromosome": "6", "start_pos": 74783336, "end_pos": 74773483, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106109.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106109.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080789.1" } ] } }, { "isoform_ac": "F1SUU6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU6/entry", "sequence": { "sequence": "MLQLLVSGCARGLRAGVGVRGLLPLHPASPATGLGNPGLSPSRQASNTPRNQPPKADFVARSVGICSMMRLPVQASPEGLDAAFIGVPLDIGTSNRPGARYGPRRIREESVLLRPANPSTGALPFQSLMVADLGDVNVNLYNLQDSCRLIREAYQKIVAAGCIPLTLVLGAWRVAVLGHGPVGLVHVDAHMDTADKALGEKLYHGSPFRRCVEEGLLDCKRVVQIGIRGSSLTLDTYSYSRSQGFRVVLAEDCWLKSLVPLMGEVRQQMGGKPIYISFDIDSLDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVVGCDLVEVSPPYDPFGNTALLAANLLFEMLCVLPKVTVV", "length": 355, "header": "tr|F1SUU6-1|F1SUU6_PIG Computationally mapped isoform of Guanidino acid hydrolase, mitochondrial OS=Sus scrofa OX=9823 GN=AGMAT PE=1 SV=2 CANONICAL=A0A4X1W836-1" }, "locus": { "chromosome": "6", "start_pos": 74782706, "end_pos": 74773483, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003849.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003849.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003761.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003761.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-351143", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351143", "resource": "Reactome", "description": "Agmatine biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" }, { "name": "arginase activity", "id": "GO:0004053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004053", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" }, { "name": "guanidinobutyrase activity", "id": "GO:0047971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047971", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" }, { "name": "guanidinopropionase activity", "id": "GO:0047972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047972", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" }, { "name": "agmatinase activity", "id": "GO:0008783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "arginine metabolic process", "id": "GO:0006525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" }, { "name": "putrescine biosynthetic process from arginine, via agmatine", "id": "GO:0033389", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033389", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W836", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16029", "name": "", "equation": "3-guanidinopropanoate + H2O = urea + beta-alanine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16029", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16029" } ] }, { "id": "19501", "name": "", "equation": "4-guanidinobutanoate + H2O = urea + 4-aminobutanoate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19501", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19501" } ] }, { "id": "20569", "name": "", "equation": "L-arginine + H2O = urea + L-ornithine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20569", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20569" } ] }, { "id": "75931", "name": "", "equation": "taurocyamine + H2O = urea + taurine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "75931", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/75931" } ] }, { "id": "R-SSC-350604", "name": "Agmatine + H2O <=> putrescine + urea", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-ALL-29514" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-350604", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350604" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-29514", "participant_name": "Urea [cytosol]", "crossref": [ { "id": "8144973", "database": "PubChem Substance", "url": "" }, { "id": "4539", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "HMDB0000294", "database": "HMDB Metabolite", "url": "" }, { "id": "C00086", "database": "COMPOUND", "url": "" }, { "id": "16199", "database": "ChEBI", "url": "" }, { "id": "ZINC000008214514", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 171, "amino_acid": "His", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 171, "end_pos": 171, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 194, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 194, "end_pos": 194, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 196, "amino_acid": "His", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 196, "end_pos": 196, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 198, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 198, "end_pos": 198, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 285, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 285, "end_pos": 285, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1W836", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W836" }, { "id": "PIRSR036979-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR036979-1" } ], "binding_site_uniprot": 287, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 287, "end_pos": 287, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W8F6-1", "uniprot_ac": "A0A4X1W8F6", "uniprot_id": "A0A4X1W8F6_PIG", "mass": { "chemical_mass": 42072.0, "monoisotopic_mass": 42072.0 }, "refseq": { "ac": "XP_003126338", "name": "G-protein coupled receptor 182", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126338" }, "gene_names": [ { "name": "GPR182", "type": "recommended", "evidence": [ { "id": "A0A4X1W8F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ] }, { "name": "GPR182", "type": "synonym", "evidence": [ { "id": "XP_003126338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126338" } ] } ], "protein_names": [ { "name": "G protein-coupled receptor 182", "type": "synonym", "evidence": [ { "id": "A0A4X1W8F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 182", "type": "synonym", "evidence": [ { "id": "XP_003126338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126338" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR182", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6", "locus": { "chromosome": "5", "start_pos": 22311028, "end_pos": 22304588, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037701", "url": "https://www.ensembl.org/id/ENSSSCG00000037701" } ] } } ], "crossref": [ { "id": "A0A4X1W8F6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W8F6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14988", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14988", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512467", "url": "https://www.ncbi.nlm.nih.gov/gene/100512467", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512467", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512467", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYFFNHT", "url": "https://omabrowser.org/oma/group/LYFFNHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W8F6", "url": "https://www.orthodb.org/?gene=A0A4X1W8F6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24226:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24226:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126338", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126338", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTTGPSVGPASDLGEIHNWTELLHFFNHTLPECHMELSEDTKRVALFVLYLAIFVVGLVENLLVICVNWHSSDRAGLLRPYVLNMAIADLGIVLSLPVWMLEVTLDYTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSIDRYVTLTNAFPTWQRHQHRGRRAVCMGVWVLAALIPLPEVVHIQLVDSFEPMCLFMAPFETYSTWALVAALSTTVLGFLLPFPLMVVFNVLTACRLRQAGQPEGRRHCRLVCAYITVFVICWLPYHVTLLLITLHGTHISLHCYLAHLLYFFYDIIDCFSMLHCVVNPILYNFLSPSFQGRLLNAVVHYLPKVQDREGRHASSSSSTQHSIVITKEGIQPPAAGPHHRV", "length": 369, "header": "tr|A0A4X1W8F6-1|A0A4X1W8F6_PIG Isoform 1 of G protein-coupled receptor 182 OS=Sus scrofa OX=9823 GN=GPR182 PE=3 SV=1 CANONICAL=A0A4X1W8F6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W8F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6/entry", "sequence": { "sequence": "MSTTGPSVGPASDLGEIHNWTELLHFFNHTLPECHMELSEDTKRVALFVLYLAIFVVGLVENLLVICVNWHSSDRAGLLRPYVLNMAIADLGIVLSLPVWMLEVTLDYTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSIDRYVTLTNAFPTWQRHQHRGRRAVCMGVWVLAALIPLPEVVHIQLVDSFEPMCLFMAPFETYSTWALVAALSTTVLGFLLPFPLMVVFNVLTACRLRQAGQPEGRRHCRLVCAYITVFVICWLPYHVTLLLITLHGTHISLHCYLAHLLYFFYDIIDCFSMLHCVVNPILYNFLSPSFQGRLLNAVVHYLPKVQDREGRHASSSSSTQHSIVITKEGIQPPAAGPHHRV", "length": 369, "header": "tr|A0A4X1W8F6-1|A0A4X1W8F6_PIG Isoform 1 of G protein-coupled receptor 182 OS=Sus scrofa OX=9823 GN=GPR182 PE=3 SV=1 CANONICAL=A0A4X1W8F6-1" }, "locus": { "chromosome": "5", "start_pos": 22306263, "end_pos": 22305157, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050217.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050217.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046591.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512467", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512467", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9Q5-1", "protein_name": "G protein-coupled receptor 182", "gene_name": "GPR182", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEATAAPSETPTAPSEFGEYHNLSELFHLLNYTYTSCEFSLDENAKRVAVFVLYLAIFVVGLVENLLVVWVNWQTRSSRSLVNLYVLHMAIADLGVLLSLPVWMLEVMLDYTWLWGSFLCRFTHYFYLANMYASIFFLTCLSVDRYVSLRGSSPFWHRHQHLARRIICTSVWVLAAAIPFVEVSHMQLVNTGDPICIFMAPFETYDEWALAVSLATTAVGFLIPFSIIVVFNVLTARLVRRSKPEEGRRHCLLIYAYIAAFLLSWLPFHILLTLLTLDGTHIVLHCSFAHFLYFFYDIIDCLTLLHCVLNPILYNFLSKSFRSKLISAVVKYVPKDAAGQKGAEGSSSSTQHSIVIAKDGSAPS", "length": 365 }, "evidence": [ { "id": "A0A4X1W8F6", "url": "https://omabrowser.org/oma/group/A0A4X1W8F6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6QL83-1", "protein_name": "G protein-coupled receptor 182", "gene_name": "GPR182", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSATAGPSMAPTRDVGEIYNWTELLHFFNHTLPECHMELNENTKRVALFVLYLAIFVVGLVENLLVICVNWRGSARAGLLRLYVLNMAIADLGIILSLPVWMLEATLDYTWLWGSFSCRFTHYFYYANMYSSIFFLVCLSVDRYVTLTNASTSWQRHQHRGRRAVCAGVWVLSALIPLPEVVHIRLVDSFEPMCLFMAPFETYSTWATVVALSTTVLGFLLPLPLIAVFNVLTARRLRQTGQPEGRRHCLLVCAYIAVFVICWLPYHLTLLLLTLHGTHISLHCYLAHLLYFFYDIIDCFSMLHCVVNPILYNFLSPSFRGRLLNAVVHYLPKVQVREGRHASTSSSSSTQHSIIITKEGIQPPAAGPHQHPSLNFQAANTLPTSAPQSLVAS", "length": 393 }, "evidence": [ { "id": "A0A4X1W8F6", "url": "https://omabrowser.org/oma/group/A0A4X1W8F6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HW25-1", "protein_name": "G-protein coupled receptor 182", "gene_name": "Gpr182", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVKSSPGPSPTSAPGNDFGEIHNWTELLHFFNHTFSDCHTEFNENAKQVVLFVVYLAIFVVGLVENVLVICVNWRRSGRAGLLNLYVLNIAIADLGIVLSLPVWMLEVMLDYTWLWGSFSCRFTHYFYLANMYSSIFFLTCLSIDRYVSLANPSPSWQRHQHRVRRAVCAGVWVLSAIIPLPEVVHIQLMDGSEPMCLFLAPFETYSTWALAVALSATILGFLLPFPLIAVFNILTACRLRKQGQPESRRHCLLLWAYIAVFVICWLPYHVTMLLLTLHATHIFLHCHLVNLLYFFYEIIDCFSMLHCVANPILYNFLSPSFRGRLLSIVVRYLPKEQARAAGRRASSSSSTQHSIIITKEGSLPAAELHPHPTRNSGASSPPRNASSTFCNSIAS", "length": 397 }, "evidence": [ { "id": "A0A4X1W8F6", "url": "https://omabrowser.org/oma/group/A0A4X1W8F6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O15218-1", "protein_name": "Atypical chemokine receptor 5", "gene_name": "ACKR5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVKPSWGPGPSEGVTAVPTSDLGEIHNWTELLDLFNHTLSECHVELSQSTKRVVLFALYLAMFVVGLVENLLVICVNWRGSGRAGLMNLYILNMAIADLGIVLSLPVWMLEVTLDYTWLWGSFSCRFTHYFYFVNMYSSIFFLVCLSVDRYVTLTSASPSWQRYQHRVRRAMCAGIWVLSAIIPLPEVVHIQLVEGPEPMCLFMAPFETYSTWALAVALSTTILGFLLPFPLITVFNVLTACRLRQPGQPKSRRHCLLLCAYVAVFVMCWLPYHVTLLLLTLHGTHISLHCHLVHLLYFFYDVIDCFSMLHCVINPILYNFLSPHFRGRLLNAVVHYLPKDQTKAGTCASSSSCSTQHSIIITKGDSQPAAAAPHPEPSLSFQAHHLLPNTSPISPTQPLTPS", "length": 404 }, "evidence": [ { "id": "A0A4X1W8F6", "url": "https://omabrowser.org/oma/group/A0A4X1W8F6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "pmid": "" }, { "name": "C-C chemokine binding", "id": "GO:0019957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019957", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "pmid": "" }, { "name": "C-X-C chemokine binding", "id": "GO:0019958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019958", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8F6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W8F6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8F6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 311, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 }, { "start_pos": 28, "end_pos": 30 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W8S9-1", "uniprot_ac": "A0A4X1W8S9", "uniprot_id": "A0A4X1W8S9_PIG", "mass": { "chemical_mass": 41729.0, "monoisotopic_mass": 41729.0 }, "refseq": { "ac": "XP_003127560", "name": "actin-related protein T2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127560" }, "gene_names": [ { "name": "ACTRT2", "type": "recommended", "evidence": [ { "id": "A0A4X1W8S9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9" } ] }, { "name": "ACTRT2", "type": "synonym", "evidence": [ { "id": "XP_003127560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127560" } ] } ], "protein_names": [ { "name": "Actin related protein T2", "type": "synonym", "evidence": [ { "id": "A0A4X1W8S9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9/entry#names_and_taxonomy" } ] }, { "name": "actin-related protein T2", "type": "synonym", "evidence": [ { "id": "XP_003127560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127560" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8S9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTRT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9", "locus": { "chromosome": "6", "start_pos": 64665774, "end_pos": 64664641, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003357", "url": "https://www.ensembl.org/id/ENSSSCG00000003357" } ] } } ], "crossref": [ { "id": "A0A4X1W8S9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W8S9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13397", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13397", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512108", "url": "https://www.ncbi.nlm.nih.gov/gene/100512108", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512108", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512108", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DQLYQAP", "url": "https://omabrowser.org/oma/group/DQLYQAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W8S9", "url": "https://www.orthodb.org/?gene=A0A4X1W8S9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127560", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127560", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W8S9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFNPHVLDSPAVIFDNGSGLCKAGLSGEIGPRHVVSSVVGHPKFKMPSTGANQKKYFVGEEALHRYEVLHLHYPIERGLITGWDDMEKLWKHLFEWELGVKASDRPVLMTEPSLNPRETREKMAEVMFEGFAVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASGRAFPCVLDKALVDDLKEKLCYVALEPDKELSRRSEDVLREYKLPDGNIVPIGDQLYQAPEALFSPDQLGIQNPGLSKMASCSITKCDADIQKTLFGEIVLSGGTTLFQGLDDRLLKELEQLAPKGTPIKITAPPDRWFSTWIGASIVTSLSSFRQMWVTSADFKEFGTSVVQRRCF", "length": 377, "header": "tr|A0A4X1W8S9-1|A0A4X1W8S9_PIG Isoform 1 of Actin related protein T2 OS=Sus scrofa OX=9823 GN=ACTRT2 PE=1 SV=1 CANONICAL=A0A4X1W8S9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9/entry", "sequence": { "sequence": "MFNPHVLDSPAVIFDNGSGLCKAGLSGEIGPRHVVSSVVGHPKFKMPSTGANQKKYFVGEEALHRYEVLHLHYPIERGLITGWDDMEKLWKHLFEWELGVKASDRPVLMTEPSLNPRETREKMAEVMFEGFAVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASGRAFPCVLDKALVDDLKEKLCYVALEPDKELSRRSEDVLREYKLPDGNIVPIGDQLYQAPEALFSPDQLGIQNPGLSKMASCSITKCDADIQKTLFGEIVLSGGTTLFQGLDDRLLKELEQLAPKGTPIKITAPPDRWFSTWIGASIVTSLSSFRQMWVTSADFKEFGTSVVQRRCF", "length": 377, "header": "tr|A0A4X1W8S9-1|A0A4X1W8S9_PIG Isoform 1 of Actin related protein T2 OS=Sus scrofa OX=9823 GN=ACTRT2 PE=1 SV=1 CANONICAL=A0A4X1W8S9-1" }, "locus": { "chromosome": "6", "start_pos": 64665771, "end_pos": 64664641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003726.2", "url": "https://www.ensembl.org/id/ENSSSCT00000003726.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000003640.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8S9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512108", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512108", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LNL8-1", "protein_name": "Actin-related protein T2", "gene_name": "LOC100760823", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFNPQVLDSPAVIFDNGSGLCKAGLSGEIGPRHVTSSIVGYPKFKMPSTGANQKKYFVGEEALYKQEALRLHSPIERGLVTSWDDVEKLWRHLFEWELGVKPSERPVLMTEPSLNPRENREKTAEMMFETFDVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVSKLYVAGRDITELLTRLLLASGRAFPCPLDKALVDDIKEKLCYVALEPEEELSRRAEDVLREYKLPDGNVIYIGDQLYQAPEVLFSPDQLGTHGPGLAQMASNSIAKCDADIQKTLFGEIVLSGGTTLFQGLDDRLLRELEQLASKGVPIKITAPPDRWFSTWIGASIVTSLISFKQMWITAADFKEFGASVVQRRCF", "length": 377 }, "evidence": [ { "id": "A0A4X1W8S9", "url": "https://omabrowser.org/oma/group/A0A4X1W8S9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2TA43-1", "protein_name": "Actin-related protein T2", "gene_name": "ACTRT2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFDPHILDSPAVIFDNGSGLCKAGLSGEIGPRHVVSSVVGHPKFKTPLTGANQKKYFVGEEALHRHEVLQLHYPIERGLITGWEDMEKLWKHLFEWELGVKANDQPVLMTEPSLNPRETREKMAEVMFESFNVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASGRTFSCVLDKALVDDIKEKLCYVALEPDKELCRRPEEVLREYKLPDGNIVPIGDQLYQAPEALFSPEKLGIQNPGLSKMVSCSITKCDADIQKTLYGEIVLSGGTTLFQGLDDRLLRELEQLASKGTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTSADFKEFGTSVIQRRCF", "length": 377 }, "evidence": [ { "id": "A0A4X1W8S9", "url": "https://omabrowser.org/oma/group/A0A4X1W8S9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TDY3-1", "protein_name": "Actin-related protein T2", "gene_name": "ACTRT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFNPHALDSPAVIFDNGSGFCKAGLSGEFGPRHMVSSIVGHLKFQAPSAEANQKKYFVGEEALYKQEALQLHSPFERGLITGWDDVERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEVMFENFGVPAFYLSDQAVLALYASACVTGLVVDSGDAVTCTVPIFEGYSLPHAVTKLHVAGRDITELLMQLLLASGHTFPCQLDKGLVDDIKKKLCYVALEPEKELSRRPEEVLREYKLPDGNIISLGDPLHQAPEALFVPQQLGSQSPGLSNMVSSSITKCDTDIQKILFGEIVLSGGTTLFHGLDDRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF", "length": 377 }, "evidence": [ { "id": "A0A4X1W8S9", "url": "https://omabrowser.org/oma/group/A0A4X1W8S9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9L5-1", "protein_name": "Actin-related protein T2", "gene_name": "Actrt2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFNPLVLDSPSVIFDNGSGLCKAGLSGEIGPRHVTSSVVGYPKFKAPPTGASQKKYFVGEEALYKQEALSLHYPIDRGLVTSWDDVEKLWRHLFEWELGVKPCERPVLVTEPSLNPRENREKTAEMMFETFEVPAFYLSDQAVLALYSSACVTGLVVDSGDGVTCTVPIYEGYSLPHAVSKLYVAGKDITELLTRLLLASGRAFPCPLEKALADDIKEKLCYVALEPEEELSRRAEDVLREYKLPDGNVIYIGDQLYQAPEVLFSPDQLGTHGPGLAQMASNSITKCDADIQKTLFGEIVLSGGSTLFQGLDDRLLKELEQLASKGVPIKITAPPDRWFSTWIGASIVTSLSSFKQMWITAADFKEFGVSVVQRRCF", "length": 377 }, "evidence": [ { "id": "A0A4X1W8S9", "url": "https://omabrowser.org/oma/group/A0A4X1W8S9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8S9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8S9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8S9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W8Z8-1", "uniprot_ac": "A0A4X1W8Z8", "uniprot_id": "A0A4X1W8Z8_PIG", "mass": { "chemical_mass": 28756.0, "monoisotopic_mass": 28756.0 }, "refseq": { "ac": "XP_003127539", "name": "ubiquitin-conjugating enzyme E2 J2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127539" }, "gene_names": [ { "name": "UBE2J2", "type": "recommended", "evidence": [ { "id": "A0A4X1W8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ] }, { "name": "UBE2J2", "type": "synonym", "evidence": [ { "id": "XP_003127539", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127539" } ] } ], "protein_names": [ { "name": "Ubiquitin-conjugating enzyme E2 J2", "type": "recommended", "evidence": [ { "id": "A0A4X1W8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.23", "type": "synonym", "evidence": [ { "id": "A0A4X1W8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin-conjugating enzyme E2 J2", "type": "synonym", "evidence": [ { "id": "XP_003127539", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127539" } ] } ], "function": [ { "annotation": "Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD). In cooperation with the GATOR2 complex, catalyzes 'Lys-6'-linked ubiquitination of NPRL2.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDR3#function" }, { "database": "UniProtKB", "id": "ARBA00054775", "url": "https://www.uniprot.org/uniprotkb/ARBA00054775#function" }, { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE2J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8", "locus": { "chromosome": "6", "start_pos": 63555488, "end_pos": 63568017, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003334", "url": "https://www.ensembl.org/id/ENSSSCG00000003334" } ] } } ], "crossref": [ { "id": "cd23799", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23799", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523610", "url": "https://www.ncbi.nlm.nih.gov/gene/100523610", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523610", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GWSVATI", "url": "https://omabrowser.org/oma/group/GWSVATI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W8Z8", "url": "https://www.orthodb.org/?gene=A0A4X1W8Z8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9609523", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9609523", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003127539", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127539", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W8Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F727", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F727", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F727-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F727-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSSGKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQNGLPILNGHAPGAGPHLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 259, "header": "tr|A0A4X1W8Z8-1|A0A4X1W8Z8_PIG Isoform 1 of Ubiquitin-conjugating enzyme E2 J2 OS=Sus scrofa OX=9823 GN=UBE2J2 PE=1 SV=1 CANONICAL=A0A4X1W8Z8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W8Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8/entry", "sequence": { "sequence": "MSSSSGKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQNGLPILNGHAPGAGPHLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 259, "header": "tr|A0A4X1W8Z8-1|A0A4X1W8Z8_PIG Isoform 1 of Ubiquitin-conjugating enzyme E2 J2 OS=Sus scrofa OX=9823 GN=UBE2J2 PE=1 SV=1 CANONICAL=A0A4X1W8Z8-1" }, "locus": { "chromosome": "6", "start_pos": 63564140, "end_pos": 63556501, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003701.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003701.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003615.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003615.4" } ] } }, { "isoform_ac": "A0A5G2QDR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDR3/entry", "sequence": { "sequence": "MGVRLTGVGFLQMSSSSGKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQNGLPILNGHAPGAGPHLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 271, "header": "tr|A0A5G2QDR3-1|A0A5G2QDR3_PIG Computationally mapped isoform of Ubiquitin-conjugating enzyme E2 J2 OS=Sus scrofa OX=9823 GN=UBE2J2 PE=1 SV=1 CANONICAL=A0A4X1W8Z8-1" }, "locus": { "chromosome": "6", "start_pos": 63564319, "end_pos": 63556501, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083860.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083860.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062772.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062772.2" } ] } }, { "isoform_ac": "A0A8W4F727-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F727/entry", "sequence": { "sequence": "RTPWLVVVGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQNGLPILNGHAPGAGPHLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 210, "header": "tr|A0A8W4F727-1|A0A8W4F727_PIG Computationally mapped isoform of Ubiquitin conjugating enzyme E2 J2 OS=Sus scrofa OX=9823 GN=UBE2J2 PE=1 SV=1 CANONICAL=A0A4X1W8Z8-1" }, "locus": { "chromosome": "6", "start_pos": 63558638, "end_pos": 63556501, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102612.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102612.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075036.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075036.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523610", "resource": "KEGG Pathway" }, { "id": "R-SSC-9609523", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9609523", "resource": "Reactome", "description": "Insertion of tail-anchored proteins into the endoplasmic reticulum membrane" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K8C5-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "Ube2j2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHQAKALDSARKMSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNRPQNLPLPDVVPDGEMHRGQNGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 271 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8C2MYE3-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "Ube2j2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTEIKQKQKAQDELSSRPQNLPLPDVVPDGEMHRGQNGLQLLNGHAPAAGPNLGGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 232 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P33296-1", "protein_name": "Ubiquitin-conjugating enzyme E2 6", "gene_name": "UBC6", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKTLARNSISYNTFQNVRFKLIFPEVVQENVETLEKRKLDEGDAANTGDETEDPFTKAAKEKVISLEEILDPEDRIRAEQALRQSENNSKKDGKEPNDSSSMVYIGIAIFLFLVGLFMK", "length": 250 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2TA03-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSNSVKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQALPLPDVVPDGETHHGQHGLPLLNGHAPGAGPHLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 259 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54AK6-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2-like", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSEHNSDIVHPPTKDCITRLKREFQEISKNPIENILVTPSPSNILEWHYVILGASNTPYEGGVYYGQLIFKYNYPLSPPSILMTTPSGRFETQKRLCLSISDYHPESWSPSWSTSSILLGLLSFMSDNEVTAGSIVTTNDEKRILATKSMDFNKKNKTFCELFPYLAMDE", "length": 170 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6P073-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "Ube2j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNNSNKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKKQLAAQSLVFNLKDKVFCELFPEVVEEIKQKQKAQDELSNRPQNLPLPDVVPDGELHRGQHGIQLLNGHAPAAGPNLAGLPQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 259 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N2K1-1", "protein_name": "Ubiquitin-conjugating enzyme E2 J2", "gene_name": "UBE2J2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE", "length": 259 }, "evidence": [ { "id": "A0A4X1W8Z8", "url": "https://omabrowser.org/oma/group/A0A4X1W8Z8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" }, { "name": "protein K6-linked ubiquitination", "id": "GO:0085020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0085020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-9609921", "name": "SGTA binds Tail-anchored protein", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9609921", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9609921" } ] }, { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983152", "name": "Transfer of ubiquitin from E1 to E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983152", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983152" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W8Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W8Z8" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 162, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W951-1", "uniprot_ac": "A0A4X1W951", "uniprot_id": "A0A4X1W951_PIG", "mass": { "chemical_mass": 14604.0, "monoisotopic_mass": 14604.0 }, "refseq": {}, "gene_names": [ { "name": "TPD52L3", "type": "recommended", "evidence": [ { "id": "A0A4X1W951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951" } ] } ], "protein_names": [ { "name": "TPD52 like 3", "type": "synonym", "evidence": [ { "id": "A0A4X1W951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W951", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TPD52L3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951", "locus": { "chromosome": "1", "start_pos": 215840563, "end_pos": 215842113, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021136", "url": "https://www.ensembl.org/id/ENSSSCG00000021136" } ] } } ], "crossref": [ { "id": "A0A4X1W951", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W951", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR007327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19307", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19307", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19307:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19307:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W951", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W951-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGAMTETSAGKNGSYLTAKPEDLTEVEQKELKSELSKLEAEIVTLRHALAAKERRCVELKRKLGLMTLAGLRQNLSKSWHDVQVSNDYMKQKTSAALSTMGSAIRRKLGDMKKSATFRSFEDNLNEGNRT", "length": 131, "header": "tr|A0A4X1W951-1|A0A4X1W951_PIG Isoform 1 of TPD52 like 3 OS=Sus scrofa OX=9823 GN=TPD52L3 PE=3 SV=1 CANONICAL=A0A4X1W951-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W951-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951/entry", "sequence": { "sequence": "MPGAMTETSAGKNGSYLTAKPEDLTEVEQKELKSELSKLEAEIVTLRHALAAKERRCVELKRKLGLMTLAGLRQNLSKSWHDVQVSNDYMKQKTSAALSTMGSAIRRKLGDMKKSATFRSFEDNLNEGNRT", "length": 131, "header": "tr|A0A4X1W951-1|A0A4X1W951_PIG Isoform 1 of TPD52 like 3 OS=Sus scrofa OX=9823 GN=TPD52L3 PE=3 SV=1 CANONICAL=A0A4X1W951-1" }, "locus": { "chromosome": "1", "start_pos": 215842113, "end_pos": 215840563, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026446.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026446.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025436.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025436.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W951", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W951", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W951" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 13, "end_pos": 15 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W9B8-1", "uniprot_ac": "A0A4X1W9B8", "uniprot_id": "A0A4X1W9B8_PIG", "mass": { "chemical_mass": 20665.0, "monoisotopic_mass": 20665.0 }, "refseq": { "ac": "NP_001171997", "name": "protein canopy homolog 2 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001171997" }, "gene_names": [ { "name": "CNPY2", "type": "recommended", "evidence": [ { "id": "A0A4X1W9B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8" } ] }, { "name": "CNPY2", "type": "synonym", "evidence": [ { "id": "NP_001171997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001171997" } ] } ], "protein_names": [ { "name": "Canopy FGF signaling regulator 2", "type": "synonym", "evidence": [ { "id": "A0A4X1W9B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8/entry#names_and_taxonomy" } ] }, { "name": "canopy 2 homolog", "type": "synonym", "evidence": [ { "id": "NP_001171997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001171997" } ] }, { "name": "protein canopy homolog 2 precursor", "type": "synonym", "evidence": [ { "id": "NP_001171997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001171997" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNPY2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8", "locus": { "chromosome": "5", "start_pos": 21707834, "end_pos": 21711292, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000394", "url": "https://www.ensembl.org/id/ENSSSCG00000000394" } ] } } ], "crossref": [ { "id": "A0A4X1W9B8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W9B8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100151912", "url": "https://www.ncbi.nlm.nih.gov/gene/100151912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151912", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HLKCLVC", "url": "https://omabrowser.org/oma/group/HLKCLVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W9B8", "url": "https://www.orthodb.org/?gene=A0A4X1W9B8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13341:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13341:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11938", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001171997", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001171997", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W9B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVGRNGESNELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182, "header": "tr|A0A4X1W9B8-1|A0A4X1W9B8_PIG Isoform 1 of Canopy FGF signaling regulator 2 OS=Sus scrofa OX=9823 GN=CNPY2 PE=1 SV=1 CANONICAL=A0A4X1W9B8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W9B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8/entry", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVGRNGESNELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182, "header": "tr|A0A4X1W9B8-1|A0A4X1W9B8_PIG Isoform 1 of Canopy FGF signaling regulator 2 OS=Sus scrofa OX=9823 GN=CNPY2 PE=1 SV=1 CANONICAL=A0A4X1W9B8-1" }, "locus": { "chromosome": "5", "start_pos": 21710147, "end_pos": 21707974, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000425.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000425.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000419.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000419.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151912", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HRP2-1", "protein_name": "Protein canopy homolog 2", "gene_name": "Cnpy2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKGWGWLALLLGVLLGTAWARRSQDLHCGACRALVDELEWEISRVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSRESDNVKDKLCSKRTDLCDHALHRSHDEL", "length": 182 }, "evidence": [ { "id": "A0A4X1W9B8", "url": "https://omabrowser.org/oma/group/A0A4X1W9B8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9QXT0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "Cnpy2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGWGWLALLLGVLLGTAWARRSQDLHCGACRALVDELEWEIARVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEVCDRMKEYGEQIDPSTHRKNYVRVVSRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHRSHDEL", "length": 182 }, "evidence": [ { "id": "A0A4X1W9B8", "url": "https://omabrowser.org/oma/group/A0A4X1W9B8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A4X1W9B8", "url": "https://omabrowser.org/oma/group/A0A4X1W9B8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9B8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W9B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9B8" }, { "id": "PS50015", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50015" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Saposin B-type", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 175, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W9I5-1", "uniprot_ac": "A0A4X1W9I5", "uniprot_id": "A0A4X1W9I5_PIG", "mass": { "chemical_mass": 27622.0, "monoisotopic_mass": 27622.0 }, "refseq": {}, "gene_names": [ { "name": "TMT1B", "type": "recommended", "evidence": [ { "id": "A0A4X1W9I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5" } ] } ], "protein_names": [ { "name": "Thiol methyltransferase 1B", "type": "synonym", "evidence": [ { "id": "A0A4X1W9I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9I5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMT1B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5", "locus": { "chromosome": "5", "start_pos": 21126607, "end_pos": 21123543, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036547", "url": "https://www.ensembl.org/id/ENSSSCG00000036547" } ] } } ], "crossref": [ { "id": "A0A4X1W9I5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W9I5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PPPIKWL", "url": "https://omabrowser.org/oma/group/PPPIKWL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W9I5", "url": "https://www.orthodb.org/?gene=A0A4X1W9I5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45036:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45036:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W9I5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDALVRLLQLLVLLLTLPLHLMALLGLWEPLCKSYFPYVMDVLTAKNNRKIESKKRELFSQIKGLAGASGKVALLELGSGTGANFQFYPAGCRITCLDPNPHFQTFLTKSMAENRHLEYERFVVAFGEDMKELADGSMDVVVSTLVLCSVQSPKRVLQEVQRVLRPGGLFFFWEHMAEPQGSWALLWQQVLEPTWKHIADGCCLTRETRKDLESAKFSELQMEQHPPLLKWLPVGPHIMGKAVK", "length": 244, "header": "tr|A0A4X1W9I5-1|A0A4X1W9I5_PIG Isoform 1 of Thiol methyltransferase 1B OS=Sus scrofa OX=9823 GN=TMT1B PE=4 SV=1 CANONICAL=A0A4X1W9I5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W9I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5/entry", "sequence": { "sequence": "MDALVRLLQLLVLLLTLPLHLMALLGLWEPLCKSYFPYVMDVLTAKNNRKIESKKRELFSQIKGLAGASGKVALLELGSGTGANFQFYPAGCRITCLDPNPHFQTFLTKSMAENRHLEYERFVVAFGEDMKELADGSMDVVVSTLVLCSVQSPKRVLQEVQRVLRPGGLFFFWEHMAEPQGSWALLWQQVLEPTWKHIADGCCLTRETRKDLESAKFSELQMEQHPPLLKWLPVGPHIMGKAVK", "length": 244, "header": "tr|A0A4X1W9I5-1|A0A4X1W9I5_PIG Isoform 1 of Thiol methyltransferase 1B OS=Sus scrofa OX=9823 GN=TMT1B PE=4 SV=1 CANONICAL=A0A4X1W9I5-1" }, "locus": { "chromosome": "5", "start_pos": 21126086, "end_pos": 21124021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060654.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060654.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032175.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032175.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9I5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BGA1-1", "protein_name": "Thiol methyltransferase 1B", "gene_name": "TMT1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDALVRLLQLLVFLLTLPLHLMALLGFWEPLCKTYFPYLMAVLTVKNNRVMENKKRELFSQINGLAGTSGKVALLELGCGTGANFRFYPAGCKITCLDPNPHFEKFLTKSMAENRHLEYERFVVAFGEDMRQLADGSMDAVVSTLVLCSVESPKRVLQEVRRVLRPGGVFFFWEHMAEPRGSWAFLWQQVLEPTWKHIGDGCHLTRETWRDLENAQFSELQVEQQPPPIKWLPVGPHIMGKAVK", "length": 244 }, "evidence": [ { "id": "A0A4X1W9I5", "url": "https://omabrowser.org/oma/group/A0A4X1W9I5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HRM2-1", "protein_name": "Methyltransferase-like protein 7B", "gene_name": "Mettl7b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGVLVPFLQLLVLLLTLPLHLLALVGFWQPVCKTYFPYLMAKLTERANKKMESKKRELFSQIKDLKGTSGKVALLELGCGTGANFQFYPPNCRVTCVDPNPNFEKFLTKSMAENKHLQYERFIVAYGEDMRQLADSSMDVVVCTLVLCSVRSPKKVLQEIQRVLKPGGLLFFWEHVAEPRGSWAFLWQQVFEPTWKHIGDGCHLTRETWKDLEKARFSDVQMERQSPPFKWLPIGPHIMGKAVK", "length": 244 }, "evidence": [ { "id": "A0A4X1W9I5", "url": "https://omabrowser.org/oma/group/A0A4X1W9I5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q562C4-1", "protein_name": "Thiol S-methyltransferase TMT1B", "gene_name": "Tmt1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVLVPLLQLLVLLLTLPLHLLALLGCWQPICKTYFPYLMATLTARSYKKMESKKRELFSQIKDLKGTSNEVTLLELGCGTGANFQFYPPGCKVTCVDPNPNFEKFLTKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKVLQEVQRVLKPGGLLFFWEHVSEPQGSQALLWQRVLEPTWKHIGDGCHLTRETWKDIEKAQFSEVQLEWQPPPFKWLPVGPHIMGKAVK", "length": 244 }, "evidence": [ { "id": "A0A4X1W9I5", "url": "https://omabrowser.org/oma/group/A0A4X1W9I5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6UX53-1", "protein_name": "Thiol S-methyltransferase TMT1B", "gene_name": "TMT1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFSQIKGLTGASGKVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYERFVVAPGEDMRQLADGSMDVVVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPYGSWAFMWQQVFEPTWKHIGDGCCLTRETWKDLENAQFSEIQMERQPPPLKWLPVGPHIMGKAVK", "length": 244 }, "evidence": [ { "id": "A0A4X1W9I5", "url": "https://omabrowser.org/oma/group/A0A4X1W9I5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DD20-1", "protein_name": "Thiol S-methyltransferase TMT1B", "gene_name": "Tmt1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDALVLFLQLLVLLLTLPLHLLALLGCWQPICKTYFPYFMAMLTARSYKKMESKKRELFSQIKDLKGTSGNVALLELGCGTGANFQFYPQGCKVTCVDPNPNFEKFLTKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKVLQEVQRVLRPGGLLFFWEHVAEPQGSRAFLWQRVLEPTWKHIGDGCHLTRETWKDIERAQFSEVQLEWQPPPFRWLPVGPHIMGKAVK", "length": 244 }, "evidence": [ { "id": "A0A4X1W9I5", "url": "https://omabrowser.org/oma/group/A0A4X1W9I5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "thiol S-methyltransferase activity", "id": "GO:0018708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018708", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9I5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W9I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9I5" }, { "id": "PF08241", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08241" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase type 11", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 172, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W9L8-1", "uniprot_ac": "A0A4X1W9L8", "uniprot_id": "A0A4X1W9L8_PIG", "mass": { "chemical_mass": 37368.0, "monoisotopic_mass": 37368.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM198B", "type": "recommended", "evidence": [ { "id": "A0A4X1W9L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ] } ], "protein_names": [ { "name": "Transmembrane protein 198", "type": "recommended", "evidence": [ { "id": "A0A4X1W9L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM198B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8", "locus": {} } ], "crossref": [ { "id": "A0A4X1W9L8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W9L8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100523964", "url": "https://www.ncbi.nlm.nih.gov/gene/100523964", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523964", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523964", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LLPLCWY", "url": "https://omabrowser.org/oma/group/LLPLCWY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W9L8", "url": "https://www.orthodb.org/?gene=A0A4X1W9L8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31247:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31247:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEALLPLAMTSDPRPFNQQLPEPPDPRCVLEPQDNPELAPALVCALCCCFGIIYCCFGYRCFKAVMFLSGLLSGALVIFLLCHKERVLETQLSLEVSAGIALGIGLLCGLVTMLVRSVGLFLTGLLLGLTLGSGVLLGTEPIYQPPSAWVPAGGLVGLALLGALFTLRWPRPFTVLGTALLGAAVLVACADYFLEGLALGSRLGQRLQALPALPPLCWYSWVLLGTWPALGALGALAQWKLMDEEHGGHANVVLSQQRRHLQLLRIRQQEAKWHRTSPGVGLCEGSYRRQLPASARSPADSLAPSYLQSLRERQLGPGTQATAPHTVLDLDSDCGSTVPLTTPGSTRT", "length": 349, "header": "tr|A0A4X1W9L8-1|A0A4X1W9L8_PIG Isoform 1 of Transmembrane protein 198 OS=Sus scrofa OX=9823 GN=TMEM198B PE=3 SV=1 CANONICAL=A0A4X1W9L8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W9L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8/entry", "sequence": { "sequence": "MEEALLPLAMTSDPRPFNQQLPEPPDPRCVLEPQDNPELAPALVCALCCCFGIIYCCFGYRCFKAVMFLSGLLSGALVIFLLCHKERVLETQLSLEVSAGIALGIGLLCGLVTMLVRSVGLFLTGLLLGLTLGSGVLLGTEPIYQPPSAWVPAGGLVGLALLGALFTLRWPRPFTVLGTALLGAAVLVACADYFLEGLALGSRLGQRLQALPALPPLCWYSWVLLGTWPALGALGALAQWKLMDEEHGGHANVVLSQQRRHLQLLRIRQQEAKWHRTSPGVGLCEGSYRRQLPASARSPADSLAPSYLQSLRERQLGPGTQATAPHTVLDLDSDCGSTVPLTTPGSTRT", "length": 349, "header": "tr|A0A4X1W9L8-1|A0A4X1W9L8_PIG Isoform 1 of Transmembrane protein 198 OS=Sus scrofa OX=9823 GN=TMEM198B PE=3 SV=1 CANONICAL=A0A4X1W9L8-1" }, "locus": { "chromosome": "5", "start_pos": 21278213, "end_pos": 21276054, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065735.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065735.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041215.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041215.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523964", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523964", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9L8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W9L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9L8" }, { "id": "PF13886", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13886" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TM7S3/TM198-like", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 240, "start_aa": "Cys", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WA08-1", "uniprot_ac": "A0A4X1WA08", "uniprot_id": "A0A4X1WA08_PIG", "mass": { "chemical_mass": 24951.0, "monoisotopic_mass": 24951.0 }, "refseq": { "ac": "XP_005660159", "name": "leucine rich adaptor protein 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660159" }, "gene_names": [ { "name": "LURAP1L", "type": "recommended", "evidence": [ { "id": "A0A4X1WA08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08" } ] }, { "name": "LURAP1L", "type": "synonym", "evidence": [ { "id": "XP_005660159", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660159" } ] } ], "protein_names": [ { "name": "Leucine rich adaptor protein 1 like", "type": "synonym", "evidence": [ { "id": "A0A4X1WA08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08/entry#names_and_taxonomy" } ] }, { "name": "leucine rich adaptor protein 1-like", "type": "synonym", "evidence": [ { "id": "XP_005660159", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660159" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LURAP1L", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08", "locus": { "chromosome": "1", "start_pos": 209620907, "end_pos": 209668913, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036360", "url": "https://www.ensembl.org/id/ENSSSCG00000036360" } ] } } ], "crossref": [ { "id": "A0A4X1WA08", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WA08", "database": "AlphaFoldDB", "categories": [] }, { "id": "102165373", "url": "https://www.ncbi.nlm.nih.gov/gene/102165373", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102165373", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165373", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QPLHKHP", "url": "https://omabrowser.org/oma/group/QPLHKHP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WA08", "url": "https://www.orthodb.org/?gene=A0A4X1WA08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33767:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33767:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660159", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660159", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WA08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WA08-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDGPLPDLRDIELKLGRKVPESLVRSLRGEESVSQERDRDPRGGSSNSSSGGGGCMSSSSSSSCSFPLSLSSSSSSSPTSISPRRSHSSSALERLETKLHLLRQEMVNLRATDVRLMRQLLLINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFTDSSILADSQTVHKRPKLDSEYYCFG", "length": 231, "header": "tr|A0A4X1WA08-1|A0A4X1WA08_PIG Isoform 1 of Leucine rich adaptor protein 1 like OS=Sus scrofa OX=9823 GN=LURAP1L PE=4 SV=1 CANONICAL=A0A4X1WA08-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WA08-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08/entry", "sequence": { "sequence": "MEDGPLPDLRDIELKLGRKVPESLVRSLRGEESVSQERDRDPRGGSSNSSSGGGGCMSSSSSSSCSFPLSLSSSSSSSPTSISPRRSHSSSALERLETKLHLLRQEMVNLRATDVRLMRQLLLINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFTDSSILADSQTVHKRPKLDSEYYCFG", "length": 231, "header": "tr|A0A4X1WA08-1|A0A4X1WA08_PIG Isoform 1 of Leucine rich adaptor protein 1 like OS=Sus scrofa OX=9823 GN=LURAP1L PE=4 SV=1 CANONICAL=A0A4X1WA08-1" }, "locus": { "chromosome": "1", "start_pos": 209668206, "end_pos": 209622073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056997.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056997.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049129.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049129.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165373", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165373", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YUL6-1", "protein_name": "Leucine rich adaptor protein 1 like", "gene_name": "LURAP1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPGAAPDLRDVEQKLGRKVPESLARPLRGEEHPGRTAAAAEPARGPAAAPSRRRAAALARLENKLRLLRQEMINLRATDVKLMRQLLIINESIESIKWMIEEKAIASRGSSLSGSLCSLLESQDTSFHGSCNSLQDCSDGLDGISVGSYLDTLVDDVPGHQTPSDVDQFSDSSVMEDSQPVHKHPKIDSDEYYCFG", "length": 197 }, "evidence": [ { "id": "A0A4X1WA08", "url": "https://omabrowser.org/oma/group/A0A4X1WA08/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5BJW5-1", "protein_name": "Leucine rich adaptor protein 1-like", "gene_name": "Lurap1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDGPLPDLRDIELKLGRKVPESLARSLRGEEPAPREGAADPSGVGGSCSSSSSCSSFAPSVSSSSSSSPASGSPRRSHPSALERLETKLHILRQEMVNLRATDVRLMRQLLLINESIESIKWMIEEKATVTSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFSDSSIIEDSQALHKHPKLDSEYYCFG", "length": 221 }, "evidence": [ { "id": "A0A4X1WA08", "url": "https://omabrowser.org/oma/group/A0A4X1WA08/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IV03-1", "protein_name": "Leucine rich adaptor protein 1-like", "gene_name": "LURAP1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDSEYYCFG", "length": 228 }, "evidence": [ { "id": "A0A4X1WA08", "url": "https://omabrowser.org/oma/group/A0A4X1WA08/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K2P1-1", "protein_name": "Leucine rich adaptor protein 1-like", "gene_name": "Lurap1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSPLPDLRDIELKLGRKVPESLARSLRGEELAPREGAADPSGVGGSCSSSSSCSSFAPSVSSSSSSSPASGSPRRSHPSALERLETKLHILRQEMVNLRATDVRLMRQLLLINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQTPSDLDQFSDSSIIEDSQALHKHPKLDSEYYCFG", "length": 221 }, "evidence": [ { "id": "A0A4X1WA08", "url": "https://omabrowser.org/oma/group/A0A4X1WA08/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WAD5-1", "uniprot_ac": "A0A4X1WAD5", "uniprot_id": "A0A4X1WAD5_PIG", "mass": { "chemical_mass": 19117.0, "monoisotopic_mass": 19117.0 }, "refseq": { "ac": "XP_003126253", "name": "gametocyte-specific factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126253" }, "gene_names": [ { "name": "GTSF1", "type": "recommended", "evidence": [ { "id": "A0A4X1WAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ] }, { "name": "GTSF1", "type": "synonym", "evidence": [ { "id": "XP_003126253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126253" } ] } ], "protein_names": [ { "name": "Gametocyte specific factor 1", "type": "synonym", "evidence": [ { "id": "A0A4X1WAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5/entry#names_and_taxonomy" } ] }, { "name": "gametocyte-specific factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126253" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GTSF1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5", "locus": { "chromosome": "5", "start_pos": 19645135, "end_pos": 19661599, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026333", "url": "https://www.ensembl.org/id/ENSSSCG00000026333" } ] } } ], "crossref": [ { "id": "A0A4X1WAD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WAD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100521495", "url": "https://www.ncbi.nlm.nih.gov/gene/100521495", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521495", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521495", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TANFCGN", "url": "https://omabrowser.org/oma/group/TANFCGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WAD5", "url": "https://www.orthodb.org/?gene=A0A4X1WAD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21402", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21402", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21402:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21402:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05253", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05253", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126253", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEETYIDSLDPEKLIQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTTFVWGTANYCGNNSPASNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ", "length": 167, "header": "tr|A0A4X1WAD5-1|A0A4X1WAD5_PIG Isoform 1 of Gametocyte specific factor 1 OS=Sus scrofa OX=9823 GN=GTSF1 PE=4 SV=1 CANONICAL=A0A4X1WAD5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WAD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5/entry", "sequence": { "sequence": "MEETYIDSLDPEKLIQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTTFVWGTANYCGNNSPASNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ", "length": 167, "header": "tr|A0A4X1WAD5-1|A0A4X1WAD5_PIG Isoform 1 of Gametocyte specific factor 1 OS=Sus scrofa OX=9823 GN=GTSF1 PE=4 SV=1 CANONICAL=A0A4X1WAD5-1" }, "locus": { "chromosome": "5", "start_pos": 19658681, "end_pos": 19645158, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031179.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031179.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025386.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025386.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521495", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521495", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3SZU0-1", "protein_name": "Gametocyte-specific factor 1", "gene_name": "GTSF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEETYIDTLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRSLGQETMAESTWRCPPCDEDWDKDLWEQTSTPFVWGTANYCGNNSPASNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ", "length": 167 }, "evidence": [ { "id": "A0A4X1WAD5", "url": "https://omabrowser.org/oma/group/A0A4X1WAD5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8WW33-1", "protein_name": "Gametocyte-specific factor 1", "gene_name": "GTSF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTTHYSDNNSPASNIVTEHKNNLASGMRVPKSLPYVLPWKNNGNAQ", "length": 167 }, "evidence": [ { "id": "A0A4X1WAD5", "url": "https://omabrowser.org/oma/group/A0A4X1WAD5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAN6-1", "protein_name": "Gametocyte-specific factor 1", "gene_name": "Gtsf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPPCDEDWDKDLWEQTSTPFVWGTASFCGNNSPANNIVMEHKSNLASGMRVPKSLPYVLPWKNNGNAQ", "length": 167 }, "evidence": [ { "id": "A0A4X1WAD5", "url": "https://omabrowser.org/oma/group/A0A4X1WAD5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "piP-body", "id": "GO:0071547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071547", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "secondary piRNA processing", "id": "GO:0140965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140965", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "pmid": "" }, { "name": "piRNA-mediated gene silencing by mRNA destabilization", "id": "GO:0140991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140991", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WAD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAD5" }, { "id": "PS51800", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51800" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CHHC U11-48K-type", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 41, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WAH5-1", "uniprot_ac": "A0A4X1WAH5", "uniprot_id": "A0A4X1WAH5_PIG", "mass": { "chemical_mass": 11309.0, "monoisotopic_mass": 11309.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "GC-rich promoter binding protein 1 like 1", "type": "synonym", "evidence": [ { "id": "A0A4X1WAH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5", "locus": {} } ], "crossref": [ { "id": "A0A4X1WAH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WAH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR038800", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038800", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33820", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33820", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33820:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33820:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WAH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASHSREPGLLPCGSCDMVFRSWALLATHTQRFCIGRLTRQVTVGAQPPVHSEPRLLAVPSSSSLEASSLAPTAGFVDPPPPEPPRGRGKQSDEGLGLHSCDRPPAS", "length": 107, "header": "tr|A0A4X1WAH5-1|A0A4X1WAH5_PIG Isoform 1 of GC-rich promoter binding protein 1 like 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WAH5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WAH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5/entry", "sequence": { "sequence": "MASHSREPGLLPCGSCDMVFRSWALLATHTQRFCIGRLTRQVTVGAQPPVHSEPRLLAVPSSSSLEASSLAPTAGFVDPPPPEPPRGRGKQSDEGLGLHSCDRPPAS", "length": 107, "header": "tr|A0A4X1WAH5-1|A0A4X1WAH5_PIG Isoform 1 of GC-rich promoter binding protein 1 like 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WAH5-1" }, "locus": { "chromosome": "6", "start_pos": 165772538, "end_pos": 165768913, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027507.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027507.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024784.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024784.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 43, "start_aa": "Thr", "end_pos": 43, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 43 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WAK1-1", "uniprot_ac": "A0A4X1WAK1", "uniprot_id": "A0A4X1WAK1_PIG", "mass": { "chemical_mass": 12612.0, "monoisotopic_mass": 12612.0 }, "refseq": {}, "gene_names": [ { "name": "NPFF", "type": "recommended", "evidence": [ { "id": "A0A4X1WAK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ] } ], "protein_names": [ { "name": "Neuropeptide FF-amide peptide", "type": "synonym", "evidence": [ { "id": "A0A4X1WAK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPFF", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1", "locus": { "chromosome": "5", "start_pos": 18723784, "end_pos": 18724826, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000277", "url": "https://www.ensembl.org/id/ENSSSCG00000000277" } ] } } ], "crossref": [ { "id": "A0A4X1WAK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WAK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR008065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15044", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15044", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15044:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15044:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-389397", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389397", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSRRAAVLLLLLLLVTDWGHAEGPGRRQGDQVFWEEDSGALPPQDAQTPGSLLRSLLQAMQRPGRSPAFLFQPQRFGRNTRGSWSNERLSPRAGGALSSPFWSLAAPQRFGKK", "length": 114, "header": "tr|A0A4X1WAK1-1|A0A4X1WAK1_PIG Isoform 1 of Neuropeptide FF-amide peptide OS=Sus scrofa OX=9823 GN=NPFF PE=4 SV=1 CANONICAL=A0A4X1WAK1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WAK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1/entry", "sequence": { "sequence": "MDSRRAAVLLLLLLLVTDWGHAEGPGRRQGDQVFWEEDSGALPPQDAQTPGSLLRSLLQAMQRPGRSPAFLFQPQRFGRNTRGSWSNERLSPRAGGALSSPFWSLAAPQRFGKK", "length": 114, "header": "tr|A0A4X1WAK1-1|A0A4X1WAK1_PIG Isoform 1 of Neuropeptide FF-amide peptide OS=Sus scrofa OX=9823 GN=NPFF PE=4 SV=1 CANONICAL=A0A4X1WAK1-1" }, "locus": { "chromosome": "5", "start_pos": 18724826, "end_pos": 18724167, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000298.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000298.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000293.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000293.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-389397", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389397", "resource": "Reactome", "description": "Orexin and neuropeptides FF and QRFP bind to their respective receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "perikaryon", "id": "GO:0043204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043204", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "axon terminus", "id": "GO:0043679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043679", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuropeptide signaling pathway", "id": "GO:0007218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007218", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "excitatory postsynaptic potential", "id": "GO:0060079", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060079", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor binding", "id": "GO:0001664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001664", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" }, { "name": "neuropeptide hormone activity", "id": "GO:0005184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005184", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WAX0-1", "uniprot_ac": "A0A4X1WAX0", "uniprot_id": "A0A4X1WAX0_PIG", "mass": { "chemical_mass": 17444.0, "monoisotopic_mass": 17444.0 }, "refseq": { "ac": "XP_003482134", "name": "RING finger protein 11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482134" }, "gene_names": [ { "name": "RNF11", "type": "recommended", "evidence": [ { "id": "A0A4X1WAX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ] }, { "name": "RNF11", "type": "synonym", "evidence": [ { "id": "XP_003482134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482134" } ] } ], "protein_names": [ { "name": "RING finger protein 11", "type": "recommended", "evidence": [ { "id": "A0A4X1WAX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 11", "type": "synonym", "evidence": [ { "id": "XP_003482134", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482134" } ] } ], "function": [ { "annotation": "Essential component of a ubiquitin-editing protein complex, comprising also TNFAIP3, ITCH and TAX1BP1, that ensures the transient nature of inflammatory signaling pathways. Promotes the association of TNFAIP3 to RIPK1 after TNF stimulation. TNFAIP3 deubiquitinates 'Lys-63' polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NF-kappa-B. Recruits STAMBP to the E3 ubiquitin-ligase SMURF2 for ubiquitination, leading to its degradation by the 26S proteasome.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0#function" }, { "database": "UniProtKB", "id": "ARBA00055330", "url": "https://www.uniprot.org/uniprotkb/ARBA00055330#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF11", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0", "locus": { "chromosome": "6", "start_pos": 160875771, "end_pos": 160911629, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031172", "url": "https://www.ensembl.org/id/ENSSSCG00000031172" } ] } } ], "crossref": [ { "id": "A0A4X1WAX0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WAX0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16468", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16468", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736575", "url": "https://www.ncbi.nlm.nih.gov/gene/100736575", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736575", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736575", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HLDCIDN", "url": "https://omabrowser.org/oma/group/HLDCIDN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WAX0", "url": "https://www.orthodb.org/?gene=A0A4X1WAX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46359:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46359:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482134", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482134", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154, "header": "tr|A0A4X1WAX0-1|A0A4X1WAX0_PIG Isoform 1 of RING finger protein 11 OS=Sus scrofa OX=9823 GN=RNF11 PE=1 SV=1 CANONICAL=A0A4X1WAX0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WAX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0/entry", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154, "header": "tr|A0A4X1WAX0-1|A0A4X1WAX0_PIG Isoform 1 of RING finger protein 11 OS=Sus scrofa OX=9823 GN=RNF11 PE=1 SV=1 CANONICAL=A0A4X1WAX0-1" }, "locus": { "chromosome": "6", "start_pos": 160911176, "end_pos": 160877814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037431.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037431.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052054.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052054.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 52, "start_aa": "Thr", "end_pos": 52, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr52", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736575", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736575", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0V2S5-1", "protein_name": "RING finger protein 11", "gene_name": "rnf11b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGDANDPDQEPPPPYQEQIHVPVYHPTPSQARLATQLTEEEQVRIAQRIGLIQHLPKGVYDPGSDGTEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1NLF7-1", "protein_name": "RING finger protein 11", "gene_name": "RNF11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASYGDGAEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GVY1-1", "protein_name": "RING finger protein 11", "gene_name": "Rnf11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08DI6-1", "protein_name": "RING finger protein 11", "gene_name": "RNF11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9QYK7-1", "protein_name": "RING finger protein 11", "gene_name": "Rnf11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPIYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3C5-1", "protein_name": "RING finger protein 11", "gene_name": "RNF11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN", "length": 154 }, "evidence": [ { "id": "A0A4X1WAX0", "url": "https://omabrowser.org/oma/group/A0A4X1WAX0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" }, { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" }, { "name": "protein autoubiquitination", "id": "GO:0051865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051865", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WAX0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WAX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAX0" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 139, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 52 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WB15-1", "uniprot_ac": "A0A4X1WB15", "uniprot_id": "A0A4X1WB15_PIG", "mass": { "chemical_mass": 17271.0, "monoisotopic_mass": 17271.0 }, "refseq": { "ac": "XP_020952313", "name": "transcription factor BTF3 homolog 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952313" }, "gene_names": [ { "name": "BTF3L4", "type": "recommended", "evidence": [ { "id": "A0A4X1WB15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15" } ] }, { "name": "BTF3L4", "type": "synonym", "evidence": [ { "id": "XP_020952313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952313" } ] } ], "protein_names": [ { "name": "Transcription factor BTF3", "type": "recommended", "evidence": [ { "id": "A0A4X1WB15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15/entry#names_and_taxonomy" } ] }, { "name": "transcription factor BTF3 homolog 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020952313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952313" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WB15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BTF3L4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15", "locus": { "chromosome": "6", "start_pos": 160108138, "end_pos": 160136168, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038762", "url": "https://www.ensembl.org/id/ENSSSCG00000038762" } ] } } ], "crossref": [ { "id": "A0A4X1WB15", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WB15", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038762", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038762", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736651", "url": "https://www.ncbi.nlm.nih.gov/gene/100736651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736651", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RMQQSVR", "url": "https://omabrowser.org/oma/group/RMQQSVR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WB15", "url": "https://www.orthodb.org/?gene=A0A4X1WB15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10351", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10351", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952313", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952313", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BEU1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WB15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WB15-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158, "header": "tr|A0A4X1WB15-1|A0A4X1WB15_PIG Isoform 1 of Transcription factor BTF3 OS=Sus scrofa OX=9823 GN=BTF3L4 PE=1 SV=1 CANONICAL=A0A4X1WB15-1" }, "isoforms": [ { "isoform_ac": "A0A287BEU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEU1/entry", "sequence": { "sequence": "MIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 100, "header": "tr|A0A287BEU1-1|A0A287BEU1_PIG Computationally mapped isoform of Transcription factor BTF3 OS=Sus scrofa OX=9823 GN=BTF3L4 PE=1 SV=2 CANONICAL=A0A4X1WB15-1" }, "locus": { "chromosome": "6", "start_pos": 160114083, "end_pos": 160111152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051514.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051514.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054640.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054640.2" } ] } }, { "isoform_ac": "A0A4X1WB15-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15/entry", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158, "header": "tr|A0A4X1WB15-1|A0A4X1WB15_PIG Isoform 1 of Transcription factor BTF3 OS=Sus scrofa OX=9823 GN=BTF3L4 PE=1 SV=1 CANONICAL=A0A4X1WB15-1" }, "locus": { "chromosome": "6", "start_pos": 160132896, "end_pos": 160111152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054522.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054522.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053541.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053541.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WB15", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736651", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736651", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A3I4-1", "protein_name": "Transcription factor BTF3", "gene_name": "Btf3l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GVZ1-1", "protein_name": "Transcription factor BTF3", "gene_name": "Btf3l4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q02642-1", "protein_name": "Nascent polypeptide-associated complex subunit beta-1", "gene_name": "EGD1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPIDQEKLAKLQKLSANNKVGGTRRKLNKKAGSSAGANKDDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNLQDLFPGIISQLGPEAIQALSQLAAQMEKHEAKAPADAEKKDEAIPELVEGQTFDADVE", "length": 157 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2KIY7-1", "protein_name": "Transcription factor BTF3 homolog 4", "gene_name": "BTF3L4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEEDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PC91-1", "protein_name": "Transcription factor BTF3 homolog 4", "gene_name": "btf3l4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQVLDNKAPKAEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96K17-1", "protein_name": "Transcription factor BTF3 homolog 4", "gene_name": "BTF3L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CAT7-1", "protein_name": "Nascent polypeptide-associated complex subunit beta", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEEAPKAAAS", "length": 165 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQH7-1", "protein_name": "Transcription factor BTF3 homolog 4", "gene_name": "Btf3l4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN", "length": 158 }, "evidence": [ { "id": "A0A4X1WB15", "url": "https://omabrowser.org/oma/group/A0A4X1WB15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WB15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB15" }, { "id": "PS51151", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51151" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAC-A/B", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 98, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBL8-1", "uniprot_ac": "A0A4X1WBL8", "uniprot_id": "A0A4X1WBL8_PIG", "mass": { "chemical_mass": 65348.0, "monoisotopic_mass": 65348.0 }, "refseq": { "ac": "XP_005662584", "name": "proto-oncogene c-Rel isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662584" }, "gene_names": [ { "name": "REL", "type": "recommended", "evidence": [ { "id": "A0A4X1WBL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ] }, { "name": "REL", "type": "synonym", "evidence": [ { "id": "XP_005662584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662584" } ] } ], "protein_names": [ { "name": "REL proto-onco, NF-kB subunit", "type": "synonym", "evidence": [ { "id": "A0A4X1WBL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8/entry#names_and_taxonomy" } ] }, { "name": "proto-oncogene c-Rel isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005662584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662584" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "REL", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8", "locus": { "chromosome": "3", "start_pos": 80872255, "end_pos": 80911939, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008388", "url": "https://www.ensembl.org/id/ENSSSCG00000008388" } ] } } ], "crossref": [ { "id": "A0A4X1WBL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01177", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01177", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525104", "url": "https://www.ncbi.nlm.nih.gov/gene/100525104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525104", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCPVNMM", "url": "https://omabrowser.org/oma/group/NCPVNMM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WBL8", "url": "https://www.orthodb.org/?gene=A0A4X1WBL8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24169:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24169:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005662584", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662584", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGGYNPYIEITEQPRQRGMRFRYKCEGRSAGSIPGEHSTDSSRTYPSIQIKNYFGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLCFQNLGIRCVKKKEVKEAIISRIRAGINPFNVPEQQLLDIEDCDLNVVRLCFQVFLPDEHGNLTSALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPYCKAIIEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKLWQDCGVNFPERPRPNPLGTMGEGRFIKKESNLFSHGAVLTETSRPVSSQAESYYSSSISSALSHPASTIPTMVPQPSSSWSSVARPTSRSVNTNSLSGFSPGTLSSNSHVITPFLEMPVMNDLNTSNACIYNNTNDIGRMEASSVSPADLYGISDASMLPHCPVNMITPSNDSMRETDNPRLVSVNLENPSCNSVLDPRDLRQLHQMSSSSMSTVTSSSTTAFVSQSEAFEGSDFNCADNSMINESGPSNSTNPNSHGFVQNSQYSGIGTTQNEQLSDSFAFEFF", "length": 588, "header": "tr|A0A4X1WBL8-1|A0A4X1WBL8_PIG Isoform 1 of REL proto-onco, NF-kB subunit OS=Sus scrofa OX=9823 GN=REL PE=4 SV=1 CANONICAL=A0A4X1WBL8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WBL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8/entry", "sequence": { "sequence": "MASGGYNPYIEITEQPRQRGMRFRYKCEGRSAGSIPGEHSTDSSRTYPSIQIKNYFGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLCFQNLGIRCVKKKEVKEAIISRIRAGINPFNVPEQQLLDIEDCDLNVVRLCFQVFLPDEHGNLTSALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPYCKAIIEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKLWQDCGVNFPERPRPNPLGTMGEGRFIKKESNLFSHGAVLTETSRPVSSQAESYYSSSISSALSHPASTIPTMVPQPSSSWSSVARPTSRSVNTNSLSGFSPGTLSSNSHVITPFLEMPVMNDLNTSNACIYNNTNDIGRMEASSVSPADLYGISDASMLPHCPVNMITPSNDSMRETDNPRLVSVNLENPSCNSVLDPRDLRQLHQMSSSSMSTVTSSSTTAFVSQSEAFEGSDFNCADNSMINESGPSNSTNPNSHGFVQNSQYSGIGTTQNEQLSDSFAFEFF", "length": 588, "header": "tr|A0A4X1WBL8-1|A0A4X1WBL8_PIG Isoform 1 of REL proto-onco, NF-kB subunit OS=Sus scrofa OX=9823 GN=REL PE=4 SV=1 CANONICAL=A0A4X1WBL8-1" }, "locus": { "chromosome": "3", "start_pos": 80911666, "end_pos": 80876358, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054060.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054060.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055999.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055999.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525104", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" } ], "orthologs": [ { "uniprot_canonical_ac": "F1M5R1-1", "protein_name": "REL proto-oncogene, NF-kB subunit", "gene_name": "Rel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSGYNPYVEIIEQPRQRGMRFRYKCEGRSAGSIPGERSTDNNRTYPSIQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGPERRPLFFQNLGIRCVKKKEVKEAIILRISAGINPFNVPEQQLLDIEDCDLNVVRLCFQVFLPDEHGNFTTALPPIVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFRTPPYCRAIVEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDAYGNKSKKQKTTLIFQKLLQDCEKRIIPSHFPEKTRAVPLESIGETRFIKKESNLFSHGTVLPETPRSSGVPGQAEPYYSSSGSISNALPHHPSAMPSMVHQPASWSPVTHPTSHPGSTNTLSSFPAGQLSSNSQGVLPFLDGAGMNDLSASNACLFSTDNLARMETPSMSPTDLYSISDVNMLTNRPVSVMTSSTDGMGDTDHPRLVSVNLENPSCNSRLDPRDPRQLHQMSTASMSAAGTSSSSVFVSQSDTFNRPHFSCIDNGLTNEPGLANDAHHPNFAQSSQYSGIDALQSEQLGDSFEYSFFKI", "length": 595 }, "evidence": [ { "id": "A0A4X1WBL8", "url": "https://omabrowser.org/oma/group/A0A4X1WBL8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q04864-1", "protein_name": "Proto-oncogene c-Rel", "gene_name": "REL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASGAYNPYIEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNRTYPSIQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAIITRIKAGINPFNVPEKQLNDIEDCDLNVVRLCFQVFLPDEHGNLTTALPPVVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEAKGIFSQADVHRQVAIVFKTPPYCKAITEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDTYGNKAKKQKTTLLFQKLCQDHVETGFRHVDQDGLELLTSGDPPTLASQSAGITVNFPERPRPGLLGSIGEGRYFKKEPNLFSHDAVVREMPTGVSSQAESYYPSPGPISSGLSHHASMAPLPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIPVGNDLNASNACIYNNADDIVGMEASSMPSADLYGISDPNMLSNCSVNMMTTSSDSMGETDNPRLLSMNLENPSCNSVLDPRDLRQLHQMSSSSMSAGANSNTTVFVSQSDAFEGSDFSCADNSMINESGPSNSTNPNSHGFVQDSQYSGIGSMQNEQLSDSFPYEFFQV", "length": 619 }, "evidence": [ { "id": "A0A4X1WBL8", "url": "https://omabrowser.org/oma/group/A0A4X1WBL8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "response to cytokine", "id": "GO:0034097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034097", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "canonical NF-kappaB signal transduction", "id": "GO:0007249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007249", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "non-canonical NF-kappaB signal transduction", "id": "GO:0038061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038061", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "negative regulation of interferon-beta production", "id": "GO:0032688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032688", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBL8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 474, "end_pos": 476, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 427, "end_pos": 429 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 474, "end_pos": 476 }, { "start_pos": 547, "end_pos": 549 }, { "start_pos": 553, "end_pos": 555 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBW5-1", "uniprot_ac": "A0A4X1WBW5", "uniprot_id": "A0A4X1WBW5_PIG", "mass": { "chemical_mass": 5429.0, "monoisotopic_mass": 5429.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Peroxisomal biosis factor 13", "type": "synonym", "evidence": [ { "id": "A0A4X1WBW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBW5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5", "locus": {} } ], "crossref": [ { "id": "A0A4X1WBW5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1WBP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBW5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASQPPPPPKPWETRRIPGAGPGPGPGPTFQLWFVAAQRGICPAPLIGNKVS", "length": 52, "header": "tr|A0A4X1WBW5-1|A0A4X1WBW5_PIG Isoform 1 of Peroxisomal biosis factor 13 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WBW5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WBP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBP9/entry", "sequence": { "sequence": "MASQPPPPPKPWETRRIPGAGPGPGPGPTFQVDFGS", "length": 36, "header": "tr|A0A4X1WBP9-1|A0A4X1WBW5_PIG Computationally mapped isoform of Peroxisomal biosis factor 13 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WBW5-1" }, "locus": { "chromosome": "3", "start_pos": 80791028, "end_pos": 80790567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088535.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088535.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064388.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064388.1" } ] } }, { "isoform_ac": "A0A4X1WBW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBW5/entry", "sequence": { "sequence": "MASQPPPPPKPWETRRIPGAGPGPGPGPTFQLWFVAAQRGICPAPLIGNKVS", "length": 52, "header": "tr|A0A4X1WBW5-1|A0A4X1WBW5_PIG Isoform 1 of Peroxisomal biosis factor 13 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WBW5-1" }, "locus": { "chromosome": "3", "start_pos": 80791028, "end_pos": 80790512, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085938.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085938.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071137.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071137.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBQ6-1", "uniprot_ac": "A0A4X1WBQ6", "uniprot_id": "A0A4X1WBQ6_PIG", "mass": { "chemical_mass": 7152.0, "monoisotopic_mass": 7152.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Pseudouridine synthase 10", "type": "recommended", "evidence": [ { "id": "A0A4X1WBQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6", "locus": {} } ], "crossref": [ { "id": "A0A4X1WBQ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "DVHAPYK", "url": "https://omabrowser.org/oma/group/DVHAPYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPLTEENKHVAQLLLSTGTCARCIFRFCGVDVHAPYKLPYKMKSLRHREVKQPAQSYTAIK", "length": 62, "header": "tr|A0A4X1WBQ6-1|A0A4X1WBQ6_PIG Isoform 1 of Pseudouridine synthase 10 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WBQ6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WBQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6/entry", "sequence": { "sequence": "MFPLTEENKHVAQLLLSTGTCARCIFRFCGVDVHAPYKLPYKMKSLRHREVKQPAQSYTAIK", "length": 62, "header": "tr|A0A4X1WBQ6-1|A0A4X1WBQ6_PIG Isoform 1 of Pseudouridine synthase 10 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WBQ6-1" }, "locus": { "chromosome": "3", "start_pos": 80796182, "end_pos": 80795093, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095482.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095482.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075758.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VZF2-1", "uniprot_ac": "A0A4X1VZF2", "uniprot_id": "A0A4X1VZF2_PIG", "mass": { "chemical_mass": 35314.0, "monoisotopic_mass": 35314.0 }, "refseq": { "ac": "XP_001928089", "name": "solute carrier family 25 member 44", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928089" }, "gene_names": [ { "name": "SLC25A44", "type": "recommended", "evidence": [ { "id": "A0A4X1VZF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ] }, { "name": "SLC25A44", "type": "synonym", "evidence": [ { "id": "XP_001928089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928089" } ] } ], "protein_names": [ { "name": "Solute carrier family 25 member 44", "type": "recommended", "evidence": [ { "id": "A0A4X1VZF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 25 member 44", "type": "synonym", "evidence": [ { "id": "XP_001928089", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928089" } ] } ], "function": [ { "annotation": "Mitochondrial solute transporter which transports branched-chain amino acid (BCAA; valine, leucine and isoleucine) into mitochondria in brown adipose tissue (BAT). BAT is involved in BCAA catabolism and actively utilizes BCAA in the mitochondria for thermogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0VNW0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VNW0#function" }, { "database": "UniProtKB", "id": "ARBA00058460", "url": "https://www.uniprot.org/uniprotkb/ARBA00058460#function" }, { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC25A44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2", "locus": { "chromosome": "4", "start_pos": 93837009, "end_pos": 93857158, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006494", "url": "https://www.ensembl.org/id/ENSSSCG00000006494" } ] } } ], "crossref": [ { "id": "100155112", "url": "https://www.ncbi.nlm.nih.gov/gene/100155112", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155112", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155112", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPSGILM", "url": "https://omabrowser.org/oma/group/GPSGILM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VZF2", "url": "https://www.orthodb.org/?gene=A0A4X1VZF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46314", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46314", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46314:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46314:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928089", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928089", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29703", "url": "https://www.rhea-db.org/rhea/29703", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "73011", "url": "https://www.rhea-db.org/rhea/73011", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0VNW0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VNW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0VNW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VNW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGVAGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSSLCPKECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 314, "header": "tr|A0A4X1VZF2-1|A0A4X1VZF2_PIG Isoform 1 of Solute carrier family 25 member 44 OS=Sus scrofa OX=9823 GN=SLC25A44 PE=3 SV=1 CANONICAL=A0A4X1VZF2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VZF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2/entry", "sequence": { "sequence": "MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGVAGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSSLCPKECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 314, "header": "tr|A0A4X1VZF2-1|A0A4X1VZF2_PIG Isoform 1 of Solute carrier family 25 member 44 OS=Sus scrofa OX=9823 GN=SLC25A44 PE=3 SV=1 CANONICAL=A0A4X1VZF2-1" }, "locus": { "chromosome": "4", "start_pos": 93850582, "end_pos": 93839493, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042897.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042897.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042058.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042058.3" } ] } }, { "isoform_ac": "A0A8D0VNW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VNW0/entry", "sequence": { "sequence": "MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGVAGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSSLCPKECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHWTMDRTSWNF", "length": 323, "header": "tr|A0A8D0VNW0-1|A0A8D0VNW0_PIG Computationally mapped isoform of Solute carrier family 25 member 44 OS=Sus scrofa OX=9823 GN=SLC25A44 PE=3 SV=1 CANONICAL=A0A4X1VZF2-1" }, "locus": { "chromosome": "4", "start_pos": 93850582, "end_pos": 93837220, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089119.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089119.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062466.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062466.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155112", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155112", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0U1RRT2-1", "protein_name": "Solute carrier family 25 member 44", "gene_name": "Slc25a44", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARGMPEDPELAVQEPDRRSPGNMEGKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFVKILRADGVTGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNLEGQGLIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSRLCPQECPHIVFQAISGPLAAATASVLTNPMDVIRTRVQVEGKSSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 337 }, "evidence": [ { "id": "A0A4X1VZF2", "url": "https://omabrowser.org/oma/group/A0A4X1VZF2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HG93-1", "protein_name": "Solute carrier family 25 member 44", "gene_name": "Slc25a44", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARGIPKDPELAVQEPDRRSLGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGRSLYHGTFDAFVKILRAEGVTGLYRGFLVNTFTLISGQCYVTTYELTRKFVSDYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNLEGQGLIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSHLCPQECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKSSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 337 }, "evidence": [ { "id": "A0A4X1VZF2", "url": "https://omabrowser.org/oma/group/A0A4X1VZF2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BGF9-1", "protein_name": "Solute carrier family 25 member 44", "gene_name": "Slc25a44", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFVKILRADGVAGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQGVIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSRLCPQECPHIVFQAISGPLAAATASILTNPMDVIRTRVQVEGKSSIVLTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 314 }, "evidence": [ { "id": "A0A4X1VZF2", "url": "https://omabrowser.org/oma/group/A0A4X1VZF2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96H78-1", "protein_name": "Solute carrier family 25 member 44", "gene_name": "SLC25A44", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSYLCPKECPHIVFQAVSGPLAAATASILTNPMDVIRTRVQVEGKNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW", "length": 314 }, "evidence": [ { "id": "A0A4X1VZF2", "url": "https://omabrowser.org/oma/group/A0A4X1VZF2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "branched-chain amino acid catabolic process", "id": "GO:0009083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009083", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" }, { "name": "amino acid transport", "id": "GO:0006865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006865", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" }, { "name": "branched-chain amino acid transport", "id": "GO:0015803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" }, { "name": "regulation of cold-induced thermogenesis", "id": "GO:0120161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "branched-chain amino acid transmembrane transporter activity", "id": "GO:0015658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015658", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29703", "name": "", "equation": "L-valine(in) = L-valine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29703", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29703" } ] }, { "id": "73011", "name": "", "equation": "L-leucine(in) = L-leucine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "73011", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/73011" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBK0-1", "uniprot_ac": "A0A4X1WBK0", "uniprot_id": "A0A4X1WBK0_PIG", "mass": { "chemical_mass": 59678.0, "monoisotopic_mass": 59678.0 }, "refseq": { "ac": "XP_003355451", "name": "aladin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355451" }, "gene_names": [ { "name": "AAAS", "type": "recommended", "evidence": [ { "id": "A0A4X1WBK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ] }, { "name": "AAAS", "type": "synonym", "evidence": [ { "id": "XP_003355451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355451" } ] } ], "protein_names": [ { "name": "Aladin", "type": "recommended", "evidence": [ { "id": "A0A4X1WBK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0/entry#names_and_taxonomy" } ] }, { "name": "Adracalin", "type": "synonym", "evidence": [ { "id": "A0A4X1WBK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0/entry#names_and_taxonomy" } ] }, { "name": "aladin", "type": "synonym", "evidence": [ { "id": "XP_003355451", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355451" } ] } ], "function": [ { "annotation": "Plays a role in the normal development of the peripheral and central nervous system. Required for the correct localization of aurora kinase AURKA and the microtubule minus end-binding protein NUMA1 as well as a subset of AURKA targets which ensures proper spindle formation and timely chromosome alignment.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1LBP4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LBP4#function" }, { "database": "UniProtKB", "id": "ARBA00053972", "url": "https://www.uniprot.org/uniprotkb/ARBA00053972#function" }, { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0#function" }, { "database": "UniProtKB", "id": "A0A4X1WBK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK4#function" }, { "database": "UniProtKB", "id": "A0A8W4FEB5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEB5#function" }, { "database": "UniProtKB", "id": "A0A5G2QP53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP53#function" }, { "database": "UniProtKB", "id": "A0A8D0S674", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S674#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AAAS", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0", "locus": { "chromosome": "5", "start_pos": 18526076, "end_pos": 18537830, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000268", "url": "https://www.ensembl.org/id/ENSSSCG00000000268" } ] } } ], "crossref": [ { "id": "A0A4X1WBK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000268", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000268", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154333", "url": "https://www.ncbi.nlm.nih.gov/gene/100154333", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154333", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154333", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FQPLYKD", "url": "https://omabrowser.org/oma/group/FQPLYKD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WBK0", "url": "https://www.orthodb.org/?gene=A0A4X1WBK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14494", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14494", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14494:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14494:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25460", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25460", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159227", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159227", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855170", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855170", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855196", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855196", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-191859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3108214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3232142", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3232142", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3301854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3301854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371453", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4085377", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085377", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4551638", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551638", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4570464", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4570464", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4615885", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4615885", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355451", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355451", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WB98", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WB98-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S674", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S674", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S674-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S674-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LBP4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LBP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LBP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LBP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEB5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGVFGVLNEIANSEEEVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 546, "header": "tr|A0A4X1WBK0-1|A0A4X1WBK0_PIG Isoform 1 of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WB98-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB98/entry", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGVFGVLNEIANSEEEVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNCTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 513, "header": "tr|A0A4X1WB98-1|A0A4X1WBK0_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18537696, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085451.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085451.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073596.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073596.1" } ] } }, { "isoform_ac": "A0A4X1WBK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0/entry", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGVFGVLNEIANSEEEVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 546, "header": "tr|A0A4X1WBK0-1|A0A4X1WBK0_PIG Isoform 1 of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18537696, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000287.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000287.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000283.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000283.3" } ] } }, { "isoform_ac": "A0A4X1WBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK4/entry", "sequence": { "sequence": "MKLQTRRRRLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 422, "header": "tr|A0A4X1WBK4-1|A0A4X1WBK4_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18533267, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087438.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087438.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064753.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064753.1" } ] } }, { "isoform_ac": "A0A5G2QP53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP53/entry", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLNLTKDPLKTPGRLDHDMAPGLLGHGLCLLNPAVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLPSVPGPIFDLNLGQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 524, "header": "tr|A0A5G2QP53-1|A0A5G2QP53_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18537696, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068408.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068408.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066480.1" } ] } }, { "isoform_ac": "A0A8D0S674-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S674/entry", "sequence": { "sequence": "VRPRIKPASSWWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGVFGVLNEIANSEEEVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 516, "header": "tr|A0A8D0S674-1|A0A8D0S674_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18536963, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089311.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089311.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059983.1" } ] } }, { "isoform_ac": "A0A8D1LBP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LBP4/entry", "sequence": { "sequence": "GCKRTSEKLETVSGRTRKAQPQPGEFFRCAFPGKEKEEKLTFIEILLCKWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGVFGVLNEIANSEEEVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 554, "header": "tr|A0A8D1LBP4-1|A0A8D1LBP4_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18537326, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069746.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069746.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064695.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064695.1" } ] } }, { "isoform_ac": "A0A8W4FEB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEB5/entry", "sequence": { "sequence": "VRPRIKPASSWWINLPVLNLTKDPLKTPGRLDHGTRTAFIHHREQILEEMSCLLNPAVFEWVKTASSWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLPSVPGPIFDLNLGQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSETTVQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRTQEPPAGAGGSIHDLPLFTELSPVSAPWDPLPGPPPARAHSPHSHFQ", "length": 501, "header": "tr|A0A8W4FEB5-1|A0A8W4FEB5_PIG Computationally mapped isoform of Aladin OS=Sus scrofa OX=9823 GN=AAAS PE=1 SV=1 CANONICAL=A0A4X1WBK0-1" }, "locus": { "chromosome": "5", "start_pos": 18536963, "end_pos": 18526327, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094900.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094900.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077201.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077201.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WB98", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154333", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154333", "resource": "KEGG Pathway" }, { "id": "R-SSC-159227", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159227", "resource": "Reactome", "description": "Transport of the SLBP independent Mature mRNA" }, { "id": "R-SSC-159230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "resource": "Reactome", "description": "Transport of the SLBP Dependant Mature mRNA" }, { "id": "R-SSC-159231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "resource": "Reactome", "description": "Transport of Mature mRNA Derived from an Intronless Transcript" }, { "id": "R-SSC-159236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "resource": "Reactome", "description": "Transport of Mature mRNA derived from an Intron-Containing Transcript" }, { "id": "R-SSC-1855170", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855170", "resource": "Reactome", "description": "IPs transport between nucleus and cytosol" }, { "id": "R-SSC-1855196", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855196", "resource": "Reactome", "description": "IP3 and IP4 transport between cytosol and nucleus" }, { "id": "R-SSC-1855229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855229", "resource": "Reactome", "description": "IP6 and IP7 transport between cytosol and nucleus" }, { "id": "R-SSC-191859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "resource": "Reactome", "description": "snRNP Assembly" }, { "id": "R-SSC-3108214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "resource": "Reactome", "description": "SUMOylation of DNA damage response and repair proteins" }, { "id": "R-SSC-3232142", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3232142", "resource": "Reactome", "description": "SUMOylation of ubiquitinylation proteins" }, { "id": "R-SSC-3301854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3301854", "resource": "Reactome", "description": "Nuclear Pore Complex (NPC) Disassembly" }, { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" }, { "id": "R-SSC-4085377", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085377", "resource": "Reactome", "description": "SUMOylation of SUMOylation proteins" }, { "id": "R-SSC-4551638", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551638", "resource": "Reactome", "description": "SUMOylation of chromatin organization proteins" }, { "id": "R-SSC-4570464", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4570464", "resource": "Reactome", "description": "SUMOylation of RNA binding proteins" }, { "id": "R-SSC-4615885", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4615885", "resource": "Reactome", "description": "SUMOylation of DNA replication proteins" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZNS8-1", "protein_name": "Aladin", "gene_name": "Aaas", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWINLPVLHLTKDPLKAPGRLDHGTRAAFIHHREQVWKRCINVWHDVGLFGVLNEIANSEEEVFEWVKTASSWALALCGRASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEARMWTCEGWPTLSGRCQTGCWSPDGKRLLFTVLGEALIYSLSFPEPCGTEKGHVGGAKSATIVADLSETTIQTPDGEERLGGEAHAMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNSPVFELLPCGVIQGEPGAQAQLVSFHPAFNKGALLSVCWSTGRITHIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSVHEVPLFTETSPTSAPWDPLPGLPSAQPHSPHSHL", "length": 546 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HV48-1", "protein_name": "Aladin", "gene_name": "Aaas", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWINLPVLHLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINVWRDVGLFGVLNEIANSEEEVFEWVKTASSWALTLCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNASSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGRLLSASPVDAAILVWDVSTEICVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWETQMWTCERWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPEGCGTEKGHVGGAKSATIVADLSETTIQTPDGEERLGGEVHSMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNTPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRIAHIPLYFVNAQFPRFSPVFGRAQEPPAGGGGSIHEVPLFTETSPTSAPWDPLPGLQPAQPHSPHSHL", "length": 546 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P58742-1", "protein_name": "Aladin", "gene_name": "Aaas", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWINLPVLHLTKDPLKAPGRLDHGTRTAFIHHREQVWKRCINVWHDVGLFGVLNEIANSEEEVFEWVKTACSWALALCGRASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQVQDGNPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLITFHPSFNKGALLSVCWSTGRITHIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHEVPLFTETSPTSAPWDPLPGQSSAQPHSPHSHL", "length": 546 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8GWR1-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGANQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMALVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIWDVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSVTGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAWDASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFKQGPLLSVCWSTGFCCTYPLIFRSHVLP", "length": 447 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NRG9-1", "protein_name": "Aladin", "gene_name": "AAAS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGRLDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRWASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPRVQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIAHIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL", "length": 546 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W351-1", "protein_name": "Aladin", "gene_name": "Aladin", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRYYGGQSFVSVNEGVLKRIARSFFNGGFWKTLEEARSPETREQAPLIAQAGDLIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFFCLAVAGVDDVVRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIGCRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWNKDGTQLATASIGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVWNCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQSLLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFKATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSVLTIAWSSGRIQYYAFD", "length": 466 }, "evidence": [ { "id": "A0A4X1WBK0", "url": "https://omabrowser.org/oma/group/A0A4X1WBK0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "mRNA transport", "id": "GO:0051028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051028", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "nucleocytoplasmic transport", "id": "GO:0006913", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006913", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "mitotic spindle assembly", "id": "GO:0090307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090307", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" }, { "name": "microtubule bundle formation", "id": "GO:0001578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001578", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WBK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBK0" }, { "id": "PF25460", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25460" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aladin seven-bladed propeller", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 484, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 181, "end_pos": 183 }, { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBZ8-1", "uniprot_ac": "A0A4X1WBZ8", "uniprot_id": "A0A4X1WBZ8_PIG", "mass": { "chemical_mass": 81251.0, "monoisotopic_mass": 81251.0 }, "refseq": { "ac": "XP_013851607", "name": "translation initiation factor IF-2, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851607" }, "gene_names": [ { "name": "MTIF2", "type": "recommended", "evidence": [ { "id": "A0A4X1WBZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ] }, { "name": "MTIF2", "type": "synonym", "evidence": [ { "id": "XP_013851607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851607" } ] } ], "protein_names": [ { "name": "Translation initiation factor IF-2, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A4X1WBZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8/entry#names_and_taxonomy" } ] }, { "name": "translation initiation factor IF-2, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013851607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851607" } ] } ], "function": [ { "annotation": "One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8#function" }, { "database": "UniProtKB", "id": "ARBA00025162", "url": "https://www.uniprot.org/uniprotkb/ARBA00025162#function" }, { "database": "UniProtKB", "id": "A0A4X1WC68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WC68#function" }, { "database": "UniProtKB", "id": "A0A8D1XJP0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XJP0#function" }, { "database": "UniProtKB", "id": "A0A8W4FGB0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGB0#function" }, { "database": "UniProtKB", "id": "A0A8W4FLZ9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLZ9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTIF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8", "locus": { "chromosome": "3", "start_pos": 85989111, "end_pos": 85947635, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008404", "url": "https://www.ensembl.org/id/ENSSSCG00000008404" } ] } } ], "crossref": [ { "id": "A0A4X1WBZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03692", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03692", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03702", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03702", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627723", "url": "https://www.ncbi.nlm.nih.gov/gene/100627723", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627723", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627723", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TIVCYQI", "url": "https://omabrowser.org/oma/group/TIVCYQI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WBZ8", "url": "https://www.orthodb.org/?gene=A0A4X1WBZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43381:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43381:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11987", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11987", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22042", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22042", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013851607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851607", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WC68", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WC68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WC68-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WC68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XJP0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XJP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XJP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XJP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGB0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLZ9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGVIYGFNVNASNVIQQSAAKKGVKIKLHKIIYRLIEDVQEELSSRLPCAVEEHIIGEASILATFSITEGKKKIPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLISLKHHKDDISVIKTGMDCGLSLDEEKIEFKVGDGIVCYEEKEVPAKTSWDPGF", "length": 727, "header": "tr|A0A4X1WBZ8-1|A0A4X1WBZ8_PIG Isoform 1 of Translation initiation factor IF-2, mitochondrial OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WBZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8/entry", "sequence": { "sequence": "MNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGVIYGFNVNASNVIQQSAAKKGVKIKLHKIIYRLIEDVQEELSSRLPCAVEEHIIGEASILATFSITEGKKKIPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLISLKHHKDDISVIKTGMDCGLSLDEEKIEFKVGDGIVCYEEKEVPAKTSWDPGF", "length": 727, "header": "tr|A0A4X1WBZ8-1|A0A4X1WBZ8_PIG Isoform 1 of Translation initiation factor IF-2, mitochondrial OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "locus": { "chromosome": "3", "start_pos": 85988597, "end_pos": 85958491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009201.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009201.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008968.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008968.2" } ] } }, { "isoform_ac": "A0A4X1WC68-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WC68/entry", "sequence": { "sequence": "MNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGEASILATFSITEGKKKIPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLISLKHHKDDISVIKTGMDCGLSLDEEKIEFKVGDGIVCYEEKEVPAKTSWDPGF", "length": 672, "header": "tr|A0A4X1WC68-1|A0A4X1WC68_PIG Computationally mapped isoform of Translation initiation factor IF-2, mitochondrial OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "locus": { "chromosome": "3", "start_pos": 85988597, "end_pos": 85958491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064578.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064578.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057015.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057015.2" } ] } }, { "isoform_ac": "A0A8D1XJP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XJP0/entry", "sequence": { "sequence": "MTTTGKAHSRTEKEWSGSKPPPILRRNMNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGVIYGFNVNASNVIQQSAAKKGVKIKLHKIIYRLIEDVQEELSSRLPCAVEEHIIGEASILATFSITEGKKKIPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLISLKHHKDDISVIKTGMDCGLSLDEEKIEFKVGDGIVCYEEKEVPAKTSWDPGF", "length": 754, "header": "tr|A0A8D1XJP0-1|A0A8D1XJP0_PIG Computationally mapped isoform of Translation initiation factor IF-2, mitochondrial OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "locus": { "chromosome": "3", "start_pos": 85988597, "end_pos": 85948948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058866.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058866.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059046.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059046.2" } ] } }, { "isoform_ac": "A0A8W4FGB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGB0/entry", "sequence": { "sequence": "MNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGVIYGFNVNASNVIQQSAAKKGVKIKLHKIIYRLIEDVQEELSSRLPCAVEEHIIGNCSLNIPFKHSYLICCKKHLKAKFKGNIFHCLNMFTVPTYILCSRKNYYG", "length": 674, "header": "tr|A0A8W4FGB0-1|A0A8W4FGB0_PIG Computationally mapped isoform of Mitochondrial translational initiation factor 2 OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "locus": { "chromosome": "3", "start_pos": 85983828, "end_pos": 85958491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100365.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100365.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078469.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078469.1" } ] } }, { "isoform_ac": "A0A8W4FLZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLZ9/entry", "sequence": { "sequence": "FHMLRNMNQKILKLENLLRFHTVCRQLHSLCQRRMLAQWRHVFSSAYPAWTAQLYAHSGQTDVLIRAALSQQRLLATKKEERSQKSQLSSRKSKKEVEVWIGMTVEELARAMEKDIDFIYESLMNTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIIILVVAADDGVMKQTVESIQHAKDAQVPIVLAINKCDKAEADPEKAKKELLAYDVVCEDYGGDVQAVHVSALTGDNMMALTEATVALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTINEACPSMPVGIIGWRDLPSAGDEILEVESEARAREVVDWRKYEQEQEKSKEDLKLIEEKRKEHQEAHQKAREKYGTLSWKERSFIKYKEKKQQQPLKLKEKVERDSDVLPIIIKGDVDGSLEAILNIMDTYDASHECELELVHFGVGDISENDVNLAETFNGVIYGFNVNASNVIQQSAAKKGVKIKLHKIIYRLIEDVQEELSSRLPCAVEEHIIGEASILATFSITEGKKKIPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLISLKHHKDDISVIKTGMDCGLSLDEEKIEFKVGDGIVCYEEKEVPAKTSWDPGF", "length": 733, "header": "tr|A0A8W4FLZ9-1|A0A8W4FLZ9_PIG Computationally mapped isoform of Translation initiation factor IF-2, mitochondrial OS=Sus scrofa OX=9823 GN=MTIF2 PE=1 SV=1 CANONICAL=A0A4X1WBZ8-1" }, "locus": { "chromosome": "3", "start_pos": 85988597, "end_pos": 85958139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092324.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092324.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080364.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080364.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627723", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627723", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HJS7-1", "protein_name": "Translation initiation factor IF-2, mitochondrial", "gene_name": "Mtif2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNQKLLKLENLLRFHTICRQLHSLSQRRLFAWQKHGFSPAYPLWTEQLCAQPRQTNLFVGASLCQHRLFVTNKEKRPSRSQSSSIKPKRNVEVWVGMTVEELARAMAKDIDYIYEALLNTAVDIDSLEANSHLDEVWIKEVIKKAGMKLRWTKLKQEKVRENKDAVRRPQADPALLTPRFPVVTIMGHVDHGKTTLLDKLRKTQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAQEAQVPIVLAINKCDKADADPERVKKELLAYDVVCEDYGGDVQAVHVSALTGDNLTALAEATIALSEMLELKADPTGPVEGTVIEAFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGKTLNEAYPSMPVGIIGWRDLPSAGDEILEVESEPRAREVVEWRKIEQKEEKGKDDLKIIEEQRKEHQEAHRKAREKYGSLHWRKRSYMKYLERKEQRPLKPKEKAEKDSNVLSIIIKGDVDGSVEAILNLLDTYDASHECELELVHFGLGDISENDVNFAETFDGVIYGFNVDAGKAIQQSAAQKGVKIKLHKIIYHLIEDLQEELSSRLPHRLEEFPIGEACILATFSVTEGKRKVPVAGCRVQKGQLEKQKKFKLIRNGHVIWKGSLTSLKHHKDDVSVIKTGMDCGLILDEEKVEFKVGDEVVCYEENEVPAKTSWDPGF", "length": 727 }, "evidence": [ { "id": "A0A4X1WBZ8", "url": "https://omabrowser.org/oma/group/A0A4X1WBZ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P46198-1", "protein_name": "Translation initiation factor IF-2, mitochondrial", "gene_name": "MTIF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNRKILKLENLLRFHTICRQLHSLCQRRMLAQWRHMFSSAYAVHTAQLYTRPWQTDALLRAALSQRRLLVTKKEKRSQKSPLPSTKSKKEVEVWLGMTVEELARAMEKDIDCVYESLMNTAIDIDSLETHSRLDEVWIKEVIKKSGMKLKWSKLKQDKVRENKDAVKRPQADPALLIPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVGIIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICYEEKEVPAKTSWDPGF", "length": 727 }, "evidence": [ { "id": "A0A4X1WBZ8", "url": "https://omabrowser.org/oma/group/A0A4X1WBZ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46199-1", "protein_name": "Translation initiation factor IF-2, mitochondrial", "gene_name": "MTIF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNQKLLKLENLLRFHTIYRQLHSLCQRRALRQWRHGFSSAYPVWTAQLCAWPWPTDVLTGAALSQYRLLVTKKEEGPWKSQLSSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEALLNTDIDIDSLEADSHLDEVWIKEVITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRLMFDENGKTIDEAYPSMPVGITGWRDLPSAGEEILEVESEPRAREVVDWRKYEQEQEKGQEDLKIIEEKRKEHKEAHQKAREKYGHLLWKKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDASHECELELVHFGVGDVSANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIYRLVEDLQEELSSRLPCAVEEHPVGEASILATFSVTEGKKKVPVAGCRVQKGQLEKQKKFKLTRNGHVIWKGSLTSLKHHKDDISIVKTGMDCGLSLDEDNMEFQVGDRIVCYEEKQIQAKTSWDPGF", "length": 727 }, "evidence": [ { "id": "A0A4X1WBZ8", "url": "https://omabrowser.org/oma/group/A0A4X1WBZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91YJ5-1", "protein_name": "Translation initiation factor IF-2, mitochondrial", "gene_name": "Mtif2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNQKLLKLENLLRFHTICRQVHSPSQRRLLAWCRHGFAPASSVWRDLLGARSWQTDMLIGSALHQHRLLVTKKEKRPPRSQLSPVKTKKEVEVWVGMTVEDLASAMAKDIDCVYEALLNTAIDVDSLEANSHLDEVWIKEVIKKAGMKLKWSKLKQERIRENKDAVRRPGTDPALLKPRSPVVTVMGHVDHGKTTLLDKLRETQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAEVPIILAINKCDKTDADPEKVKKELLAYDVVCEEYGGDVQAVHVSALTGDNLMALAEATIALAEILELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLIFDENGKILNEAYPSMPVGIIGWRDLPSAGDEILEVESEPRAREVIEWRKSEQKEEKGKDDLKIMEEKRREHQEAHRKAREKYGSLHWKERSYIKFLERKQQRPLKPKEKVERQSNVLPIIIKGDVDGSVEAILNLLDTYDASHECELELVHFGLGDISENDVTFAETFDGVIYGFNVEAGSAIQQSAAQKGVKIKLHKIIYHLIEDLQEELSSRLPHTLEEYPIGEASILATFTVTEGKKKIPVAGCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEKVEFKPGDQVICYEENKVPTKTSWDPGF", "length": 727 }, "evidence": [ { "id": "A0A4X1WBZ8", "url": "https://omabrowser.org/oma/group/A0A4X1WBZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VAV2-1", "protein_name": "Mitochondrial translation initiation factor 2", "gene_name": "mIF2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLRIINISRLGNTLHFSRAVTQWQLPLAFQREFHVSAARLKRRKTAEEKKSPRIIEYSPKKFQTAGGGASDIWRHMTVAQLAKELERSLDDVQEAMLYVKGADNIEPAFKLADLKIIQEIAKKLGAKTRVVATPEETNADEQKERDVAPRPPAAPELLQPRPPVVTVMGHVDHGKTTLLDSLRGADVAAGEAGGITQHIGAFTVTLENGERVTFLDTPGHAAFSAMRARGAVATDIIVLVVAAEDGVMAQTREVIQLAKEAQVPIIVALNKIDKPEANIEKSKRELAQMGLALEEHGGDVQVIPISALKGTNLELLAEAVSTQATLMGLKADPTGLVEGIVVESKTDPRRGKLSTAIVSRGTLRKGSVLLSGLAHAKVRGLFDHNGQPLSEAPPGTPVEILGWRELPLAGDLILEVETEKKAHAVLKYREHESQQEKIESSSDEIRKKEEEHQAKYRAEREARRLAGRFRMRGGQRVKQVDENEGKPRVSVIIKGDVHGSVEAILDVLETYNSNESCRLDIVHYGVGNVTEGDLELAKAFHAIIYAFAVETPQLKAAKEVNIRSYNIIYRLIDDLKEQLSSKLPPVEVEEVLGEANVLQNFLINEGRKEVPVAGCRCTKGVLKKAQKFRLLRDGEVVYDGPLESMRHLKNEVDTIKKDVECGLRFRDTKVLPQAGDILQCYTTKMEAQQTDWDPGF", "length": 696 }, "evidence": [ { "id": "A0A4X1WBZ8", "url": "https://omabrowser.org/oma/group/A0A4X1WBZ8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" }, { "name": "intracellular organelle lumen", "id": "GO:0070013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial translational initiation", "id": "GO:0070124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070124", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" }, { "name": "formation of translation preinitiation complex", "id": "GO:0001731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001731", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBZ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 577, "end_pos": 579, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WBZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBZ8" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 348, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 577, "end_pos": 579 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VEG1-1", "uniprot_ac": "A0A4X1VEG1", "uniprot_id": "A0A4X1VEG1_PIG", "mass": { "chemical_mass": 65542.0, "monoisotopic_mass": 65542.0 }, "refseq": {}, "gene_names": [ { "name": "MYNN", "type": "recommended", "evidence": [ { "id": "A0A4X1VEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ] } ], "protein_names": [ { "name": "Myoneurin", "type": "recommended", "evidence": [ { "id": "A0A4X1VEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYNN", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1", "locus": { "chromosome": "13", "start_pos": 108457226, "end_pos": 108435324, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026829", "url": "https://www.ensembl.org/id/ENSSSCG00000026829" } ] } } ], "crossref": [ { "id": "A0A4X1VEG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VEG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026829", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026829", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18217", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18217", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625538", "url": "https://www.ncbi.nlm.nih.gov/gene/100625538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625538", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625538", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RPICNIC", "url": "https://omabrowser.org/oma/group/RPICNIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R9J4", "url": "https://www.orthodb.org/?gene=A0A5G2R9J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LGC1", "url": "https://www.orthodb.org/?gene=I3LGC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9J4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGC1", "url": "https://www.uniprot.org/uniprotkb/I3LGC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGC1-1", "url": "https://www.uniprot.org/uniprotkb/I3LGC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNSREKSEVSTDLVQANPKQGALAKKSSQTKKKKKAFNSQKTRQNKTVQYPSDILENTSVELFLDANKLSTPIIEQVVQRNNSELELTSVVENTFPAQDIVQTVTVKRKRGKSQPNCALKEHSMSNIATVKNSYELESSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGTDKILDSSIEDHPLSEKESIQKSPLSETLDVKPSDMALPLTLPLGTEDHHMLLPVTDNQSPTSDALLRSTVNGYSEPQLIFLQQLY", "length": 580, "header": "tr|A0A4X1VEG1-1|A0A4X1VEG1_PIG Isoform 1 of Myoneurin OS=Sus scrofa OX=9823 GN=MYNN PE=4 SV=1 CANONICAL=A0A4X1VEG1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1/entry", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNSREKSEVSTDLVQANPKQGALAKKSSQTKKKKKAFNSQKTRQNKTVQYPSDILENTSVELFLDANKLSTPIIEQVVQRNNSELELTSVVENTFPAQDIVQTVTVKRKRGKSQPNCALKEHSMSNIATVKNSYELESSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGTDKILDSSIEDHPLSEKESIQKSPLSETLDVKPSDMALPLTLPLGTEDHHMLLPVTDNQSPTSDALLRSTVNGYSEPQLIFLQQLY", "length": 580, "header": "tr|A0A4X1VEG1-1|A0A4X1VEG1_PIG Isoform 1 of Myoneurin OS=Sus scrofa OX=9823 GN=MYNN PE=4 SV=1 CANONICAL=A0A4X1VEG1-1" }, "locus": { "chromosome": "13", "start_pos": 108449743, "end_pos": 108436671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029120.3", "url": "https://www.ensembl.org/id/ENSSSCT00000029120.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019370.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019370.2" } ] } }, { "isoform_ac": "A0A5G2R9J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9J4/entry", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNSREKSEVSTDLVQANPKQGALAKKSSQTKKKKKAFNSQKTRQNKTVQYPSDILENTSVELFLDANKLSTPIIEQVVQRNNSELELTSVVENTFPAQDIVQTVTVKRKRGKSQPNCALKEHSMSNIATVKNSYELESSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKILDSSIEDHPLSEKESIQKSPLSETLDVKPSDMALPLTLPLGTEDHHMLLPVTDNQSPTSDALLRSTVNGYSEPQLIFLQQLY", "length": 581, "header": "tr|A0A5G2R9J4-1|A0A5G2R9J4_PIG Computationally mapped isoform of Myoneurin OS=Sus scrofa OX=9823 GN=MYNN PE=3 SV=1 CANONICAL=A0A4X1VEG1-1" }, "locus": { "chromosome": "13", "start_pos": 108449743, "end_pos": 108436671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088000.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088000.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073736.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073736.1" } ] } }, { "isoform_ac": "I3LGC1-1", "url": "https://www.uniprot.org/uniprotkb/I3LGC1/entry", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNSREKSEVSTDLVQANPKQGALAKKSSQTKKKKKAFNSQKTRQNKTVQYPSDILENTSVELFLDANKLSTPIIEQVVQRNNSELELTSVVENTFPAQDIVQTVTVKRKRGKSQPNCALKEHSMSNIATVKNSYELESSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKILDSSIEDHPLSEKESIQKSPLSETLDVKPSDMALPLTLPLGTEDHHMLLPVTDNQSPTSDALLRSTVNGYSEPQLIFLQQLY", "length": 609, "header": "tr|I3LGC1-1|I3LGC1_PIG Computationally mapped isoform of Myoneurin OS=Sus scrofa OX=9823 GN=MYNN PE=3 SV=1 CANONICAL=A0A4X1VEG1-1" }, "locus": { "chromosome": "13", "start_pos": 108449743, "end_pos": 108436671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000032001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000023114.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625538", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KAA6-1", "protein_name": "Myoneurin", "gene_name": "Mynn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIASPSSTEISSITGNIELNQQTCLLTLRDYNNREKSEVSTDSVQANPKQRVLTKKSSQSKKKKKAFNSQNPGRAKALQHHSGVSESASVELFLDANKLSPPAVEQVIQGNDTSELELTSVVENTFPAQDIVQTVTVKRKRRKSQSHCALKEHSMSNIASVKSPYELENAGEELDPRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKNADCSVDDHAVSEQDSIQRSPLSETLDVKPSDMTLPLALPLGTEDHHMLLPVTDSQSPTSDTLLRSTVNGYSEPQLIFLQQLY", "length": 610 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8C2LUK8-1", "protein_name": "Myoneurin", "gene_name": "Mynn", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIASPSSTEISSITGNIELNQQTCLLTLRDYNNREKSDVSTDLVQANPKQRALAKKSSQSKKKKKAFNSQKPGQNKSVQYPSDALESTSVELFLDTNKLSPPVVEQVIQGNDNSELELTSVAENTFPAQDIVQTVTVKRKRGKSQSHCALKEHSMSNIASVKSPYELETVGEELDPRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKTPDCSVDDHALSEQDPTQRSPLSETLDVKPSDMTLPLALPLGTEEHMLLPVTENQSPTSDTLLRSAVNGYSEPQLIFLQQLY", "length": 609 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YRJ1-1", "protein_name": "Myoneurin", "gene_name": "MYNN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTVVIGECQFKAHRNVLASFSEFFGAFYRDATDSTVVLDQTQVKADGFQKLLEFIYTGNLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTETSSITGNVEMNQQTCLLTLRDYNDREKADIPPAELVQPQAKKSALEKKSAQTKKRKKNFSSPKSVQNKSIQYQNDVTENTSIEMFLDANKLAAQITEQAAQGGDSSELQLAAVVESETLAAQDILVQTIAAKQKRGKPQQSCALKEHCMSNIASEKNAYQLESSGEELDQKYSKAKPVCNTCGKVFSEASSLRRHMRIHKGVKPYVCQLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHTGSETPPDCNTLDNSFNEQESLQSQKSPLSESVDVKPSEMSLPLPLPIGTEDHQMLLPVAGSQSPSSETLLRSAVTGYSEPQFIFLQQLY", "length": 615 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3B7N9-1", "protein_name": "Myoneurin", "gene_name": "MYNN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNSREKSEVSTDLVQANPKQGALAKKSSQTKKKKKAFNSQKTGQNKTVQYPSDILENASVELFLDANKLSTPIIEQVAQRSNSELELTSVVENTFPAQDIVQTVTVKRKRGKSQPNCALKEHSMSNIASVKNSYELESSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGERPFICELCGNSYTDIKNLKKHKTKVHSGADKILDSSIEDHPLNEQDSIQKSPLSETLDVKPSDVTLPLTLPLGAEDHHLLLPVADSQPPAPDALLRPAANGYSEPQLIFLQQLY", "length": 581 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99MD8-1", "protein_name": "Myoneurin", "gene_name": "Mynn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTVVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIASPSSTEISSITGNIELNQQACLLTLRDYNNREKSEVSTDSVQANPKPRALTKKSSQSKKKKKAFSSQKPGQSKAVQYPSDVLESASVELFLETSKLSSPVVEQIIQGNDSSELELTSVVENTFPTQDIVQTVTVKRKRRKSQSHCALKEHSMSNIASVKSPYELENAGEELDARFSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKNPDCSVDDHAVSEQDSVQRSPLSETLDVKPSDMTLPLALPLGTEDHQMLLPVTDSQSPASDTLLRSTVNGYSEPQLIFLQQLY", "length": 610 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPC7-1", "protein_name": "Myoneurin", "gene_name": "MYNN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIANPSSTEISSITGNIELNQQTCLLTLRDYNNREKSEVSTDLIQANPKQGALAKKSSQTKKKKKAFNSPKTGQNKTVQYPSDILENASVELFLDANKLPTPVVEQVAQINDNSELELTSVVENTFPAQDIVHTVTVKRKRGKSQPNCALKEHSMSNIASVKSPYEAENSGEELDQRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGADKTLDSSAEDHTLSEQDSIQKSPLSETMDVKPSDMTLPLALPLGTEDHHMLLPVTDTQSPTSDTLLRSTVNGYSEPQLIFLQQLY", "length": 610 }, "evidence": [ { "id": "A0A4X1VEG1", "url": "https://omabrowser.org/oma/group/A0A4X1VEG1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VEG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 89, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1VEG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEG1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 301, "end_pos": 328, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 552, "end_pos": 554 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W1R8-1", "uniprot_ac": "A0A4X1W1R8", "uniprot_id": "A0A4X1W1R8_PIG", "mass": { "chemical_mass": 57082.0, "monoisotopic_mass": 57082.0 }, "refseq": { "ac": "XP_020946716", "name": "fibroblast growth factor receptor substrate 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946716" }, "gene_names": [ { "name": "FRS2", "type": "recommended", "evidence": [ { "id": "A0A4X1W1R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ] }, { "name": "FRS2", "type": "synonym", "evidence": [ { "id": "XP_020946716", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946716" } ] } ], "protein_names": [ { "name": "Fibroblast growth factor receptor substrate 2", "type": "synonym", "evidence": [ { "id": "A0A4X1W1R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8/entry#names_and_taxonomy" } ] }, { "name": "fibroblast growth factor receptor substrate 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020946716", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946716" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRS2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8", "locus": { "chromosome": "5", "start_pos": 33849953, "end_pos": 33725444, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000493", "url": "https://www.ensembl.org/id/ENSSSCG00000000493" } ] } } ], "crossref": [ { "id": "cd01202", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01202", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517823", "url": "https://www.ncbi.nlm.nih.gov/gene/100517823", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AHKIDYS", "url": "https://omabrowser.org/oma/group/AHKIDYS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VX88", "url": "https://www.orthodb.org/?gene=A0A4X1VX88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W1R8", "url": "https://www.orthodb.org/?gene=A0A4X1W1R8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-109704", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1257604", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-170968", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-170968", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654693", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654693", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654710", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654710", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654712", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654726", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654726", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654727", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654727", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654732", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654732", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8853659", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9028731", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9028731", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020946716", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946716", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VX88", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VX88-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1C1L9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C1L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1C1L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C1L9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNCTSVHVPLEARISNAESNTPKEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGNGANNTEWDTGYDSDERRDVPSVNKLVYENLNGLSLPSASGLRRGRLPSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 508, "header": "tr|A0A4X1W1R8-1|A0A4X1W1R8_PIG Isoform 1 of Fibroblast growth factor receptor substrate 2 OS=Sus scrofa OX=9823 GN=FRS2 PE=4 SV=1 CANONICAL=A0A4X1W1R8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VX88-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX88/entry", "sequence": { "sequence": "MKQSICHKVRCSCGFSTRLGQNFIYFSQKRNLQVLTWSSEEAMGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNCTSVHVPLEARISNAESNTPKEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGNGANNTEWDTGYDSDERRDVPSVNKLVYENLNGLSLPSASGLRRGRLPSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 550, "header": "tr|A0A4X1VX88-1|A0A4X1VX88_PIG Computationally mapped isoform of Fibroblast growth factor receptor substrate 2 OS=Sus scrofa OX=9823 GN=FRS2 PE=4 SV=1 CANONICAL=A0A4X1W1R8-1" }, "locus": { "chromosome": "5", "start_pos": 33848795, "end_pos": 33785836, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040112.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040112.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053238.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053238.1" } ] } }, { "isoform_ac": "A0A4X1W1R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8/entry", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNCTSVHVPLEARISNAESNTPKEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGNGANNTEWDTGYDSDERRDVPSVNKLVYENLNGLSLPSASGLRRGRLPSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 508, "header": "tr|A0A4X1W1R8-1|A0A4X1W1R8_PIG Isoform 1 of Fibroblast growth factor receptor substrate 2 OS=Sus scrofa OX=9823 GN=FRS2 PE=4 SV=1 CANONICAL=A0A4X1W1R8-1" }, "locus": { "chromosome": "5", "start_pos": 33848795, "end_pos": 33842219, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044494.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044494.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048646.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048646.1" } ] } }, { "isoform_ac": "A0A8D1C1L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C1L9/entry", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNCTSVHVPLEARISNAESNTPKEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGNGANNTEWDTGYDSDERRDVPSVNKLVYENLNGLSLPSASGLRRGRLPSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAEN", "length": 482, "header": "tr|A0A8D1C1L9-1|A0A8D1C1L9_PIG Computationally mapped isoform of Fibroblast growth factor receptor substrate 2 OS=Sus scrofa OX=9823 GN=FRS2 PE=4 SV=1 CANONICAL=A0A4X1W1R8-1" }, "locus": { "chromosome": "5", "start_pos": 33848767, "end_pos": 33842219, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055620.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055620.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047470.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047470.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 256, "start_aa": "Thr", "end_pos": 256, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr256", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-109704", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "resource": "Reactome", "description": "PI3K Cascade" }, { "id": "R-SSC-1257604", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "resource": "Reactome", "description": "PIP3 activates AKT signaling" }, { "id": "R-SSC-170968", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-170968", "resource": "Reactome", "description": "Frs2-mediated activation" }, { "id": "R-SSC-5654689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654689", "resource": "Reactome", "description": "PI-3K cascade:FGFR1" }, { "id": "R-SSC-5654693", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654693", "resource": "Reactome", "description": "FRS-mediated FGFR1 signaling" }, { "id": "R-SSC-5654695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654695", "resource": "Reactome", "description": "PI-3K cascade:FGFR2" }, { "id": "R-SSC-5654710", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654710", "resource": "Reactome", "description": "PI-3K cascade:FGFR3" }, { "id": "R-SSC-5654712", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "resource": "Reactome", "description": "FRS-mediated FGFR4 signaling" }, { "id": "R-SSC-5654720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "resource": "Reactome", "description": "PI-3K cascade:FGFR4" }, { "id": "R-SSC-5654726", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654726", "resource": "Reactome", "description": "Negative regulation of FGFR1 signaling" }, { "id": "R-SSC-5654727", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654727", "resource": "Reactome", "description": "Negative regulation of FGFR2 signaling" }, { "id": "R-SSC-5654732", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654732", "resource": "Reactome", "description": "Negative regulation of FGFR3 signaling" }, { "id": "R-SSC-5654733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "resource": "Reactome", "description": "Negative regulation of FGFR4 signaling" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" }, { "id": "R-SSC-6811558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "resource": "Reactome", "description": "PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling" }, { "id": "R-SSC-8853659", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "resource": "Reactome", "description": "RET signaling" }, { "id": "R-SSC-9028731", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9028731", "resource": "Reactome", "description": "Activated NTRK2 signals through FRS2 and FRS3" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A9E6-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "Frs2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTWSSEEAMGSCCSCPEKDTVPDNHRNKFKVINVDDDGNELGSGVMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNSHQTELEVPRTPRTPTTPGLGAQSLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRASVHIPPEARVSNAESNTPKEEPSNTEDRDPHVLLKPEGVKFVLGPTPVQKQLMEKEKLEQLGKDQVSGSGASSTEWDTGYDSDERRDVPPVNKLVYENINGLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRPALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIDCSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 517 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M6Z5Y5-1", "protein_name": "Fibroblast growth factor receptor substrate 2a isoform X1", "gene_name": "frs2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGWVQWCVKGAMGSCCSCPDKEIIPDNHHNKFKVINVDDDGNELGSGVMELTEEELILHTRKRDAVKWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEEIFNMLQDIMHNNSISVVEEPVLEPELPATPHTPTTPGYSVPTVANGISRYPLFDASSRPSSRHPSVGSTRLPSVGEESTHPLLLNDETVHTYVNTTGLQEERRCRSTGHTPLEPETSNHESAVPASPNEQEPCVVLEPESVKFVLGPTPVQRQRQQQETGEEATNSEHTSYTPPVKTVNGNAGLMADCDTGYDSDERKETSCEHHNGISTGARRIRPPVPLPDAHNANNSAQRRTALLNYENLPALPPVWEMRKPEEDELKSPSLNGFHSLDPQHNYVNTENVTVPLSAHKHNSQPSVFNFDLRRLGVGDPLRQLNYIEVEMDKVSDSSGPHTPKTPTTPLPATPTRRTELYAVIDIERTAAMSSLQKAQPRDDGTSRKTRHNSTDLPM", "length": 497 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1B7I9-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "FRS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRTSVHVPLEARVSNAESNTPKEESSNIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQISGSGANNTEWDTGYDSDERRDVPSVNKLVYENLNGLSLPSASGFRRGRLPSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 508 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C021-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "FRS2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSCCSCPDKETVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEAPRTPRTPTTPGFNAQSLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRSSVHAPLESKLSNTETTKVKEDQMCTDDRDAHVLLEPEGVKFVLGPTPVQRQLMEREKLEQLGRDQVSGSSTNNTEWDTGYDSDERRETPSGNKLVYENINRLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWESRKLSRDEDDSLGPKTPSLNGYHNNLDPMHNYVNTENVTVPSSAHKIEFPRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSSLQKALPRDDGTSRKTRHNSTDLPM", "length": 508 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HZ39-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "Frs2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNSHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRASVHVPPPEARVSNVESNTPKEEPSNIEDRDPQVLLKPEGVKFVLGPTPVQKQLMEKERLEQLGRDQVSGGGANSMEWDTGYDSDERRDVPSVNKLVYENINGLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDSLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIDYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 509 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8C180-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "Frs2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGVMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERSSHQTELEVPRTPRTPTTPGLGAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRASVHVPPEARVSNAESNTPKEEPSNPEDRDPQVLLKPEGVRFVLGPTPVQKQLMEKEKLEQLGKDPVSGSGAGNTEWDTGYDSDERRDVPPVNKLVYENINGLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRPALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIDYSKRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 508 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WU20-1", "protein_name": "Fibroblast growth factor receptor substrate 2", "gene_name": "FRS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSCCSCPDKDTVPDNHRNKFKVINVDDDGNELGSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVPRTPRTPTTPGFAAQNLPNGYPRYPSFGDASSHPSSRHPSVGSARLPSVGEESTHPLLVAEEQVHTYVNTTGVQEERKNRTSVHVPLEARVSNAESSTPKEEPSSIEDRDPQILLEPEGVKFVLGPTPVQKQLMEKEKLEQLGRDQVSGSGANNTEWDTGYDSDERRDAPSVNKLVYENINGLSIPSASGVRRGRLTSTSTSDTQNINNSAQRRTALLNYENLPSLPPVWEARKLSRDEDDNLGPKTPSLNGYHNNLDPMHNYVNTENVTVPASAHKIEYSRRRDCTPTVFNFDIRRPSLEHRQLNYIQVDLEGGSDSDNPQTPKTPTTPLPQTPTRRTELYAVIDIERTAAMSNLQKALPRDDGTSRKTRHNSTDLPM", "length": 508 }, "evidence": [ { "id": "A0A4X1W1R8", "url": "https://omabrowser.org/oma/group/A0A4X1W1R8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "neurotrophin TRKA receptor binding", "id": "GO:0005168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005168", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "transmembrane receptor protein tyrosine kinase adaptor activity", "id": "GO:0005068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005068", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "fibroblast growth factor receptor binding", "id": "GO:0005104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005104", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of cardiac muscle cell differentiation", "id": "GO:2000726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000726", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" }, { "name": "fibroblast growth factor receptor signaling pathway", "id": "GO:0008543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008543", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W1R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W1R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1R8" }, { "id": "PS51064", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IRS-type PTB", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 115, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 256 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 397, "end_pos": 399 }, { "start_pos": 502, "end_pos": 504 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WA18-1", "uniprot_ac": "A0A4X1WA18", "uniprot_id": "A0A4X1WA18_PIG", "mass": { "chemical_mass": 19300.0, "monoisotopic_mass": 19300.0 }, "refseq": { "ac": "XP_020943085", "name": "calcineurin subunit B type 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943085" }, "gene_names": [ { "name": "PPP3R1", "type": "recommended", "evidence": [ { "id": "A0A4X1WA18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ] }, { "name": "PPP3R1", "type": "synonym", "evidence": [ { "id": "XP_020943085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943085" } ] } ], "protein_names": [ { "name": "Protein phosphatase 3 regulatory subunit B, alpha", "type": "synonym", "evidence": [ { "id": "A0A4X1WA18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18/entry#names_and_taxonomy" } ] }, { "name": "calcineurin subunit B type 1", "type": "synonym", "evidence": [ { "id": "XP_020943085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943085" } ] } ], "function": [ { "annotation": "Regulatory subunit of calcineurin, a calcium-dependent, calmodulin stimulated protein phosphatase. Confers calcium sensitivity.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18#function" }, { "database": "UniProtKB", "id": "ARBA00023754", "url": "https://www.uniprot.org/uniprotkb/ARBA00023754#function" }, { "database": "UniProtKB", "id": "A0A4X1WA77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA77#function" }, { "database": "UniProtKB", "id": "A0A5G2QGP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP8#function" }, { "database": "UniProtKB", "id": "A0A8D0MPH9", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MPH9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP3R1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18", "locus": { "chromosome": "3", "start_pos": 74068172, "end_pos": 74000517, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036115", "url": "https://www.ensembl.org/id/ENSSSCG00000036115" } ] } } ], "crossref": [ { "id": "A0A4X1WA18", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WA18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036115", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036115", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627903", "url": "https://www.ncbi.nlm.nih.gov/gene/100627903", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627903", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627903", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DTNFDRD", "url": "https://omabrowser.org/oma/group/DTNFDRD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WA18", "url": "https://www.orthodb.org/?gene=A0A4X1WA18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45942", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45942", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-111447", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871809", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4086398", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607763", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607763", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943085", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WA18-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WA77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MPH9", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MPH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MPH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MPH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170, "header": "tr|A0A4X1WA18-1|A0A4X1WA18_PIG Isoform 1 of Protein phosphatase 3 regulatory subunit B, alpha OS=Sus scrofa OX=9823 GN=PPP3R1 PE=1 SV=1 CANONICAL=A0A4X1WA18-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WA18-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18/entry", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170, "header": "tr|A0A4X1WA18-1|A0A4X1WA18_PIG Isoform 1 of Protein phosphatase 3 regulatory subunit B, alpha OS=Sus scrofa OX=9823 GN=PPP3R1 PE=1 SV=1 CANONICAL=A0A4X1WA18-1" }, "locus": { "chromosome": "3", "start_pos": 74066082, "end_pos": 74005126, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096866.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096866.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080635.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080635.1" } ] } }, { "isoform_ac": "A0A4X1WA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA77/entry", "sequence": { "sequence": "MQPRPLQRGFCGMKLGGKKGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 188, "header": "tr|A0A4X1WA77-1|A0A4X1WA77_PIG Computationally mapped isoform of Protein phosphatase 3 regulatory subunit B, alpha OS=Sus scrofa OX=9823 GN=PPP3R1 PE=1 SV=1 CANONICAL=A0A4X1WA18-1" }, "locus": { "chromosome": "3", "start_pos": 74066082, "end_pos": 74000517, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094443.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094443.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076133.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076133.1" } ] } }, { "isoform_ac": "A0A5G2QGP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP8/entry", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAYSALEISVWFCLIAPYSEFLQCSLF", "length": 180, "header": "tr|A0A5G2QGP8-1|A0A5G2QGP8_PIG Computationally mapped isoform of Protein phosphatase 3 regulatory subunit B, alpha OS=Sus scrofa OX=9823 GN=PPP3R1 PE=1 SV=1 CANONICAL=A0A4X1WA18-1" }, "locus": { "chromosome": "3", "start_pos": 74063036, "end_pos": 74005126, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091289.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091289.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062983.1" } ] } }, { "isoform_ac": "A0A8D0MPH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MPH9/entry", "sequence": { "sequence": "MLGKLDHCLNTRHKGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 183, "header": "tr|A0A8D0MPH9-1|A0A8D0MPH9_PIG Computationally mapped isoform of Protein phosphatase 3 regulatory subunit B, alpha OS=Sus scrofa OX=9823 GN=PPP3R1 PE=1 SV=1 CANONICAL=A0A4X1WA18-1" }, "locus": { "chromosome": "3", "start_pos": 74066082, "end_pos": 74021728, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039838.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039838.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041537.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041537.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627903", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627903", "resource": "KEGG Pathway" }, { "id": "R-SSC-111447", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "resource": "Reactome", "description": "Activation of BAD and translocation to mitochondria" }, { "id": "R-SSC-2871809", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "resource": "Reactome", "description": "FCERI mediated Ca+2 mobilization" }, { "id": "R-SSC-4086398", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "resource": "Reactome", "description": "Ca2+ pathway" }, { "id": "R-SSC-5607763", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607763", "resource": "Reactome", "description": "CLEC7A (Dectin-1) induces NFAT activation" } ], "orthologs": [ { "uniprot_canonical_ac": "P25296-1", "protein_name": "Calcineurin subunit B", "gene_name": "CNB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGAAPSKIVDGLLEDTNFDRDEIERLRKRFMKLDRDSSGSIDKNEFMSIPGVSSNPLAGRIMEVFDADNSGDVDFQEFITGLSIFSGRGSKDEKLRFAFKIYDIDKDGFISNGELFIVLKIMVGSNLDDEQLQQIVDRTIVENDSDGDGRLSFEEFKNAIETTEVAKSLTLQYDV", "length": 175 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P63098-1", "protein_name": "Calcineurin subunit B type 1", "gene_name": "PPP3R1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P63099-1", "protein_name": "Calcineurin subunit B type 1", "gene_name": "PPP3R1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P63100-1", "protein_name": "Calcineurin subunit B type 1", "gene_name": "Ppp3r1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q24214-1", "protein_name": "Calcineurin subunit B type 2", "gene_name": "CanB2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGNETSLPMEMCSNFDADEIRRLGKRFRKLDLDNSGALSVDEFMSLPELQQNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVKGDKLSKLRFAFRIYDMDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIGFADKDEDGKISFDEFCSVVGNTDIHKKMVVDV", "length": 170 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q55G87-1", "protein_name": "Calcineurin subunit B type 1", "gene_name": "cnbA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNQHSLLNKEQLEQMKDNSSFSEAELKKLYRRFQMLDKDGSGTLTTDEFLSIPDLALNPLLERVIQIFDQNKDNEIEFFEFVGTLATLSHKGTKEDKLKFLFQIYDIDCDGFISNGELFQVLKMMVGTNLNDVQLQQIVDKTIIEGDYDKDGKISFDEFIHMIGNQEGIEEKLSVNWSE", "length": 180 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q63810-1", "protein_name": "Calcineurin subunit B type 1", "gene_name": "Ppp3r1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV", "length": 170 }, "evidence": [ { "id": "A0A4X1WA18", "url": "https://omabrowser.org/oma/group/A0A4X1WA18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "phosphoprotein phosphatase activity", "id": "GO:0004721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004721", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "calcium-dependent protein serine/threonine phosphatase regulator activity", "id": "GO:0008597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008597", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "calcineurin complex", "id": "GO:0005955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005955", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "hippocampal mossy fiber to CA3 synapse", "id": "GO:0098686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098686", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "parallel fiber to Purkinje cell synapse", "id": "GO:0098688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098688", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "calcineurin-NFAT signaling cascade", "id": "GO:0033173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033173", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "postsynaptic modulation of chemical synaptic transmission", "id": "GO:0099170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099170", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle cycle", "id": "GO:0098693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098693", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" }, { "name": "regulation of postsynaptic neurotransmitter receptor internalization", "id": "GO:0099149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099149", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WA18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WA18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WA18" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 85, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W0V1-1", "uniprot_ac": "A0A4X1W0V1", "uniprot_id": "A0A4X1W0V1_PIG", "mass": { "chemical_mass": 59210.0, "monoisotopic_mass": 59210.0 }, "refseq": {}, "gene_names": [ { "name": "LRRTM4", "type": "recommended", "evidence": [ { "id": "A0A4X1W0V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1" } ] } ], "protein_names": [ { "name": "Leucine rich repeat transmembrane neuronal 4", "type": "synonym", "evidence": [ { "id": "A0A4X1W0V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRTM4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1", "locus": { "chromosome": "3", "start_pos": 66884740, "end_pos": 66128689, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008259", "url": "https://www.ensembl.org/id/ENSSSCG00000008259" } ] } } ], "crossref": [ { "id": "A0A4X1W0V1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W0V1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008259", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008259", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525866", "url": "https://www.ncbi.nlm.nih.gov/gene/100525866", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525866", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525866", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLAYYRY", "url": "https://omabrowser.org/oma/group/TLAYYRY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AUJ3", "url": "https://www.orthodb.org/?gene=A0A287AUJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6794361", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6794361", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AUJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AUJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W0V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFHLITQLRGMRVVLVLLPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRFNSIQKLKSNQFASLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRSLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDIQGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECTRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKVSDAVETYNICSEVQVVNTEKSHLVPQSPQKPLIIPKPTTFKSDLTQPTLEIPSPSPGFQIPGTEQEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKTRESERQMNSPLQEYYVDYKPTNSETMDISVNGSGPCTYTISGSRECEV", "length": 518, "header": "tr|A0A4X1W0V1-1|A0A4X1W0V1_PIG Isoform 1 of Leucine rich repeat transmembrane neuronal 4 OS=Sus scrofa OX=9823 GN=LRRTM4 PE=3 SV=1 CANONICAL=A0A4X1W0V1-1" }, "isoforms": [ { "isoform_ac": "A0A287AUJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUJ3/entry", "sequence": { "sequence": "MGFHLITQLRGMRVVLVLLPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRFNSIQKLKSNQFASLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRSLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDIQGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECTRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKVSDAVETYNICSEVQVVNTEKSHLVPQSPQKPLIIPKPTTFKSDLTQPTLEIPSPSPGFQIPGTEQEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKTRESERQMNSPLQEYYVDYKPTNSETMDISVNGSGPCTYTISGSRECEILHHVKPLPYYSYDQPVIRYCQAHQPLHVNKGYEGVALEQDETPSLELGHDHSFIATIARSAAPAIYLERITN", "length": 590, "header": "tr|A0A287AUJ3-1|A0A287AUJ3_PIG Computationally mapped isoform of Leucine rich repeat transmembrane neuronal 4 OS=Sus scrofa OX=9823 GN=LRRTM4 PE=3 SV=1 CANONICAL=A0A4X1W0V1-1" }, "locus": { "chromosome": "3", "start_pos": 66884737, "end_pos": 66129388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047761.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047761.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047522.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047522.2" } ] } }, { "isoform_ac": "A0A4X1W0V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1/entry", "sequence": { "sequence": "MGFHLITQLRGMRVVLVLLPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRFNSIQKLKSNQFASLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRSLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDIQGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECTRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKVSDAVETYNICSEVQVVNTEKSHLVPQSPQKPLIIPKPTTFKSDLTQPTLEIPSPSPGFQIPGTEQEYEHVSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKTRESERQMNSPLQEYYVDYKPTNSETMDISVNGSGPCTYTISGSRECEV", "length": 518, "header": "tr|A0A4X1W0V1-1|A0A4X1W0V1_PIG Isoform 1 of Leucine rich repeat transmembrane neuronal 4 OS=Sus scrofa OX=9823 GN=LRRTM4 PE=3 SV=1 CANONICAL=A0A4X1W0V1-1" }, "locus": { "chromosome": "3", "start_pos": 66132763, "end_pos": 66129388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009045.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009045.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008817.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008817.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525866", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525866", "resource": "KEGG Pathway" }, { "id": "R-SSC-6794361", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6794361", "resource": "Reactome", "description": "Neurexins and neuroligins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W0V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W0V1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VV85-1", "uniprot_ac": "A0A4X1VV85", "uniprot_id": "A0A4X1VV85_PIG", "mass": { "chemical_mass": 24739.0, "monoisotopic_mass": 24739.0 }, "refseq": {}, "gene_names": [ { "name": "C1orf43", "type": "recommended", "evidence": [ { "id": "A0A4X1VV85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ] }, { "name": "C4H1orf43", "type": "recommended", "evidence": [ { "id": "A0A4X1VV85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ] }, { "name": "C1orf43", "type": "synonym", "evidence": [ { "id": "A0A4X1VV85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ] } ], "protein_names": [ { "name": "Lipid transport auxiliary protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1VV85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for the formation of endoplasmic reticulum-plasma membrane junctions and functions as an accessory protein for bridge-like lipid transfer protein BLTP1, participating in lipid delivery between endoplasmic reticulum and cell membranes. Regulates the phagocytosis of Gram-negative bacteria like L. pneumophila and E. coli, as well as Gram-positive bacteria such as S. aureus.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B647", "url": "https://www.uniprot.org/uniprotkb/A0A287B647#function" }, { "database": "UniProtKB", "id": "ARBA00094356", "url": "https://www.uniprot.org/uniprotkb/ARBA00094356#function" }, { "database": "UniProtKB", "id": "A0A4X1VZV1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZV1#function" }, { "database": "UniProtKB", "id": "F1RGK8", "url": "https://www.uniprot.org/uniprotkb/F1RGK8#function" }, { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1orf43", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85", "locus": { "chromosome": "4", "start_pos": 95530846, "end_pos": 95519992, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006554", "url": "https://www.ensembl.org/id/ENSSSCG00000006554" } ] } } ], "crossref": [ { "id": "A0A4X1VV85", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VV85", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518371", "url": "https://www.ncbi.nlm.nih.gov/gene/100518371", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518371", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518371", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHAKVNM", "url": "https://omabrowser.org/oma/group/QHAKVNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGK8", "url": "https://www.orthodb.org/?gene=F1RGK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21425", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21425", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21425:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21425:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07406", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07406", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B647", "url": "https://www.uniprot.org/uniprotkb/A0A287B647", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B647-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B647-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VV85-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZV1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGK8", "url": "https://www.uniprot.org/uniprotkb/F1RGK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RGK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 219, "header": "tr|A0A4X1VV85-1|A0A4X1VV85_PIG Isoform 1 of Lipid transport auxiliary protein 1 OS=Sus scrofa OX=9823 GN=C1orf43 PE=3 SV=1 CANONICAL=A0A4X1VV85-1" }, "isoforms": [ { "isoform_ac": "A0A287B647-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B647/entry", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGGQSTKWELSATTPVSSQRPNPVS", "length": 192, "header": "tr|A0A287B647-1|A0A287B647_PIG Computationally mapped isoform of Lipid transport auxiliary protein 1 OS=Sus scrofa OX=9823 GN=C4H1orf43 PE=3 SV=2 CANONICAL=A0A4X1VV85-1" }, "locus": { "chromosome": "4", "start_pos": 95529989, "end_pos": 95520260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037652.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037652.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051559.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051559.2" } ] } }, { "isoform_ac": "A0A4X1VV85-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85/entry", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 219, "header": "tr|A0A4X1VV85-1|A0A4X1VV85_PIG Isoform 1 of Lipid transport auxiliary protein 1 OS=Sus scrofa OX=9823 GN=C1orf43 PE=3 SV=1 CANONICAL=A0A4X1VV85-1" }, "locus": { "chromosome": "4", "start_pos": 95530113, "end_pos": 95520260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076754.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076754.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065365.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065365.1" } ] } }, { "isoform_ac": "A0A4X1VZV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZV1/entry", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 235, "header": "tr|A0A4X1VZV1-1|A0A4X1VZV1_PIG Computationally mapped isoform of Lipid transport auxiliary protein 1 OS=Sus scrofa OX=9823 GN=C1orf43 PE=3 SV=1 CANONICAL=A0A4X1VV85-1" }, "locus": { "chromosome": "4", "start_pos": 95530113, "end_pos": 95520260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083389.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083389.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067032.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067032.1" } ] } }, { "isoform_ac": "F1RGK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RGK8/entry", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 253, "header": "tr|F1RGK8-1|F1RGK8_PIG Computationally mapped isoform of Lipid transport auxiliary protein 1 OS=Sus scrofa OX=9823 GN=C1orf43 PE=3 SV=1 CANONICAL=A0A4X1VV85-1" }, "locus": { "chromosome": "4", "start_pos": 95530113, "end_pos": 95520260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007179.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007179.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006986.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006986.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518371", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518371", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A1ZAM0-1", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "Dmel\\CG6665", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDGHLRLHKVGDYAAPSLQEKASKAGGNMEQLSGVMIIIIISGGVLTCLMLFIFAKRQIMRFQLRGRRGPHVPVGNDAKKALRREIERRLDCIQKITQEPKLLWDDGDKYIVQPEQEAPLPPYYYRMKAVDDVKLLESEIARADGSSRHAPESLRAFLLTTLSVTLNGAGQRMIHQYCDMYEHARHDPNEFGKDEYEAYHHLLLKLMEASKQLKNYNSRKASPARTPRKQTKMHSLLDPARLRPPTTLENVQPSSELKTGQHAKVNLTLGLQGGGGGGGDGPAELATNPLHLQAPSDRDLIIRNRIKTPTLDDIIVEADHHQSSDGGVMEDNEIKSISSMQFQRNSSNV", "length": 349 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1N2C1-1", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "C3H1orf43", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSKVQDIKYEPQLLADDDARLLQLETQGNQNCYNYLYRMKALDAIRASEIPFHAEGRHPHSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGLSEYLRYQEALSELATVVKARSGSSQRQHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 253 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HBZ9-1", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "C1H1orf43", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASSSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDTRLLQLETQGNQTGCYNYLYRMKALDAIRASEIPFHAEGRHPCSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARIGSSQRQHQSAAKDLTQSPEMSPTTIQVTYLPSSQKSKRPKHFLELKSFKDNYNTLESTL", "length": 254 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5XII8-1", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "Ltap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDTRLLQLETQGSQKIPFHAEGRHPCSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARIGSSQRQHQSAAKDLTQSPEMSPTTIQVTYLPSSQKSKRPKHFLELKSFKDNYNTLESTL", "length": 235 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R092-3", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "Ltap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDTRLLQLETQGNQSCYNYLYRMKALDAIRASEIPFHAEGRHPCSLMGKNFRSYLLDLRNTSTPFKGVGKALIDTLLDGYETARYGTGVFGQSEYLRYQEALSELATVVKARIGSSQRQHQSAAKDLTQSPEMSPTTIQVTYLPSSQKSKRPKHFLELKSFKDNYNTLESTL", "length": 253 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BWL3-1", "protein_name": "Lipid transport auxiliary protein 1", "gene_name": "LTAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL", "length": 253 }, "evidence": [ { "id": "A0A4X1VV85", "url": "https://omabrowser.org/oma/group/A0A4X1VV85/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "pmid": "" }, { "name": "endoplasmic reticulum-plasma membrane contact site", "id": "GO:0140268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140268", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phagocytosis", "id": "GO:0006909", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006909", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VV85", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VV85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W7V1-1", "uniprot_ac": "A0A4X1W7V1", "uniprot_id": "A0A4X1W7V1_PIG", "mass": { "chemical_mass": 45855.0, "monoisotopic_mass": 45855.0 }, "refseq": { "ac": "XP_001928782", "name": "26S protease regulatory subunit 10B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928782" }, "gene_names": [ { "name": "PSMC6", "type": "recommended", "evidence": [ { "id": "A0A4X1W7V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ] }, { "name": "PSMC6", "type": "synonym", "evidence": [ { "id": "XP_001928782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928782" } ] } ], "protein_names": [ { "name": "26S proteasome regulatory subunit 10B", "type": "recommended", "evidence": [ { "id": "A0A4X1W7V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1/entry#names_and_taxonomy" } ] }, { "name": "26S protease regulatory subunit 10B", "type": "synonym", "evidence": [ { "id": "XP_001928782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928782" } ] }, { "name": "26S proteasome AAA-ATPase subunit RPT4", "type": "synonym", "evidence": [ { "id": "A0A4X1W7V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1/entry#names_and_taxonomy" } ] }, { "name": "Proteasome 26S subunit ATPase 6", "type": "synonym", "evidence": [ { "id": "A0A4X1W7V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMC6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1", "locus": { "chromosome": "1", "start_pos": 182354958, "end_pos": 182328521, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005038", "url": "https://www.ensembl.org/id/ENSSSCG00000005038" } ] } } ], "crossref": [ { "id": "A0A4X1W7V1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W7V1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005038", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005038", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19502", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19502", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154148", "url": "https://www.ncbi.nlm.nih.gov/gene/100154148", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050221", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050221", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154148", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154148", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W7V1", "url": "https://www.orthodb.org/?gene=A0A4X1W7V1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16450", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16450", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9907900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BG14", "url": "https://www.uniprot.org/uniprotkb/A0A287BG14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1V831", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V831", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1V831-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V831-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQU7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIPDIPYERRLLIMADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV", "length": 403, "header": "tr|A0A4X1W7V1-1|A0A4X1W7V1_PIG Isoform 1 of 26S proteasome regulatory subunit 10B OS=Sus scrofa OX=9823 GN=PSMC6 PE=1 SV=1 CANONICAL=A0A4X1W7V1-1" }, "isoforms": [ { "isoform_ac": "A0A287BG14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG14/entry", "sequence": { "sequence": "MYILYFTSISVYYSLLWFQEGSDSSISRLLRYTRSGPCFTQADQQGTVWPEASFNSLRSPSEGGIEVPEEECRGGPTGRGGVARKPALPGRLFSLAPPLPPPRRPWPFPTSPMSDGFSSWRTLEIRRFRTTARSCWSTRRSMAVSRSIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV", "length": 481, "header": "tr|A0A287BG14-1|A0A287BG14_PIG Computationally mapped isoform of Proteasome 26S subunit, ATPase 6 OS=Sus scrofa OX=9823 GN=PSMC6 PE=1 SV=2 CANONICAL=A0A4X1W7V1-1" }, "locus": { "chromosome": "1", "start_pos": 182354576, "end_pos": 182328854, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053879.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053879.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054995.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054995.2" } ] } }, { "isoform_ac": "A0A4X1W7V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1/entry", "sequence": { "sequence": "MAIPDIPYERRLLIMADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV", "length": 403, "header": "tr|A0A4X1W7V1-1|A0A4X1W7V1_PIG Isoform 1 of 26S proteasome regulatory subunit 10B OS=Sus scrofa OX=9823 GN=PSMC6 PE=1 SV=1 CANONICAL=A0A4X1W7V1-1" }, "locus": { "chromosome": "1", "start_pos": 182354576, "end_pos": 182329168, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056381.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056381.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036377.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036377.2" } ] } }, { "isoform_ac": "A0A8D1V831-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V831/entry", "sequence": { "sequence": "YQDLLWRPWPFPTSPMSDGFSSWRTLEIRRFRTTARSCWSTRRSMAVSRSVIFNLFFNFLSLVIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV", "length": 383, "header": "tr|A0A8D1V831-1|A0A8D1V831_PIG Computationally mapped isoform of Proteasome 26S subunit, ATPase 6 OS=Sus scrofa OX=9823 GN=PSMC6 PE=1 SV=1 CANONICAL=A0A4X1W7V1-1" }, "locus": { "chromosome": "1", "start_pos": 182354576, "end_pos": 182328521, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005554.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005554.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005416.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005416.4" } ] } }, { "isoform_ac": "A0A8W4FQU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQU7/entry", "sequence": { "sequence": "MYILYFTSISVYYSLLWFQEGSDSSISRLLRYTRSGPCFTQADQQGTVWPEASFNSLRSPSEGGIEVPEEECRGGPTGRGGVARKPALPGRLFSLAPPLPPPRRPWPFPTSPMSDGFSSWRTLEIRRFRTTARSCWSTRRSMAVSRSVIFNLFFNFLSLVIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV", "length": 480, "header": "tr|A0A8W4FQU7-1|A0A8W4FQU7_PIG Computationally mapped isoform of Proteasome 26S subunit, ATPase 6 OS=Sus scrofa OX=9823 GN=PSMC6 PE=1 SV=1 CANONICAL=A0A4X1W7V1-1" }, "locus": { "chromosome": "1", "start_pos": 182354576, "end_pos": 182328854, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099636.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099636.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080815.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080815.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154148", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154148", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9907900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "resource": "Reactome", "description": "Proteasome assembly" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "proteasome regulatory particle, base subcomplex", "id": "GO:0008540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008540", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "proteasome complex", "id": "GO:0000502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000502", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "proteasome-activating activity", "id": "GO:0036402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036402", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" }, { "name": "positive regulation of RNA polymerase II transcription preinitiation complex assembly", "id": "GO:0045899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045899", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W7V1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7V1" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 180, "end_pos": 319, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 143, "end_pos": 145 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VRP9-1", "uniprot_ac": "A0A4X1VRP9", "uniprot_id": "A0A4X1VRP9_PIG", "mass": { "chemical_mass": 21106.0, "monoisotopic_mass": 21106.0 }, "refseq": {}, "gene_names": [ { "name": "RAB31", "type": "recommended", "evidence": [ { "id": "A0A4X1VRP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "A0A4X1VRP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "A0A4X1VRP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB31", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9", "locus": { "chromosome": "6", "start_pos": 98278647, "end_pos": 98385795, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037264", "url": "https://www.ensembl.org/id/ENSSSCG00000037264" } ] } } ], "crossref": [ { "id": "A0A4X1VRP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VRP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037264", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037264", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01860", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01860", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737127", "url": "https://www.ncbi.nlm.nih.gov/gene/100737127", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737127", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737127", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KQDTFHT", "url": "https://omabrowser.org/oma/group/KQDTFHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480QQS9", "url": "https://www.orthodb.org/?gene=A0A480QQS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47978", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47978", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480QQS9", "url": "https://www.uniprot.org/uniprotkb/A0A480QQS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QQS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VRP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IFALILFQDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAVVVETSAKNAINIEELFQGISRQIPPLDPHENGKNGTIHVTQSHLQGGRRCC", "length": 190, "header": "tr|A0A4X1VRP9-1|A0A4X1VRP9_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB31 PE=1 SV=1 CANONICAL=A0A4X1VRP9-1" }, "isoforms": [ { "isoform_ac": "A0A480QQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QQS9/entry", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAVVVETSAKNAINIEELFQGISRQIPPLDPHENGKNGTIHVTQSHLQGGRRCC", "length": 195, "header": "tr|A0A480QQS9-1|A0A480QQS9_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB31 PE=1 SV=1 CANONICAL=A0A4X1VRP9-1" }, "locus": { "chromosome": "6", "start_pos": 98385695, "end_pos": 98281904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082358.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082358.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063384.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063384.1" } ] } }, { "isoform_ac": "A0A4X1VRP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9/entry", "sequence": { "sequence": "IFALILFQDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAVVVETSAKNAINIEELFQGISRQIPPLDPHENGKNGTIHVTQSHLQGGRRCC", "length": 190, "header": "tr|A0A4X1VRP9-1|A0A4X1VRP9_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB31 PE=1 SV=1 CANONICAL=A0A4X1VRP9-1" }, "locus": { "chromosome": "6", "start_pos": 98354804, "end_pos": 98281904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090061.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090061.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069658.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069658.1" } ] } }, { "isoform_ac": "A0A5G2QI58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI58/entry", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERVRIIRNPA", "length": 75, "header": "tr|A0A5G2QI58-1|A0A5G2QI58_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB31 PE=3 SV=1 CANONICAL=A0A4X1VRP9-1" }, "locus": { "chromosome": "6", "start_pos": 98385695, "end_pos": 98347727, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076931.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076931.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064480.1" } ] } }, { "isoform_ac": "A0A5G2R0G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G5/entry", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAVVVETSAKNAINIEELFQGINWTSPALLTAGPHCASLVP", "length": 182, "header": "tr|A0A5G2R0G5-1|A0A5G2R0G5_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB31 PE=1 SV=1 CANONICAL=A0A4X1VRP9-1" }, "locus": { "chromosome": "6", "start_pos": 98385695, "end_pos": 98295903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067799.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067799.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069880.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069880.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 33, "start_aa": "Thr", "end_pos": 33, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737127", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737127", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X962-1", "protein_name": "small monomeric GTPase", "gene_name": "RAB31", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPMKDAKEYAESIGAIVVETSAKNAVNIEELFQGIMIRTVCSSSLASWCWLCRRLLVSSELAAGLGHAAVPAVLGGVCLHRDSRL", "length": 213 }, "evidence": [ { "id": "A0A4X1VRP9", "url": "https://omabrowser.org/oma/group/A0A4X1VRP9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q13636-1", "protein_name": "Ras-related protein Rab-31", "gene_name": "RAB31", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNGTIKVEKPTMQASRRCC", "length": 195 }, "evidence": [ { "id": "A0A4X1VRP9", "url": "https://omabrowser.org/oma/group/A0A4X1VRP9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6GQP4-1", "protein_name": "Ras-related protein Rab-31", "gene_name": "Rab31", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIKLGNQSLQAGRRCC", "length": 195 }, "evidence": [ { "id": "A0A4X1VRP9", "url": "https://omabrowser.org/oma/group/A0A4X1VRP9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8MYF2-1", "protein_name": "Ras-related protein RabJ", "gene_name": "rabJ", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDPLSISMESKVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKLILNKHNEYFKQFQQQQKLHKQFQQQNQSLYQYHIQQQKHQQQQQQQQQQIFKNQQFYNNGHLQGSINGHNNQNSTNYSDNSDQCCG", "length": 256 }, "evidence": [ { "id": "A0A4X1VRP9", "url": "https://omabrowser.org/oma/group/A0A4X1VRP9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q921E2-1", "protein_name": "Ras-related protein Rab-31", "gene_name": "Rab31", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSGGIKLGNQSLQASRRCC", "length": 195 }, "evidence": [ { "id": "A0A4X1VRP9", "url": "https://omabrowser.org/oma/group/A0A4X1VRP9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "phagosome maturation", "id": "GO:0090382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090382", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "receptor internalization", "id": "GO:0031623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031623", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "cellular response to insulin stimulus", "id": "GO:0032869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032869", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "regulated exocytosis", "id": "GO:0045055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045055", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "Golgi to plasma membrane protein transport", "id": "GO:0043001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043001", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "positive regulation of phagocytosis, engulfment", "id": "GO:0060100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060100", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "early phagosome membrane", "id": "GO:0036186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036186", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "phagocytic vesicle membrane", "id": "GO:0030670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030670", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRP9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-6798743", "name": "Exocytosis of secretory granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, secretory granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798743", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798743" } ] }, { "id": "R-SSC-8877311", "name": "RAB31 GEFs exchange GTP for GDP on RAB31", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, early endosome membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8877311", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8877311" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 33 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V854-1", "uniprot_ac": "A0A4X1V854", "uniprot_id": "A0A4X1V854_PIG", "mass": { "chemical_mass": 15858.0, "monoisotopic_mass": 15858.0 }, "refseq": {}, "gene_names": [ { "name": "ASF1B", "type": "recommended", "evidence": [ { "id": "A0A4X1V854", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ] } ], "protein_names": [ { "name": "Anti-silencing function 1B histone chaperone", "type": "synonym", "evidence": [ { "id": "A0A4X1V854", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASF1B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854", "locus": { "chromosome": "2", "start_pos": 65072679, "end_pos": 65062766, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013772", "url": "https://www.ensembl.org/id/ENSSSCG00000013772" } ] } } ], "crossref": [ { "id": "A0A4X1V854", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V854", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR006818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12040", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12040", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12040:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12040:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V854-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKVSVLNVAVLENPSPFHSPFRFEISFECNEALTDDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQLQRNILASNPRVTRFHINWDNNTDRLEAIENQDPALGCGFPLSCTPIKGLGLPGCIPGLLPENSMDCI", "length": 143, "header": "tr|A0A4X1V854-1|A0A4X1V854_PIG Isoform 1 of Anti-silencing function 1B histone chaperone OS=Sus scrofa OX=9823 GN=ASF1B PE=3 SV=1 CANONICAL=A0A4X1V854-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V854-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854/entry", "sequence": { "sequence": "MAKVSVLNVAVLENPSPFHSPFRFEISFECNEALTDDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQLQRNILASNPRVTRFHINWDNNTDRLEAIENQDPALGCGFPLSCTPIKGLGLPGCIPGLLPENSMDCI", "length": 143, "header": "tr|A0A4X1V854-1|A0A4X1V854_PIG Isoform 1 of Anti-silencing function 1B histone chaperone OS=Sus scrofa OX=9823 GN=ASF1B PE=3 SV=1 CANONICAL=A0A4X1V854-1" }, "locus": { "chromosome": "2", "start_pos": 65071679, "end_pos": 65063277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015047.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015047.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014642.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014642.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V854" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VIC5-1", "uniprot_ac": "A0A4X1VIC5", "uniprot_id": "A0A4X1VIC5_PIG", "mass": { "chemical_mass": 16162.0, "monoisotopic_mass": 16162.0 }, "refseq": {}, "gene_names": [ { "name": "PNRC1", "type": "recommended", "evidence": [ { "id": "A0A4X1VIC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ] } ], "protein_names": [ { "name": "Proline rich nuclear receptor coactivator 1", "type": "synonym", "evidence": [ { "id": "A0A4X1VIC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PNRC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5", "locus": { "chromosome": "1", "start_pos": 57136135, "end_pos": 57128303, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039953", "url": "https://www.ensembl.org/id/ENSSSCG00000039953" } ] } } ], "crossref": [ { "id": "A0A4X1VIC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VIC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039953", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039953", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106508885", "url": "https://www.ncbi.nlm.nih.gov/gene/106508885", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106508885", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106508885", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SRYQQFQ", "url": "https://omabrowser.org/oma/group/SRYQQFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A2S5", "url": "https://www.orthodb.org/?gene=A0A287A2S5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15405", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15405", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A2S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A2S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2S5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VIC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDIIQKQEKKPLKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTIENSNQNRELMAVHLKTLLKVQT", "length": 142, "header": "tr|A0A4X1VIC5-1|A0A4X1VIC5_PIG Isoform 1 of Proline rich nuclear receptor coactivator 1 OS=Sus scrofa OX=9823 GN=PNRC1 PE=4 SV=1 CANONICAL=A0A4X1VIC5-1" }, "isoforms": [ { "isoform_ac": "A0A287A2S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2S5/entry", "sequence": { "sequence": "MTVVSVPQREPLVLGSRLAPMGFSARGYFGALPMVSTAPPPLPRIPDPRALPPTLFLPHFLGGDGPCLTPQPRAPAPLPNCSLASTGGTPRAAPKKRRKKKVRASPSGQLPSRFHQYQQHRPSLEGVRSPATGHSGEQQVPDQAAAWASAPATATRTEEASLFLGPRPPAAPGQPSFRREVLKSKMGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDIIQKQEKKPLKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTIENSNQNRELMAVHLKTLLKVQT", "length": 327, "header": "tr|A0A287A2S5-1|A0A287A2S5_PIG Computationally mapped isoform of Proline rich nuclear receptor coactivator 1 OS=Sus scrofa OX=9823 GN=PNRC1 PE=4 SV=1 CANONICAL=A0A4X1VIC5-1" }, "locus": { "chromosome": "1", "start_pos": 57131420, "end_pos": 57128428, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041320.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041320.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038219.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038219.1" } ] } }, { "isoform_ac": "A0A4X1VIC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5/entry", "sequence": { "sequence": "MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDIIQKQEKKPLKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTIENSNQNRELMAVHLKTLLKVQT", "length": 142, "header": "tr|A0A4X1VIC5-1|A0A4X1VIC5_PIG Isoform 1 of Proline rich nuclear receptor coactivator 1 OS=Sus scrofa OX=9823 GN=PNRC1 PE=4 SV=1 CANONICAL=A0A4X1VIC5-1" }, "locus": { "chromosome": "1", "start_pos": 57131420, "end_pos": 57130995, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027965.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027965.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000025223.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106508885", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106508885", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q12796-1", "protein_name": "Proline-rich nuclear receptor coactivator 1", "gene_name": "PNRC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHFLGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQHRPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT", "length": 327 }, "evidence": [ { "id": "A0A4X1VIC5", "url": "https://omabrowser.org/oma/group/A0A4X1VIC5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q63647-1", "protein_name": "Proline-rich nuclear receptor coactivator 1", "gene_name": "Pnrc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVVSVPQRDLALGGRLAPLGSLGALPMVSPAPPPLPRLPDPRALPPTLFLPHFLGGDGPCLARASHRCTVQLQLGPGRCPTAAPKKRRKKKVRASPAGQLPSRFHQFQQHRPSLEGGRSPVPGPIAAQEERGPGATALLYRQPPLAKEVLKSKMGKSEKISPPHSQLVHGIHLCEQPKISRQKSKFNLPLTKITSAKRNENDFWQDSASSDRMQKQEKKPLKNTENIKNNHLKKSAFLTEGSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTTENPSQSRELMAVHLKTLLKVQT", "length": 296 }, "evidence": [ { "id": "A0A4X1VIC5", "url": "https://omabrowser.org/oma/group/A0A4X1VIC5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA metabolic process", "id": "GO:0016071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016071", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIC5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VG44-1", "uniprot_ac": "A0A4X1VG44", "uniprot_id": "A0A4X1VG44_PIG", "mass": { "chemical_mass": 8225.0, "monoisotopic_mass": 8225.0 }, "refseq": {}, "gene_names": [ { "name": "PATE2", "type": "recommended", "evidence": [ { "id": "A0A4X1VG44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44" } ] } ], "protein_names": [ { "name": "Prostate and testis expressed 2", "type": "synonym", "evidence": [ { "id": "A0A4X1VG44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PATE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44", "locus": { "chromosome": "9", "start_pos": 52930887, "end_pos": 52933470, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038721", "url": "https://www.ensembl.org/id/ENSSSCG00000038721" } ] } } ], "crossref": [ { "id": "A0A4X1VG44", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VG44", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038721", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038721", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23578", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23578", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102158897", "url": "https://www.ncbi.nlm.nih.gov/gene/102158897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102158897", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LKHKQSC", "url": "https://omabrowser.org/oma/group/LKHKQSC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A8B9", "url": "https://www.orthodb.org/?gene=A0A287A8B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47884", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47884", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47884:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47884:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A8B9", "url": "https://www.uniprot.org/uniprotkb/A0A287A8B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VG44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VG44-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVLFLLCIVFLVCLSKGEFYEHLIGRSMYFYSILSCMTNCEDINFLSFDKRTELICCKNKNYCNLPEGV", "length": 70, "header": "tr|A0A4X1VG44-1|A0A4X1VG44_PIG Isoform 1 of Prostate and testis expressed 2 OS=Sus scrofa OX=9823 GN=PATE2 PE=4 SV=1 CANONICAL=A0A4X1VG44-1" }, "isoforms": [ { "isoform_ac": "A0A287A8B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8B9/entry", "sequence": { "sequence": "MFVLFLLCIVFLVCLSKGEFYEHLIEPSVMCYKCRKYHLGMCYEAMRSCVLKYQQTCAVKNIYLLTPKGRSMYFYSILSCMTNCEDINFLSFDKRTELICCKNKNYCNLPEGV", "length": 113, "header": "tr|A0A287A8B9-1|A0A287A8B9_PIG Computationally mapped isoform of Prostate and testis expressed 2 OS=Sus scrofa OX=9823 GN=PATE2 PE=4 SV=1 CANONICAL=A0A4X1VG44-1" }, "locus": { "chromosome": "9", "start_pos": 52933256, "end_pos": 52931891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049939.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049939.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040125.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040125.1" } ] } }, { "isoform_ac": "A0A4X1VG44-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44/entry", "sequence": { "sequence": "MFVLFLLCIVFLVCLSKGEFYEHLIGRSMYFYSILSCMTNCEDINFLSFDKRTELICCKNKNYCNLPEGV", "length": 70, "header": "tr|A0A4X1VG44-1|A0A4X1VG44_PIG Isoform 1 of Prostate and testis expressed 2 OS=Sus scrofa OX=9823 GN=PATE2 PE=4 SV=1 CANONICAL=A0A4X1VG44-1" }, "locus": { "chromosome": "9", "start_pos": 52933256, "end_pos": 52931891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081317.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081317.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070994.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070994.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102158897", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158897", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3UW31-1", "protein_name": "Prostate and testis expressed protein 2", "gene_name": "Pate2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFVLVMICLFCQYWGVLNELEEEDRGLLCYKCKKYHLGLCYGIMTSCVPNHRQTCAAENFYILTKKGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSNYCNLPMGL", "length": 111 }, "evidence": [ { "id": "A0A4X1VG44", "url": "https://omabrowser.org/oma/group/A0A4X1VG44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UY27-1", "protein_name": "Prostate and testis expressed protein 2", "gene_name": "PATE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLVLFLLGTVFLLCPYWGELHDPIKATEIMCYECKKYHLGLCYGVMTSCSLKHKQSCAVENFYILTRKGQSMYHYSKLSCMTSCEDINFLGFTKRVELICCDHSNYCNLPEGV", "length": 113 }, "evidence": [ { "id": "A0A4X1VG44", "url": "https://omabrowser.org/oma/group/A0A4X1VG44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VG44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VG44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VIP2-1", "uniprot_ac": "A0A4X1VIP2", "uniprot_id": "A0A4X1VIP2_PIG", "mass": { "chemical_mass": 62656.0, "monoisotopic_mass": 62656.0 }, "refseq": { "ac": "XP_020945335", "name": "heterogeneous nuclear ribonucleoprotein Q isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945335" }, "gene_names": [ { "name": "SYNCRIP", "type": "recommended", "evidence": [ { "id": "A0A4X1VIP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ] }, { "name": "SYNCRIP", "type": "synonym", "evidence": [ { "id": "XP_020945335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945335" } ] } ], "protein_names": [ { "name": "Synaptotagmin binding cytoplasmic RNA interacting protein", "type": "synonym", "evidence": [ { "id": "A0A4X1VIP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2/entry#names_and_taxonomy" } ] }, { "name": "heterogeneous nuclear ribonucleoprotein Q isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020945335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945335" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYNCRIP", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2", "locus": { "chromosome": "1", "start_pos": 54563114, "end_pos": 54598407, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004294", "url": "https://www.ensembl.org/id/ENSSSCG00000004294" } ] } } ], "crossref": [ { "id": "A0A4X1VIP2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VIP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004294", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004294", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12483", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12483", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12489", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12489", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12495", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12495", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154370", "url": "https://www.ncbi.nlm.nih.gov/gene/100154370", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006535", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006535", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154370", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VEP2", "url": "https://www.orthodb.org/?gene=A0A4X1VEP2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18360", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18360", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020945335", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945335", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQG4", "url": "https://www.uniprot.org/uniprotkb/A0A287AQG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VEP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8P8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8P8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD37", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLD9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMF3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ", "length": 562, "header": "tr|A0A4X1VIP2-1|A0A4X1VIP2_PIG Isoform 1 of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "isoforms": [ { "isoform_ac": "A0A287AQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQG4/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRFCALLIPCVEYVCTLHNTDLLQFSAAGLKCYFTTYFLFPLKNKKLVHVVSLSW", "length": 601, "header": "tr|A0A287AQG4-1|A0A287AQG4_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=2 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54568832, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063076.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063076.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046283.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046283.2" } ] } }, { "isoform_ac": "A0A4X1VEP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VEP2/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTSNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK", "length": 623, "header": "tr|A0A4X1VEP2-1|A0A4X1VEP2_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54569639, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004748.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004748.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004639.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004639.3" } ] } }, { "isoform_ac": "A0A4X1VIP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ", "length": 562, "header": "tr|A0A4X1VIP2-1|A0A4X1VIP2_PIG Isoform 1 of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54567711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055678.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055678.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055565.1" } ] } }, { "isoform_ac": "A0A8W4F8P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8P8/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTSNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK", "length": 616, "header": "tr|A0A8W4F8P8-1|A0A8W4F8P8_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54569639, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104887.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104887.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075647.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075647.1" } ] } }, { "isoform_ac": "A0A8W4FD37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD37/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV", "length": 337, "header": "tr|A0A8W4FD37-1|A0A8W4FD37_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54570225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097449.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097449.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077310.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077310.1" } ] } }, { "isoform_ac": "A0A8W4FLD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLD9/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ", "length": 465, "header": "tr|A0A8W4FLD9-1|A0A8W4FLD9_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54567711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105495.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105495.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079723.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079723.1" } ] } }, { "isoform_ac": "A0A8W4FMF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMF3/entry", "sequence": { "sequence": "MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPDEAKIKIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ", "length": 524, "header": "tr|A0A8W4FMF3-1|A0A8W4FMF3_PIG Computationally mapped isoform of Synaptotagmin binding cytoplasmic RNA interacting protein OS=Sus scrofa OX=9823 GN=SYNCRIP PE=1 SV=1 CANONICAL=A0A4X1VIP2-1" }, "locus": { "chromosome": "1", "start_pos": 54596033, "end_pos": 54567711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098614.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098614.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080083.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080083.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154370", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "mRNA 5'-UTR binding", "id": "GO:0048027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048027", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "GAIT complex", "id": "GO:0097452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097452", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "CRD-mediated mRNA stability complex", "id": "GO:0070937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070937", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "CRD-mediated mRNA stabilization", "id": "GO:0070934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070934", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "positive regulation of cytoplasmic translation", "id": "GO:2000767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000767", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" }, { "name": "negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay", "id": "GO:1900152", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900152", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VIP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1VIP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VIP2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 241, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 90, "end_pos": 92 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1V1S1-1", "uniprot_ac": "A0A4X1V1S1", "uniprot_id": "A0A4X1V1S1_PIG", "mass": { "chemical_mass": 67794.0, "monoisotopic_mass": 67794.0 }, "refseq": {}, "gene_names": [ { "name": "EPB42", "type": "recommended", "evidence": [ { "id": "A0A4X1V1S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ] } ], "protein_names": [ { "name": "Erythrocyte membrane protein band 4.2", "type": "synonym", "evidence": [ { "id": "A0A4X1V1S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJX0", "url": "https://www.uniprot.org/uniprotkb/A0A287BJX0#function" }, { "database": "UniProtKB", "id": "ARBA00055437", "url": "https://www.uniprot.org/uniprotkb/ARBA00055437#function" }, { "database": "UniProtKB", "id": "A0A4X1V764", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V764#function" }, { "database": "UniProtKB", "id": "A0A8D0TJ83", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TJ83#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EPB42", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1", "locus": { "chromosome": "1", "start_pos": 128253031, "end_pos": 128231997, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004714", "url": "https://www.ensembl.org/id/ENSSSCG00000004714" } ] } } ], "crossref": [ { "id": "A0A4X1V1S1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1V1S1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004714", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004714", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152957", "url": "https://www.ncbi.nlm.nih.gov/gene/100152957", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152957", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152957", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NPWGRED", "url": "https://omabrowser.org/oma/group/NPWGRED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1V764", "url": "https://www.orthodb.org/?gene=A0A4X1V764", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11590", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11590", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11590:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11590:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00868", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00868", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BJX0", "url": "https://www.uniprot.org/uniprotkb/A0A287BJX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V1S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V764", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V764-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V764-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TJ83", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TJ83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TJ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TJ83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQGLGIKCCDFQAARNNAEHHTQDISSQRLTVRRGQPFTISLHFQAPVHTFLSTMKKIVLVAQTEDAVFLGNKAQCSEYVLNQNGLIFTGTADCIEAMPWDFGQFEEDVIDLSLKLLSVNKQVEEWGDPVHVAHTLGTLLQVLKEKSVLPTSQIQTAQEKALLYKRRGSAPILRQWLTGLGRPVYESQAWVLAAVTCTVLRGLGIPARVVTTFTSAQGTGGSLLVDEFYSKEGLQNGEGQRGRIWIFQTSTECWMKRPALPQGYDGWQILHPSAPSGVRVLGECDLVPVRAVKEGTVGLTPAVLDIFASVNASCVVWKCREDGTLELTESNTKYCGNNISTKVVASDRCEDITQNYKYPEGSPKEKKVLEKVWKNRRKHGKVRDVYPPSLETGDPLHFFLEAPSSLPLGGDARISVNLINPNDYEKEVKLALGLQAVYYNGVLAATLWKDQFLLTVEANSAKKRHSFLSFSNFEQNPPENTLLRLTAMATHSTLTCFDQKDIAICRPQLAIEMPETAVQHQPLTASVSIHNTLDAPLNDCVISIFGRGLIYREKSYRLSSVQPGRTVCTKLQFTPMHVGLQRLTVEMDCNMFQNLTNFRSITVVAPEPPA", "length": 611, "header": "tr|A0A4X1V1S1-1|A0A4X1V1S1_PIG Isoform 1 of Erythrocyte membrane protein band 4.2 OS=Sus scrofa OX=9823 GN=EPB42 PE=1 SV=1 CANONICAL=A0A4X1V1S1-1" }, "isoforms": [ { "isoform_ac": "A0A287BJX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJX0/entry", "sequence": { "sequence": "TTGLGIKCCDFQAARNNAEHHTQDISSQRLTVRRGQPFTISLHFQAPVHTFLSTMKKIVLVAQTGEQPSQDNRTQATFSISSLGDAKSWSARVKERDDQSWTISVTTPADAVIGHYSLLLQASGREQCLGQFTLLFNPWSQEDAVFLGNKAQCSEYVLNQNGLIFTGTADCIEAMPWDFGQFEEDVIDLSLKLLSVNKQVEEWGDPVHVAHTLGTLLQVLKEKSVLPTSQIQTAQEKALLYKRRGSAPILRQWLTGLGRPVYESQAWVLAAVTCTVLRGLGIPARVVTTFTSAQGTGGSLLVDEFYSKEGLQNGEGQRGRIWIFQTSTECWMKRPALPQGYDGWQILHPSAPSGVRGSPKEKKVLEKVWKNRRKHGKVRDVYPPSLETGDPLHFFLEAPSSLPLGGDARISVNLINPNDYEKEVKLALGLQAVYYNGVLAATLWKDQFLLTVEANSAKKRHSFLSFSNFEQNPPENTLLRLTAMATHSTLTCFDQKDIAICRPQLAIEMPETAVQHQPLTASVSIHNTLDAPLNDCVISIFGRGLIYREKSYRLSSVQPGRTVCTKLQFTPMHVGLQRLTVEMDCNMFQNLTNFRSITVVAPEPPA", "length": 606, "header": "tr|A0A287BJX0-1|A0A287BJX0_PIG Computationally mapped isoform of Protein 4.2 OS=Sus scrofa OX=9823 GN=EPB42 PE=1 SV=2 CANONICAL=A0A4X1V1S1-1" }, "locus": { "chromosome": "1", "start_pos": 128252610, "end_pos": 128235765, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057279.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057279.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056893.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056893.2" } ] } }, { "isoform_ac": "A0A4X1V1S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1/entry", "sequence": { "sequence": "MGQGLGIKCCDFQAARNNAEHHTQDISSQRLTVRRGQPFTISLHFQAPVHTFLSTMKKIVLVAQTEDAVFLGNKAQCSEYVLNQNGLIFTGTADCIEAMPWDFGQFEEDVIDLSLKLLSVNKQVEEWGDPVHVAHTLGTLLQVLKEKSVLPTSQIQTAQEKALLYKRRGSAPILRQWLTGLGRPVYESQAWVLAAVTCTVLRGLGIPARVVTTFTSAQGTGGSLLVDEFYSKEGLQNGEGQRGRIWIFQTSTECWMKRPALPQGYDGWQILHPSAPSGVRVLGECDLVPVRAVKEGTVGLTPAVLDIFASVNASCVVWKCREDGTLELTESNTKYCGNNISTKVVASDRCEDITQNYKYPEGSPKEKKVLEKVWKNRRKHGKVRDVYPPSLETGDPLHFFLEAPSSLPLGGDARISVNLINPNDYEKEVKLALGLQAVYYNGVLAATLWKDQFLLTVEANSAKKRHSFLSFSNFEQNPPENTLLRLTAMATHSTLTCFDQKDIAICRPQLAIEMPETAVQHQPLTASVSIHNTLDAPLNDCVISIFGRGLIYREKSYRLSSVQPGRTVCTKLQFTPMHVGLQRLTVEMDCNMFQNLTNFRSITVVAPEPPA", "length": 611, "header": "tr|A0A4X1V1S1-1|A0A4X1V1S1_PIG Isoform 1 of Erythrocyte membrane protein band 4.2 OS=Sus scrofa OX=9823 GN=EPB42 PE=1 SV=1 CANONICAL=A0A4X1V1S1-1" }, "locus": { "chromosome": "1", "start_pos": 128252610, "end_pos": 128232049, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082424.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082424.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073012.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073012.1" } ] } }, { "isoform_ac": "A0A4X1V764-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V764/entry", "sequence": { "sequence": "MGQGLGIKCCDFQAARNNAEHHTQDISSQRLTVRRGQPFTISLHFQAPVHTFLSTMKKIVLVAQTGEQPSQDNRTQATFSISSLGDAKSWSARVKERDDQSWTISVTTPADAVIGHYSLLLQASGREQCLGQFTLLFNPWSQEDAVFLGNKAQCSEYVLNQNGLIFTGTADCIEAMPWDFGQFEEDVIDLSLKLLSVNKQVEEWGDPVHVAHTLGTLLQVLKEKSVLPTSQIQTAQEKALLYKRRGSAPILRQWLTGLGRPVYESQAWVLAAVTCTVLRGLGIPARVVTTFTSAQGTGGSLLVDEFYSKEGLQNGEGQRGRIWIFQTSTECWMKRPALPQGYDGWQILHPSAPSGVRVLGECDLVPVRAVKEGTVGLTPAVLDIFASVNASCVVWKCREDGTLELTESNTKYCGNNISTKVVASDRCEDITQNYKYPEGSPKEKKVLEKVWKNRRKHGKVRDVYPPSLETGDPLHFFLEAPSSLPLGGDARISVNLINPNDYEKEVKLALGLQAVYYNGVLAATLWKDQFLLTVEANSAKKRHSFLSFSNFEQNPPENTLLRLTAMATHSTLTCFDQKDIAICRPQLAIEMPETAVQHQPLTASVSIHNTLDAPLNDCVISIFGRGLIYREKSYRLSSVQPGRTVCTKLQFTPMHVGLQRLTVEMDCNMFQNLTNFRSITVVAPEPPA", "length": 688, "header": "tr|A0A4X1V764-1|A0A4X1V764_PIG Computationally mapped isoform of Protein 4.2 OS=Sus scrofa OX=9823 GN=EPB42 PE=1 SV=1 CANONICAL=A0A4X1V1S1-1" }, "locus": { "chromosome": "1", "start_pos": 128252610, "end_pos": 128232049, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005206.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005206.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005080.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005080.3" } ] } }, { "isoform_ac": "A0A8D0TJ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TJ83/entry", "sequence": { "sequence": "QGLGIKCCDFQAARNNAEHHTQDISSQRLTVRRGQPFTISLHFQAPVHTFLSTMKKIVLVAQTGEQPSQDNRTQATFSISSLGDAKSWSARVKERDDQSWTISVTTPADAVIGHYSLLLQASGREQCLGQFTLLFNPWSQEDAVFLGNKAQCSEYVLNQNGLIFTGTADCIEAMPWDFGQFEEDVIDLSLKLLSVNKQVEEWGDPVHVAHTLGTLLQVLKEKSVLPTSQIQTAQEKALLYKRRGSAPILRQWLTGLGRPVYESQAWVLAAVTCTVLRGLGIPARVVTTFTSAQGTGGSLLVDEFYSKEGLQNGEGQRGRIWIFQTSTECWMKRPALPQGYDGWQILHPSAPSGVRVLGECDLVPVRAVKEGTVGLTPAVLDIFASVNASCVVWKCREDGTLELTESNTKYCGNNISTKVVASDRCEDITQNYKYPEGSPKEKKVLEKVWKNRRKHGKVRDVYPPSLETGDPLHFFLEAPSSLPLGGDARISVNLINPNDYEKEVKLALGLQAVYYNGVLAATLWKDQFLLTVEANSAKKRHSFLSFSNFEQNPPENTLLRLTAMATHSTLTCFDQKDIAICRPQLAIEMPETAVQHQPLTASVSIHNTLDAPLNDCVISIFGRGLIYREKSYRLSSVQPGRTVCTKLQFTPMHVGLQRLTVEMDCNMFQNLTNFRSITVVAPEPPA", "length": 686, "header": "tr|A0A8D0TJ83-1|A0A8D0TJ83_PIG Computationally mapped isoform of Protein 4.2 OS=Sus scrofa OX=9823 GN=EPB42 PE=1 SV=1 CANONICAL=A0A4X1V1S1-1" }, "locus": { "chromosome": "1", "start_pos": 128252610, "end_pos": 128235287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077250.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077250.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067997.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152957", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152957", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O46510-1", "protein_name": "Protein 4.2", "gene_name": "EPB42", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGQGLGIKSCDFQAARNNAEHHTNDISSQRLFVRRGQPFTISLHFQAPVHTFLRALKKVALIAQTGKQPSKANGTQATFSVSSLGDRKWWSAMVEERDDQSWTISVTTPADAIIGHYSLLLQISGRKQCLGQFTLLFNPWNREDAVFLGNEAQRKEYLLNQNGLIFLGTADCIQAEPWDFGQLEEDVIDLGLSLLTVDNQVEKWGNPVHVARVLGALLHILKEKSVLPTAKIQTTEERALLNKRRGSAPILRQWVTGHGRPVYEGQAWVLAAVACTVLRGLGIPARVVTTFTSAQGTGGDLLVNEYYNEEGLQNGEDNRGRAWIFQTSTECWMARPDLLEVYDGWQILYPSALKGGEVLEACDLVPVRAVKEGIVWLTPAASDIFASINASCVVWKCGEDGTLELTDSNTKYFGNNISTKNVDCDCHEDITQNYKYPEGSSQEKMVLEKVQKYRMKHKNDGIYPPCCETDDPLHLFLKAPSSLALGKNVEISVNLLNPTDQEKEVQLAIGLQAMYYNGVLAAKLWRKNFVLILSANSAKKISTSLFNSNFEQSLPENSFLRLTAMATHSSLPCFAQQDIAIRRPHLAIEMPETAEQHQTLIALVSIHNPLDVPLEDCVISIFGKGLIHREKSYRVNSVQPRNTLRTQLKFVPMKVGCQRLTVEMDCNMFQNLTNFRTVMVVAPKSPA", "length": 687 }, "evidence": [ { "id": "A0A4X1V1S1", "url": "https://omabrowser.org/oma/group/A0A4X1V1S1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P16452-1", "protein_name": "Protein 4.2", "gene_name": "EPB42", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQALGIKSCDFQAARNNEEHHTKALSSRRLFVRRGQPFTIILYFRAPVRAFLPALKKVALTAQTGEQPSKINRTQATFPISSLGDRKWWSAVVEERDAQSWTISVTTPADAVIGHYSLLLQVSGRKQLLLGQFTLLFNPWNREDAVFLKNEAQRMEYLLNQNGLIYLGTADCIQAESWDFGQFEGDVIDLSLRLLSKDKQVEKWSQPVHVARVLGALLHFLKEQRVLPTPQTQATQEGALLNKRRGSVPILRQWLTGRGRPVYDGQAWVLAAVACTVLRCLGIPARVVTTFASAQGTGGRLLIDEYYNEEGLQNGEGQRGRIWIFQTSTECWMTRPALPQGYDGWQILHPSAPNGGGVLGSCDLVPVRAVKEGTLGLTPAVSDLFAAINASCVVWKCCEDGTLELTDSNTKYVGNNISTKGVGSDRCEDITQNYKYPEGSLQEKEVLERVEKEKMEREKDNGIRPPSLETASPLYLLLKAPSSLPLRGDAQISVTLVNHSEQEKAVQLAIGVQAVHYNGVLAAKLWRKKLHLTLSANLEKIITIGLFFSNFERNPPENTFLRLTAMATHSESNLSCFAQEDIAICRPHLAIKMPEKAEQYQPLTASVSLQNSLDAPMEDCVISILGRGLIHRERSYRFRSVWPENTMCAKFQFTPTHVGLQRLTVEVDCNMFQNLTNYKSVTVVAPELSA", "length": 691 }, "evidence": [ { "id": "A0A4X1V1S1", "url": "https://omabrowser.org/oma/group/A0A4X1V1S1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P49222-1", "protein_name": "Protein 4.2", "gene_name": "Epb42", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQALSIKSCDFHAAENNEEHYTKAISSQHLTLRRGQSFTITLNFRAPTHTFLSALKKVALIAQTGEQPSKINKTQAIFPISSLGDQKGWSAAVEERDAQHWTVSVTTPVDAVIGHYSLLLQVSGKKQYPLGQFTLLFNPWNRDDAVFLQNEAERTEYVLNQNGFIYLGTADCIQEEPWDFGQFEKDVMDLSLKLLSMDKQVKDWNQPAHVARVVGALLHALKKKSVLPISQTQAAQEGALLYKRRGSVPILRQWLTGQGRAVYETQAWVSAAVACTVLRCLGIPARVVTTFDSAQGTVGSLLVDEYYNEEGLQNGEGQRGHIWVFQTSVECWMNRPDLSQGYGGWQILHPRAPNGAGVLGSCSLVPVRAVKEGELQLDPAVPELFAAVNASCVVWKCCEDGKLELTNSNRKDVGNCISTKVVGSDRCEDITQNYKYPAGSLQEKEVLEKVQKERLKLGKDNGMCPPSCEPWDPLHMFFEASSSIPLSGDGQLSVTLINPTDEEKKVHLVIGAQALYYNGVLAAGLWSKKQLFMLKPNQVMRLSTNLSFSCFEQTPPENSFLRVTAMARYSHTSLSCFAQENMAIGKPDLIIEMPKRAAQYRPLTVSVRMHNSLEAPMQNCIISIFGRGLIHREKRYGLGSLWPGSSLHTQFQFTPTHLGLQRLTVEVDCDMFQNLTGYRSVLVVAPEVSV", "length": 691 }, "evidence": [ { "id": "A0A4X1V1S1", "url": "https://omabrowser.org/oma/group/A0A4X1V1S1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "erythrocyte maturation", "id": "GO:0043249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043249", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "peptide cross-linking", "id": "GO:0018149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018149", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "cell periphery", "id": "GO:0071944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "cortical cytoskeleton", "id": "GO:0030863", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030863", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" }, { "name": "ankyrin-1 complex", "id": "GO:0170014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0170014", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-glutamine gamma-glutamyltransferase activity", "id": "GO:0003810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003810", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1S1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 595, "end_pos": 597, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1V1S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1S1" }, { "id": "SM00460", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00460" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transglutaminase-like", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 275, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 }, { "start_pos": 339, "end_pos": 341 }, { "start_pos": 595, "end_pos": 597 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VFK6-1", "uniprot_ac": "A0A4X1VFK6", "uniprot_id": "A0A4X1VFK6_PIG", "mass": { "chemical_mass": 2867.0, "monoisotopic_mass": 2867.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Bridging integrator 3", "type": "synonym", "evidence": [ { "id": "A0A4X1VFK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VFK6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6", "locus": {} } ], "crossref": [ { "id": "A0A4X1VFK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VFK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1VFK6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VFK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSWIPFKIGQPKKQIVPKTVSNVLQ", "length": 25, "header": "tr|A0A4X1VFK6-1|A0A4X1VFK6_PIG Isoform 1 of Bridging integrator 3 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VFK6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VFK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6/entry", "sequence": { "sequence": "MSWIPFKIGQPKKQIVPKTVSNVLQ", "length": 25, "header": "tr|A0A4X1VFK6-1|A0A4X1VFK6_PIG Isoform 1 of Bridging integrator 3 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1VFK6-1" }, "locus": { "chromosome": "14", "start_pos": 6923273, "end_pos": 6896297, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088696.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088696.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065741.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065741.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VFK6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VFK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W726-1", "uniprot_ac": "A0A4X1W726", "uniprot_id": "A0A4X1W726_PIG", "mass": { "chemical_mass": 15871.0, "monoisotopic_mass": 15871.0 }, "refseq": {}, "gene_names": [ { "name": "EVA1A", "type": "recommended", "evidence": [ { "id": "A0A4X1W726", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726" } ] } ], "protein_names": [ { "name": "Eva-1 homolog A, regulator of programmed cell death", "type": "synonym", "evidence": [ { "id": "A0A4X1W726", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W726", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EVA1A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726", "locus": { "chromosome": "3", "start_pos": 67734222, "end_pos": 67680736, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035958", "url": "https://www.ensembl.org/id/ENSSSCG00000035958" } ] } } ], "crossref": [ { "id": "A0A4X1W726", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W726", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035958", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035958", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VMKISCH", "url": "https://omabrowser.org/oma/group/VMKISCH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48422:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48422:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14851", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14851", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B6L2", "url": "https://www.uniprot.org/uniprotkb/A0A287B6L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W726", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W726-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQDRESSSNSSDSEDGSSDAASDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 139, "header": "tr|A0A4X1W726-1|A0A4X1W726_PIG Isoform 1 of Eva-1 homolog A, regulator of programmed cell death OS=Sus scrofa OX=9823 GN=EVA1A PE=3 SV=1 CANONICAL=A0A4X1W726-1" }, "isoforms": [ { "isoform_ac": "A0A287B6L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6L2/entry", "sequence": { "sequence": "MRLPFCYNAELVIPEHVDMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQDRESSSNSSDSEDGSSDAASDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 157, "header": "tr|A0A287B6L2-1|A0A287B6L2_PIG Computationally mapped isoform of Eva-1 homolog A, regulator of programmed cell death OS=Sus scrofa OX=9823 GN=EVA1A PE=3 SV=2 CANONICAL=A0A4X1W726-1" }, "locus": { "chromosome": "3", "start_pos": 67729668, "end_pos": 67710947, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050083.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050083.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051942.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051942.2" } ] } }, { "isoform_ac": "A0A4X1W726-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726/entry", "sequence": { "sequence": "MALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVMRISCHTDCRQPPQKKFLQDRESSSNSSDSEDGSSDAASDISIRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 139, "header": "tr|A0A4X1W726-1|A0A4X1W726_PIG Isoform 1 of Eva-1 homolog A, regulator of programmed cell death OS=Sus scrofa OX=9823 GN=EVA1A PE=3 SV=1 CANONICAL=A0A4X1W726-1" }, "locus": { "chromosome": "3", "start_pos": 67729668, "end_pos": 67711002, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039996.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039996.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033017.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033017.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W726", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H0P2-1", "protein_name": "Protein eva-1 homolog A", "gene_name": "Eva1a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTYEAAPQPQPEAAEPLEMALLSSVLAACSYISENPERAALYFVSGVCIGLFLTLAALVMRISCHTDCRRGPRRRCLQDHESSSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 157 }, "evidence": [ { "id": "A0A4X1W726", "url": "https://omabrowser.org/oma/group/A0A4X1W726/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08CB3-1", "protein_name": "Protein eva-1 homolog A", "gene_name": "Eva1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVTAFLNERQATTEEMALVSNALAAYSFIADQPERAALYFVCGVCLGLVLTLIALVVQISCRTDCKTQQAPKKTGKTVENTSDTSDSDSDWDNTSDLSARRHRRFERTLGNVFTSAEELERAQRLEERERIIREIWMNGQPDMPGTRSLNRYY", "length": 153 }, "evidence": [ { "id": "A0A4X1W726", "url": "https://omabrowser.org/oma/group/A0A4X1W726/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91WM6-1", "protein_name": "Protein eva-1 homolog A", "gene_name": "Eva1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLPLSPSTEPVATEPLGMALLSSILAAWSYISENPERAALYFVSGVCIGLFLTLAALVMRISCHTDCRRGPRRRCLQDRECSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 156 }, "evidence": [ { "id": "A0A4X1W726", "url": "https://omabrowser.org/oma/group/A0A4X1W726/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H8M9-1", "protein_name": "Protein eva-1 homolog A", "gene_name": "EVA1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLPLSHSPEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIRISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY", "length": 152 }, "evidence": [ { "id": "A0A4X1W726", "url": "https://omabrowser.org/oma/group/A0A4X1W726/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W726", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W726", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W726" }, { "id": "PF14851", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14851" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EVA1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 139, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1VR16-1", "uniprot_ac": "A0A4X1VR16", "uniprot_id": "A0A4X1VR16_PIG", "mass": { "chemical_mass": 31347.0, "monoisotopic_mass": 31347.0 }, "refseq": {}, "gene_names": [ { "name": "NUP43", "type": "recommended", "evidence": [ { "id": "A0A4X1VR16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ] } ], "protein_names": [ { "name": "Nucleoporin 43", "type": "synonym", "evidence": [ { "id": "A0A4X1VR16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUP43", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16", "locus": { "chromosome": "1", "start_pos": 16267624, "end_pos": 16249546, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004105", "url": "https://www.ensembl.org/id/ENSSSCG00000004105" } ] } } ], "crossref": [ { "id": "A0A4X1VR16", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1VR16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004105", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004105", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154567", "url": "https://www.ncbi.nlm.nih.gov/gene/100154567", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F1S7T5", "url": "https://www.ebi.ac.uk/intact/interactors/id:F1S7T5*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154567", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154567", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HDGDVMD", "url": "https://omabrowser.org/oma/group/HDGDVMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BM32", "url": "https://www.orthodb.org/?gene=A0A287BM32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22652:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22652:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-141430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-141444", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159227", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159227", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-159236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855170", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855170", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855196", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855196", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-191859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2500257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3108214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3232142", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3232142", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3301854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3301854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371453", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4085377", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085377", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4551638", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551638", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4570464", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4570464", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4615885", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4615885", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9615933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9615933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9648025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BM32", "url": "https://www.uniprot.org/uniprotkb/A0A287BM32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BM32-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VR16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWI0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7T5", "url": "https://www.uniprot.org/uniprotkb/F1S7T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7T5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPLSSGSLQTAETFATGSWDNEENYVSLWSIGDLGNVDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWTTAHYHAGPGSPSCSSAPCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIVWEVHFHPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQTNVHQSLISSWLSTDPARDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 284, "header": "tr|A0A4X1VR16-1|A0A4X1VR16_PIG Isoform 1 of Nucleoporin 43 OS=Sus scrofa OX=9823 GN=NUP43 PE=1 SV=1 CANONICAL=A0A4X1VR16-1" }, "isoforms": [ { "isoform_ac": "A0A287BM32-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM32/entry", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPLSSGSLQTAETFATGSWDNEENYVSLWSIGDLGNVDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWTTAHYHAGPGSPSCSSAPCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRAPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQTNVHQSLISSWLSTDPARDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 380, "header": "tr|A0A287BM32-1|A0A287BM32_PIG Computationally mapped isoform of Nucleoporin 43 OS=Sus scrofa OX=9823 GN=NUP43 PE=1 SV=1 CANONICAL=A0A4X1VR16-1" }, "locus": { "chromosome": "1", "start_pos": 16265315, "end_pos": 16251840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052785.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052785.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057685.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057685.1" } ] } }, { "isoform_ac": "A0A4X1VR16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16/entry", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPLSSGSLQTAETFATGSWDNEENYVSLWSIGDLGNVDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWTTAHYHAGPGSPSCSSAPCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIVWEVHFHPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQTNVHQSLISSWLSTDPARDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 284, "header": "tr|A0A4X1VR16-1|A0A4X1VR16_PIG Isoform 1 of Nucleoporin 43 OS=Sus scrofa OX=9823 GN=NUP43 PE=1 SV=1 CANONICAL=A0A4X1VR16-1" }, "locus": { "chromosome": "1", "start_pos": 16265315, "end_pos": 16251840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079902.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079902.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060806.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060806.1" } ] } }, { "isoform_ac": "A0A5G2QWI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWI0/entry", "sequence": { "sequence": "MPSLCHRKSARPAGDRYLRGACRRRRPSPRALGTMRKIMFHCGLLEIWGTWTLMEDLKETISYCVTSDTMFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWTTAHYHAGPGSPSCSSAPCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRAPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQTNVHQSLISSWLSTDPARDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 369, "header": "tr|A0A5G2QWI0-1|A0A5G2QWI0_PIG Computationally mapped isoform of Nucleoporin 43 OS=Sus scrofa OX=9823 GN=NUP43 PE=1 SV=1 CANONICAL=A0A4X1VR16-1" }, "locus": { "chromosome": "1", "start_pos": 16265315, "end_pos": 16251853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076736.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076736.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068505.1" } ] } }, { "isoform_ac": "F1S7T5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7T5/entry", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPLSSGSLQTAETFATGSWDNEENYVSLWSIGDLGNVDSDGGFEGDHQLLCDIRHHGDVMDLQTLSVSQQWTTAHYHAGPGSPSCSSAPCTGVVCNSPEIVTVGEDGRINLFRADYKEAIKTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRAPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQTNVHQSLISSWLSTDPARDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 354, "header": "tr|F1S7T5-1|F1S7T5_PIG Computationally mapped isoform of Nucleoporin 43 OS=Sus scrofa OX=9823 GN=NUP43 PE=1 SV=2 CANONICAL=A0A4X1VR16-1" }, "locus": { "chromosome": "1", "start_pos": 16265315, "end_pos": 16251840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004540.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004540.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004438.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004438.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154567", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154567", "resource": "KEGG Pathway" }, { "id": "R-SSC-141430", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "resource": "Reactome", "description": "Inactivation of APC/C via direct inhibition of the APC/C complex" }, { "id": "R-SSC-141444", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "resource": "Reactome", "description": "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" }, { "id": "R-SSC-159227", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159227", "resource": "Reactome", "description": "Transport of the SLBP independent Mature mRNA" }, { "id": "R-SSC-159230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "resource": "Reactome", "description": "Transport of the SLBP Dependant Mature mRNA" }, { "id": "R-SSC-159231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "resource": "Reactome", "description": "Transport of Mature mRNA Derived from an Intronless Transcript" }, { "id": "R-SSC-159236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "resource": "Reactome", "description": "Transport of Mature mRNA derived from an Intron-Containing Transcript" }, { "id": "R-SSC-1855170", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855170", "resource": "Reactome", "description": "IPs transport between nucleus and cytosol" }, { "id": "R-SSC-1855196", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855196", "resource": "Reactome", "description": "IP3 and IP4 transport between cytosol and nucleus" }, { "id": "R-SSC-1855229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855229", "resource": "Reactome", "description": "IP6 and IP7 transport between cytosol and nucleus" }, { "id": "R-SSC-191859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "resource": "Reactome", "description": "snRNP Assembly" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2500257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "resource": "Reactome", "description": "Resolution of Sister Chromatid Cohesion" }, { "id": "R-SSC-3108214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "resource": "Reactome", "description": "SUMOylation of DNA damage response and repair proteins" }, { "id": "R-SSC-3232142", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3232142", "resource": "Reactome", "description": "SUMOylation of ubiquitinylation proteins" }, { "id": "R-SSC-3301854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3301854", "resource": "Reactome", "description": "Nuclear Pore Complex (NPC) Disassembly" }, { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" }, { "id": "R-SSC-4085377", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085377", "resource": "Reactome", "description": "SUMOylation of SUMOylation proteins" }, { "id": "R-SSC-4551638", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551638", "resource": "Reactome", "description": "SUMOylation of chromatin organization proteins" }, { "id": "R-SSC-4570464", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4570464", "resource": "Reactome", "description": "SUMOylation of RNA binding proteins" }, { "id": "R-SSC-4615885", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4615885", "resource": "Reactome", "description": "SUMOylation of DNA replication proteins" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-68877", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "resource": "Reactome", "description": "Mitotic Prometaphase" }, { "id": "R-SSC-9615933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9615933", "resource": "Reactome", "description": "Postmitotic nuclear pore complex (NPC) reformation" }, { "id": "R-SSC-9648025", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "resource": "Reactome", "description": "EML4 and NUDC in mitotic spindle formation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IIZ7-1", "protein_name": "Nucleoporin Nup43", "gene_name": "Nup43", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPVPSGSLQTAETFATGSWDNEENCVSLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWPAAHHHTGPGSPSYSSAPCTGIVCDNPEIVTVGEDGRINLFRVDHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFRQQGSEPCQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTNGPEKSSLFYQGGRSSTFLSHSISNQASVHQSLISSWLSTDPAKDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 380 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1C370-1", "protein_name": "Nucleoporin 43", "gene_name": "NUP43", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEVCARFVSQKISKARWRPLPAAALQPPDLFATGSWDNEDNRISIWSVGDVGSAGLNGEYQGEPQLLCDIRHNGDVMDMQFLDQERIVVGSSTGSVTVFRHHQNNQTLSASHRWENAHYHADQYTACGGAACTGVICNNPEIVTVGEDGRINLYRADQKDAVRTIDNADSSTLHAVTFLRTTEILTVNSIGQLKIWDFRQQRNEPAQIFSLTGDRVPLHCVDRHPNQQHIVATGGQDGMLSIWDIRQGTMPVSLLNAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDTSTDVSEKPSFLHQGGRSTAYFSHSTINQSVVSAWLSNDPTKDRMEITNLIPNQTLSVNTLDVLGPCLVYGTDAEAIYVNRQLFA", "length": 374 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P59235-1", "protein_name": "Nucleoporin Nup43", "gene_name": "Nup43", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPVPSGSLQTTETFATGSWDNEENCVSLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWPAAHYHTGPSSPSYSSAPCTGIVCDNPEIVTVGEDGRINLFRVDHKEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFRQQGSEPCQILSLTGDRVPLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDHLFTCSEDGSLWHWDASTDAPEKSSLFHQGGRSSTFLSHSLSNQAGVHQSLVSSWLSTDPAKDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS", "length": 380 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54Z22-1", "protein_name": "Nuclear pore complex protein nup43", "gene_name": "nup43", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSVSVHYSTHKINKVRFLNRNFHNDTSLFVTGTNHPVLSKNKISVWGLESRQNSDEIEELASVPIDGIVTELKVIEINNKPMIIGSTSKGSIFMYSIFNLPNKFEYIGYDGLLDKKYENYNNINNINDTYDTCNLLKERIWFNSSSNNNNVNSNNINNNNYNNNNNNYNNNNNNNNNNNNNNNNNNNNGSCINSFDISYDQHSLVTVGNDGVMNLLSIENLIPIYTNRYIDGLSVNVVKSITSNQIITSGELGRYIKFWDIRSNSSQPVKTIKTQCPRIFSLAIHKDEQHIIAAGSSDGQVNLFDIRNDYSIDQNKTHNSNVWELSFSKSNPNQLYSCSEDGFIYQYSYNKDNLGGGGMMTLPNQINNTFDIYSKEVSLLQLPTSIGSIDSFDINSNINRLICCSTSSQCLIVKSL", "length": 417 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVISSWLSTDPAKDRIEITSLLPSRSLSVNTLDVLGPCLVCGTDAEAIYVTRHLFS", "length": 380 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VE85-1", "protein_name": "Nucleoporin 43kD", "gene_name": "Nup43", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIANVSTHYISEKVSQVRWLPEELQQSERFVTGSWDMDQNFVRLWRLQSNQYVTATDSEVDQIPRCMDKVRMEDDVTAMEFVDKDTLAVSCADGHLSVFNVHRAVEEDQMQRTSRSGRLHCFQRSQEPAPCTDLSVYGTDIATAGEDGCVSIVSVENVRQVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDARVATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMRNLSYPASYLSAHKSPINEIGFHQKDPSKLFTAAEGGEVWMWSENKVLGCDYNKDGHSPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEAVYLVDNIV", "length": 358 }, "evidence": [ { "id": "A0A4X1VR16", "url": "https://omabrowser.org/oma/group/A0A4X1VR16/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear pore outer ring", "id": "GO:0031080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031080", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VR16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VR16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 222, "end_pos": 224 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WBD8-1", "uniprot_ac": "A0A4X1WBD8", "uniprot_id": "A0A4X1WBD8_PIG", "mass": { "chemical_mass": 9521.0, "monoisotopic_mass": 9521.0 }, "refseq": {}, "gene_names": [ { "name": "MYG1", "type": "recommended", "evidence": [ { "id": "A0A4X1WBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ] }, { "name": "PFDN5", "type": "recommended", "evidence": [ { "id": "A0A4X1WBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ] }, { "name": "PFDN5", "type": "synonym", "evidence": [ { "id": "A0A4X1WBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ] } ], "protein_names": [ { "name": "MYG1 exonuclease", "type": "synonym", "evidence": [ { "id": "A0A4X1WBD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.", "evidence": [ { "database": "UniProtKB", "id": "F1SFR1", "url": "https://www.uniprot.org/uniprotkb/F1SFR1#function" }, { "database": "UniProtKB", "id": "ARBA00057914", "url": "https://www.uniprot.org/uniprotkb/ARBA00057914#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PFDN5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8", "locus": { "chromosome": "5", "start_pos": 18517174, "end_pos": 18512697, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000267", "url": "https://www.ensembl.org/id/ENSSSCG00000000267" } ] } } ], "crossref": [ { "id": "A0A4X1WBD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WBD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000267", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000267", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23157", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23157", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504162", "url": "https://www.ncbi.nlm.nih.gov/gene/106504162", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504162", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504162", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFR1", "url": "https://www.orthodb.org/?gene=F1SFR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12674", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12674", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12674:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12674:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02996", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02996", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W5V3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5V3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WBD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7N2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR1", "url": "https://www.uniprot.org/uniprotkb/F1SFR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQSVNITELNLPQLEMLKNQLDQTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA", "length": 84, "header": "tr|A0A4X1WBD8-1|A0A4X1WBD8_PIG Isoform 1 of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=PFDN5 PE=1 SV=1 CANONICAL=A0A4X1WBD8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W5V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5V3/entry", "sequence": { "sequence": "MAQSVNITELNLPQLEMLKNQLDQMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA", "length": 109, "header": "tr|A0A4X1W5V3-1|A0A4X1WBD8_PIG Computationally mapped isoform of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=PFDN5 PE=1 SV=1 CANONICAL=A0A4X1WBD8-1" }, "locus": { "chromosome": "5", "start_pos": 18516798, "end_pos": 18512719, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088248.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088248.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064838.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064838.1" } ] } }, { "isoform_ac": "A0A4X1WBD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8/entry", "sequence": { "sequence": "MAQSVNITELNLPQLEMLKNQLDQTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA", "length": 84, "header": "tr|A0A4X1WBD8-1|A0A4X1WBD8_PIG Isoform 1 of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=PFDN5 PE=1 SV=1 CANONICAL=A0A4X1WBD8-1" }, "locus": { "chromosome": "5", "start_pos": 18516798, "end_pos": 18512719, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099275.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099275.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078465.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078465.1" } ] } }, { "isoform_ac": "A0A8W4F7N2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N2/entry", "sequence": { "sequence": "MYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA", "length": 85, "header": "tr|A0A8W4F7N2-1|A0A8W4F7N2_PIG Computationally mapped isoform of MYG1 exonuclease OS=Sus scrofa OX=9823 GN=PFDN5 PE=1 SV=1 CANONICAL=A0A4X1WBD8-1" }, "locus": { "chromosome": "5", "start_pos": 18516798, "end_pos": 18514939, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103192.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103192.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074788.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074788.1" } ] } }, { "isoform_ac": "F1SFR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR1/entry", "sequence": { "sequence": "MAQSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA", "length": 154, "header": "tr|F1SFR1-1|F1SFR1_PIG Computationally mapped isoform of Prefoldin subunit 5 OS=Sus scrofa OX=9823 GN=MYG1 PE=1 SV=3 CANONICAL=A0A4X1WBD8-1" }, "locus": { "chromosome": "5", "start_pos": 18516798, "end_pos": 18512719, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000286.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000286.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000282.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000282.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5V3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5V3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504162", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504162", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "prefoldin complex", "id": "GO:0016272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016272", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "amyloid-beta binding", "id": "GO:0001540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001540", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "negative regulation of amyloid fibril formation", "id": "GO:1905907", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905907", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "RNA polymerase II core complex assembly", "id": "GO:1990114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990114", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "RNA polymerase I assembly", "id": "GO:1990113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990113", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" }, { "name": "RNA polymerase III assembly", "id": "GO:1990115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990115", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WBD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WBD8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1W7J2-1", "uniprot_ac": "A0A4X1W7J2", "uniprot_id": "A0A4X1W7J2_PIG", "mass": { "chemical_mass": 23937.0, "monoisotopic_mass": 23937.0 }, "refseq": {}, "gene_names": [ { "name": "STEEP1", "type": "recommended", "evidence": [ { "id": "A0A4X1W7J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ] } ], "protein_names": [ { "name": "STING ER exit protein", "type": "recommended", "evidence": [ { "id": "A0A4X1W7J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Molecular adapter that stimulates membrane curvature formation and subsequent endoplasmic reticulum exit site (ERES) establishment by recruiting PI3K complex I, leading to COPII vesicle-mediated transport. Promotes endoplasmic reticulum (ER) exit of cGAMP-activated STING1 oligomers.", "evidence": [ { "database": "UniProtKB", "id": "F2Z566", "url": "https://www.uniprot.org/uniprotkb/F2Z566#function" }, { "database": "UniProtKB", "id": "ARBA00046019", "url": "https://www.uniprot.org/uniprotkb/ARBA00046019#function" }, { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STEEP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2", "locus": { "chromosome": "X", "start_pos": 97974604, "end_pos": 97986278, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012622", "url": "https://www.ensembl.org/id/ENSSSCG00000012622" } ] } } ], "crossref": [ { "id": "A0A4X1W7J2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1W7J2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012622", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012622", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152936", "url": "https://www.ncbi.nlm.nih.gov/gene/100152936", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152936", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HVTFVMF", "url": "https://omabrowser.org/oma/group/HVTFVMF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z566", "url": "https://www.orthodb.org/?gene=F2Z566", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46355", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46355", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46355:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46355:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z566", "url": "https://www.uniprot.org/uniprotkb/F2Z566", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z566-1", "url": "https://www.uniprot.org/uniprotkb/F2Z566-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 208, "header": "tr|A0A4X1W7J2-1|A0A4X1W7J2_PIG Isoform 1 of STING ER exit protein OS=Sus scrofa OX=9823 GN=STEEP1 PE=3 SV=1 CANONICAL=A0A4X1W7J2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2/entry", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 208, "header": "tr|A0A4X1W7J2-1|A0A4X1W7J2_PIG Isoform 1 of STING ER exit protein OS=Sus scrofa OX=9823 GN=STEEP1 PE=3 SV=1 CANONICAL=A0A4X1W7J2-1" }, "locus": { "chromosome": "X", "start_pos": 97986223, "end_pos": 97974969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079359.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079359.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060469.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060469.1" } ] } }, { "isoform_ac": "F2Z566-1", "url": "https://www.uniprot.org/uniprotkb/F2Z566/entry", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 222, "header": "tr|F2Z566-1|F2Z566_PIG Computationally mapped isoform of STING ER exit protein OS=Sus scrofa OX=9823 GN=STEEP1 PE=3 SV=1 CANONICAL=A0A4X1W7J2-1" }, "locus": { "chromosome": "X", "start_pos": 97986223, "end_pos": 97974969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013801.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013801.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013420.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013420.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152936", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152936", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BYZ0-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRARVIDAAKHAHKFCNAEEEETVFLRRPEGIERQFRKKCGKCGLLLFYQHQQKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREIADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 222 }, "evidence": [ { "id": "A0A4X1W7J2", "url": "https://omabrowser.org/oma/group/A0A4X1W7J2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3T197-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDGAKHAHKFCNTEDEETIYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 222 }, "evidence": [ { "id": "A0A4X1W7J2", "url": "https://omabrowser.org/oma/group/A0A4X1W7J2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VDP2-1", "protein_name": "STING ER exit protein", "gene_name": "Steep1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETTYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 222 }, "evidence": [ { "id": "A0A4X1W7J2", "url": "https://omabrowser.org/oma/group/A0A4X1W7J2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H5V9-1", "protein_name": "STING ER exit protein", "gene_name": "STEEP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTNIYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRLQELAELEAKKAKMKGTLIDNQFK", "length": 222 }, "evidence": [ { "id": "A0A4X1W7J2", "url": "https://omabrowser.org/oma/group/A0A4X1W7J2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V412-1", "protein_name": "STING ER exit protein", "gene_name": "Steep1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLREVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSLPLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPATSAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLER", "length": 247 }, "evidence": [ { "id": "A0A4X1W7J2", "url": "https://omabrowser.org/oma/group/A0A4X1W7J2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum membrane organization", "id": "GO:0090158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090158", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" }, { "name": "protein exit from endoplasmic reticulum", "id": "GO:0032527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032527", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" }, { "name": "cell body", "id": "GO:0044297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044297", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7J2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1W7J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7J2" }, { "id": "PF25809", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25809" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "STEEP1", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 108, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE07-1", "uniprot_ac": "A0A5G2QE07", "uniprot_id": "A0A5G2QE07_PIG", "mass": { "chemical_mass": 26968.0, "monoisotopic_mass": 26968.0 }, "refseq": {}, "gene_names": [ { "name": "LGALS3", "type": "recommended", "evidence": [ { "id": "A0A5G2QE07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ] } ], "protein_names": [ { "name": "Galectin", "type": "recommended", "evidence": [ { "id": "A0A5G2QE07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LGALS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07", "locus": { "chromosome": "1", "start_pos": 184497951, "end_pos": 184478710, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005055", "url": "https://www.ensembl.org/id/ENSSSCG00000005055" } ] } } ], "crossref": [ { "id": "A0A5G2QE07", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005055", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005055", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00070", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00070", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7M4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7M4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7M4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1I2F1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1I2F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1I2F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1I2F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q8W1", "url": "https://www.uniprot.org/uniprotkb/F6Q8W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q8W1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q8W1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SFQLNDALSGSGKPNPQGWPGAWGNQPAGPGGYPGASYPGTYPGQGPPGAYPGQAPPGAYPGQAPPGAYPGPTAPGYPGPAAPGAYPGQPGGPGAYPPPAQPSAPGAYPATGPYGAPSGPLNVPYDLPLPGGVMPRMLITILGTVKPNANRLALDFKKGNDVAFHFNPRFNEDNRRVIVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLREISKLGISGDITLTSASHTMI", "length": 257, "header": "tr|A0A5G2QE07-1|A0A5G2QE07_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=LGALS3 PE=1 SV=1 CANONICAL=A0A5G2QE07-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07/entry", "sequence": { "sequence": "SFQLNDALSGSGKPNPQGWPGAWGNQPAGPGGYPGASYPGTYPGQGPPGAYPGQAPPGAYPGQAPPGAYPGPTAPGYPGPAAPGAYPGQPGGPGAYPPPAQPSAPGAYPATGPYGAPSGPLNVPYDLPLPGGVMPRMLITILGTVKPNANRLALDFKKGNDVAFHFNPRFNEDNRRVIVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLREISKLGISGDITLTSASHTMI", "length": 257, "header": "tr|A0A5G2QE07-1|A0A5G2QE07_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=LGALS3 PE=1 SV=1 CANONICAL=A0A5G2QE07-1" }, "locus": { "chromosome": "1", "start_pos": 184496002, "end_pos": 184487688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080702.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080702.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061882.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061882.1" } ] } }, { "isoform_ac": "A0A5G2R7M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7M4/entry", "sequence": { "sequence": "RMLNDALSGSGKPNPQGWPGAWGNQPAGPGGYPGASYPGTYPGQGPPGAYPGQAPPGAYPGQAPPGAYPGPTAPGYPGPAAPGAYPGQPGGPGAYPPPAQPSAPGAYPATGPYGAPSGPLNVPYDLPLPGGVMPRMLITILGTVKPNANRLALDFKKGNDVAFHFNPRFNEDNRRVIVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLREISKLGISGDITLTSASHTMI", "length": 256, "header": "tr|A0A5G2R7M4-1|A0A5G2R7M4_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS3 PE=1 SV=2 CANONICAL=A0A5G2QE07-1" }, "locus": { "chromosome": "1", "start_pos": 184496002, "end_pos": 184487427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068434.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068434.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070132.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070132.2" } ] } }, { "isoform_ac": "A0A8D1I2F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1I2F1/entry", "sequence": { "sequence": "MMDGTGFQTKSYDSISQLNDALSGSGKPNPQGWPGAWGNQPAGPGGYPGASYPGTYPGQGPPGAYPGQAPPGAYPGQAPPGAYPGPTAPGYPGPAAPGAYPGQPGGPGAYPPPAQPSAPGAYPATGPYGAPSGPLNVPYDLPLPGGVMPRMLITILGTVKPNANRLALDFKKGNDVAFHFNPRFNEDNRRVIVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLREISKLGISGDITLTSASHTMI", "length": 271, "header": "tr|A0A8D1I2F1-1|A0A5G2QE07_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS3 PE=1 SV=2 CANONICAL=A0A5G2QE07-1" }, "locus": { "chromosome": "1", "start_pos": 184496002, "end_pos": 184487178, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072475.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072475.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063001.1" } ] } }, { "isoform_ac": "F6Q8W1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q8W1/entry", "sequence": { "sequence": "RMADGFSLNDALSGSGKPNPQGWPGAWGNQPAGPGGYPGASYPGTYPGQGPPGAYPGQAPPGAYPGQAPPGAYPGPTAPGYPGPAAPGAYPGQPGGPGAYPPPAQPSAPGAYPATGPYGAPSGPLNVPYDLPLPGGVMPRMLITILGTVKPNANRLALDFKKGNDVAFHFNPRFNEDNRRVIVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLREISKLGISGDITLTSASHTMI", "length": 261, "header": "tr|F6Q8W1-1|F6Q8W1_PIG Computationally mapped isoform of Galectin OS=Sus scrofa OX=9823 GN=LGALS3 PE=1 SV=1 CANONICAL=A0A5G2QE07-1" }, "locus": { "chromosome": "1", "start_pos": 184496002, "end_pos": 184486129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005572.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005572.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005434.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005434.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 73, "start_aa": "Thr", "end_pos": 73, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1I2F1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1I2F1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 9, "go_terms": [ { "name": "IgE binding", "id": "GO:0019863", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019863", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "chemoattractant activity", "id": "GO:0042056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042056", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "laminin binding", "id": "GO:0043236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "disaccharide binding", "id": "GO:0048030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "molecular condensate scaffold activity", "id": "GO:0140693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140693", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "receptor ligand inhibitor activity", "id": "GO:0141069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141069", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "immunological synapse", "id": "GO:0001772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001772", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 20, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "regulation of T cell apoptotic process", "id": "GO:0070232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070232", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "positive regulation of mononuclear cell migration", "id": "GO:0071677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "negative regulation of endocytosis", "id": "GO:0045806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045806", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "positive regulation of protein-containing complex assembly", "id": "GO:0031334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031334", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "positive regulation of protein localization to plasma membrane", "id": "GO:1903078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903078", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "negative regulation of extrinsic apoptotic signaling pathway", "id": "GO:2001237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001237", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "monocyte chemotaxis", "id": "GO:0002548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002548", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "positive chemotaxis", "id": "GO:0050918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050918", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "positive regulation of calcium ion import", "id": "GO:0090280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090280", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "regulation of extrinsic apoptotic signaling pathway via death domain receptors", "id": "GO:1902041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902041", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "macrophage chemotaxis", "id": "GO:0048246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "neutrophil chemotaxis", "id": "GO:0030593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030593", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "eosinophil chemotaxis", "id": "GO:0048245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048245", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "regulation of T cell proliferation", "id": "GO:0042129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042129", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" }, { "name": "negative regulation of NK T cell activation", "id": "GO:0051134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051134", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QE07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 257, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QE07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE07" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QE07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE07" }, { "id": "PS51304", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Galectin", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 255, "start_aa": "Tyr", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 73 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCK4-1", "uniprot_ac": "A0A4X1WCK4", "uniprot_id": "A0A4X1WCK4_PIG", "mass": { "chemical_mass": 51773.0, "monoisotopic_mass": 51773.0 }, "refseq": { "ac": "XP_020947286", "name": "microspherule protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947286" }, "gene_names": [ { "name": "MCRS1", "type": "recommended", "evidence": [ { "id": "A0A4X1WCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ] }, { "name": "MCRS1", "type": "synonym", "evidence": [ { "id": "XP_020947286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947286" } ] } ], "protein_names": [ { "name": "Microspherule protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1WCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4/entry#names_and_taxonomy" } ] }, { "name": "58 kDa microspherule protein", "type": "synonym", "evidence": [ { "id": "A0A4X1WCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4/entry#names_and_taxonomy" } ] }, { "name": "microspherule protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020947286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947286" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MCRS1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4", "locus": { "chromosome": "5", "start_pos": 15517032, "end_pos": 15526510, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000202", "url": "https://www.ensembl.org/id/ENSSSCG00000000202" } ] } } ], "crossref": [ { "id": "A0A4X1WCK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000202", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000202", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22687", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22687", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516550", "url": "https://www.ncbi.nlm.nih.gov/gene/100516550", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13233", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13233", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13233:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13233:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00498", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00498", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13325", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13325", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214847", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947286", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHB3", "url": "https://www.uniprot.org/uniprotkb/F1SHB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHELTVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ", "length": 462, "header": "tr|A0A4X1WCK4-1|A0A4X1WCK4_PIG Isoform 1 of Microspherule protein 1 OS=Sus scrofa OX=9823 GN=MCRS1 PE=4 SV=1 CANONICAL=A0A4X1WCK4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WCK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4/entry", "sequence": { "sequence": "MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHELTVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ", "length": 462, "header": "tr|A0A4X1WCK4-1|A0A4X1WCK4_PIG Isoform 1 of Microspherule protein 1 OS=Sus scrofa OX=9823 GN=MCRS1 PE=4 SV=1 CANONICAL=A0A4X1WCK4-1" }, "locus": { "chromosome": "5", "start_pos": 15525124, "end_pos": 15517381, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065788.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065788.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050578.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050578.2" } ] } }, { "isoform_ac": "F1SHB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHB3/entry", "sequence": { "sequence": "MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHGECAPVGTVRGWKHLLEQRATGQGAELTVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ", "length": 487, "header": "tr|F1SHB3-1|A0A4X1WCK4_PIG Computationally mapped isoform of Microspherule protein 1 OS=Sus scrofa OX=9823 GN=MCRS1 PE=4 SV=4 CANONICAL=A0A4X1WCK4-1" }, "locus": { "chromosome": "5", "start_pos": 15525124, "end_pos": 15517381, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000215.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000215.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000213.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000213.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHB3", "url": "https://www.uniprot.org/uniprotkb/F1SHB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "regulation of DNA strand elongation", "id": "GO:0060382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060382", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "telomere maintenance", "id": "GO:0000723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "positive regulation of DNA repair", "id": "GO:0045739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "regulation of DNA replication", "id": "GO:0006275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006275", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "positive regulation of protein localization to nucleolus", "id": "GO:1904751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904751", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "positive regulation of telomere maintenance in response to DNA damage", "id": "GO:1904507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904507", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "regulation of telomere maintenance", "id": "GO:0032204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032204", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "Ino80 complex", "id": "GO:0031011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031011", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "MLL1 complex", "id": "GO:0071339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071339", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "histone acetyltransferase complex", "id": "GO:0000123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000123", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "NSL complex", "id": "GO:0044545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044545", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G-quadruplex RNA binding", "id": "GO:0002151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002151", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" }, { "name": "poly(G) binding", "id": "GO:0034046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034046", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCK4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCK4" }, { "id": "PS50006", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50006" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHA", "eco_id": "ECO_0000259", "start_pos": 363, "end_pos": 419, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 280, "end_pos": 282 }, { "start_pos": 343, "end_pos": 345 }, { "start_pos": 429, "end_pos": 431 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAG4-1", "uniprot_ac": "A0A5G2QAG4", "uniprot_id": "A0A5G2QAG4_PIG", "mass": { "chemical_mass": 112144.0, "monoisotopic_mass": 112144.0 }, "refseq": {}, "gene_names": [ { "name": "NHSL3", "type": "recommended", "evidence": [ { "id": "A0A5G2QAG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4" } ] } ], "protein_names": [ { "name": "NHS like 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QAG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NHSL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4", "locus": { "chromosome": "6", "start_pos": 89087839, "end_pos": 89058808, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037621", "url": "https://www.ensembl.org/id/ENSSSCG00000037621" } ] } } ], "crossref": [ { "id": "A0A5G2QAG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037621", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037621", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23039:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23039:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BIC6", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYH0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VYH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAREPPAAPAADEPGGPGGPPRRKKSRSGASGLRRAFSWLRGKRRKKKAAGAEGAEPAAPRAKKADDKARRAKGKGRGSAKAESDKRLSAGPSQGPGSVVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLNKAAWDHGDTQSIQSSRTGPDEDSISFCSQTTSYTAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRPPGPRDAVRIPTVDGRPAGLASGPGARVSLQALEAEAEAGAKAEAMLQRHIDRIYRDDTLVGRSTGARPPPLTRPMSLAVPGLTGGAGPPEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLLSASPASVRSFGHFSSASSPRPRSRHPSSSSDTWSHSQSSETIVSDGSTLSSKGGSEAPEGSVASSSVAPPPQGGSGRGSPSGGSTAEASDTVSIRSGGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGSVAPDGPLGLPPKPERKQQPQLPRPPTTGGSEGMGAAPCPSSSAGSWAPVLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGASASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPHMSTTLGDRFVIPPHPKVPAPFSPPPSKPKSPKQAAPAPAAPAVIPGPISITATSPESPPTPQISLTPPQASLVASKDQSPPPSPPPSYHPPPPPTKKPEAVEEALSAPETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVAGPESAGPSHPLEPSSAAVSIQNQPCGTPDPPPALPAPPAAGSVTGLLAKVPGREPVGCSRGGGLPREDAGAPLVTPSLLQMVRLRSVGAPTVAPNPASAPSAPQKPLRRALSGRASPTPAPSSGLHAAVRLKASNLAASVGPVSAQPNGPPEAEQRSPASTASFIFSKGSKKLQLERPLSPETQADLQRNLVAELRSISEQRPPQATKKPPKAPPPVARKPSGGVPPPTSPSFPPAEPLTAPPTNGLPHAQAEDRTKEELAENGGVPQLVGPEEQKLGVPGSGPQKELV", "length": 1088, "header": "tr|A0A5G2QAG4-1|A0A5G2QAG4_PIG Isoform 1 of NHS like 3 OS=Sus scrofa OX=9823 GN=NHSL3 PE=4 SV=1 CANONICAL=A0A5G2QAG4-1" }, "isoforms": [ { "isoform_ac": "A0A287BIC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC6/entry", "sequence": { "sequence": "MVVFLGRHLPALLGLFKKKGSAKAESDKRLSAGPSQGPGSVVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLNKAAWDHGDTQSIQSSRTGPDEDSISFCSQTTSYTAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRPPGPRDAVRIPTVDGRPAGLASGPGARVSLQALEAEAEAGAKAEAMLQRHIDRIYRDDTLVGRSTGARPPPLTRPMSLAVPGLTGGAGPPEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLLSASPASVRSFGHFSSASSPRPRSRHPSSSSDTWSHSQSSETIVSDGSTLSSKGGSEAPEGSVASSSVAPPPQGGSGRGSPSGGSTAEASDTVSIRSGGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGSVAPDGPLGLPPKPERKQQPQLPRPPTTGGSEGMGAAPCPSSSAGSWAPVLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGASASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPHMSTTLGDRFVIPPHPKVPAPFSPPPSKPKSPKQAAPAPAAPAVIPGPISITATSPESPPTPQISLTPPQASLVASKDQSPPPSPPPSYHPPPPPTKKPEAVEEALSAPETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVAGPESAGPSHPLEPSSAAVSIQNQPCGTPDPPPALPAPPAAGSVTGLLAKVPGREPVGCSRGGGLPREDAGAPLVTPSLLQMVRLRSVGAPTVAPNPASAPSAPQKPLRRALSGRASPTPAPSSGLHAAVRLKASNLAASVGPVSAQPNGPPEAEQRSPASTASFIFSKGSKKLQLERPLSPETQADLQRNLVAELRSISEQRPPQATKKPPKAPPPVARKPSGGVPPPTSPSFPPAEPLTAPPTNGLPHAQAEDRTKEELAENGGVPQLVGPEEQKLGVPGSGPQKELV", "length": 1029, "header": "tr|A0A287BIC6-1|A0A287BIC6_PIG Computationally mapped isoform of NHS like 3 OS=Sus scrofa OX=9823 GN=NHSL3 PE=4 SV=2 CANONICAL=A0A5G2QAG4-1" }, "locus": { "chromosome": "6", "start_pos": 89085652, "end_pos": 89079276, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048022.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048022.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055824.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055824.2" } ] } }, { "isoform_ac": "A0A4X1VYH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYH0/entry", "sequence": { "sequence": "MVVFLGRHLPALLGLFKKKGSAKAESDKRLSAGPSQGPGSVVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLNKAAWDHGDTQSIQSSRTGPDEDSISFCSQTTSYTAESSTAEDALSIRSEMIQRKGPQKELV", "length": 143, "header": "tr|A0A4X1VYH0-1|A0A5G2QAG4_PIG Computationally mapped isoform of NHS like 3 OS=Sus scrofa OX=9823 GN=NHSL3 PE=4 SV=1 CANONICAL=A0A5G2QAG4-1" }, "locus": { "chromosome": "6", "start_pos": 89085652, "end_pos": 89079276, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084256.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084256.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071232.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071232.1" } ] } }, { "isoform_ac": "A0A5G2QAG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4/entry", "sequence": { "sequence": "MAAREPPAAPAADEPGGPGGPPRRKKSRSGASGLRRAFSWLRGKRRKKKAAGAEGAEPAAPRAKKADDKARRAKGKGRGSAKAESDKRLSAGPSQGPGSVVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLNKAAWDHGDTQSIQSSRTGPDEDSISFCSQTTSYTAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRPPGPRDAVRIPTVDGRPAGLASGPGARVSLQALEAEAEAGAKAEAMLQRHIDRIYRDDTLVGRSTGARPPPLTRPMSLAVPGLTGGAGPPEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLLSASPASVRSFGHFSSASSPRPRSRHPSSSSDTWSHSQSSETIVSDGSTLSSKGGSEAPEGSVASSSVAPPPQGGSGRGSPSGGSTAEASDTVSIRSGGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGSVAPDGPLGLPPKPERKQQPQLPRPPTTGGSEGMGAAPCPSSSAGSWAPVLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGASASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPHMSTTLGDRFVIPPHPKVPAPFSPPPSKPKSPKQAAPAPAAPAVIPGPISITATSPESPPTPQISLTPPQASLVASKDQSPPPSPPPSYHPPPPPTKKPEAVEEALSAPETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVAGPESAGPSHPLEPSSAAVSIQNQPCGTPDPPPALPAPPAAGSVTGLLAKVPGREPVGCSRGGGLPREDAGAPLVTPSLLQMVRLRSVGAPTVAPNPASAPSAPQKPLRRALSGRASPTPAPSSGLHAAVRLKASNLAASVGPVSAQPNGPPEAEQRSPASTASFIFSKGSKKLQLERPLSPETQADLQRNLVAELRSISEQRPPQATKKPPKAPPPVARKPSGGVPPPTSPSFPPAEPLTAPPTNGLPHAQAEDRTKEELAENGGVPQLVGPEEQKLGVPGSGPQKELV", "length": 1088, "header": "tr|A0A5G2QAG4-1|A0A5G2QAG4_PIG Isoform 1 of NHS like 3 OS=Sus scrofa OX=9823 GN=NHSL3 PE=4 SV=1 CANONICAL=A0A5G2QAG4-1" }, "locus": { "chromosome": "6", "start_pos": 89085652, "end_pos": 89059007, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071251.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071251.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060363.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060363.1" } ] } }, { "isoform_ac": "A0A5G2QJ82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ82/entry", "sequence": { "sequence": "MGNSHHKRKAPSGPRARSFWRFGRSAKRPAGSAKAESDKRLSAGPSQGPGSVVDEHQDNVFFPSGRPPHLEELHTQAQEGLRSLQHQERQKLNKAAWDHGDTQSIQSSRTGPDEDSISFCSQTTSYTAESSTAEDALSIRSEMIQRKGSTFRPHDSFPKSSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRPPGPRDAVRIPTVDGRPAGLASGPGARVSLQALEAEAEAGAKAEAMLQRHIDRIYRDDTLVGRSTGARPPPLTRPMSLAVPGLTGGAGPPEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLLSASPASVRSFGHFSSASSPRPRSRHPSSSSDTWSHSQSSETIVSDGSTLSSKGGSEAPEGSVASSSVAPPPQGGSGRGSPSGGSTAEASDTVSIRSGGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGSVAPDGPLGLPPKPERKQQPQLPRPPTTGGSEGMGAAPCPSSSAGSWAPVLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGASASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPHMSTTLGDRFVIPPHPKVPAPFSPPPSKPKSPKQAAPAPAAPAVIPGPISITATSPESPPTPQISLTPPQASLVASKDQSPPPSPPPSYHPPPPPTKKPEAVEEALSAPETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVAGPESAGPSHPLEPSSAAVSIQNQPCGTPDPPPALPAPPAAGSVTGLLAKVPGREPVGCSRGGGLPREDAGAPLVTPSLLQMVRLRSVGAPTVAPNPASAPSAPQKPLRRALSGRASPTPAPSSGLHAAVRLKASNLAASVGPVSAQPNGPPEAEQRSPASTASFIFSKGSKKLQLERPLSPETQADLQRNLVAELRSISEQRPPQATKKPPKAPPPVARKPSGGVPPPTSPSFPPAEPLTAPPTNGLPHAQAEDRTKEELAENGGVPQLVGPEEQKLGVPGSGPQKELV", "length": 1040, "header": "tr|A0A5G2QJ82-1|A0A5G2QJ82_PIG Computationally mapped isoform of NHS like 3 OS=Sus scrofa OX=9823 GN=NHSL3 PE=4 SV=1 CANONICAL=A0A5G2QAG4-1" }, "locus": { "chromosome": "6", "start_pos": 89085652, "end_pos": 89069128, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068288.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068288.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063991.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063991.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 874, "start_aa": "Thr", "end_pos": 874, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr874", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 917, "start_aa": "Thr", "end_pos": 917, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr917", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VYH0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VYH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAG4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1088, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAG4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAG4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 874, 917 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCR2-1", "uniprot_ac": "A0A4X1WCR2", "uniprot_id": "A0A4X1WCR2_PIG", "mass": { "chemical_mass": 139928.0, "monoisotopic_mass": 139928.0 }, "refseq": { "ac": "XP_020943128", "name": "EH domain-binding protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943128" }, "gene_names": [ { "name": "EHBP1", "type": "recommended", "evidence": [ { "id": "A0A4X1WCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ] }, { "name": "EHBP1", "type": "synonym", "evidence": [ { "id": "XP_020943128", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943128" } ] } ], "protein_names": [ { "name": "EH domain binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1WCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2/entry#names_and_taxonomy" } ] }, { "name": "EH domain-binding protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943128", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943128" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EHBP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2", "locus": { "chromosome": "3", "start_pos": 78907317, "end_pos": 79257760, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008372", "url": "https://www.ensembl.org/id/ENSSSCG00000008372" } ] } } ], "crossref": [ { "id": "A0A4X1WCR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008372", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008372", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520668", "url": "https://www.ncbi.nlm.nih.gov/gene/100520668", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520668", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520668", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QQSSCDN", "url": "https://omabrowser.org/oma/group/QQSSCDN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WCR2", "url": "https://www.orthodb.org/?gene=A0A4X1WCR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943128", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943128", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AB72", "url": "https://www.uniprot.org/uniprotkb/A0A287AB72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AB72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5T9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5U4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XYW0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XYW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XYW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XYW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7C8", "url": "https://www.uniprot.org/uniprotkb/I3L7C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7C8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMPSAKSASSSEELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNVEIDTNEEISEGFVVGGGDELTNLENDLDTPEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1230, "header": "tr|A0A4X1WCR2-1|A0A4X1WCR2_PIG Isoform 1 of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "isoforms": [ { "isoform_ac": "A0A287AB72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB72/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNVEIDTNEEISEGFVVGGGDELTNLENDLDTPEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1195, "header": "tr|A0A287AB72-1|A0A287AB72_PIG Computationally mapped isoform of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79256274, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061355.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061355.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049661.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049661.1" } ] } }, { "isoform_ac": "A0A4X1W5T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5T9/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMPSAKSASSSEELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1194, "header": "tr|A0A4X1W5T9-1|A0A4X1WCR2_PIG Computationally mapped isoform of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79256274, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009167.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009167.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008936.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008936.4" } ] } }, { "isoform_ac": "A0A4X1W5U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5U4/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNVEIDTNEEISEGFVVGGGDELTNLENDLDTPEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1163, "header": "tr|A0A4X1W5U4-1|A0A4X1WCR2_PIG Computationally mapped isoform of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79256274, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054931.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054931.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037533.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037533.1" } ] } }, { "isoform_ac": "A0A4X1WCR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMPSAKSASSSEELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNVEIDTNEEISEGFVVGGGDELTNLENDLDTPEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1230, "header": "tr|A0A4X1WCR2-1|A0A4X1WCR2_PIG Isoform 1 of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79256274, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052845.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052845.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055591.1" } ] } }, { "isoform_ac": "A0A8D1XYW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XYW0/entry", "sequence": { "sequence": "MKGKETQEKERKQNQRRSFEGGLLSTGQKQDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMPSAKSASSSEELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1059, "header": "tr|A0A8D1XYW0-1|A0A8D1XYW0_PIG Computationally mapped isoform of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=1 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79109557, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059752.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059752.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053016.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053016.1" } ] } }, { "isoform_ac": "I3L7C8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7C8/entry", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDDESRVNQEEKAAKITELINTLNFLDEAKKDLATVNLNPFGDPDVAELNPFGDPDSEEQITETVSPKIPEESFYNNSYNPFKEVQTPQYLNPFDEPETFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKAEEEELDESNPFYEPKPAPPNNLVNPVQELETERKVKRKAPAPPSISPKTGEMNENTIVSAGRDLSTSPKLSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPTSGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICYNTDSNHAQVLLGKKRLLKTETLELSDLYVSDKKKDVSPPFICEETDEQKLQNLDISSNLDQEKLENTRPLECRSDPESPVKKTSSSPTSKLGYSYNRDADLAKKKRTSLRQTESDPDADKTTLNHADHSAKTVQHRMLSRQEELKERARVLLEQARRDAALKAGNKQNTNAATLCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGEQNTKLVDLKLKKLLETQPQVANSLSSAAQKAITESSEQDIKNGTEDLRTERLQKATERFRNPVVFSKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1159, "header": "tr|I3L7C8-1|I3L7C8_PIG Computationally mapped isoform of EH domain binding protein 1 OS=Sus scrofa OX=9823 GN=EHBP1 PE=1 SV=4 CANONICAL=A0A4X1WCR2-1" }, "locus": { "chromosome": "3", "start_pos": 79256274, "end_pos": 78908315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024919.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024919.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019933.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019933.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5T9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5T9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520668", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520668", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YYG4-1", "protein_name": "EH domain binding protein 1", "gene_name": "EHBP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENVEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEEDEENRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMPSAKSASSSEELINKLNFLDKEEHDLADSSMNPFGDPDAAELNPFGDPDVEELDSEIASSSKAEEGFYTDSYNPFKDEDAPEYLNPFDEPDPDPETFVTVRDSPPQPAKRKNVRPVDMSKYLYADTSKAEEEELDESNPFYEPKSSPALIKVGPLQEPEKKMKRKAPEPPNLLPKTETNMSENVSAIPASRELSSSPKPSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASLGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFCGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKRQPELQAPDGGLADFASQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPSSRRTRSDTDPQKSQQSSGRTSASEEVGKCSSTDTTQAQPVVGRKKLLKADTLDLSDLAHVGDQKEDVSPTIACEDNDKKRRQSSDNTVGFSEQEKLGHMGSPESVREDPGSRGMKPSLSPTSNLGYFYNKDVDLAKKTCASPRQAESDSDSDARMTSNHADPSAKTAQQRMLSRQEELKERARVLLEQARRDAALKAGSKQLTNTIIPARNKQLNDQQDEERRRQLRERARQLIAEARSGVKMSELPSYTEMAAEKLKERSKASGDEDEDDDNIEIDTNEEVPECSVTGGGDELTNLENDLDSTAEQNSKLVDLKLKKTLETQPQVANSLSSTAQKAVTDSSEQDVKQNGTEEHRAERLQKAAERFRNPVVFSKDSTVRKTQLQSFSQYVESRPEMKRQRSIQEDTKRGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVLLVNKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKREEKCVLQ", "length": 1244 }, "evidence": [ { "id": "A0A4X1WCR2", "url": "https://omabrowser.org/oma/group/A0A4X1WCR2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4UZL3-1", "protein_name": "Eps15 homology domain containing protein-binding protein 1, isoform F", "gene_name": "Ehbp1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASVWKRLQRNFKRAAKFQFTASYHDLHLETTAKWRPSNLSIVWTRRSRRVASAPLPWEPDMMNPLVGNISWPVPDNHTISVTLFKDPRTHELEDKDWTFVIEDVTPMGKKRVLANASINMRKYASIESTQQSFTLSLKPVSKKITAASLELTISCVFLREGKATDEDMQSVVSMMSVNNNDVAPLDDLEDIPDLDGFSEITDNFNDFTQQLEHMTTSLNGCIDVATPQSVPSLSEDPTPLAESFNPLHFELDADGKREAANKLDLPTAASGGSSGAEESLKTPNGLQHVVDQTPIKSPDEVKQPKQTPVESLRSKTNEDFDKMVTSTPLEPNVNKDDVKPKKKRALFFTEKEDEQDLRVESVKEDTTKTIGDNSTTKEKPKEESQSSKDASSVVVPSAKRPELQPLNLKKSYEPSQTPESAPVPASVINESIGSCFSTSGSLNNSLKPVEKIVLKENTPGQDLLEWCKEVTKDYPNVKVTNLTTSWRNGMAFCAIIHHFVPELIDMSKLSAHDVVGNCRIGFDAAESLGIPRVIEPRDMNMLTVPDKLAVMTYLHQLRAHFTGKQLKIEQIGSTADESSYVIGDYKSDNLSQNRINFSHPKSLLLHQNSFDEEINGSNKSEQLSPTSKKDVKNLILYNSKNILDKVLSPTKDKNSINASQHANQSPMLSCQTTPPQDESLDKGSQPGGKENSSITTIDPQAASEERQQRLLEQARRLILETRVKSGGSIESPTRPKLERTISPIHNGAEEFYAEHAKKLELKEPGSPSHRLSDPKVLQSFNAIVERVSPKHEKRGDKLSYIDSELEALEREQEAIDQKASNLEAKLRAVMGGNPSNNRRGGARNSNPFLRLIRNSIGGGDVIRIKLLDSDDESLFGGGAGSGGGRSGACSEDDDRDTSSDSVCNSGDELHTRLRPRPRSHSCFVNKNHQSTINTPAHLRPHHVHHVVPYTHMLDSSPSALSSQQSSCDNLPACSDDDEVLAVAANGRAASLRRQQDRHRRRRQRRERRSHLCHTPNHCETEETEEQLLSQWFTLVNKKNALLRRQMQLNILEQEKDLERKYTMLNQELRAAQSVEDWRKTEVQREKERLLLEELMTIVDKRDQLVQHLHNQEIAIEDDQEIARKLEHVDISAEKDKCVLQ", "length": 1141 }, "evidence": [ { "id": "A0A4X1WCR2", "url": "https://omabrowser.org/oma/group/A0A4X1WCR2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1LVX2-1", "protein_name": "EH domain binding protein 1", "gene_name": "Ehbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSNINMKQYASPMPTQTDVKLKLKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITEIVNQLNALSSLDEDHDDCVKQAAMPSAKSASSSEELINTLNFLDEAQKDLATVNTNPFDEPDVTELNPFGDPDSEESITETSSPRKAEESFYNNSCNPFKGVQTPQHLNPLDEPETFVMIKDSPPQSTRRRNPRPVDMSKYLYADSSKSEEELDESNPFYEPKPTSPNNLVNTVQEGETERRVKRRAPAPPVPPAPPALPALAPKTNESTVVSAGKDLSTSPKPSPIPSPVLGQKPNASQSLLAWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKPASQQPASGAVDLLSQDDSVFVTDSGVGESESERQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGLSSSTDSAQALILLGKKRLPKAEDLELRDLYVSGKKKDVSLPSTYEQKLQPVNPRSDVEQEKIENSRSLECRLDGELAIQKPRLSPPSKLGYSYNRDTDFTNKPCASLRQIESDPDADKSTLNHADHASKPVQHRMLSRQEELKERARVLLEQARRDAAFKAGSKHGGSTAPALCSRQLNDRQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEESPEGFVVGGGDELTNIESDLDTPEQNSKLVDLRLKKLLDAQPQVANSLSSAAQKAATDTSEQGEKNGMEDLRTERLQKATERFRNPVVFNKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTERGDEEKAMITEAQRKPSEDEKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCTLQ", "length": 1227 }, "evidence": [ { "id": "A0A4X1WCR2", "url": "https://omabrowser.org/oma/group/A0A4X1WCR2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q69ZW3-1", "protein_name": "EH domain-binding protein 1", "gene_name": "Ehbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSATLQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANVPSAKSASSSEELINTLNFLDEAQKDLATVNTNPFDEPDVTELNPFGDPDSEEPITETTSPKKPEESFYNNSCNPFKGVQTPQYLNPFDEPETFVMIKDSPPQSTRRKNLRPVDMSKYLYADSSKSEEELDESNPFYEPKPTSPNNLVNTVQEGETERRVKRRAPAPPAPLAPPAPPAPPALTPKTGVNENTVVSAGKDLSTSPKPSPIPSPVLGQKPNASQSLLAWCREVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPEPHQPARGAVDLLSQDDSVFVTDSGVGESESEHQTPDDHLSPSTASPYYRRTKSDTEPQKSQQSSARTSGSDDPGLSSSTDSAQALASLGKKRLKAENLELSDLCVSDKKKDVSPLSAYEQKLQTVHASSDMEQGKMEKSRSLECRLDGELAITKPNVSSPSKLGYNRDTDFTKKPCASLRQIESDPDADKSTLNHADHPNKAVQHRMLSRQEELKERARVLLEQARRDAAFKVGSKHGGSAAPALCSRQLNDQQDEERRRQLRERARQLIAEARCGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNIESDLDNPEQNSKVVDLRLKKLLEAQPQVANLLPSAAQKAVTEASEQGEKSGVEDLRTERLQKATERFRNPVVFNKDSTVRKTQLQSFSQYVENRPEMKRQRSIQEDTKRGTEEKAEITETQRKPSEDEKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVDKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCALQ", "length": 1231 }, "evidence": [ { "id": "A0A4X1WCR2", "url": "https://omabrowser.org/oma/group/A0A4X1WCR2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NDI1-1", "protein_name": "EH domain-binding protein 1", "gene_name": "EHBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASVWKRLQRVGKHASKFQFVASYQELMVECTKKWQPDKLVVVWTRRSRRKSSKAHSWQPGIKNPYRGVVVWPVPENIEITVTLFKDPHAEEFEDKEWTFVIENESPSGRRKALATSSINMKQYASPMPTQTDVKLKFKPLSKKVVSAALQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKITEIVNQLNALSSLDEDQDDCIKQANMRSAKSASSSEELINKLNFLDEAEKDLATVNSNPFDDPDAAELNPFGDPDSEEPITETASPRKTEDSFYNNSYNPFKEVQTPQYLNPFDEPEAFVTIKDSPPQSTKRKNIRPVDMSKYLYADSSKTEEEELDESNPFYEPKSTPPPNNLVNPVQELETERRVKRKAPAPPVLSPKTGVLNENTVSAGKDLSTSPKPSPIPSPVLGRKPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSGQELNVVQIEENSSKSTYKVGNYETDTNSSVDQEKFYAELSDLKREPELQQPISGAVDFLSQDDSVFVNDSGVGESESEHQTPDDHLSPSTASPYCRRTKSDTEPQKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSDKKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKLGYSYSRDLDLAKKKHASLRQTESDPDADRTTLNHADHSSKIVQHRLLSRQEELKERARVLLEQARRDAALKAGNKHNTNTATPFCNRQLSDQQDEERRRQLRERARQLIAEARSGVKMSELPSYGEMAAEKLKERSKASGDENDNIEIDTNEEIPEGFVVGGGDELTNLENDLDTPEQNSKLVDLKLKKLLEVQPQVANSPSSAAQKAVTESSEQDMKSGTEDLRTERLQKTTERFRNPVVFSKDSTVRKTQLQSFSQYIENRPEMKRQRSIQEDTKKGNEEKAAITETQRKPSEDEVLNKGFKDTSQYVVGELAALENEQKQIDTRAALVEKRLRYLMDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKRREQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHLERTLEQNKGKMAKKEEKCVLQ", "length": 1231 }, "evidence": [ { "id": "A0A4X1WCR2", "url": "https://omabrowser.org/oma/group/A0A4X1WCR2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" }, { "name": "endocytic recycling", "id": "GO:0032456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032456", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCR2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 560, "end_pos": 562, "annotation": "n_glycosylation_sequon" }, { "start_pos": 576, "end_pos": 578, "annotation": "n_glycosylation_sequon" }, { "start_pos": 617, "end_pos": 619, "annotation": "n_glycosylation_sequon" }, { "start_pos": 982, "end_pos": 984, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" }, { "id": "PS51848", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BMERB", "eco_id": "ECO_0000259", "start_pos": 1055, "end_pos": 1211, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1WCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 158, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A4X1WCR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCR2" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 443, "end_pos": 548, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 305, "end_pos": 307 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 560, "end_pos": 562 }, { "start_pos": 576, "end_pos": 578 }, { "start_pos": 617, "end_pos": 619 }, { "start_pos": 982, "end_pos": 984 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCW9-1", "uniprot_ac": "A0A4X1WCW9", "uniprot_id": "A0A4X1WCW9_PIG", "mass": { "chemical_mass": 20848.0, "monoisotopic_mass": 20848.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "SERTA domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1WCW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9", "locus": {} } ], "crossref": [ { "id": "A0A4X1WCW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR009263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47888:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47888:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15827", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15827", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W7A1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RYTFQIDSALPAYPTKVLTYTLTTSKVAYFKRKYAEEEDLHQDYHGYFPKHLILPEDRTCILKLSLEKLRFLEDPETYLRRSVLINNLLRKIHLETEKESYEYFKEAPCYKTAYSDTRKRLKFMVQECCSQSLYYEELHSYHIVPYASENAIYGMGYTSSHLEQNSQLLIYKMN", "length": 174, "header": "tr|A0A4X1WCW9-1|A0A4X1WCW9_PIG Isoform 1 of SERTA domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WCW9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A1/entry", "sequence": { "sequence": "QRRKSGREHRTPRVYETGVCAGLLASGPSSQAYPTKVLTYTLTTSKVAYFKRKYAEEEDLHQDYHGYFPKHLILPEDRTCILKLSLEKLRFLEDPETYLRRSVLINNLLRKIHLETEKESYEYFKEAPCYKTAYSDTRKRLKFMVQECCSQSLYYEELHSYHIVPYASENAIYGMGYTSSHLEQNSQLLIYKMN", "length": 194, "header": "tr|A0A4X1W7A1-1|A0A4X1WCW9_PIG Computationally mapped isoform of SERTA domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WCW9-1" }, "locus": { "chromosome": "1", "start_pos": 191054120, "end_pos": 191043679, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067336.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067336.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071358.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071358.1" } ] } }, { "isoform_ac": "A0A4X1WCW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9/entry", "sequence": { "sequence": "RYTFQIDSALPAYPTKVLTYTLTTSKVAYFKRKYAEEEDLHQDYHGYFPKHLILPEDRTCILKLSLEKLRFLEDPETYLRRSVLINNLLRKIHLETEKESYEYFKEAPCYKTAYSDTRKRLKFMVQECCSQSLYYEELHSYHIVPYASENAIYGMGYTSSHLEQNSQLLIYKMN", "length": 174, "header": "tr|A0A4X1WCW9-1|A0A4X1WCW9_PIG Isoform 1 of SERTA domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1WCW9-1" }, "locus": { "chromosome": "1", "start_pos": 191054120, "end_pos": 191044953, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082409.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082409.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059682.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059682.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7A1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7A1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WCW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW9" }, { "id": "PS51053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SERTA", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 100, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QA09-1", "uniprot_ac": "A0A5G2QA09", "uniprot_id": "A0A5G2QA09_PIG", "mass": { "chemical_mass": 23324.0, "monoisotopic_mass": 23324.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP107", "type": "recommended", "evidence": [ { "id": "A0A5G2QA09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ] }, { "name": "C6H1orf158", "type": "synonym", "evidence": [ { "id": "A0A5G2QA09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 107", "type": "synonym", "evidence": [ { "id": "A0A5G2QA09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W978", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W978#function" }, { "database": "UniProtKB", "id": "ARBA00035003", "url": "https://www.uniprot.org/uniprotkb/ARBA00035003#function" }, { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP107", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09", "locus": { "chromosome": "6", "start_pos": 72718232, "end_pos": 72705399, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003442", "url": "https://www.ensembl.org/id/ENSSSCG00000003442" } ] } } ], "crossref": [ { "id": "A0A5G2QA09", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA09", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003442", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003442", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR037662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31180:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31180:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W978", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W978", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W978-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W978-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQYFMAVNPQSFSTPSWKVETKYSTRVLTGNWVEERRKFTKATEKPQSIYRKEYVPFPGHRPDQISRWYSKRRVEGLPYKHLITHHQEPSHHHLISTYDDHYNRHNYNPGLPLLRTWNKHKLLWLPEKADFPLLAPPTNYGLYERLKQRWLPPPEATLRESMYTCSYPRPPSGAMSRREHAIPVPPPRLQPVPRF", "length": 195, "header": "tr|A0A5G2QA09-1|A0A5G2QA09_PIG Isoform 1 of Cilia and flagella associated protein 107 OS=Sus scrofa OX=9823 GN=CFAP107 PE=4 SV=1 CANONICAL=A0A5G2QA09-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W978-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W978/entry", "sequence": { "sequence": "MQYFMAVNPQSFSTPSWKVETKYSTRVLTGNWVEERRKGLPYKHLITHHQEPSHHHLISTYDDHYNRHNYNPGLPLLRTWNKHKLLWLPEKADFPLLAPPTNYGLYERLKQRWLPPPEATLRESMYTCSYPRPPSGAMSRREHAIPVPPPRLQPVPRF", "length": 158, "header": "tr|A0A4X1W978-1|A0A5G2QA09_PIG Computationally mapped isoform of Cilia and flagella associated protein 107 OS=Sus scrofa OX=9823 GN=CFAP107 PE=4 SV=1 CANONICAL=A0A5G2QA09-1" }, "locus": { "chromosome": "6", "start_pos": 72717228, "end_pos": 72705641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003822.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003822.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003735.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003735.4" } ] } }, { "isoform_ac": "A0A5G2QA09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09/entry", "sequence": { "sequence": "MQYFMAVNPQSFSTPSWKVETKYSTRVLTGNWVEERRKFTKATEKPQSIYRKEYVPFPGHRPDQISRWYSKRRVEGLPYKHLITHHQEPSHHHLISTYDDHYNRHNYNPGLPLLRTWNKHKLLWLPEKADFPLLAPPTNYGLYERLKQRWLPPPEATLRESMYTCSYPRPPSGAMSRREHAIPVPPPRLQPVPRF", "length": 195, "header": "tr|A0A5G2QA09-1|A0A5G2QA09_PIG Isoform 1 of Cilia and flagella associated protein 107 OS=Sus scrofa OX=9823 GN=CFAP107 PE=4 SV=1 CANONICAL=A0A5G2QA09-1" }, "locus": { "chromosome": "6", "start_pos": 72717228, "end_pos": 72705641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079969.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079969.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061185.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061185.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W978", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W978" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "pmid": "" }, { "name": "axonemal microtubule", "id": "GO:0005879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005879", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QA09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 195, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QA09-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA09" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCE2-1", "uniprot_ac": "A0A4X1WCE2", "uniprot_id": "A0A4X1WCE2_PIG", "mass": { "chemical_mass": 42545.0, "monoisotopic_mass": 42545.0 }, "refseq": { "ac": "XP_020918531", "name": "ELAV-like protein 2 isoform X12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918531" }, "gene_names": [ { "name": "ELAVL2", "type": "recommended", "evidence": [ { "id": "A0A4X1WCE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" } ] }, { "name": "ELAVL2", "type": "synonym", "evidence": [ { "id": "XP_020918531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918531" } ] } ], "protein_names": [ { "name": "ELAV-like protein", "type": "recommended", "evidence": [ { "id": "A0A4X1WCE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2/entry#names_and_taxonomy" } ] }, { "name": "ELAV-like protein 2 isoform X12", "type": "synonym", "evidence": [ { "id": "XP_020918531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918531" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELAVL2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2", "locus": { "chromosome": "1", "start_pos": 199135811, "end_pos": 198964132, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005130", "url": "https://www.ensembl.org/id/ENSSSCG00000005130" } ] } } ], "crossref": [ { "id": "A0A4X1WCE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005130", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005130", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12654", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12654", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12771", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12771", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12775", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12775", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153303", "url": "https://www.ncbi.nlm.nih.gov/gene/100153303", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10352", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10352", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020918531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918531", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZPK8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B810", "url": "https://www.uniprot.org/uniprotkb/A0A287B810", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B810-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B810-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNK9", "url": "https://www.uniprot.org/uniprotkb/F1SNK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 388, "header": "tr|A0A4X1WCE2-1|A0A4X1WCE2_PIG Isoform 1 of ELAV-like protein OS=Sus scrofa OX=9823 GN=ELAVL2 PE=1 SV=1 CANONICAL=A0A4X1WCE2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPK8/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 375, "header": "tr|A0A286ZPK8-1|A0A286ZPK8_PIG Computationally mapped isoform of ELAV-like protein OS=Sus scrofa OX=9823 GN=ELAVL2 PE=3 SV=3 CANONICAL=A0A4X1WCE2-1" }, "locus": { "chromosome": "1", "start_pos": 199133380, "end_pos": 199056059, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059033.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059033.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033536.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033536.3" } ] } }, { "isoform_ac": "A0A287B810-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B810/entry", "sequence": { "sequence": "MLTILYFLSTLQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 376, "header": "tr|A0A287B810-1|A0A287B810_PIG Computationally mapped isoform of ELAV-like protein OS=Sus scrofa OX=9823 GN=ELAVL2 PE=1 SV=2 CANONICAL=A0A4X1WCE2-1" }, "locus": { "chromosome": "1", "start_pos": 199133380, "end_pos": 199058370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055263.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055263.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052214.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052214.2" } ] } }, { "isoform_ac": "A0A4X1WCE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2/entry", "sequence": { "sequence": "MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 388, "header": "tr|A0A4X1WCE2-1|A0A4X1WCE2_PIG Isoform 1 of ELAV-like protein OS=Sus scrofa OX=9823 GN=ELAVL2 PE=1 SV=1 CANONICAL=A0A4X1WCE2-1" }, "locus": { "chromosome": "1", "start_pos": 199133380, "end_pos": 199056059, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047492.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047492.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038186.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038186.3" } ] } }, { "isoform_ac": "F1SNK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNK9/entry", "sequence": { "sequence": "LVTNQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA", "length": 369, "header": "tr|F1SNK9-1|F1SNK9_PIG Computationally mapped isoform of ELAV-like protein OS=Sus scrofa OX=9823 GN=ELAVL2 PE=1 SV=4 CANONICAL=A0A4X1WCE2-1" }, "locus": { "chromosome": "1", "start_pos": 199133380, "end_pos": 199058838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005656.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005656.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005515.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005515.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1WCE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCE2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 146, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 383, "end_pos": 385 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 53, "end_pos": 55 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCN9-1", "uniprot_ac": "A0A4X1WCN9", "uniprot_id": "A0A4X1WCN9_PIG", "mass": { "chemical_mass": 20717.0, "monoisotopic_mass": 20717.0 }, "refseq": { "ac": "XP_003126150", "name": "GTPase RhebL1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126150" }, "gene_names": [ { "name": "RHEBL1", "type": "recommended", "evidence": [ { "id": "A0A4X1WCN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ] }, { "name": "RHEBL1", "type": "synonym", "evidence": [ { "id": "XP_003126150", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126150" } ] } ], "protein_names": [ { "name": "GTPase RhebL1", "type": "recommended", "evidence": [ { "id": "A0A4X1WCN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9/entry#names_and_taxonomy" } ] }, { "name": "GTPase RhebL1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126150", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126150" } ] }, { "name": "Ras homolog enriched in brain-like protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1WCN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds GTP and exhibits intrinsic GTPase activity. May activate NF-kappa-B-mediated gene transcription. Promotes signal transduction through MTOR, activates RPS6KB1, and is a downstream target of the small GTPase-activating proteins TSC1 and TSC2.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9#function" }, { "database": "UniProtKB", "id": "ARBA00056542", "url": "https://www.uniprot.org/uniprotkb/ARBA00056542#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RHEBL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9", "locus": { "chromosome": "5", "start_pos": 15094240, "end_pos": 15097796, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000186", "url": "https://www.ensembl.org/id/ENSSSCG00000000186" } ] } } ], "crossref": [ { "id": "A0A4X1WCN9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCN9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04137", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04137", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525816", "url": "https://www.ncbi.nlm.nih.gov/gene/100525816", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525816", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525816", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQGHGKT", "url": "https://omabrowser.org/oma/group/HQGHGKT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WCN9", "url": "https://www.orthodb.org/?gene=A0A4X1WCN9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126150", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126150", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLVRYRKVVILGYRSVGKTSLAHQFVEGEFLEDYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRLPVVLVGNKADLSPDREVQAVEGKKLAESWGATFMESSARDNQLTQGIFTKVIQEIARVENSYGQEHRCHLM", "length": 183, "header": "tr|A0A4X1WCN9-1|A0A4X1WCN9_PIG Isoform 1 of GTPase RhebL1 OS=Sus scrofa OX=9823 GN=RHEBL1 PE=3 SV=1 CANONICAL=A0A4X1WCN9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WCN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9/entry", "sequence": { "sequence": "MPLVRYRKVVILGYRSVGKTSLAHQFVEGEFLEDYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRLPVVLVGNKADLSPDREVQAVEGKKLAESWGATFMESSARDNQLTQGIFTKVIQEIARVENSYGQEHRCHLM", "length": 183, "header": "tr|A0A4X1WCN9-1|A0A4X1WCN9_PIG Isoform 1 of GTPase RhebL1 OS=Sus scrofa OX=9823 GN=RHEBL1 PE=3 SV=1 CANONICAL=A0A4X1WCN9-1" }, "locus": { "chromosome": "5", "start_pos": 15097541, "end_pos": 15094834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000197.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000197.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000195.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000195.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525816", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525816", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FBP4-1", "protein_name": "GTPase RhebL1", "gene_name": "Rhebl1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPLVRYRKVAILGYRSVVRKDKRCECRWMIILQQSLVLKGKTSLAHQFVEGEFLEGYDPTVENTYSKTVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQIIKSLYQKLHEGHGKTRLPVVLVGNKADLSPDREVQLIQGKKLAQSWGATFMESSARENQLTQDVFIKVIQEIVRVENSYGQDRRCYLM", "length": 205 }, "evidence": [ { "id": "A0A4X1WCN9", "url": "https://omabrowser.org/oma/group/A0A4X1WCN9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7TNZ5-1", "protein_name": "GTPase RhebL1", "gene_name": "Rhebl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLVRYRKVAILGYRSVGKTSLAHQFVEGEFLKGYDPTVENTYSKTVTLGKDEFHLHLVDTAGQDKYSILPYSFIIGVHGYVLVYNVTSLRSFQIVKNLYQKLQEGHGKTRLPVLLVGNKADLSADREVQAVEGKKLAESWGATFMESSARDNQLIQDIFIRVIQEIARVENSYGQDRRCCLM", "length": 183 }, "evidence": [ { "id": "A0A4X1WCN9", "url": "https://omabrowser.org/oma/group/A0A4X1WCN9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8TAI7-1", "protein_name": "GTPase RhebL1", "gene_name": "RHEBL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM", "length": 183 }, "evidence": [ { "id": "A0A4X1WCN9", "url": "https://omabrowser.org/oma/group/A0A4X1WCN9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D8T3-1", "protein_name": "GTPase RhebL1", "gene_name": "Rhebl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLVRYRKVAILGYRSVGKTSLAHQFVEGEFLEGYDPTVENTYSKTVTLGKDEFHLHLVDTAGQDEYSILPYSLIIGVHGYVLVYSVNSLRSFQIVKNLYQKLHEGHGKTRLSVLLVGNKADLSPEREVQAVEGKKLAESWGAMFMESSARDNQLTQDVFIKVIQEIARVENSYGRQDRRCYLM", "length": 184 }, "evidence": [ { "id": "A0A4X1WCN9", "url": "https://omabrowser.org/oma/group/A0A4X1WCN9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "TOR signaling", "id": "GO:0031929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031929", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WD22-1", "uniprot_ac": "A0A4X1WD22", "uniprot_id": "A0A4X1WD22_PIG", "mass": { "chemical_mass": 21004.0, "monoisotopic_mass": 21004.0 }, "refseq": {}, "gene_names": [ { "name": "C2orf74", "type": "recommended", "evidence": [ { "id": "A0A4X1WD22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22" } ] } ], "protein_names": [ { "name": "Chromosome 3 C2orf74 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1WD22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WD22", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2orf74", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22", "locus": { "chromosome": "3", "start_pos": 80626159, "end_pos": 80648230, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008384", "url": "https://www.ensembl.org/id/ENSSSCG00000008384" } ] } } ], "crossref": [ { "id": "A0A4X1WD22", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WD22", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR027813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522433", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522433", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YLQKPPI", "url": "https://omabrowser.org/oma/group/YLQKPPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8D0KM35", "url": "https://www.orthodb.org/?gene=A0A8D0KM35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37882", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37882", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15484", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15484", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1WD22", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0KM35", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KM35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0KM35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KM35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLDNSTSFEITVFTFFIILLICFSFIFFLLVFFLYKCAQSRTDEETEKGPCTDANGGEDCTVANTEMINLEDQEKTLVPMRPGILVQRRVKEATGTLGNGEEVEDEEEDKIKEMQKLENAGENHQENDYLLKPPIPVTGSPSVIDNHKRPLKGVTFSREVIVVDLGKDNPIARSYTRLHKERK", "length": 185, "header": "tr|A0A4X1WD22-1|A0A4X1WD22_PIG Isoform 1 of Chromosome 3 C2orf74 homolog OS=Sus scrofa OX=9823 GN=C2orf74 PE=4 SV=1 CANONICAL=A0A4X1WD22-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22/entry", "sequence": { "sequence": "MSLLDNSTSFEITVFTFFIILLICFSFIFFLLVFFLYKCAQSRTDEETEKGPCTDANGGEDCTVANTEMINLEDQEKTLVPMRPGILVQRRVKEATGTLGNGEEVEDEEEDKIKEMQKLENAGENHQENDYLLKPPIPVTGSPSVIDNHKRPLKGVTFSREVIVVDLGKDNPIARSYTRLHKERK", "length": 185, "header": "tr|A0A4X1WD22-1|A0A4X1WD22_PIG Isoform 1 of Chromosome 3 C2orf74 homolog OS=Sus scrofa OX=9823 GN=C2orf74 PE=4 SV=1 CANONICAL=A0A4X1WD22-1" }, "locus": { "chromosome": "3", "start_pos": 80628910, "end_pos": 80626366, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023977.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023977.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019730.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019730.3" } ] } }, { "isoform_ac": "A0A8D0KM35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0KM35/entry", "sequence": { "sequence": "MINLEDQEKTLVPMRPGILVQRRVKEATGTLGNGEEVEDEEEDKIKEMQKLENAGENHQENDYLLKPPIPVTGSPSVIDNHKRPLKGVTFSREVIVVDLGKDNPIARSYTRLHKERK", "length": 117, "header": "tr|A0A8D0KM35-1|A0A8D0KM35_PIG Computationally mapped isoform of Chromosome 3 C2orf74 homolog OS=Sus scrofa OX=9823 GN=C2orf74 PE=4 SV=1 CANONICAL=A0A4X1WD22-1" }, "locus": { "chromosome": "3", "start_pos": 80628469, "end_pos": 80626366, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093407.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093407.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081074.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081074.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WD22", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522433", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522433", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2NLY0-1", "uniprot_ac": "A0A5G2NLY0", "uniprot_id": "A0A5G2NLY0_PIG", "mass": { "chemical_mass": 9593.0, "monoisotopic_mass": 9593.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2NLY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0", "locus": {} } ], "crossref": [ { "id": "A0A5G2NLY0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2NLY0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032853", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032853", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2168880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2454202", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2730905", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871796", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871809", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5690714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2NLY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AIRVTQSPASLGASLRDTVSITCRASQSVSSELAWYQQQPGKAPKLLIHAASTLQSGVPSQFRGSGSGTDFTLTISGLQTEDVRTYYCQQ", "length": 90, "header": "tr|A0A5G2NLY0-1|A0A5G2NLY0_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2NLY0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2NLY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0/entry", "sequence": { "sequence": "AIRVTQSPASLGASLRDTVSITCRASQSVSSELAWYQQQPGKAPKLLIHAASTLQSGVPSQFRGSGSGTDFTLTISGLQTEDVRTYYCQQ", "length": 90, "header": "tr|A0A5G2NLY0-1|A0A5G2NLY0_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2NLY0-1" }, "locus": { "chromosome": "AEMK02000525.1", "start_pos": 299064, "end_pos": 298795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046691.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046691.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031152.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031152.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-173623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "resource": "Reactome", "description": "Classical antibody-mediated complement activation" }, { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" }, { "id": "R-SSC-202733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "resource": "Reactome", "description": "Cell surface interactions at the vascular wall" }, { "id": "R-SSC-2029481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "resource": "Reactome", "description": "FCGR activation" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-2029485", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" }, { "id": "R-SSC-2168880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "resource": "Reactome", "description": "Scavenging of heme from plasma" }, { "id": "R-SSC-2454202", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "resource": "Reactome", "description": "Fc epsilon receptor (FCERI) signaling" }, { "id": "R-SSC-2730905", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "resource": "Reactome", "description": "Role of LAT2/NTAL/LAB on calcium mobilization" }, { "id": "R-SSC-2871796", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "resource": "Reactome", "description": "FCERI mediated MAPK activation" }, { "id": "R-SSC-2871809", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "resource": "Reactome", "description": "FCERI mediated Ca+2 mobilization" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-5690714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "resource": "Reactome", "description": "CD22 mediated BCR regulation" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" }, { "id": "R-SSC-983695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "resource": "Reactome", "description": "Antigen activates B Cell Receptor (BCR) leading to generation of second messengers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "pmid": "" }, { "name": "immunoglobulin complex", "id": "GO:0019814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019814", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2NLY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2NLY0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 90, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2NLY0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2NLY0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2NLY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2NLY0" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 90, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q6T5-1", "uniprot_ac": "A0A5G2Q6T5", "uniprot_id": "A0A5G2Q6T5_PIG", "mass": { "chemical_mass": 12730.0, "monoisotopic_mass": 12730.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RING-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q6T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q6T5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q6T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q6T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQAASLAQLQAEASCPICLDYLRDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLHGFSAFSQAFFGPVTTLIPQKATIIENKPFHSHLMFWGICNLDTRSKISIVYFFASVG", "length": 115, "header": "tr|A0A5G2Q6T5-1|A0A5G2Q6T5_PIG Isoform 1 of RING-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q6T5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q6T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5/entry", "sequence": { "sequence": "MAQAASLAQLQAEASCPICLDYLRDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLHGFSAFSQAFFGPVTTLIPQKATIIENKPFHSHLMFWGICNLDTRSKISIVYFFASVG", "length": 115, "header": "tr|A0A5G2Q6T5-1|A0A5G2Q6T5_PIG Isoform 1 of RING-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q6T5-1" }, "locus": { "chromosome": "8", "start_pos": 44177629, "end_pos": 44175521, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082388.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082388.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059728.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059728.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q6T5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q6T5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q6T5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q6T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6T5" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 56, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q6Z5-1", "uniprot_ac": "A0A5G2Q6Z5", "uniprot_id": "A0A5G2Q6Z5_PIG", "mass": { "chemical_mass": 35329.0, "monoisotopic_mass": 35329.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q6Z5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q6Z5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q6Z5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26450:SF424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26450:SF424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASASNYSSAPVSEFLLFCFPNYQSWQHWLSLPFSLLFLLALGANATLLVTIWLEESLHQPMYYLLSLIAILDMVLCLTVIPKVLAIFWFDLRAISFSACFLQMFIVNSFLPMESCTFMVMAYDRYVAICHPLRYPSIITDQFVARAAIFVVARNGLFSLPVPVLSSRLRYCAEKVIQNCICTNLSVSKLSCDDITFNRLYQFVAGWTLLGSDLVLIVLSYSFILKAVLRLRAEGAAAKALSTCGSHLILILFFSTVLLVLVITNLARRRIPPDVPILLNILHHLIPPALNPIVYGVRTKEVKQGIQKLLSRLQ", "length": 314, "header": "tr|A0A5G2Q6Z5-1|A0A5G2Q6Z5_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2Q6Z5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q6Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5/entry", "sequence": { "sequence": "MASASNYSSAPVSEFLLFCFPNYQSWQHWLSLPFSLLFLLALGANATLLVTIWLEESLHQPMYYLLSLIAILDMVLCLTVIPKVLAIFWFDLRAISFSACFLQMFIVNSFLPMESCTFMVMAYDRYVAICHPLRYPSIITDQFVARAAIFVVARNGLFSLPVPVLSSRLRYCAEKVIQNCICTNLSVSKLSCDDITFNRLYQFVAGWTLLGSDLVLIVLSYSFILKAVLRLRAEGAAAKALSTCGSHLILILFFSTVLLVLVITNLARRRIPPDVPILLNILHHLIPPALNPIVYGVRTKEVKQGIQKLLSRLQ", "length": 314, "header": "tr|A0A5G2Q6Z5-1|A0A5G2Q6Z5_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2Q6Z5-1" }, "locus": { "chromosome": "9", "start_pos": 3748821, "end_pos": 3747880, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073952.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073952.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059808.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059808.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to lipid", "id": "GO:0071396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071396", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q6Z5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q6Z5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q6Z5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q6Z5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 295, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 45, "end_pos": 47 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q749-1", "uniprot_ac": "A0A5G2Q749", "uniprot_id": "A0A5G2Q749_PIG", "mass": { "chemical_mass": 23245.0, "monoisotopic_mass": 23245.0 }, "refseq": {}, "gene_names": [ { "name": "C13orf46", "type": "recommended", "evidence": [ { "id": "A0A5G2Q749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749" } ] } ], "protein_names": [ { "name": "Chromosome 11 C13orf46 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2Q749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q749", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C13orf46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749", "locus": { "chromosome": "11", "start_pos": 78942261, "end_pos": 78949344, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009566", "url": "https://www.ensembl.org/id/ENSSSCG00000009566" } ] } } ], "crossref": [ { "id": "A0A5G2Q749", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q749", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009566", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009566", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR39223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39223:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39223:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27972", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27972", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q749", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q749-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN31", "url": "https://www.uniprot.org/uniprotkb/F1RN31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN31-1", "url": "https://www.uniprot.org/uniprotkb/F1RN31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKDPSAAHRRHRLGPGAPPLAVGPGHFKAASEMTDLQRSRSVGGLHQKGDPPSCIKRLCKELESEDQGKDLKSDAEDASCQPNLEEDKQEQHQDALGKEDREGDRAEPEAVNTPEASVQEEQDRGQSVDKCTPEAKEQEPESIKLADLLEKEKPSVFVEIDLGDHAEEVITCAMKEEKPSQLDMGDLSEDETGWVCCIPYSTRKKAKESA", "length": 211, "header": "tr|A0A5G2Q749-1|A0A5G2Q749_PIG Isoform 1 of Chromosome 11 C13orf46 homolog OS=Sus scrofa OX=9823 GN=C13orf46 PE=1 SV=2 CANONICAL=A0A5G2Q749-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q749-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749/entry", "sequence": { "sequence": "MEKDPSAAHRRHRLGPGAPPLAVGPGHFKAASEMTDLQRSRSVGGLHQKGDPPSCIKRLCKELESEDQGKDLKSDAEDASCQPNLEEDKQEQHQDALGKEDREGDRAEPEAVNTPEASVQEEQDRGQSVDKCTPEAKEQEPESIKLADLLEKEKPSVFVEIDLGDHAEEVITCAMKEEKPSQLDMGDLSEDETGWVCCIPYSTRKKAKESA", "length": 211, "header": "tr|A0A5G2Q749-1|A0A5G2Q749_PIG Isoform 1 of Chromosome 11 C13orf46 homolog OS=Sus scrofa OX=9823 GN=C13orf46 PE=1 SV=2 CANONICAL=A0A5G2Q749-1" }, "locus": { "chromosome": "11", "start_pos": 78949145, "end_pos": 78942276, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089461.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089461.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059868.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059868.2" } ] } }, { "isoform_ac": "F1RN31-1", "url": "https://www.uniprot.org/uniprotkb/F1RN31/entry", "sequence": { "sequence": "MEKDPSAAHRRHRLGPGAPPLAVGPGHFKAASEMTDLQRSRSVGGLHQKGDPPSCIKRLCKELESEDQGKDLKSDAEDASCQPNLEEDKQEQHQDALGKEDREGDRAEPEAVNTPEASVQEEQDRGQSVDKCTPEAKVSSPKPISHASGFHPQKPSVFVEIDLGDHAEEVITCAMKEEKPSQLDMGDLSEDETGWVCCIPYSTRKKAKESA", "length": 211, "header": "tr|F1RN31-1|F1RN31_PIG Computationally mapped isoform of Chromosome 11 C13orf46 homolog OS=Sus scrofa OX=9823 GN=C13orf46 PE=1 SV=5 CANONICAL=A0A5G2Q749-1" }, "locus": { "chromosome": "11", "start_pos": 78949145, "end_pos": 78942276, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010487.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010487.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010215.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010215.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q749", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q749" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q749-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 211, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q749-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q749" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7A1-1", "uniprot_ac": "A0A5G2Q7A1", "uniprot_id": "A0A5G2Q7A1_PIG", "mass": { "chemical_mass": 12708.0, "monoisotopic_mass": 12708.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7A1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7A1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046271", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046271", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q7A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRNLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENGLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q7A1-1|A0A5G2Q7A1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7A1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRNLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENGLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q7A1-1|A0A5G2Q7A1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7A1-1" }, "locus": { "chromosome": "13", "start_pos": 142997174, "end_pos": 142996839, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077827.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077827.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7A1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7A1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7A1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7A1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7D9-1", "uniprot_ac": "A0A5G2Q7D9", "uniprot_id": "A0A5G2Q7D9_PIG", "mass": { "chemical_mass": 23375.0, "monoisotopic_mass": 23375.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7D9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7D9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7D9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7D9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042110", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042110", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q7D9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDICVHVSFSVKVLSACMPRSGIAGSYGGSMFSFLRYLHTVFHSGCTNLHFHQQCRRVPFSPHPLQRVFVDLLMMAILTGVRWYLVLICISLIISDVEGFFMCLLAICMSSLEKCLFRSSAHFSIELFIFLLLSCMSYLYILEPSLVVSFETIFSHSMGCLLGFFFMVSFTVQKLLSLIRSHWFIFVLFLLLWETDLSKYLYS", "length": 203, "header": "tr|A0A5G2Q7D9-1|A0A5G2Q7D9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7D9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9/entry", "sequence": { "sequence": "MDICVHVSFSVKVLSACMPRSGIAGSYGGSMFSFLRYLHTVFHSGCTNLHFHQQCRRVPFSPHPLQRVFVDLLMMAILTGVRWYLVLICISLIISDVEGFFMCLLAICMSSLEKCLFRSSAHFSIELFIFLLLSCMSYLYILEPSLVVSFETIFSHSMGCLLGFFFMVSFTVQKLLSLIRSHWFIFVLFLLLWETDLSKYLYS", "length": 203, "header": "tr|A0A5G2Q7D9-1|A0A5G2Q7D9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7D9-1" }, "locus": { "chromosome": "9", "start_pos": 8699683, "end_pos": 8699075, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081035.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081035.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059720.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059720.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7D9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7D9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 203, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7D9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7D9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7F8-1", "uniprot_ac": "A0A5G2Q7F8", "uniprot_id": "A0A5G2Q7F8_PIG", "mass": { "chemical_mass": 10445.0, "monoisotopic_mass": 10445.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7F8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7F8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044779", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044779", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2168880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2454202", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2730905", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871796", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871809", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5690714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AIQLTQSPASLAASLGDTVSITCRASQSINKWLVWYQQQPGKAPKLLIYSASTLQSGVPCGFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSAPPTVL", "length": 99, "header": "tr|A0A5G2Q7F8-1|A0A5G2Q7F8_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2Q7F8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8/entry", "sequence": { "sequence": "AIQLTQSPASLAASLGDTVSITCRASQSINKWLVWYQQQPGKAPKLLIYSASTLQSGVPCGFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSAPPTVL", "length": 99, "header": "tr|A0A5G2Q7F8-1|A0A5G2Q7F8_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2Q7F8-1" }, "locus": { "chromosome": "3", "start_pos": 57229510, "end_pos": 57229214, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089978.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089978.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060009.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060009.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-173623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "resource": "Reactome", "description": "Classical antibody-mediated complement activation" }, { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" }, { "id": "R-SSC-202733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "resource": "Reactome", "description": "Cell surface interactions at the vascular wall" }, { "id": "R-SSC-2029481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "resource": "Reactome", "description": "FCGR activation" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-2029485", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" }, { "id": "R-SSC-2168880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "resource": "Reactome", "description": "Scavenging of heme from plasma" }, { "id": "R-SSC-2454202", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "resource": "Reactome", "description": "Fc epsilon receptor (FCERI) signaling" }, { "id": "R-SSC-2730905", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "resource": "Reactome", "description": "Role of LAT2/NTAL/LAB on calcium mobilization" }, { "id": "R-SSC-2871796", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "resource": "Reactome", "description": "FCERI mediated MAPK activation" }, { "id": "R-SSC-2871809", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "resource": "Reactome", "description": "FCERI mediated Ca+2 mobilization" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-5690714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "resource": "Reactome", "description": "CD22 mediated BCR regulation" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" }, { "id": "R-SSC-983695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "resource": "Reactome", "description": "Antigen activates B Cell Receptor (BCR) leading to generation of second messengers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "immunoglobulin complex", "id": "GO:0019814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019814", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7F8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7F8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 99, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7F8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7F8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7F8" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 99, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7G0-1", "uniprot_ac": "A0A5G2Q7G0", "uniprot_id": "A0A5G2Q7G0_PIG", "mass": { "chemical_mass": 70104.0, "monoisotopic_mass": 70104.0 }, "refseq": {}, "gene_names": [ { "name": "C16H5orf34", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" } ] }, { "name": "C5orf34", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" } ] } ], "protein_names": [ { "name": "Chromosome 16 C5orf34 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C16H5orf34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7G0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016876", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016876", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34531", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34531", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34531:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34531:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22834", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22834", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q7G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMG4", "url": "https://www.uniprot.org/uniprotkb/F1SMG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMG4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVQMVLYEDDSVQVQYVDGSRLQLSPCGSEFLFEKAPPISAHPLEQPERIRQRTHFVISTYREQLQRALDFRNSFATCPFLSANIIPSERKKRIFIDITEVRWPGLDTDDSMICMQSGTVKVSSLDGHAYLCLPKSQHEFTVHFLCKVSQKPDSLVILSEKNNQARKDKLVEKAGKIYTYGSLSGQRLKNKENELYYEIMKSRDPLEKKSCINGTEGREELASPVTKHTPIYTWVKQCCSVDSCPEEWKYPLFLALCFQNKISSMSGIDAHVTQERILTSEISKEGGREVSVLPALLLSCPVPHLHRWNFCDSLSQRQFGEEYSYPELVKVVWYKGTIYRLNHKNMNSIEIYPGDGSVFKSEGAYLGNYFTYYSIQEGSEERQEKTYSVNNLPPDRPGRMFSVCSLMEQATVPGINDSNILPLLLRESVIPTVGRFLAYSDDKVHAIFLDGITLTLNWNFSTFIQKRQVNRGLNLGWCKLTFPDGQDKLIQIQHPGPYERYVATVISWCRRLTQTSQKEIPRHPSSSFPEENWSVASELEKIQKFNLLLENSGVLNHISNKKNEQSSDHYKPKSSELLLKEVNENSVSVALRKTSEILQDIDSLLSNSKR", "length": 613, "header": "tr|A0A5G2Q7G0-1|A0A5G2Q7G0_PIG Isoform 1 of Chromosome 16 C5orf34 homolog OS=Sus scrofa OX=9823 GN=C16H5orf34 PE=4 SV=2 CANONICAL=A0A5G2Q7G0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0/entry", "sequence": { "sequence": "MAAEVQMVLYEDDSVQVQYVDGSRLQLSPCGSEFLFEKAPPISAHPLEQPERIRQRTHFVISTYREQLQRALDFRNSFATCPFLSANIIPSERKKRIFIDITEVRWPGLDTDDSMICMQSGTVKVSSLDGHAYLCLPKSQHEFTVHFLCKVSQKPDSLVILSEKNNQARKDKLVEKAGKIYTYGSLSGQRLKNKENELYYEIMKSRDPLEKKSCINGTEGREELASPVTKHTPIYTWVKQCCSVDSCPEEWKYPLFLALCFQNKISSMSGIDAHVTQERILTSEISKEGGREVSVLPALLLSCPVPHLHRWNFCDSLSQRQFGEEYSYPELVKVVWYKGTIYRLNHKNMNSIEIYPGDGSVFKSEGAYLGNYFTYYSIQEGSEERQEKTYSVNNLPPDRPGRMFSVCSLMEQATVPGINDSNILPLLLRESVIPTVGRFLAYSDDKVHAIFLDGITLTLNWNFSTFIQKRQVNRGLNLGWCKLTFPDGQDKLIQIQHPGPYERYVATVISWCRRLTQTSQKEIPRHPSSSFPEENWSVASELEKIQKFNLLLENSGVLNHISNKKNEQSSDHYKPKSSELLLKEVNENSVSVALRKTSEILQDIDSLLSNSKR", "length": 613, "header": "tr|A0A5G2Q7G0-1|A0A5G2Q7G0_PIG Isoform 1 of Chromosome 16 C5orf34 homolog OS=Sus scrofa OX=9823 GN=C16H5orf34 PE=4 SV=2 CANONICAL=A0A5G2Q7G0-1" }, "locus": { "chromosome": "16", "start_pos": 28089917, "end_pos": 28060496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077317.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077317.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060014.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060014.2" } ] } }, { "isoform_ac": "F1SMG4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMG4/entry", "sequence": { "sequence": "MICMQSGTVKVSSLDGHAYLCLPKSQHEFTVHFLCKVSQKPDSLVILSEKNNQARKDKLVEKAGKIYTYGSLSGQRLKNKENELYYEIMKSRDPLEKKSCINGTEGREELASPVTKHTPIYTWVKQCCSVDSCPEEWKYPLFLALCFQNKISSMSGIDAHVTQERILTSEISKEGGREVSVLPRPCY", "length": 187, "header": "tr|F1SMG4-1|F1SMG4_PIG Computationally mapped isoform of Chromosome 16 C5orf34 homolog OS=Sus scrofa OX=9823 GN=C16H5orf34 PE=4 SV=4 CANONICAL=A0A5G2Q7G0-1" }, "locus": { "chromosome": "16", "start_pos": 28075333, "end_pos": 28075114, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018380.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018380.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017884.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017884.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7G0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 613, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7G0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" }, { "id": "PF22834", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22834" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C5orf34-like", "eco_id": "ECO_0000259", "start_pos": 332, "end_pos": 414, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" }, { "id": "PF15016", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C5orf34-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 424, "end_pos": 513, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" }, { "id": "PF15025", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15025" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C5orf34-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 76, "start_aa": "Met", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q7G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G0" }, { "id": "PF22833", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22833" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C5orf34-like second", "eco_id": "ECO_0000259", "start_pos": 120, "end_pos": 258, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 216, "end_pos": 218 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 462, "end_pos": 464 }, { "start_pos": 535, "end_pos": 537 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7G2-1", "uniprot_ac": "A0A5G2Q7G2", "uniprot_id": "A0A5G2Q7G2_PIG", "mass": { "chemical_mass": 14766.0, "monoisotopic_mass": 14766.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7G2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045604", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045604", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q7G2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMRVHVSLLSSILSGYMPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSSHPLQYFLFVDLLIMAILTGVRWYLMVVLICISLMISDVEHFFMYLLAICISSLENSLFRSFAHFSIG", "length": 129, "header": "tr|A0A5G2Q7G2-1|A0A5G2Q7G2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7G2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2/entry", "sequence": { "sequence": "MNMRVHVSLLSSILSGYMPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSSHPLQYFLFVDLLIMAILTGVRWYLMVVLICISLMISDVEHFFMYLLAICISSLENSLFRSFAHFSIG", "length": 129, "header": "tr|A0A5G2Q7G2-1|A0A5G2Q7G2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7G2-1" }, "locus": { "chromosome": "9", "start_pos": 127282061, "end_pos": 127281841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087222.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087222.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059745.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059745.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7G2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7G2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7G9-1", "uniprot_ac": "A0A5G2Q7G9", "uniprot_id": "A0A5G2Q7G9_PIG", "mass": { "chemical_mass": 115857.0, "monoisotopic_mass": 115857.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7G9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042027", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042027", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q7G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDFIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDAKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTLFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 989, "header": "tr|A0A5G2Q7G9-1|A0A5G2Q7G9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7G9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDFIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDAKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTLFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 989, "header": "tr|A0A5G2Q7G9-1|A0A5G2Q7G9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7G9-1" }, "locus": { "chromosome": "8", "start_pos": 65060070, "end_pos": 65056708, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090640.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090640.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059755.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059755.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 839, "end_pos": 841, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7G9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 989, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7G9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7G9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7G9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 489, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 839, "end_pos": 841 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7J3-1", "uniprot_ac": "A0A5G2Q7J3", "uniprot_id": "A0A5G2Q7J3_PIG", "mass": { "chemical_mass": 11711.0, "monoisotopic_mass": 11711.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7J3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7J3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044924", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044924", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q7J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSYDSSIFSFLRNLCIVFHSGCTNLYSHQPCRRVPFSPYPLQYLLFVDLLMMAILTSVRWYLIVVLNCISLIISDVEHFFKCLLAIICLLFFFF", "length": 101, "header": "tr|A0A5G2Q7J3-1|A0A5G2Q7J3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7J3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3/entry", "sequence": { "sequence": "MPRSGIAGSYDSSIFSFLRNLCIVFHSGCTNLYSHQPCRRVPFSPYPLQYLLFVDLLMMAILTSVRWYLIVVLNCISLIISDVEHFFKCLLAIICLLFFFF", "length": 101, "header": "tr|A0A5G2Q7J3-1|A0A5G2Q7J3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7J3-1" }, "locus": { "chromosome": "1", "start_pos": 251829042, "end_pos": 251828740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084813.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084813.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060054.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060054.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7J3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7J3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7J3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7J3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7M4-1", "uniprot_ac": "A0A5G2Q7M4", "uniprot_id": "A0A5G2Q7M4_PIG", "mass": { "chemical_mass": 12851.0, "monoisotopic_mass": 12851.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7M4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7M4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7M4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7M4", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2Q7M4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q7M4-1|A0A5G2Q7M4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7M4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q7M4-1|A0A5G2Q7M4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7M4-1" }, "locus": { "chromosome": "14", "start_pos": 18621509, "end_pos": 18621174, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085714.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085714.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060094.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060094.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7M4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7M4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7M4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7M4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7M9-1", "uniprot_ac": "A0A5G2Q7M9", "uniprot_id": "A0A5G2Q7M9_PIG", "mass": { "chemical_mass": 10517.0, "monoisotopic_mass": 10517.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7M9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7M9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048487", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048487", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q7M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFWDWATEPDAPVPLPLTTAHQNMAAKIFCCCCYPCEGSSTTVGSHNNTTCQQHHTRTSNLNTDPHKDNRQKRHPHHHPNILAMKVYNLGRP", "length": 93, "header": "tr|A0A5G2Q7M9-1|A0A5G2Q7M9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7M9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9/entry", "sequence": { "sequence": "MGFWDWATEPDAPVPLPLTTAHQNMAAKIFCCCCYPCEGSSTTVGSHNNTTCQQHHTRTSNLNTDPHKDNRQKRHPHHHPNILAMKVYNLGRP", "length": 93, "header": "tr|A0A5G2Q7M9-1|A0A5G2Q7M9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7M9-1" }, "locus": { "chromosome": "1", "start_pos": 255201768, "end_pos": 255200830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078436.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078436.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059830.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059830.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7M9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 93, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7M9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7M9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 }, { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7N4-1", "uniprot_ac": "A0A5G2Q7N4", "uniprot_id": "A0A5G2Q7N4_PIG", "mass": { "chemical_mass": 148804.0, "monoisotopic_mass": 148804.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7N4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7N4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050729", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050729", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q7N4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIVNIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q7N4-1|A0A5G2Q7N4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7N4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7N4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIVNIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q7N4-1|A0A5G2Q7N4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7N4-1" }, "locus": { "chromosome": "8", "start_pos": 52059425, "end_pos": 52055610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085366.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085366.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060109.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060109.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7N4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7N4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7N4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N4" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7N6-1", "uniprot_ac": "A0A5G2Q7N6", "uniprot_id": "A0A5G2Q7N6_PIG", "mass": { "chemical_mass": 20855.0, "monoisotopic_mass": 20855.0 }, "refseq": {}, "gene_names": [ { "name": "RPL11", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL5", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L11", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6", "locus": { "chromosome": "6", "start_pos": 81530436, "end_pos": 81522742, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024260", "url": "https://www.ensembl.org/id/ENSSSCG00000024260" } ] } } ], "crossref": [ { "id": "A0A5G2Q7N6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7N6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024260", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024260", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022803", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11994", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11994", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00673", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00673", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KRKPHAGTSHPQALPQHLRWGEWRQTDPGSQGAGAAHRPDSCVSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKVNLICLRKWWSVVLVNGVGIWG", "length": 184, "header": "tr|A0A5G2Q7N6-1|A0A5G2Q7N6_PIG Isoform 1 of Large ribosomal subunit protein uL5 OS=Sus scrofa OX=9823 GN=RPL11 PE=3 SV=2 CANONICAL=A0A5G2Q7N6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6/entry", "sequence": { "sequence": "KRKPHAGTSHPQALPQHLRWGEWRQTDPGSQGAGAAHRPDSCVSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKVNLICLRKWWSVVLVNGVGIWG", "length": 184, "header": "tr|A0A5G2Q7N6-1|A0A5G2Q7N6_PIG Isoform 1 of Large ribosomal subunit protein uL5 OS=Sus scrofa OX=9823 GN=RPL11 PE=3 SV=2 CANONICAL=A0A5G2Q7N6-1" }, "locus": { "chromosome": "6", "start_pos": 81526492, "end_pos": 81523524, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088005.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088005.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060114.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060114.2" } ] } }, { "isoform_ac": "A0A5G2QRK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK2/entry", "sequence": { "sequence": "KRKPHAGTSHPQALPQHLRWGEWRQTDPGSQGAGAAHRPDSCVSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK", "length": 171, "header": "tr|A0A5G2QRK2-1|A0A5G2QRK2_PIG Computationally mapped isoform of Large ribosomal subunit protein uL5 OS=Sus scrofa OX=9823 GN=RPL11 PE=1 SV=1 CANONICAL=A0A5G2Q7N6-1" }, "locus": { "chromosome": "6", "start_pos": 81526877, "end_pos": 81523524, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071333.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071333.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067550.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067550.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7N6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7N6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7N6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N6" }, { "id": "PF00673", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00673" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 158, "start_aa": "Lys", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7Q6-1", "uniprot_ac": "A0A5G2Q7Q6", "uniprot_id": "A0A5G2Q7Q6_PIG", "mass": { "chemical_mass": 13721.0, "monoisotopic_mass": 13721.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7Q6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7Q6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000042117", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042117", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2168880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2454202", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2730905", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871796", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871809", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5690714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVRAPMPLLGLLLLWLSGARSATQLTQSPASLAASLGDTVSITCQASQSVSSNLDWYQQQPRKAPKLLIYKASTLQSGVPSRFKGSGSGTDYTLTISGLQAEDVATYYCMQNSHPHTVLKPGTKTCSA", "length": 129, "header": "tr|A0A5G2Q7Q6-1|A0A5G2Q7Q6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7Q6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6/entry", "sequence": { "sequence": "MDVRAPMPLLGLLLLWLSGARSATQLTQSPASLAASLGDTVSITCQASQSVSSNLDWYQQQPRKAPKLLIYKASTLQSGVPSRFKGSGSGTDYTLTISGLQAEDVATYYCMQNSHPHTVLKPGTKTCSA", "length": 129, "header": "tr|A0A5G2Q7Q6-1|A0A5G2Q7Q6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7Q6-1" }, "locus": { "chromosome": "AEMK02000525.1", "start_pos": 189132, "end_pos": 183556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079582.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079582.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060144.2" } ] } }, { "isoform_ac": "A0A5G2QDC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC4/entry", "sequence": { "sequence": "NISSLTFLNMCFLFPLAASSGATVLTQSPAFLSKTPGEKATITCQASQGLSSKLHWYQQKPNQALKLLVTSVSQTMSRIPSHFRGSGSGTDFTLTIRGLERNSHPHTVLKPGTKTCSA", "length": 118, "header": "tr|A0A5G2QDC4-1|A0A5G2QDC4_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q7Q6-1" }, "locus": { "chromosome": "AEMK02000525.1", "start_pos": 189486, "end_pos": 183556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086121.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086121.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061610.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061610.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-173623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "resource": "Reactome", "description": "Classical antibody-mediated complement activation" }, { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" }, { "id": "R-SSC-202733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "resource": "Reactome", "description": "Cell surface interactions at the vascular wall" }, { "id": "R-SSC-2029481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "resource": "Reactome", "description": "FCGR activation" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-2029485", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" }, { "id": "R-SSC-2168880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "resource": "Reactome", "description": "Scavenging of heme from plasma" }, { "id": "R-SSC-2454202", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2454202", "resource": "Reactome", "description": "Fc epsilon receptor (FCERI) signaling" }, { "id": "R-SSC-2730905", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730905", "resource": "Reactome", "description": "Role of LAT2/NTAL/LAB on calcium mobilization" }, { "id": "R-SSC-2871796", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "resource": "Reactome", "description": "FCERI mediated MAPK activation" }, { "id": "R-SSC-2871809", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871809", "resource": "Reactome", "description": "FCERI mediated Ca+2 mobilization" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-5690714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690714", "resource": "Reactome", "description": "CD22 mediated BCR regulation" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" }, { "id": "R-SSC-983695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "resource": "Reactome", "description": "Antigen activates B Cell Receptor (BCR) leading to generation of second messengers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "pmid": "" }, { "name": "immunoglobulin complex", "id": "GO:0019814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019814", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7Q6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7Q6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7Q6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 110, "start_aa": "Thr", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7V0-1", "uniprot_ac": "A0A5G2Q7V0", "uniprot_id": "A0A5G2Q7V0_PIG", "mass": { "chemical_mass": 13912.0, "monoisotopic_mass": 13912.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7V0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7V0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050140", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050140", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06848", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06848", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11715", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11715", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11715:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11715:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIFYCVQRKKMDPRKHGAASSWEFVGCDPQSMRGWGLRMGAIELLHTSSTLLSLRKFTEKREWIKTENGFGTVGISNFAQEALGNVYCSLPEVGTKFNKQEEFGALESVKAASELLLLYKEK", "length": 123, "header": "tr|A0A5G2Q7V0-1|A0A5G2Q7V0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7V0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0/entry", "sequence": { "sequence": "MKIFYCVQRKKMDPRKHGAASSWEFVGCDPQSMRGWGLRMGAIELLHTSSTLLSLRKFTEKREWIKTENGFGTVGISNFAQEALGNVYCSLPEVGTKFNKQEEFGALESVKAASELLLLYKEK", "length": 123, "header": "tr|A0A5G2Q7V0-1|A0A5G2Q7V0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7V0-1" }, "locus": { "chromosome": "7", "start_pos": 73327647, "end_pos": 73327279, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067709.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067709.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060204.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0" } ], "pmid": "" }, { "name": "glycine cleavage complex", "id": "GO:0005960", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005960", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycine decarboxylation via glycine cleavage system", "id": "GO:0019464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019464", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7V0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7V0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 123, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7V0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7V0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7X6-1", "uniprot_ac": "A0A5G2Q7X6", "uniprot_id": "A0A5G2Q7X6_PIG", "mass": { "chemical_mass": 21684.0, "monoisotopic_mass": 21684.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q7X6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7X6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q7X6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7X6", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2Q7X6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYCDESEWFSWPWMRPSSLCGRAGSRGVSAGPLPGARPRPGPRPRSSPGSPARRCAAASRPLLPCCPPPAGARPSPPPCSGGGGTGRVKGRGGARAGPRAWGWRASGHLALGLRLLAAAFAELRLQPLVLRRQVLQLLLQRRPLRLHAVQQVAVDVVLRADGRGSRTRRGAAEPLPSPSPAAAHLRLELHHALPQLAALGQSLGLA", "length": 206, "header": "tr|A0A5G2Q7X6-1|A0A5G2Q7X6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7X6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6/entry", "sequence": { "sequence": "MYCDESEWFSWPWMRPSSLCGRAGSRGVSAGPLPGARPRPGPRPRSSPGSPARRCAAASRPLLPCCPPPAGARPSPPPCSGGGGTGRVKGRGGARAGPRAWGWRASGHLALGLRLLAAAFAELRLQPLVLRRQVLQLLLQRRPLRLHAVQQVAVDVVLRADGRGSRTRRGAAEPLPSPSPAAAHLRLELHHALPQLAALGQSLGLA", "length": 206, "header": "tr|A0A5G2Q7X6-1|A0A5G2Q7X6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q7X6-1" }, "locus": { "chromosome": "2", "start_pos": 71334924, "end_pos": 71334307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089862.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089862.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059946.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059946.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7X6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7X6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7X6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 206, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7X6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7X6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q808-1", "uniprot_ac": "A0A5G2Q808", "uniprot_id": "A0A5G2Q808_PIG", "mass": { "chemical_mass": 36276.0, "monoisotopic_mass": 36276.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MAGE domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q808", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q808", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q808", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q808", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048272", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048272", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF81", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF81", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q808", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q808-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLRQQNELRKMENELEDPIEDHSLVEAQLHWGEEEPTLPSSSSSSVSSSYSVLFLETLEEEADPETPSPPQDPQGVCPSPAPVAPTPLSQSKDDASGSQDDEGPSPSHDQEHADASQSGSLHLKVADLVEFLLLKYCAKEPTTQAEMLSVVLRDAQDHFPEVLSQASELIQLVFGLDVKEVDPSEHTYVLVPTLGLTWDGVLSDGQSLPKTGLLVVLLGVILLQGECAPEEEVWAALDRMGVCAGKEHCIYGEPRELLTQVWVQEGYLEYHQVPHSDPARYEFLWGPRAHAETSKLQVLERMFTVSEKDPRSCPSLSEEAMIEEEEGS", "length": 329, "header": "tr|A0A5G2Q808-1|A0A5G2Q808_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q808-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q808-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808/entry", "sequence": { "sequence": "MPLRQQNELRKMENELEDPIEDHSLVEAQLHWGEEEPTLPSSSSSSVSSSYSVLFLETLEEEADPETPSPPQDPQGVCPSPAPVAPTPLSQSKDDASGSQDDEGPSPSHDQEHADASQSGSLHLKVADLVEFLLLKYCAKEPTTQAEMLSVVLRDAQDHFPEVLSQASELIQLVFGLDVKEVDPSEHTYVLVPTLGLTWDGVLSDGQSLPKTGLLVVLLGVILLQGECAPEEEVWAALDRMGVCAGKEHCIYGEPRELLTQVWVQEGYLEYHQVPHSDPARYEFLWGPRAHAETSKLQVLERMFTVSEKDPRSCPSLSEEAMIEEEEGS", "length": 329, "header": "tr|A0A5G2Q808-1|A0A5G2Q808_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q808-1" }, "locus": { "chromosome": "X", "start_pos": 124020407, "end_pos": 124019421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082651.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082651.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060284.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060284.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 87, "start_aa": "Thr", "end_pos": 87, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q808", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q808", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q808", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q808-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 329, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q808-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q808" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q808", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q808" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 321, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 87 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q814-1", "uniprot_ac": "A0A5G2Q814", "uniprot_id": "A0A5G2Q814_PIG", "mass": { "chemical_mass": 7243.0, "monoisotopic_mass": 7243.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q814", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q814", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q814", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q814", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047877", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047877", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q814", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q814-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSAYSDNFTSSLPIWISFISFACLIVVARTSDTTSNKSGESGQASLSCSSGKAFSFSRLSIMFAVGLS", "length": 69, "header": "tr|A0A5G2Q814-1|A0A5G2Q814_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q814-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q814-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814/entry", "sequence": { "sequence": "MSSAYSDNFTSSLPIWISFISFACLIVVARTSDTTSNKSGESGQASLSCSSGKAFSFSRLSIMFAVGLS", "length": 69, "header": "tr|A0A5G2Q814-1|A0A5G2Q814_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q814-1" }, "locus": { "chromosome": "13", "start_pos": 116573337, "end_pos": 116573131, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082026.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082026.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060294.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060294.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q814", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q814" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q814-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 69, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q814-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q814" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q860-1", "uniprot_ac": "A0A5G2Q860", "uniprot_id": "A0A5G2Q860_PIG", "mass": { "chemical_mass": 19037.0, "monoisotopic_mass": 19037.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q860", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q860", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q860", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q860", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042192", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042192", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q860", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q860-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGNAGSNGSSMFSFLRHLHTAFHSGCTNLQSHQQCTRVPFSPHPLQHLLFIDFWMMAILAGVRWYLRVVLICISLIMSDVEHPFMCFSAICMSSLENCLFRSSAHFLMALFVFWYGAAEVVYKFWRLIPCQSIHLQRFYPILWVVFLCCLGFPLLCRNFEV", "length": 164, "header": "tr|A0A5G2Q860-1|A0A5G2Q860_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q860-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q860-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860/entry", "sequence": { "sequence": "MPRSGNAGSNGSSMFSFLRHLHTAFHSGCTNLQSHQQCTRVPFSPHPLQHLLFIDFWMMAILAGVRWYLRVVLICISLIMSDVEHPFMCFSAICMSSLENCLFRSSAHFLMALFVFWYGAAEVVYKFWRLIPCQSIHLQRFYPILWVVFLCCLGFPLLCRNFEV", "length": 164, "header": "tr|A0A5G2Q860-1|A0A5G2Q860_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q860-1" }, "locus": { "chromosome": "14", "start_pos": 48605542, "end_pos": 48605200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069366.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069366.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060354.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q860", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q860" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q860-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 164, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q860-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q860" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q867-1", "uniprot_ac": "A0A5G2Q867", "uniprot_id": "A0A5G2Q867_PIG", "mass": { "chemical_mass": 12837.0, "monoisotopic_mass": 12837.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q867", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q867", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q867", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q867", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042730", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042730", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q867", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q867-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIVSDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q867-1|A0A5G2Q867_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q867-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q867-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIVSDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2Q867-1|A0A5G2Q867_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q867-1" }, "locus": { "chromosome": "15", "start_pos": 110684384, "end_pos": 110684049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071001.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071001.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060364.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060364.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q867", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q867" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q867-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q867-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q867" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8F3-1", "uniprot_ac": "A0A5G2Q8F3", "uniprot_id": "A0A5G2Q8F3_PIG", "mass": { "chemical_mass": 23816.0, "monoisotopic_mass": 23816.0 }, "refseq": { "ac": "XP_020932818", "name": "stAR-related lipid transfer protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932818" }, "gene_names": [ { "name": "STARD4", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ] }, { "name": "STARD4", "type": "synonym", "evidence": [ { "id": "XP_020932818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932818" } ] } ], "protein_names": [ { "name": "StAR related lipid transfer domain containing 4", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3/entry#names_and_taxonomy" } ] }, { "name": "stAR-related lipid transfer protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020932818", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932818" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STARD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3", "locus": { "chromosome": "2", "start_pos": 116236255, "end_pos": 116257041, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031518", "url": "https://www.ensembl.org/id/ENSSSCG00000031518" } ] } } ], "crossref": [ { "id": "A0A5G2Q8F3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8F3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031518", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031518", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100233203", "url": "https://www.ncbi.nlm.nih.gov/gene/100233203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TTQYEEG", "url": "https://omabrowser.org/oma/group/TTQYEEG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q8F3", "url": "https://www.orthodb.org/?gene=A0A5G2Q8F3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47006:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47006:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01852", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01852", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196108", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196108", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932818", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932818", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TZ65", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZ65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TZ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZ65-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGLPDAAVLATRLKNTLLQYHSIEDDKWRVAKKMKDVTIWRKPSEEFNGHLFKAQGVIDDVVNNVIDHIRPGPCRLDWDSLMTSMDILEHFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYEEGLLSCGISLDWSEKRSEFVRGYNHPCGWFCVPLKDNPNRSLLTGYIQTDLRGMIPQSAVDTAMASTLINFYGDLQKALQKT", "length": 208, "header": "tr|A0A5G2Q8F3-1|A0A5G2Q8F3_PIG Isoform 1 of StAR related lipid transfer domain containing 4 OS=Sus scrofa OX=9823 GN=STARD4 PE=4 SV=1 CANONICAL=A0A5G2Q8F3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TZ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZ65/entry", "sequence": { "sequence": "MEGLPDAAVLATRLKNTLLQYHSIEDDKWRVAKKMKDVTIWRKPSEEFNGHLIAV", "length": 55, "header": "tr|A0A4X1TZ65-1|A0A4X1TZ65_PIG Computationally mapped isoform of StAR related lipid transfer domain containing 4 OS=Sus scrofa OX=9823 GN=STARD4 PE=4 SV=1 CANONICAL=A0A5G2Q8F3-1" }, "locus": { "chromosome": "2", "start_pos": 116249862, "end_pos": 116242054, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074198.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074198.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060461.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060461.1" } ] } }, { "isoform_ac": "A0A5G2Q8F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3/entry", "sequence": { "sequence": "MEGLPDAAVLATRLKNTLLQYHSIEDDKWRVAKKMKDVTIWRKPSEEFNGHLFKAQGVIDDVVNNVIDHIRPGPCRLDWDSLMTSMDILEHFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYEEGLLSCGISLDWSEKRSEFVRGYNHPCGWFCVPLKDNPNRSLLTGYIQTDLRGMIPQSAVDTAMASTLINFYGDLQKALQKT", "length": 208, "header": "tr|A0A5G2Q8F3-1|A0A5G2Q8F3_PIG Isoform 1 of StAR related lipid transfer domain containing 4 OS=Sus scrofa OX=9823 GN=STARD4 PE=4 SV=1 CANONICAL=A0A5G2Q8F3-1" }, "locus": { "chromosome": "2", "start_pos": 116249862, "end_pos": 116240530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074639.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074639.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060485.1" } ] } }, { "isoform_ac": "A0A5G2RJY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJY0/entry", "sequence": { "sequence": "MEGLPDAAVLATRLKNTLLQYHSIEDDKWRVAKKMKDVTIWRKPSEEFNGHLFKAQGVIDDVVNNVIDHIRPGPCRLDWDSLMTSMDILEHFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYEEGLLSCGNLKTLYFLSVLFKYLTLLGWMFLSTQ", "length": 159, "header": "tr|A0A5G2RJY0-1|A0A5G2RJY0_PIG Computationally mapped isoform of StAR related lipid transfer domain containing 4 OS=Sus scrofa OX=9823 GN=STARD4 PE=4 SV=1 CANONICAL=A0A5G2Q8F3-1" }, "locus": { "chromosome": "2", "start_pos": 116249862, "end_pos": 116241866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080432.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080432.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072280.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-196108", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196108", "resource": "Reactome", "description": "Pregnenolone biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z9I9-1", "protein_name": "StAR-related lipid transfer protein 4", "gene_name": "Stard4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADPGSGWSQSSRKLKMEGLSDVASISTKLQNTLIQYHSIEEDQWRVAKKVKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDILEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPNQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKALRKA", "length": 224 }, "evidence": [ { "id": "A0A5G2Q8F3", "url": "https://omabrowser.org/oma/group/A0A5G2Q8F3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NKR7-1", "protein_name": "StAR related lipid transfer domain containing 4", "gene_name": "STARD4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLLPDPAPLATRLQNTLLRYHSIADSEWRIARKTKDAVVWRKPSEEFSGYLYKAQGVVEDITNRIVDHIRPGPYRLDWDSLMTTMDIVETFEENCCVMRYTTAGQLWNIIAPREFVDFSYTTSYEDGLLSCGVSLNYGEVRPNFVRGFNHPCGWFCVPLKDYPSHSLLTGYIQTELRGMLPQSAVDTAMASTLTNFYSDLKKALKS", "length": 207 }, "evidence": [ { "id": "A0A5G2Q8F3", "url": "https://omabrowser.org/oma/group/A0A5G2Q8F3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q96DR4-1", "protein_name": "StAR-related lipid transfer protein 4", "gene_name": "STARD4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGLSDVASFATKLKNTLIQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVIDDLVYSIIDHIRPGPCRLDWDSLMTSLDILENFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYKEGLLSCGISLDWDEKRPEFVRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDLRGMIPQSAVDTAMASTLTNFYGDLRKAL", "length": 205 }, "evidence": [ { "id": "A0A5G2Q8F3", "url": "https://omabrowser.org/oma/group/A0A5G2Q8F3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of bile acid biosynthetic process", "id": "GO:0070859", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070859", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "intracellular cholesterol transport", "id": "GO:0032367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032367", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "cholesterol import", "id": "GO:0070508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "positive regulation of cholesterol metabolic process", "id": "GO:0090205", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090205", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "cholesterol transport involved in cholesterol storage", "id": "GO:0010879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010879", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cholesterol binding", "id": "GO:0015485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015485", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" }, { "name": "cholesterol transfer activity", "id": "GO:0120020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8F3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 208, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8F3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8F3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8F3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8F3" }, { "id": "PS50848", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "START", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 208, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8I3-1", "uniprot_ac": "A0A5G2Q8I3", "uniprot_id": "A0A5G2Q8I3_PIG", "mass": { "chemical_mass": 33594.0, "monoisotopic_mass": 33594.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8I3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8I3", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2Q8I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQPNSKKTNQSMEKWAKDLNRLFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKRWYIYTMEYYSAIKKNDIMPCAATWMELENLILSEMSQKDKDKYHMISLITGI", "length": 283, "header": "tr|A0A5G2Q8I3-1|A0A5G2Q8I3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8I3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3/entry", "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQPNSKKTNQSMEKWAKDLNRLFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKRWYIYTMEYYSAIKKNDIMPCAATWMELENLILSEMSQKDKDKYHMISLITGI", "length": 283, "header": "tr|A0A5G2Q8I3-1|A0A5G2Q8I3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8I3-1" }, "locus": { "chromosome": "8", "start_pos": 100542924, "end_pos": 100542076, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088962.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088962.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060196.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060196.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8I3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8I3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 283, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8I3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8I3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8M2-1", "uniprot_ac": "A0A5G2Q8M2", "uniprot_id": "A0A5G2Q8M2_PIG", "mass": { "chemical_mass": 24180.0, "monoisotopic_mass": 24180.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8M2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8M2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048546", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048546", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKTLTKVGIEGTYLNIIKTIYDKPTANIILIREKLKVFPLKSGIRQQCPLSPLLFNIVLEVLATAIRQRKEIKGIQIGRDEIKLSLYADDMILYIENPKDSTQKLLELINKFSKVAGYKINIHKSVAFLYTNNEFLEKAYKNTIPFKTAPKKIKYLGIHQTTEAKDLYAENYKTLFKEIKEDVKNWKDTPCSWIGKNNIVKMAILPKAI", "length": 210, "header": "tr|A0A5G2Q8M2-1|A0A5G2Q8M2_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8M2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2/entry", "sequence": { "sequence": "MTKTLTKVGIEGTYLNIIKTIYDKPTANIILIREKLKVFPLKSGIRQQCPLSPLLFNIVLEVLATAIRQRKEIKGIQIGRDEIKLSLYADDMILYIENPKDSTQKLLELINKFSKVAGYKINIHKSVAFLYTNNEFLEKAYKNTIPFKTAPKKIKYLGIHQTTEAKDLYAENYKTLFKEIKEDVKNWKDTPCSWIGKNNIVKMAILPKAI", "length": 210, "header": "tr|A0A5G2Q8M2-1|A0A5G2Q8M2_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8M2-1" }, "locus": { "chromosome": "2", "start_pos": 51046892, "end_pos": 51046418, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083616.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083616.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060575.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8M2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 210, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8M2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8M2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8M2" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 161, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8P7-1", "uniprot_ac": "A0A5G2Q8P7", "uniprot_id": "A0A5G2Q8P7_PIG", "mass": { "chemical_mass": 44712.0, "monoisotopic_mass": 44712.0 }, "refseq": {}, "gene_names": [ { "name": "ADAP2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ] } ], "protein_names": [ { "name": "Arf-GAP with dual PH domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7/entry#names_and_taxonomy" } ] }, { "name": "Centaurin-alpha-2", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADAP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7", "locus": { "chromosome": "12", "start_pos": 42817669, "end_pos": 42849922, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017738", "url": "https://www.ensembl.org/id/ENSSSCG00000017738" } ] } } ], "crossref": [ { "id": "A0A5G2Q8P7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8P7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01251", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01251", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13252", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13252", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46021", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46021", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46021:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46021:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDRERNKKRLLELLQAAGTGNAHCADGAADPDWASYKLGIFICLNCSGVHRNFPDISKVKSVRLDFWDDSIVEIAVVLQFMTRNGNLRVKAKYEARVPAFYYVPQANDCLVLKEQWIRAKYERQEFMADGKIISPPGNREGFLWKRGRDNAQFLRRRFVLLAREGLLKYYTKEEGKDPKAVISIKDLNATFQTEKIGNPHGLQITYRREGHVRNLFVYHESGKEIVDWFNALRAARLQYLKMAFPELPESELVPLITRNYLKQGFMEKTGPKQREPFKKRWFALDPQERRLLYYKNPLDAFEQGQVFLGSSEQGYQVYEDLPKGVRGNRWKAGLTMVTPQRRFVFTCPSEKEQREWLESFRDVLSRPLTPLNLLPASTESGCSR", "length": 385, "header": "tr|A0A5G2Q8P7-1|A0A5G2Q8P7_PIG Isoform 1 of Arf-GAP with dual PH domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ADAP2 PE=4 SV=1 CANONICAL=A0A5G2Q8P7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7/entry", "sequence": { "sequence": "MGDRERNKKRLLELLQAAGTGNAHCADGAADPDWASYKLGIFICLNCSGVHRNFPDISKVKSVRLDFWDDSIVEIAVVLQFMTRNGNLRVKAKYEARVPAFYYVPQANDCLVLKEQWIRAKYERQEFMADGKIISPPGNREGFLWKRGRDNAQFLRRRFVLLAREGLLKYYTKEEGKDPKAVISIKDLNATFQTEKIGNPHGLQITYRREGHVRNLFVYHESGKEIVDWFNALRAARLQYLKMAFPELPESELVPLITRNYLKQGFMEKTGPKQREPFKKRWFALDPQERRLLYYKNPLDAFEQGQVFLGSSEQGYQVYEDLPKGVRGNRWKAGLTMVTPQRRFVFTCPSEKEQREWLESFRDVLSRPLTPLNLLPASTESGCSR", "length": 385, "header": "tr|A0A5G2Q8P7-1|A0A5G2Q8P7_PIG Isoform 1 of Arf-GAP with dual PH domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ADAP2 PE=4 SV=1 CANONICAL=A0A5G2Q8P7-1" }, "locus": { "chromosome": "12", "start_pos": 42849922, "end_pos": 42821075, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070609.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070609.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060266.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060266.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "phosphatidylinositol bisphosphate binding", "id": "GO:1902936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902936", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" }, { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,4,5-trisphosphate binding", "id": "GO:0005547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005547", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" }, { "name": "inositol 1,3,4,5 tetrakisphosphate binding", "id": "GO:0043533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043533", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8P7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 385, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8P7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8P7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" }, { "id": "PS50115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arf-GAP", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 141, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q8P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8P7" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 238, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8Q5-1", "uniprot_ac": "A0A5G2Q8Q5", "uniprot_id": "A0A5G2Q8Q5_PIG", "mass": { "chemical_mass": 17014.0, "monoisotopic_mass": 17014.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8Q5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Q5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048797", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048797", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q8Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPNTHKEQDFMLQSCYCLSTSSPLSANTKFFFCQSTLARARNRGPETEMHTPSTPTKDEVTFGHITRNMVFRTKVAGRLCSNLQCAQSHIISGHHNLGWRERKKLAMRSNQILSGFYHRHWMKYYQHFKDEKLRFNQIAHGPRVR", "length": 145, "header": "tr|A0A5G2Q8Q5-1|A0A5G2Q8Q5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Q5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5/entry", "sequence": { "sequence": "MPNTHKEQDFMLQSCYCLSTSSPLSANTKFFFCQSTLARARNRGPETEMHTPSTPTKDEVTFGHITRNMVFRTKVAGRLCSNLQCAQSHIISGHHNLGWRERKKLAMRSNQILSGFYHRHWMKYYQHFKDEKLRFNQIAHGPRVR", "length": 145, "header": "tr|A0A5G2Q8Q5-1|A0A5G2Q8Q5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Q5-1" }, "locus": { "chromosome": "16", "start_pos": 64581239, "end_pos": 64580805, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067808.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067808.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059632.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059632.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8Q5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 145, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8Q5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Q5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8Q7-1", "uniprot_ac": "A0A5G2Q8Q7", "uniprot_id": "A0A5G2Q8Q7_PIG", "mass": { "chemical_mass": 148833.0, "monoisotopic_mass": 148833.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8Q7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Q7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048970", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048970", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTIWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q8Q7-1|A0A5G2Q8Q7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Q7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTIWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q8Q7-1|A0A5G2Q8Q7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Q7-1" }, "locus": { "chromosome": "1", "start_pos": 73876398, "end_pos": 73872583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103400.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103400.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078755.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078755.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Q7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8Q7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8Q7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Q7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8S0-1", "uniprot_ac": "A0A5G2Q8S0", "uniprot_id": "A0A5G2Q8S0_PIG", "mass": { "chemical_mass": 53588.0, "monoisotopic_mass": 53588.0 }, "refseq": {}, "gene_names": [ { "name": "SAAL1", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ] } ], "protein_names": [ { "name": "Protein SAAL1", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0/entry#names_and_taxonomy" } ] }, { "name": "Protein saal1", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0/entry#names_and_taxonomy" } ] }, { "name": "Synoviocyte proliferation-associated in collagen-induced arthritis protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in promoting the proliferation of synovial fibroblasts in response to pro-inflammatory stimuli.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H1#function" }, { "database": "UniProtKB", "id": "ARBA00057763", "url": "https://www.uniprot.org/uniprotkb/ARBA00057763#function" }, { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0#function" }, { "database": "UniProtKB", "id": "A0A5G2QN47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN47#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAAL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0", "locus": { "chromosome": "2", "start_pos": 41056420, "end_pos": 41028693, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035393", "url": "https://www.ensembl.org/id/ENSSSCG00000035393" } ] } } ], "crossref": [ { "id": "A0A5G2Q8S0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8S0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035393", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035393", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100526207", "url": "https://www.ncbi.nlm.nih.gov/gene/100526207", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287A4H1", "url": "https://www.orthodb.org/?gene=A0A287A4H1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23424:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23424:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4H1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRNPSPPPLSGDEDKEEAAGGDCIGSTVYSKHWLFGVLSRLIQIVSPENTKSSSDDEEQQMELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSRCPRLREICVGILGNMACFQEICLSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQSEVASVWVERIREHPAIYDSMCFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWIRNGALQPLDQPQEDSEEQPVFRIVPCVLEAAKQVRSENPEGLDVYMHILQLLTTVDDGIQAIVQSPDTGKDTWNLLFDLVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQAEQEYLKIEKGKYNLPLIDSLIRVLQNMEHCQKKPENSAESNTEETKKSDLTQDDFHLKILKDISCEFLSNIFQVLTKETVAQGLKEGQLSKQKCSCAFENLLPFYSPVVEDFLKILHEVDKTLAGNLEESFPSLKVQT", "length": 475, "header": "tr|A0A5G2Q8S0-1|A0A5G2Q8S0_PIG Isoform 1 of Protein SAAL1 OS=Sus scrofa OX=9823 GN=SAAL1 PE=3 SV=1 CANONICAL=A0A5G2Q8S0-1" }, "isoforms": [ { "isoform_ac": "A0A287A4H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H1/entry", "sequence": { "sequence": "MDRNPSPPPLSGDEDKEEAAGGDCIGSTVYSKHWLFGVLSRLIQDVALFLQEFNAPDIFMGVLAKSRCPRLREICVGILGNMACFQEICLSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQSEVASVWVERIREHPAIYDSMCFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWIRNGALQPLDQPQEDSEEQPVFRIVPCVLEAAKQVRSENPEGLDVYMHILQLLTTVDDGIQAIVQSPDTGKDTWNLLFDLVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQAEQEYLKIEKVDLPLIDSLIRVLQNMEHCQKKPENSAESNTEETKKSDLTQDDFHLKILKDISCEFLSNIFQVLTKETVAQGLKEGQLSKQKCSCAFENLLPFYSPVVEDFLKILHEVDKTLAGNLEESFPSLKVQT", "length": 435, "header": "tr|A0A287A4H1-1|A0A287A4H1_PIG Computationally mapped isoform of Protein SAAL1 OS=Sus scrofa OX=9823 GN=SAAL1 PE=3 SV=2 CANONICAL=A0A5G2Q8S0-1" }, "locus": { "chromosome": "2", "start_pos": 41051692, "end_pos": 41028720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056869.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056869.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038673.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038673.2" } ] } }, { "isoform_ac": "A0A5G2Q8S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0/entry", "sequence": { "sequence": "MDRNPSPPPLSGDEDKEEAAGGDCIGSTVYSKHWLFGVLSRLIQIVSPENTKSSSDDEEQQMELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSRCPRLREICVGILGNMACFQEICLSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQSEVASVWVERIREHPAIYDSMCFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWIRNGALQPLDQPQEDSEEQPVFRIVPCVLEAAKQVRSENPEGLDVYMHILQLLTTVDDGIQAIVQSPDTGKDTWNLLFDLVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQAEQEYLKIEKGKYNLPLIDSLIRVLQNMEHCQKKPENSAESNTEETKKSDLTQDDFHLKILKDISCEFLSNIFQVLTKETVAQGLKEGQLSKQKCSCAFENLLPFYSPVVEDFLKILHEVDKTLAGNLEESFPSLKVQT", "length": 475, "header": "tr|A0A5G2Q8S0-1|A0A5G2Q8S0_PIG Isoform 1 of Protein SAAL1 OS=Sus scrofa OX=9823 GN=SAAL1 PE=3 SV=1 CANONICAL=A0A5G2Q8S0-1" }, "locus": { "chromosome": "2", "start_pos": 41051692, "end_pos": 41028720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083000.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083000.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059652.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059652.1" } ] } }, { "isoform_ac": "A0A5G2QN47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN47/entry", "sequence": { "sequence": "MDRNPSPPPLSGDEDKEEAAGGDCIGSTVYSKHWLFGVLSRLIQIVSPENTKSSSDDEEQQMELDEEMENEICRVWDMSMDEDVALFLQEFNAPDIFMGVLAKSRCPRLREICVGILGNMACFQEICLSISSDKNLGQVLLHCLYDSDPPTLLETSRLLLTCLSQSEVASVWVERIREHPAIYDSMCFIMSSSTNVDLLVKVGEVVDKLFDLDEKLMLEWIRNGALQPLDQPQEDSEEQPVFRIVPCVLEAAKQVRSENPEGLDVYMHILQLLTTVDDGIQAIVQSPDTGKDTWNLLFDLVCHEFCQSDDPPIILQEQKTVLASVFSVLSAIYASQAEQEYLKIEKVDLPLIDSLIRVLQNMEHCQKKPENSAESNTEETKKSDLTQDDFHLKILKDISCEFLSNIFQVLTKETVAQGLKEGQLSKQKCSCAFENLLPFYSPVVEDFLKILHEVDKTLAGNLEESFPSLKNIRRVGEDYLHASASAMPDP", "length": 490, "header": "tr|A0A5G2QN47-1|A0A5G2QN47_PIG Computationally mapped isoform of Protein SAAL1 OS=Sus scrofa OX=9823 GN=SAAL1 PE=3 SV=1 CANONICAL=A0A5G2Q8S0-1" }, "locus": { "chromosome": "2", "start_pos": 41052026, "end_pos": 41028720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078022.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078022.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059741.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059741.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of synoviocyte proliferation", "id": "GO:1901647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901647", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8S0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8S0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 475, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8S0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8S0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8S0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8S0" }, { "id": "PF28174", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAAL1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 445, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8T6-1", "uniprot_ac": "A0A5G2Q8T6", "uniprot_id": "A0A5G2Q8T6_PIG", "mass": { "chemical_mass": 148863.0, "monoisotopic_mass": 148863.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8T6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8T6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8T6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8T6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8T6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046730", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046730", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8T6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQFIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKCPSTDEWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q8T6-1|A0A5G2Q8T6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8T6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQFIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKCPSTDEWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2Q8T6-1|A0A5G2Q8T6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8T6-1" }, "locus": { "chromosome": "8", "start_pos": 59200349, "end_pos": 59196534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084435.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084435.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060661.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060661.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8T6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8T6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8T6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8T6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8T6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8T6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T6" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8U1-1", "uniprot_ac": "A0A5G2Q8U1", "uniprot_id": "A0A5G2Q8U1_PIG", "mass": { "chemical_mass": 15895.0, "monoisotopic_mass": 15895.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8U1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8U1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8U1", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2Q8U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRNATYFCVLILYLTTLLNSFMSSSSFLVASLGFSLYSIMFADNGSFTSSFPIWIPFISFSSLIAMAGISKTLLNETGESRHPCFLPNLRGNAFSFSSFSMMLAVGLSYIAFIMLRYVPSVPTFWNIFIIMDVEFSCGAVY", "length": 142, "header": "tr|A0A5G2Q8U1-1|A0A5G2Q8U1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8U1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1/entry", "sequence": { "sequence": "MYRNATYFCVLILYLTTLLNSFMSSSSFLVASLGFSLYSIMFADNGSFTSSFPIWIPFISFSSLIAMAGISKTLLNETGESRHPCFLPNLRGNAFSFSSFSMMLAVGLSYIAFIMLRYVPSVPTFWNIFIIMDVEFSCGAVY", "length": 142, "header": "tr|A0A5G2Q8U1-1|A0A5G2Q8U1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8U1-1" }, "locus": { "chromosome": "6", "start_pos": 44377530, "end_pos": 44377105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102991.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102991.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078586.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078586.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8U1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8U1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 142, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8U1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8U1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8W3-1", "uniprot_ac": "A0A5G2Q8W3", "uniprot_id": "A0A5G2Q8W3_PIG", "mass": { "chemical_mass": 24729.0, "monoisotopic_mass": 24729.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8W3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8W3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8W3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047940", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047940", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37335", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37335", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37335:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37335:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15318", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15318", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8W3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSQCDLPGTEPGHGALGQRAEQRQHGLVTSPAIGNNSSHQWTKVPKQACKERPPDMDKAQRQQQFFKHFKPCAGARVGEGSSIKAGRTKIMLLFSLDKRQQLAQARAGPGELTRRLDEDAAAAQVGAPKAPPTLRGAGDGAERCESARARETKLLVLLLLLLLLDARLQEVGRRAAGGARVGGGAKAAQGWPRLYARLLTENPADRDVDLVEEQPCKRRRCPRPRL", "length": 227, "header": "tr|A0A5G2Q8W3-1|A0A5G2Q8W3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8W3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3/entry", "sequence": { "sequence": "MRSQCDLPGTEPGHGALGQRAEQRQHGLVTSPAIGNNSSHQWTKVPKQACKERPPDMDKAQRQQQFFKHFKPCAGARVGEGSSIKAGRTKIMLLFSLDKRQQLAQARAGPGELTRRLDEDAAAAQVGAPKAPPTLRGAGDGAERCESARARETKLLVLLLLLLLLDARLQEVGRRAAGGARVGGGAKAAQGWPRLYARLLTENPADRDVDLVEEQPCKRRRCPRPRL", "length": 227, "header": "tr|A0A5G2Q8W3-1|A0A5G2Q8W3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8W3-1" }, "locus": { "chromosome": "17", "start_pos": 37166856, "end_pos": 37165508, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083427.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083427.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059707.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059707.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8W3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 227, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8W3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8W3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 }, { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8W9-1", "uniprot_ac": "A0A5G2Q8W9", "uniprot_id": "A0A5G2Q8W9_PIG", "mass": { "chemical_mass": 79603.0, "monoisotopic_mass": 79603.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000041438", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041438", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8W9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2Q8W9-1|A0A5G2Q8W9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8W9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9/entry", "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2Q8W9-1|A0A5G2Q8W9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8W9-1" }, "locus": { "chromosome": "12", "start_pos": 27757842, "end_pos": 27755806, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075884.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075884.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065610.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065610.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8W9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8W9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 179, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 472, "end_pos": 474 }, { "start_pos": 529, "end_pos": 531 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8Y2-1", "uniprot_ac": "A0A5G2Q8Y2", "uniprot_id": "A0A5G2Q8Y2_PIG", "mass": { "chemical_mass": 21698.0, "monoisotopic_mass": 21698.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q8Y2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050703", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050703", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHSLTPYTKRNSKWIKDLDIRPDTIKLLEENIGQTLSDINHSNIFSDPPLRGLTRKTKINKWDLIKLQSFYTEKETLNNTKRQPTEWEKIFANESTDKGFISKIYLLQLHIKKTNNPIQKWAEDLNRQFSKEDIQMAEKHMKRCSTSFIIREMQIKTTLRYHLTPARMAIIKKYTNNKC", "length": 182, "header": "tr|A0A5G2Q8Y2-1|A0A5G2Q8Y2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Y2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2/entry", "sequence": { "sequence": "MKLEHSLTPYTKRNSKWIKDLDIRPDTIKLLEENIGQTLSDINHSNIFSDPPLRGLTRKTKINKWDLIKLQSFYTEKETLNNTKRQPTEWEKIFANESTDKGFISKIYLLQLHIKKTNNPIQKWAEDLNRQFSKEDIQMAEKHMKRCSTSFIIREMQIKTTLRYHLTPARMAIIKKYTNNKC", "length": 182, "header": "tr|A0A5G2Q8Y2-1|A0A5G2Q8Y2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q8Y2-1" }, "locus": { "chromosome": "5", "start_pos": 84908984, "end_pos": 84908439, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089547.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089547.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060376.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060376.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8Y2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8Y2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 }, { "start_pos": 81, "end_pos": 83 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8Y6-1", "uniprot_ac": "A0A5G2Q8Y6", "uniprot_id": "A0A5G2Q8Y6_PIG", "mass": { "chemical_mass": 26608.0, "monoisotopic_mass": 26608.0 }, "refseq": { "ac": "XP_020933021", "name": "actin-like protein 10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933021" }, "gene_names": [ { "name": "ACTL10", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6" } ] }, { "name": "ACTL10", "type": "synonym", "evidence": [ { "id": "XP_020933021", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933021" } ] } ], "protein_names": [ { "name": "Actin like 10", "type": "synonym", "evidence": [ { "id": "A0A5G2Q8Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6/entry#names_and_taxonomy" } ] }, { "name": "actin-like protein 10", "type": "synonym", "evidence": [ { "id": "XP_020933021", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933021" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTL10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6", "locus": { "chromosome": "17", "start_pos": 37170643, "end_pos": 37169906, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000044750", "url": "https://www.ensembl.org/id/ENSSSCG00000044750" } ] } } ], "crossref": [ { "id": "A0A5G2Q8Y6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044750", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044750", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102164213", "url": "https://www.ncbi.nlm.nih.gov/gene/102164213", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102164213", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164213", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q8Y6", "url": "https://www.orthodb.org/?gene=A0A5G2Q8Y6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933021", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933021", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASTALLALCSVGAFSGLAVEAGAGVCHTTPIYAGHSWQKATFRLDVAGSTLSRYLRELLVAACPDQQLQALPRKVITQLKKRCCYVSLDFEGDLQNPARHHPASFCLGNGCSICLSSERFRCPEPIFQPSLLGQAEPGLPTLAFQALQRLPATLRTRLANTTVLAGGSTLFPGFTERLEMELGAQCQRHGYGALRPCLVARPGRGTAVWTGGSMVASFRSFQCRWITRAMYQECGSRLVHKVFN", "length": 245, "header": "tr|A0A5G2Q8Y6-1|A0A5G2Q8Y6_PIG Isoform 1 of Actin like 10 OS=Sus scrofa OX=9823 GN=ACTL10 PE=3 SV=1 CANONICAL=A0A5G2Q8Y6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6/entry", "sequence": { "sequence": "MASTALLALCSVGAFSGLAVEAGAGVCHTTPIYAGHSWQKATFRLDVAGSTLSRYLRELLVAACPDQQLQALPRKVITQLKKRCCYVSLDFEGDLQNPARHHPASFCLGNGCSICLSSERFRCPEPIFQPSLLGQAEPGLPTLAFQALQRLPATLRTRLANTTVLAGGSTLFPGFTERLEMELGAQCQRHGYGALRPCLVARPGRGTAVWTGGSMVASFRSFQCRWITRAMYQECGSRLVHKVFN", "length": 245, "header": "tr|A0A5G2Q8Y6-1|A0A5G2Q8Y6_PIG Isoform 1 of Actin like 10 OS=Sus scrofa OX=9823 GN=ACTL10 PE=3 SV=1 CANONICAL=A0A5G2Q8Y6-1" }, "locus": { "chromosome": "17", "start_pos": 37170640, "end_pos": 37169906, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072073.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072073.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060722.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102164213", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164213", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8Y6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 245, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8Y6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8Y9-1", "uniprot_ac": "A0A5G2Q8Y9", "uniprot_id": "A0A5G2Q8Y9_PIG", "mass": { "chemical_mass": 19536.0, "monoisotopic_mass": 19536.0 }, "refseq": { "ac": "XP_005659216", "name": "sterile alpha motif domain-containing protein 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659216" }, "gene_names": [ { "name": "SAMD5", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" } ] }, { "name": "SAMD5", "type": "synonym", "evidence": [ { "id": "XP_005659216", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659216" } ] } ], "protein_names": [ { "name": "Sterile alpha motif domain-containing protein 5", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9/entry#names_and_taxonomy" } ] }, { "name": "sterile alpha motif domain-containing protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005659216", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659216" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAMD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9", "locus": { "chromosome": "1", "start_pos": 18231494, "end_pos": 18290021, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000048240", "url": "https://www.ensembl.org/id/ENSSSCG00000048240" } ] } } ], "crossref": [ { "id": "A0A5G2Q8Y9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048240", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048240", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09527", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09527", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522528", "url": "https://www.ncbi.nlm.nih.gov/gene/100522528", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522528", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522528", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q8Y9", "url": "https://www.orthodb.org/?gene=A0A5G2Q8Y9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12301", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12301", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12301:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12301:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659216", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659216", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCTNIVYEWLKALQLPQYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVRRLREQDAAAAGLYFTLEPQPPPVPPGPPAVSVPTRRRGEPCSGPTQGPRGDPRSQTTAPRGRELVSYPKLKLKIMIRDKLVRDGIHLSKPPYSRKVPMAGILAYLMNWPKSSQNR", "length": 175, "header": "tr|A0A5G2Q8Y9-1|A0A5G2Q8Y9_PIG Isoform 1 of Sterile alpha motif domain-containing protein 5 OS=Sus scrofa OX=9823 GN=SAMD5 PE=4 SV=1 CANONICAL=A0A5G2Q8Y9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9/entry", "sequence": { "sequence": "MCTNIVYEWLKALQLPQYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVRRLREQDAAAAGLYFTLEPQPPPVPPGPPAVSVPTRRRGEPCSGPTQGPRGDPRSQTTAPRGRELVSYPKLKLKIMIRDKLVRDGIHLSKPPYSRKVPMAGILAYLMNWPKSSQNR", "length": 175, "header": "tr|A0A5G2Q8Y9-1|A0A5G2Q8Y9_PIG Isoform 1 of Sterile alpha motif domain-containing protein 5 OS=Sus scrofa OX=9823 GN=SAMD5 PE=4 SV=1 CANONICAL=A0A5G2Q8Y9-1" }, "locus": { "chromosome": "1", "start_pos": 18289758, "end_pos": 18236134, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076355.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076355.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059737.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059737.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 105, "start_aa": "Thr", "end_pos": 105, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr105", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522528", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522528", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8Y9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 175, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8Y9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8Y9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y9" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 65, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 105 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q922-1", "uniprot_ac": "A0A5G2Q922", "uniprot_id": "A0A5G2Q922_PIG", "mass": { "chemical_mass": 21231.0, "monoisotopic_mass": 21231.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q922", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q922", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q922", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q922", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044230", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044230", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q922", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q922-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLRFPSRYLPNFTNPNRPIPSNTLYIRYNNSLLISNTYLSRRKLWMNYSLPTCKWSINILHLPIHPCRPRPILRILCISRNMKHQSNSIIYCYSNSLHGLRPTLRTNIILRSYCHHKPTISYSLYWNKPCRMNLRRFLRRQSNPYTILRLPLHSALHHRCPRSCTSFIPTRNWIQ", "length": 176, "header": "tr|A0A5G2Q922-1|A0A5G2Q922_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q922-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q922-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922/entry", "sequence": { "sequence": "MKLRFPSRYLPNFTNPNRPIPSNTLYIRYNNSLLISNTYLSRRKLWMNYSLPTCKWSINILHLPIHPCRPRPILRILCISRNMKHQSNSIIYCYSNSLHGLRPTLRTNIILRSYCHHKPTISYSLYWNKPCRMNLRRFLRRQSNPYTILRLPLHSALHHRCPRSCTSFIPTRNWIQ", "length": 176, "header": "tr|A0A5G2Q922-1|A0A5G2Q922_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q922-1" }, "locus": { "chromosome": "2", "start_pos": 115573503, "end_pos": 115572976, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073592.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073592.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059782.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059782.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q922", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q922" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q922-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 176, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q922-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q922" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q947-1", "uniprot_ac": "A0A5G2Q947", "uniprot_id": "A0A5G2Q947_PIG", "mass": { "chemical_mass": 37929.0, "monoisotopic_mass": 37929.0 }, "refseq": {}, "gene_names": [ { "name": "BTBD19", "type": "recommended", "evidence": [ { "id": "A0A5G2Q947", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947" } ] } ], "protein_names": [ { "name": "BTB domain containing 19", "type": "synonym", "evidence": [ { "id": "A0A5G2Q947", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q947", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BTBD19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947", "locus": { "chromosome": "6", "start_pos": 166520244, "end_pos": 166526858, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003926", "url": "https://www.ensembl.org/id/ENSSSCG00000003926" } ] } } ], "crossref": [ { "id": "A0A5G2Q947", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q947", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003926", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003926", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18294", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18294", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18494", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18494", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46965", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46965", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46965:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46965:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q947", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q947-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S350", "url": "https://www.uniprot.org/uniprotkb/F1S350", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S350-1", "url": "https://www.uniprot.org/uniprotkb/F1S350-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPETTMPLSELTPPHLSPHSGKDRAATSQTNQTHRQQASWAAPPAYSSTPLPPPPMEPPGLVVHGAVAPFSTALRSLVNNPLYSDVRFVVGQERQEVFAHRCLLACRCNFFQRLLGSEMGPGVPSPVVLSTVPAEAFLAVLEFLYTNSAKLHHSVLEVLTAAVEYGLEELRELCLEFVVKVLDVELVCEALQVAVTFGLGSLQERCVAFIEAHSQEALRTRGFLELSAPALLPLLRSDKLCVDEAELVLAARSWARVGAAVLERPVAEVAAPVVRELRLALLAPAELSALEEQNRREPLIPVEQIVEAWKCHALRRGDAARGALCRRRRGTLPREHHRFLDPPFK", "length": 345, "header": "tr|A0A5G2Q947-1|A0A5G2Q947_PIG Isoform 1 of BTB domain containing 19 OS=Sus scrofa OX=9823 GN=BTBD19 PE=4 SV=2 CANONICAL=A0A5G2Q947-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q947-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947/entry", "sequence": { "sequence": "MPETTMPLSELTPPHLSPHSGKDRAATSQTNQTHRQQASWAAPPAYSSTPLPPPPMEPPGLVVHGAVAPFSTALRSLVNNPLYSDVRFVVGQERQEVFAHRCLLACRCNFFQRLLGSEMGPGVPSPVVLSTVPAEAFLAVLEFLYTNSAKLHHSVLEVLTAAVEYGLEELRELCLEFVVKVLDVELVCEALQVAVTFGLGSLQERCVAFIEAHSQEALRTRGFLELSAPALLPLLRSDKLCVDEAELVLAARSWARVGAAVLERPVAEVAAPVVRELRLALLAPAELSALEEQNRREPLIPVEQIVEAWKCHALRRGDAARGALCRRRRGTLPREHHRFLDPPFK", "length": 345, "header": "tr|A0A5G2Q947-1|A0A5G2Q947_PIG Isoform 1 of BTB domain containing 19 OS=Sus scrofa OX=9823 GN=BTBD19 PE=4 SV=2 CANONICAL=A0A5G2Q947-1" }, "locus": { "chromosome": "6", "start_pos": 166526692, "end_pos": 166521248, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074951.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074951.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059812.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059812.2" } ] } }, { "isoform_ac": "F1S350-1", "url": "https://www.uniprot.org/uniprotkb/F1S350/entry", "sequence": { "sequence": "MPETTMPLSELTPPHLSPHSGKDRAATSQTNQTHRQQASWAAPPAYSSTPLPPPPMEPPGLVVHGAVAPFSTALRSLVNNPLYSDVRFVVGQERQEVFAHRCLLACRCNFFQRLLGSEMGPGVPSPVVLSTVPAEAFLAVLEFLYTNSAKLHHSVAVTFGLGSLQERCVAFIEAHSQEALRTRGFLELSAPALLPLLRSDKLCVDEAELVLAARSWARVGAAVLERPVAEVAAPVVRELRLALLAPAELSALEEQNRREPLIPVEQIVEAWKCHALRRGDAARGALCRRRRGTLPREHHRFLDPPFK", "length": 307, "header": "tr|F1S350-1|F1S350_PIG Computationally mapped isoform of BTB domain containing 19 OS=Sus scrofa OX=9823 GN=BTBD19 PE=4 SV=4 CANONICAL=A0A5G2Q947-1" }, "locus": { "chromosome": "6", "start_pos": 166526692, "end_pos": 166521248, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004342.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004342.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004242.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004242.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q947", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q947-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 345, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q947-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q947" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q947", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q947" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 84, "end_pos": 153, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q952-1", "uniprot_ac": "A0A5G2Q952", "uniprot_id": "A0A5G2Q952_PIG", "mass": { "chemical_mass": 7990.0, "monoisotopic_mass": 7990.0 }, "refseq": {}, "gene_names": [ { "name": "MAPRE2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q952", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAPRE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952", "locus": { "chromosome": "6", "start_pos": 118987169, "end_pos": 118943422, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003738", "url": "https://www.ensembl.org/id/ENSSSCG00000003738" } ] } } ], "crossref": [ { "id": "A0A5G2Q952", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q952", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q952", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q952-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYRLCLKTGNQEDGEEKVCSCPGVCMQERWNPLD", "length": 71, "header": "tr|A0A5G2Q952-1|A0A5G2Q952_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MAPRE2 PE=4 SV=1 CANONICAL=A0A5G2Q952-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q952-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952/entry", "sequence": { "sequence": "MPGPTQTLSPNGENNNDIIQDNGTIIPFRKHTVRGERSYRLCLKTGNQEDGEEKVCSCPGVCMQERWNPLD", "length": 71, "header": "tr|A0A5G2Q952-1|A0A5G2Q952_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MAPRE2 PE=4 SV=1 CANONICAL=A0A5G2Q952-1" }, "locus": { "chromosome": "6", "start_pos": 118879698, "end_pos": 118879122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074114.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074114.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060802.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060802.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 5, "start_aa": "Thr", "end_pos": 5, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr5", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q952", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q952" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q952-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 71, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q952-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q952" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 5 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q963-1", "uniprot_ac": "A0A5G2Q963", "uniprot_id": "A0A5G2Q963_PIG", "mass": { "chemical_mass": 36907.0, "monoisotopic_mass": 36907.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110261043", "type": "recommended", "evidence": [ { "id": "A0A5G2Q963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ] } ], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110261043", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q963", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q963", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038043", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038043", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42757:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42757:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q963-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SGRPSPGVQGHLAASSCLPGLSALHSAGLLSQSLEFSSPADNYTVCEGDNATLSCFIDEHVTRVAWLNRSNILYAGNDRWTSDPRVRLLTNTPEEFSILITQVGLGDEGLYTCSFQTRRQPYTTQVYLIVHVPARIVNISSPVTVNEGNNVNLLCLAVGRPEPTVTWRQLRDGFTSEGEILEISDIQRGQAGEYECVTHNGVNSVPDSRRVLVTVNYPPTITDVTSARTALGRAALLRCEAMAVPPADFQWYKDDRLLSSGTAEGLKVQTERTRSMLLFANVSARHYGNYTCRAANRLGTSSASMRLLRPGSLENSAPRPPGPLTLLSALGWLWWRM", "length": 337, "header": "tr|A0A5G2Q963-1|A0A5G2Q963_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110261043 PE=3 SV=2 CANONICAL=A0A5G2Q963-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q963-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963/entry", "sequence": { "sequence": "SGRPSPGVQGHLAASSCLPGLSALHSAGLLSQSLEFSSPADNYTVCEGDNATLSCFIDEHVTRVAWLNRSNILYAGNDRWTSDPRVRLLTNTPEEFSILITQVGLGDEGLYTCSFQTRRQPYTTQVYLIVHVPARIVNISSPVTVNEGNNVNLLCLAVGRPEPTVTWRQLRDGFTSEGEILEISDIQRGQAGEYECVTHNGVNSVPDSRRVLVTVNYPPTITDVTSARTALGRAALLRCEAMAVPPADFQWYKDDRLLSSGTAEGLKVQTERTRSMLLFANVSARHYGNYTCRAANRLGTSSASMRLLRPGSLENSAPRPPGPLTLLSALGWLWWRM", "length": 337, "header": "tr|A0A5G2Q963-1|A0A5G2Q963_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110261043 PE=3 SV=2 CANONICAL=A0A5G2Q963-1" }, "locus": { "chromosome": "6", "start_pos": 58542761, "end_pos": 58535297, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070400.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070400.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060817.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060817.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cell adhesion molecule binding", "id": "GO:0050839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050839", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q963", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q963-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 337, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q963-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q963" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q963", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q963" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 123, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q968-1", "uniprot_ac": "A0A5G2Q968", "uniprot_id": "A0A5G2Q968_PIG", "mass": { "chemical_mass": 104317.0, "monoisotopic_mass": 104317.0 }, "refseq": {}, "gene_names": [ { "name": "NPAS3", "type": "recommended", "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ] } ], "protein_names": [ { "name": "Neuronal PAS domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968/entry#names_and_taxonomy" } ] }, { "name": "Basic-helix-loop-helix-PAS protein MOP6", "type": "synonym", "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968/entry#names_and_taxonomy" } ] }, { "name": "Member of PAS protein 6", "type": "synonym", "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a broad role in neurogenesis. May control regulatory pathways relevant to schizophrenia and to psychotic illness.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSW5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSW5#function" }, { "database": "UniProtKB", "id": "ARBA00059012", "url": "https://www.uniprot.org/uniprotkb/ARBA00059012#function" }, { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968#function" }, { "database": "UniProtKB", "id": "F1SHH0", "url": "https://www.uniprot.org/uniprotkb/F1SHH0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPAS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968", "locus": { "chromosome": "7", "start_pos": 65928075, "end_pos": 66800991, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001964", "url": "https://www.ensembl.org/id/ENSSSCG00000001964" } ] } } ], "crossref": [ { "id": "A0A5G2Q968", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q968", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001964", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001964", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00130", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00130", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19732", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19732", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23043:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23043:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BSW5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q968-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHH0", "url": "https://www.uniprot.org/uniprotkb/F1SHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGTAANGTPQNVQGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGGGGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEGGAQASSKHQKRKKRRKRQKGGSASRRRLSSTSSPGGLDTGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPPGGTGGGGLHVAIPDSVLTPPGADGTAAARGKTQFSSSAPAALAPVSDPLSPPLSASPRDKHPGGGSSGSGGGGGGGGGGGSGSSAPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED", "length": 973, "header": "tr|A0A5G2Q968-1|A0A5G2Q968_PIG Isoform 1 of Neuronal PAS domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NPAS3 PE=4 SV=2 CANONICAL=A0A5G2Q968-1" }, "isoforms": [ { "isoform_ac": "A0A287BSW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSW5/entry", "sequence": { "sequence": "MAPTKPSFQQDPSRRERITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGGGGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEGGAQASSKHQKRKKRRKRQKGGSASRRRLSSTSSPGGLDTGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPPGGTGGGGLHVAIPDSVLTPPGADGTAAARGKTQFSSSAPAALAPVSDPLSPPLSASPRDKHPGGGSSGSGGGGGGGGGGGSGSSAPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED", "length": 939, "header": "tr|A0A287BSW5-1|A0A287BSW5_PIG Computationally mapped isoform of Neuronal PAS domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NPAS3 PE=4 SV=2 CANONICAL=A0A5G2Q968-1" }, "locus": { "chromosome": "7", "start_pos": 66796385, "end_pos": 65928078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062817.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062817.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059543.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059543.2" } ] } }, { "isoform_ac": "A0A5G2Q968-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968/entry", "sequence": { "sequence": "MIRIFPDFSVQVTAAAAGGAAAGVPAGAGMGRAGTAANGTPQNVQGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGGGGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEGGAQASSKHQKRKKRRKRQKGGSASRRRLSSTSSPGGLDTGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPPGGTGGGGLHVAIPDSVLTPPGADGTAAARGKTQFSSSAPAALAPVSDPLSPPLSASPRDKHPGGGSSGSGGGGGGGGGGGSGSSAPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED", "length": 973, "header": "tr|A0A5G2Q968-1|A0A5G2Q968_PIG Isoform 1 of Neuronal PAS domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NPAS3 PE=4 SV=2 CANONICAL=A0A5G2Q968-1" }, "locus": { "chromosome": "7", "start_pos": 66800792, "end_pos": 65928078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083614.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083614.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060823.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060823.2" } ] } }, { "isoform_ac": "A0A5G2RDJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDJ6/entry", "sequence": { "sequence": "MRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVVCFPLAKSQLPLQ", "length": 154, "header": "tr|A0A5G2RDJ6-1|A0A5G2RDJ6_PIG Computationally mapped isoform of Neuronal PAS domain protein 3 OS=Sus scrofa OX=9823 GN=NPAS3 PE=4 SV=2 CANONICAL=A0A5G2Q968-1" }, "locus": { "chromosome": "7", "start_pos": 66530238, "end_pos": 66049280, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075964.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075964.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072469.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072469.2" } ] } }, { "isoform_ac": "F1SHH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHH0/entry", "sequence": { "sequence": "MAPTKPSFQQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGGGGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEGGAQASSKHQKRKKRRKRQKGGSASRRRLSSTSSPGGLDTGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPPGGTGGGGLHVAIPDSVLTPPGADGTAAARGKTQFSSSAPAALAPVSDPLSPPLSASPRDKHPGGGSSGSGGGGGGGGGGGSGSSAPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED", "length": 926, "header": "tr|F1SHH0-1|F1SHH0_PIG Computationally mapped isoform of Neuronal PAS domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NPAS3 PE=4 SV=4 CANONICAL=A0A5G2Q968-1" }, "locus": { "chromosome": "7", "start_pos": 66796385, "end_pos": 65928078, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002197.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002197.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002146.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002146.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q968", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 713, "end_pos": 715, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q968-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 973, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q968-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q968" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 87, "end_pos": 140, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q968", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q968" }, { "id": "PS50112", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50112" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PAS", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 251, "start_aa": "His", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 522, "end_pos": 524 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 697, "end_pos": 699 }, { "start_pos": 713, "end_pos": 715 }, { "start_pos": 920, "end_pos": 922 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9A9-1", "uniprot_ac": "A0A5G2Q9A9", "uniprot_id": "A0A5G2Q9A9_PIG", "mass": { "chemical_mass": 86363.0, "monoisotopic_mass": 86363.0 }, "refseq": { "ac": "XP_020952909", "name": "zinc finger protein 836-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952909" }, "gene_names": [ { "name": "LOC110261288", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ] }, { "name": "LOC110261288", "type": "synonym", "evidence": [ { "id": "XP_020952909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952909" } ] } ], "protein_names": [ { "name": "C2H2-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 836-like", "type": "synonym", "evidence": [ { "id": "XP_020952909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952909" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110261288", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000045482", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045482", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110261288", "url": "https://www.ncbi.nlm.nih.gov/gene/110261288", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261288", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261288", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q9A9", "url": "https://www.orthodb.org/?gene=A0A5G2Q9A9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952909", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952909", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLQRQERNKIKHFYLREIQGNTYDLESQQRDEERTDKGMAVTQHENLTAKRDRHGTSIAGISPAGSRFAVSFQDELHGFKSAEKILQADSSLRSRASFSPPQTVSPVIQANIPNTNGSDFPPPSILTQDHREHRESPPRYNRGSETFHQDLNLTEPPIILAGEKVHDRELCGKVFRLNSDLAVHPRNHTGEKAYKPPVRGQTLSPGSHNTGPLTSRIDENTYTCEVCKKAFRRKSYLAMHQRIHAAEKAYTCDVCGKKFHHSSNRRRHQRIHTGAKPYACDVCGKGFNRNSILALHRRIHTGEKPYKCNACGKVFSRKGTLASHQRIHTGEKPYRCTQCGKTFHHRSVLLRHQMIHKGLKLHKCDVCGNVYSRRSNLVIHHRTHTGEKPYTCHACGQVFSQKASLACHQAVHTGEEPYKCSECGKSFHHSSNLRKHQLLHNGGKEYKCEVCGKVFRQNAYLAKHQRLHSGETPYRCSDCGKVFRKKAILTLHQRTHTGEEDAYQCHECGKVFCQKGTLARHRLIHARATPCTCDACGKTFDQHATLARHQATHAGEKLHKCDICGRIYRRKSDLAIHQRNHTGEKPYQCHECGKTFNYRSKLSRHLLIHTEEKLYKCDVCGRVFSQNSYLARHQRIHTGEKPYECSACGKTFNDKSAFSRHLMIHTGAKPYKCDVCGSVFRRRSHLAGHQRIHTQERPYTCNVCGKVFTQNSHLRVHQRVHTGEKPYKCHECGKVFSQNPTLAKHQRIHTQKKP", "length": 755, "header": "tr|A0A5G2Q9A9-1|A0A5G2Q9A9_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110261288 PE=3 SV=1 CANONICAL=A0A5G2Q9A9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9/entry", "sequence": { "sequence": "MKLQRQERNKIKHFYLREIQGNTYDLESQQRDEERTDKGMAVTQHENLTAKRDRHGTSIAGISPAGSRFAVSFQDELHGFKSAEKILQADSSLRSRASFSPPQTVSPVIQANIPNTNGSDFPPPSILTQDHREHRESPPRYNRGSETFHQDLNLTEPPIILAGEKVHDRELCGKVFRLNSDLAVHPRNHTGEKAYKPPVRGQTLSPGSHNTGPLTSRIDENTYTCEVCKKAFRRKSYLAMHQRIHAAEKAYTCDVCGKKFHHSSNRRRHQRIHTGAKPYACDVCGKGFNRNSILALHRRIHTGEKPYKCNACGKVFSRKGTLASHQRIHTGEKPYRCTQCGKTFHHRSVLLRHQMIHKGLKLHKCDVCGNVYSRRSNLVIHHRTHTGEKPYTCHACGQVFSQKASLACHQAVHTGEEPYKCSECGKSFHHSSNLRKHQLLHNGGKEYKCEVCGKVFRQNAYLAKHQRLHSGETPYRCSDCGKVFRKKAILTLHQRTHTGEEDAYQCHECGKVFCQKGTLARHRLIHARATPCTCDACGKTFDQHATLARHQATHAGEKLHKCDICGRIYRRKSDLAIHQRNHTGEKPYQCHECGKTFNYRSKLSRHLLIHTEEKLYKCDVCGRVFSQNSYLARHQRIHTGEKPYECSACGKTFNDKSAFSRHLMIHTGAKPYKCDVCGSVFRRRSHLAGHQRIHTQERPYTCNVCGKVFTQNSHLRVHQRVHTGEKPYKCHECGKVFSQNPTLAKHQRIHTQKKP", "length": 755, "header": "tr|A0A5G2Q9A9-1|A0A5G2Q9A9_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110261288 PE=3 SV=1 CANONICAL=A0A5G2Q9A9-1" }, "locus": { "chromosome": "6", "start_pos": 57150714, "end_pos": 57148450, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074084.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074084.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062089.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062089.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261288", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261288", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 581, "end_pos": 583, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q9A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9A9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 194, "start_aa": "His", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 153, "end_pos": 155 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 581, "end_pos": 583 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9D2-1", "uniprot_ac": "A0A5G2Q9D2", "uniprot_id": "A0A5G2Q9D2_PIG", "mass": { "chemical_mass": 16284.0, "monoisotopic_mass": 16284.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9D2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9D2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9D2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043390", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043390", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9D2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSIFSFLRNLHTAFHSGGTNLQSHQQCTRVPFSPDPLQHLLFVDFVMMAILAGVRWYLIVVLNSISLIMSDAEHLFMCFLAICMSSLENCLFRSSAHFLMGLFVFLVLSCRGYFSILEINPLSVASFAKIFSHSVG", "length": 147, "header": "tr|A0A5G2Q9D2-1|A0A5G2Q9D2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9D2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2/entry", "sequence": { "sequence": "MPRSGIAGSNGSSIFSFLRNLHTAFHSGGTNLQSHQQCTRVPFSPDPLQHLLFVDFVMMAILAGVRWYLIVVLNSISLIMSDAEHLFMCFLAICMSSLENCLFRSSAHFLMGLFVFLVLSCRGYFSILEINPLSVASFAKIFSHSVG", "length": 147, "header": "tr|A0A5G2Q9D2-1|A0A5G2Q9D2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9D2-1" }, "locus": { "chromosome": "1", "start_pos": 114908115, "end_pos": 114907675, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080278.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080278.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060547.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060547.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9D2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9D2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9D2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9D2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9D2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9F1-1", "uniprot_ac": "A0A5G2Q9F1", "uniprot_id": "A0A5G2Q9F1_PIG", "mass": { "chemical_mass": 8903.0, "monoisotopic_mass": 8903.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9F1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9F1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLSKLTFSGKVLTEPQNGGNMAFLDMSLDDIIILRKIEDTSTEEIKDGAENHLKNNSVSRRRSNTRKHRRQRGEMQ", "length": 78, "header": "tr|A0A5G2Q9F1-1|A0A5G2Q9F1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9F1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1/entry", "sequence": { "sequence": "MASLSKLTFSGKVLTEPQNGGNMAFLDMSLDDIIILRKIEDTSTEEIKDGAENHLKNNSVSRRRSNTRKHRRQRGEMQ", "length": 78, "header": "tr|A0A5G2Q9F1-1|A0A5G2Q9F1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9F1-1" }, "locus": { "chromosome": "X", "start_pos": 94647180, "end_pos": 94631490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089763.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089763.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060924.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9F1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 78, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9F1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9F1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9H4-1", "uniprot_ac": "A0A5G2Q9H4", "uniprot_id": "A0A5G2Q9H4_PIG", "mass": { "chemical_mass": 14796.0, "monoisotopic_mass": 14796.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9H4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051715", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051715", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9H4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGIASLISFSALSVLVYRNAVDFCVLILYPATLPNSWMSSNSFLVASLGFSRYSIMSSANRDSFTSSFPIWIPFISFTSLIAVARASRTMLKSSGESRHSCLVPDLGGTSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2Q9H4-1|A0A5G2Q9H4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9H4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4/entry", "sequence": { "sequence": "MVNGIASLISFSALSVLVYRNAVDFCVLILYPATLPNSWMSSNSFLVASLGFSRYSIMSSANRDSFTSSFPIWIPFISFTSLIAVARASRTMLKSSGESRHSCLVPDLGGTSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2Q9H4-1|A0A5G2Q9H4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9H4-1" }, "locus": { "chromosome": "12", "start_pos": 45516057, "end_pos": 45514669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086003.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086003.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059958.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059958.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9H4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9H4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9H5-1", "uniprot_ac": "A0A5G2Q9H5", "uniprot_id": "A0A5G2Q9H5_PIG", "mass": { "chemical_mass": 70206.0, "monoisotopic_mass": 70206.0 }, "refseq": {}, "gene_names": [ { "name": "SLC22A14", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ] } ], "protein_names": [ { "name": "Solute carrier family 22 member 14", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC22A14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5", "locus": { "chromosome": "13", "start_pos": 23159598, "end_pos": 23149231, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011255", "url": "https://www.ensembl.org/id/ENSSSCG00000011255" } ] } } ], "crossref": [ { "id": "A0A5G2Q9H5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011255", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011255", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPU7", "url": "https://www.uniprot.org/uniprotkb/I3LPU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPU7-1", "url": "https://www.uniprot.org/uniprotkb/I3LPU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKENDFRAELKSQHHFRNSHRPETTESPPPRSLDLLLRRLRAIEAKQNDKFAKIVDAMGEFGTFQRRLVALTFIPSILSAFFMFADLFVFTPQKPYCNTSWILALDPSLSESEQLNLTLPRAPNGSFLTCLMYLPVDWDLETIIEFGLNHTDSCQDGWFYPEVKWRSLINEFDLVCGKEPNPEMVQTMFLAGFLIGPPFYPHRLGRYPAILLSLLELIIFGFGTAFVKSFHQYLFFRFLVSQAVVGYSTSSLSLITEWLVGMHRAHAIILEGCFFAVGVLYLTGLAYNLLHWRLLFLVGGTPAFLLISYIWILPESPRWLMTKGKLEEATQLLCYAAGVNKKTIPLSLLSKLPGKKVAKASILDFYSNKHLCQVALILCSIFRMKELGVDIHLTQVIPGIMEVPGRLCCIFLLERFKRKWSLMLTLFQGAFLCFLSLVLPSELKSLLVLIIVLGEFSLAASVTLLFLYTSELLPTVLRATGLGLMCLFWSTTILPILLCTISATMALSLCSKLPETQDQPLLDSLEHLPLLTRTGSGSQALGRESMSGTVHPSSLLEGLVTQGCSMSIAVSPALLDAVAYLCPAQPVPAPILPDSPDLAWARSSPVLILWCLLGLGGALADVLGSLPSQGF", "length": 632, "header": "tr|A0A5G2Q9H5-1|A0A5G2Q9H5_PIG Isoform 1 of Solute carrier family 22 member 14 OS=Sus scrofa OX=9823 GN=SLC22A14 PE=4 SV=1 CANONICAL=A0A5G2Q9H5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5/entry", "sequence": { "sequence": "MAKENDFRAELKSQHHFRNSHRPETTESPPPRSLDLLLRRLRAIEAKQNDKFAKIVDAMGEFGTFQRRLVALTFIPSILSAFFMFADLFVFTPQKPYCNTSWILALDPSLSESEQLNLTLPRAPNGSFLTCLMYLPVDWDLETIIEFGLNHTDSCQDGWFYPEVKWRSLINEFDLVCGKEPNPEMVQTMFLAGFLIGPPFYPHRLGRYPAILLSLLELIIFGFGTAFVKSFHQYLFFRFLVSQAVVGYSTSSLSLITEWLVGMHRAHAIILEGCFFAVGVLYLTGLAYNLLHWRLLFLVGGTPAFLLISYIWILPESPRWLMTKGKLEEATQLLCYAAGVNKKTIPLSLLSKLPGKKVAKASILDFYSNKHLCQVALILCSIFRMKELGVDIHLTQVIPGIMEVPGRLCCIFLLERFKRKWSLMLTLFQGAFLCFLSLVLPSELKSLLVLIIVLGEFSLAASVTLLFLYTSELLPTVLRATGLGLMCLFWSTTILPILLCTISATMALSLCSKLPETQDQPLLDSLEHLPLLTRTGSGSQALGRESMSGTVHPSSLLEGLVTQGCSMSIAVSPALLDAVAYLCPAQPVPAPILPDSPDLAWARSSPVLILWCLLGLGGALADVLGSLPSQGF", "length": 632, "header": "tr|A0A5G2Q9H5-1|A0A5G2Q9H5_PIG Isoform 1 of Solute carrier family 22 member 14 OS=Sus scrofa OX=9823 GN=SLC22A14 PE=4 SV=1 CANONICAL=A0A5G2Q9H5-1" }, "locus": { "chromosome": "13", "start_pos": 23159386, "end_pos": 23149231, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086071.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086071.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060954.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060954.1" } ] } }, { "isoform_ac": "I3LPU7-1", "url": "https://www.uniprot.org/uniprotkb/I3LPU7/entry", "sequence": { "sequence": "MAKENDFRAELKSQHHFRNSHRPETTESPPPRSLDLLLRRLRAIEAKQNDKFAKIVDAMGEFGTFQRRLVALTFIPSILSAFFMFADLFVFTPQKPYCNTSWILALDPSLSESEQLNLTLPRAPNGSFLTCLMYLPVDWDLETIIEFGLNHTDSCQDGWFYPEVKWRSLINEVCPQTSRVAQPPFYPHRLGRYPAILLSLLELIIFGFGTAFVKSFHQYLFFRFLVSQAVVGYSTSSLSLITEWLVGMHRAHAIILEGCFFAVGVLYLTGLAYNLLHWRLLFLVGGTPAFLLISYIWILPESPRWLMTKGKLEEATQLLCYAAGVNKKTIPLSLLSKLPGKKVAKASILDFYSNKHLCQVALILCSMFALGCSYYMLSFRMKELGVDIHLTQVIPGIMEVPGRLCCIFLLERFKRKWSLMLTLFQGAFLCFLSLVLPSGRAPTPQPSELKSLLVLIIVLGEFSLAASVTLLFLYTSELLPTGDGFGANVSVLGAGGILSLMLVSQSTTILPILLCTISATMALSLCSKLPETQDQPLLDSLEHLPLLTRDLQMKKTQS", "length": 558, "header": "tr|I3LPU7-1|I3LPU7_PIG Computationally mapped isoform of Solute carrier family 22 member 14 OS=Sus scrofa OX=9823 GN=SLC22A14 PE=4 SV=3 CANONICAL=A0A5G2Q9H5-1" }, "locus": { "chromosome": "13", "start_pos": 23159595, "end_pos": 23149231, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032421.3", "url": "https://www.ensembl.org/id/ENSSSCT00000032421.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026124.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026124.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 302, "start_aa": "Thr", "end_pos": 302, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr302", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "riboflavin transmembrane transporter activity", "id": "GO:0032217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032217", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "pmid": "" }, { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9H5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 632, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9H5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 302 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 125, "end_pos": 127 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9H8-1", "uniprot_ac": "A0A5G2Q9H8", "uniprot_id": "A0A5G2Q9H8_PIG", "mass": { "chemical_mass": 13866.0, "monoisotopic_mass": 13866.0 }, "refseq": {}, "gene_names": [ { "name": "MYCBP", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ] } ], "protein_names": [ { "name": "MYC binding protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYCBP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8", "locus": { "chromosome": "6", "start_pos": 94805640, "end_pos": 94814337, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000051819", "url": "https://www.ensembl.org/id/ENSSSCG00000051819" } ] } } ], "crossref": [ { "id": "A0A5G2Q9H8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003648", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003648", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21937", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21937", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR026060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13168", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13168", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13168:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13168:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5W0", "url": "https://www.uniprot.org/uniprotkb/F2Z5W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5W0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSAAPSPPATVSGASYAAAAVTMAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKVLGNLQPKDENIGL", "length": 126, "header": "tr|A0A5G2Q9H8-1|A0A5G2Q9H8_PIG Isoform 1 of MYC binding protein OS=Sus scrofa OX=9823 GN=MYCBP PE=1 SV=2 CANONICAL=A0A5G2Q9H8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8/entry", "sequence": { "sequence": "MSSAAPSPPATVSGASYAAAAVTMAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKVLGNLQPKDENIGL", "length": 126, "header": "tr|A0A5G2Q9H8-1|A0A5G2Q9H8_PIG Isoform 1 of MYC binding protein OS=Sus scrofa OX=9823 GN=MYCBP PE=1 SV=2 CANONICAL=A0A5G2Q9H8-1" }, "locus": { "chromosome": "6", "start_pos": 94814334, "end_pos": 94809181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090565.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090565.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060959.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060959.2" } ] } }, { "isoform_ac": "A0A5G2QZQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ5/entry", "sequence": { "sequence": "MSSAAPSPPATVSGASYAAAAVTMAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKYKAPAL", "length": 118, "header": "tr|A0A5G2QZQ5-1|A0A5G2QZQ5_PIG Computationally mapped isoform of MYC binding protein OS=Sus scrofa OX=9823 GN=MYCBP PE=1 SV=1 CANONICAL=A0A5G2Q9H8-1" }, "locus": { "chromosome": "6", "start_pos": 94814334, "end_pos": 94809111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070898.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070898.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070378.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070378.1" } ] } }, { "isoform_ac": "F2Z5W0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W0/entry", "sequence": { "sequence": "MSSAAPSPPATVSGASYAAAAVTMAHYKAADSKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKTKLAQYEPPQEEKRAE", "length": 126, "header": "tr|F2Z5W0-1|F2Z5W0_PIG Computationally mapped isoform of MYC binding protein OS=Sus scrofa OX=9823 GN=MYCBP PE=1 SV=4 CANONICAL=A0A5G2Q9H8-1" }, "locus": { "chromosome": "6", "start_pos": 94814334, "end_pos": 94807862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004045.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004045.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003954.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003954.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9H8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9H8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9H8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 126, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9H8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9H8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9I3-1", "uniprot_ac": "A0A5G2Q9I3", "uniprot_id": "A0A5G2Q9I3_PIG", "mass": { "chemical_mass": 25461.0, "monoisotopic_mass": 25461.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9I3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9I3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9I3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047991", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047991", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q9I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDLNIMNIFSGQSPKAWEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKTVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTSCTAGGNVNWYSHYGEQFGDTLEIYP", "length": 219, "header": "tr|A0A5G2Q9I3-1|A0A5G2Q9I3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9I3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDLNIMNIFSGQSPKAWEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKTVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTSCTAGGNVNWYSHYGEQFGDTLEIYP", "length": 219, "header": "tr|A0A5G2Q9I3-1|A0A5G2Q9I3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9I3-1" }, "locus": { "chromosome": "13", "start_pos": 162542969, "end_pos": 162542313, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064453.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064453.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9I3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 219, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9I3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9I3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 177, "end_pos": 179 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9I8-1", "uniprot_ac": "A0A5G2Q9I8", "uniprot_id": "A0A5G2Q9I8_PIG", "mass": { "chemical_mass": 19887.0, "monoisotopic_mass": 19887.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9I8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9I8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050777", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050777", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDRLVEITDVEWNEEKRIKRIEDSLKELWDNFKHTNIHIIGVPEGEERDKGPEKISEETIAENFPNMGMESFTQIQEAQQIPYRINPRRNTPRHILIKLTNIKGKEQILKASREKQQITYKGSPVRLSADFSTETLQARREWHDIFKVTKGKKPATKNTLPSKTFFQI", "length": 169, "header": "tr|A0A5G2Q9I8-1|A0A5G2Q9I8_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2Q9I8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8/entry", "sequence": { "sequence": "MEDRLVEITDVEWNEEKRIKRIEDSLKELWDNFKHTNIHIIGVPEGEERDKGPEKISEETIAENFPNMGMESFTQIQEAQQIPYRINPRRNTPRHILIKLTNIKGKEQILKASREKQQITYKGSPVRLSADFSTETLQARREWHDIFKVTKGKKPATKNTLPSKTFFQI", "length": 169, "header": "tr|A0A5G2Q9I8-1|A0A5G2Q9I8_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2Q9I8-1" }, "locus": { "chromosome": "11", "start_pos": 48424905, "end_pos": 48424399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096280.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096280.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081324.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081324.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9I8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9I8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9I8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9I8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q9I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I8" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 131, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9J3-1", "uniprot_ac": "A0A5G2Q9J3", "uniprot_id": "A0A5G2Q9J3_PIG", "mass": { "chemical_mass": 17171.0, "monoisotopic_mass": 17171.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9J3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9J3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044626", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044626", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPLASCTCRFKKNGSLGRFTPRYFILLDVMVNGIASLISFSAPSLLVYRNAVNFCVLILYPATSPNSRMSSNSFLVESLGFSRYSVMSSANRDSFTSSFPMWIPFISFTSLVAVARTSKTMLRSSGESGHPCLVPELSGEFFQLFTVENDVCFH", "length": 155, "header": "tr|A0A5G2Q9J3-1|A0A5G2Q9J3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9J3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3/entry", "sequence": { "sequence": "MLPLASCTCRFKKNGSLGRFTPRYFILLDVMVNGIASLISFSAPSLLVYRNAVNFCVLILYPATSPNSRMSSNSFLVESLGFSRYSVMSSANRDSFTSSFPMWIPFISFTSLVAVARTSKTMLRSSGESGHPCLVPELSGEFFQLFTVENDVCFH", "length": 155, "header": "tr|A0A5G2Q9J3-1|A0A5G2Q9J3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9J3-1" }, "locus": { "chromosome": "10", "start_pos": 45157353, "end_pos": 45156889, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084395.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084395.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060618.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060618.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9J3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9J3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9J3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 155, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9J3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9J3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9L0-1", "uniprot_ac": "A0A5G2Q9L0", "uniprot_id": "A0A5G2Q9L0_PIG", "mass": { "chemical_mass": 150476.0, "monoisotopic_mass": 150476.0 }, "refseq": {}, "gene_names": [ { "name": "ADNP2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ] } ], "protein_names": [ { "name": "ADNP homeobox 2", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADNP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0", "locus": { "chromosome": "6", "start_pos": 128113288, "end_pos": 128030715, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038632", "url": "https://www.ensembl.org/id/ENSSSCG00000038632" } ] } } ], "crossref": [ { "id": "A0A5G2Q9L0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9L0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038632", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038632", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15740", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15740", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15740:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15740:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26748", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26748", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0N044", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N044", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0N044-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N044-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWATLRGLGVPHARLLGGAQGLHTSPVSYGKNLLKKFASKTKKKFWYEGPSLGSHLTYKPSQLEFLTKSTSKTTRKEDHVRLRALNGLLHKALTDMLCTPEVSQEICDLNVELSKVSLTTDFSACRVFWRATLSEAQNAHTEAVLQRSAAHMRHLLMSQQTLRSMPPIVFVQDKKHAAAVEVDQLLAIADFGPVDEKDMVPVGTASSRDASLIPGLAQKISKMFQIPVENLDNIRKVRKKVKSILVDIGLDSCKELLKDLKSFDPGEKYFYNTSWGDISLWEPSGKKVRYRTKPYCCSLCKYSTKVITSFKNHLHRYHEDEIDQELVIPCPNCVFSSQPKVVGRHFRMFHAPVRKVQNYTVNILGETKSSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFHYLINSYFGLRTEEVGEQSKADDTLSAEKMPPSDRYYCKKCNANASSQDALMYHILTSDIHRDLENKLRSVISEHIKKTGLLKQMHIAPKPAAHVAVPPNSSAPGMPAASPCFHLALPQSSQSQTVVQPVQGPAPPGTVASGASGSLTHSPPAVAQSHVTLVSSPLPVGQSNLTLPPSTPQPVFLSHGVPLNQTANPPVLPLSQPVGPINKSVGTSVLPINQSIRPGVLPLNQPVGPISRPVGPGVLSVNRPVGAGILPVNPSVTPGVLQAVSPGVISVSRTVPSGVLPAGQMTPAGVIPSGQTATSGVLPAGQMVQSGVLPIGQTAPSGVLPTGLAVPPRGLPPGQTVPLRVLPAGQVVPPGLLPPNQTVSSGVLPVNQGINSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQSVNTNILPANQTVRPGASQNTTFLTSGSILRQLIPTGKQVNGIPTYTLAPVSVTLPVPPGGVATVAPPQMPIQLLPSATAAQMASSMANMPSTPVVVNATQNMFVQASSSVADSNQVLKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSESKSAEKLEPEKLAACAPFLKWMREKTVRCLSCKCFVSEEELIHHLLMHGLGCLFCPCTFHDIKGLSEHSRTMHLGKKKLPVDYSNKGFQLDIDANGNLLFPHLDFITILPKEELGEREVYLAVLAGIHSKSLVPVYIKVRPQTEGASGRPGKQVMTCPFCFGTFVTTEAYELHLKERHHITPTVHTILKSPAFKCIHCCGVYTGNMTLAAIAIHLLRCRSAPKDSSSDLKVQPSFIENSELLLVNGEVIHDSGFSVKRKLPDGHFGAEDQRDGEERPLIINADADPTPEKVTSVVPFKRQRNESRTEGPLVNDDALQILALNPKKYEDRSYEEKKQFLRDYFHKRPYPSKKEIELLSSLLWVWKIDVASFFGKRRYICMKAIKNHKPSVLLGFDMSELKNVKHRLNFEYEPQNL", "length": 1379, "header": "tr|A0A5G2Q9L0-1|A0A5G2Q9L0_PIG Isoform 1 of ADNP homeobox 2 OS=Sus scrofa OX=9823 GN=ADNP2 PE=4 SV=2 CANONICAL=A0A5G2Q9L0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0/entry", "sequence": { "sequence": "MWATLRGLGVPHARLLGGAQGLHTSPVSYGKNLLKKFASKTKKKFWYEGPSLGSHLTYKPSQLEFLTKSTSKTTRKEDHVRLRALNGLLHKALTDMLCTPEVSQEICDLNVELSKVSLTTDFSACRVFWRATLSEAQNAHTEAVLQRSAAHMRHLLMSQQTLRSMPPIVFVQDKKHAAAVEVDQLLAIADFGPVDEKDMVPVGTASSRDASLIPGLAQKISKMFQIPVENLDNIRKVRKKVKSILVDIGLDSCKELLKDLKSFDPGEKYFYNTSWGDISLWEPSGKKVRYRTKPYCCSLCKYSTKVITSFKNHLHRYHEDEIDQELVIPCPNCVFSSQPKVVGRHFRMFHAPVRKVQNYTVNILGETKSSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFHYLINSYFGLRTEEVGEQSKADDTLSAEKMPPSDRYYCKKCNANASSQDALMYHILTSDIHRDLENKLRSVISEHIKKTGLLKQMHIAPKPAAHVAVPPNSSAPGMPAASPCFHLALPQSSQSQTVVQPVQGPAPPGTVASGASGSLTHSPPAVAQSHVTLVSSPLPVGQSNLTLPPSTPQPVFLSHGVPLNQTANPPVLPLSQPVGPINKSVGTSVLPINQSIRPGVLPLNQPVGPISRPVGPGVLSVNRPVGAGILPVNPSVTPGVLQAVSPGVISVSRTVPSGVLPAGQMTPAGVIPSGQTATSGVLPAGQMVQSGVLPIGQTAPSGVLPTGLAVPPRGLPPGQTVPLRVLPAGQVVPPGLLPPNQTVSSGVLPVNQGINSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQSVNTNILPANQTVRPGASQNTTFLTSGSILRQLIPTGKQVNGIPTYTLAPVSVTLPVPPGGVATVAPPQMPIQLLPSATAAQMASSMANMPSTPVVVNATQNMFVQASSSVADSNQVLKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSESKSAEKLEPEKLAACAPFLKWMREKTVRCLSCKCFVSEEELIHHLLMHGLGCLFCPCTFHDIKGLSEHSRTMHLGKKKLPVDYSNKGFQLDIDANGNLLFPHLDFITILPKEELGEREVYLAVLAGIHSKSLVPVYIKVRPQTEGASGRPGKQVMTCPFCFGTFVTTEAYELHLKERHHITPTVHTILKSPAFKCIHCCGVYTGNMTLAAIAIHLLRCRSAPKDSSSDLKVQPSFIENSELLLVNGEVIHDSGFSVKRKLPDGHFGAEDQRDGEERPLIINADADPTPEKVTSVVPFKRQRNESRTEGPLVNDDALQILALNPKKYEDRSYEEKKQFLRDYFHKRPYPSKKEIELLSSLLWVWKIDVASFFGKRRYICMKAIKNHKPSVLLGFDMSELKNVKHRLNFEYEPQNL", "length": 1379, "header": "tr|A0A5G2Q9L0-1|A0A5G2Q9L0_PIG Isoform 1 of ADNP homeobox 2 OS=Sus scrofa OX=9823 GN=ADNP2 PE=4 SV=2 CANONICAL=A0A5G2Q9L0-1" }, "locus": { "chromosome": "6", "start_pos": 128111838, "end_pos": 128030754, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068751.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068751.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060999.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060999.2" } ] } }, { "isoform_ac": "A0A8D0N044-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N044/entry", "sequence": { "sequence": "MILALKKFSPVGKTGVPLVAQQKFMEDASLIPGLAQKISKMFQIPVENLDNIRKVRKKVKSILVDIGLDSCKELLKDLKSFDPGEKYFYNTSWGDISLWEPSGKKVRYRTKPYCCSLCKYSTKVITSFKNHLHRYHEDEIDQELVIPCPNCVFSSQPKVVGRHFRMFHAPVRKVQNYTVNILGETKSSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFHYLINSYFGLRTEEVGEQSKADDTLSAEKMPPSDRYYCKKCNANASSQDALMYHILTSDIHRDLENKLRSVISEHIKKTGLLKQMHIAPKPAAHVAVPPNSSAPGMPAASPCFHLALPQSSQSQTVVQPVQGPAPPGTVASGASGSLTHSPPAVAQSHVTLVSSPLPVGQSNLTLPPSTPQPVFLSHGVPLNQTANPPVLPLSQPVGPINKSVGTSVLPINQSIRPGVLPLNQPVGPISRPVGPGVLSVNRPVGAGILPVNPSVTPGVLQAVSPGVISVSRTVPSGVLPAGQMTPAGVIPSGQTATSGVLPAGQMVQSGVLPIGQTAPSGVLPTGLAVPPRGLPPGQTVPLRVLPAGQVVPPGLLPPNQTVSSGVLPVNQGINSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQSVNTNILPANQTVRPGASQNTTFLTSGSILRQLIPTGKQVNGIPTYTLAPVSVTLPVPPGGVATVAPPQMPIQLLPSATAAQMASSMANMPSTPVVVNATQNMFVQASSSVADSNQVLKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSESKSAEKLEPEKLAACAPFLKWMREKTVRCLSCKCFVSEEELIHHLLMHGLGCLFCPCTFHDIKGLSEHSRTMHLGKKKLPVDYSNKGFQLDIDANGNLLFPHLDFITILPKEELGEREVYLAVLAGIHSKSLVPVYIKVRPQTEGASGRPGKQVMTCPFCFGTFVTTEAYELHLKERHHITPTVHTILKSPAFKCIHCCGVYTGNMTLAAIAIHLLRCRSAPKDSSSDLKVQPSFIENSELLLVNGEVIHDSGFSVKRKLPDGHFGAEDQRDGEERPLIINADADPTPEKVTSVVPFKRQRNESRTEGPLVNDDALQILALNPKKYEDRSYEEKKQFLRDYFHKRPYPSKKEIELLSSLLWVWKIDVASFFGKRRYICMKAIKNHKPSVLLGFDMSELKNVKHRLNFEYEPQNL", "length": 1197, "header": "tr|A0A8D0N044-1|A0A8D0N044_PIG Computationally mapped isoform of ADNP homeobox 2 OS=Sus scrofa OX=9823 GN=ADNP2 PE=4 SV=1 CANONICAL=A0A5G2Q9L0-1" }, "locus": { "chromosome": "6", "start_pos": 128111838, "end_pos": 128079953, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083287.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083287.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061855.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061855.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1252, "start_aa": "Thr", "end_pos": 1252, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1252", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 666, "start_aa": "Thr", "end_pos": 666, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr666", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" }, { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1170, "end_pos": 1172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1267, "end_pos": 1269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 573, "end_pos": 575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" }, { "start_pos": 769, "end_pos": 771, "annotation": "n_glycosylation_sequon" }, { "start_pos": 813, "end_pos": 815, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" }, { "start_pos": 834, "end_pos": 836, "annotation": "n_glycosylation_sequon" }, { "start_pos": 912, "end_pos": 914, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9L0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1379, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9L0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9L0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q9L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9L0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 1015, "end_pos": 1043, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 666, 1252 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1170, "end_pos": 1172 }, { "start_pos": 1267, "end_pos": 1269 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 573, "end_pos": 575 }, { "start_pos": 593, "end_pos": 595 }, { "start_pos": 611, "end_pos": 613 }, { "start_pos": 622, "end_pos": 624 }, { "start_pos": 769, "end_pos": 771 }, { "start_pos": 813, "end_pos": 815 }, { "start_pos": 824, "end_pos": 826 }, { "start_pos": 834, "end_pos": 836 }, { "start_pos": 912, "end_pos": 914 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9S2-1", "uniprot_ac": "A0A5G2Q9S2", "uniprot_id": "A0A5G2Q9S2_PIG", "mass": { "chemical_mass": 12440.0, "monoisotopic_mass": 12440.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9S2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9S2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043622", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043622", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLHTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVELLMMAILTGVRWYLKVVLIFISLIISDVEHFFMCLLAICMILFLSHLWIWCP", "length": 107, "header": "tr|A0A5G2Q9S2-1|A0A5G2Q9S2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9S2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLHTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVELLMMAILTGVRWYLKVVLIFISLIISDVEHFFMCLLAICMILFLSHLWIWCP", "length": 107, "header": "tr|A0A5G2Q9S2-1|A0A5G2Q9S2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9S2-1" }, "locus": { "chromosome": "12", "start_pos": 38792464, "end_pos": 38792144, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074718.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074718.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060073.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060073.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9S2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9S2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9S2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9S2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9U5-1", "uniprot_ac": "A0A5G2Q9U5", "uniprot_id": "A0A5G2Q9U5_PIG", "mass": { "chemical_mass": 16509.0, "monoisotopic_mass": 16509.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9U5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000051327", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051327", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9U5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSIFSFLRYLHTVFHSGFTNLHSHQGCRRVPFSPHPLQHLLFVDLLMMAILTGVRWYLMVVSISISLIIGDVEHFFKCLLAICVSSLEKCLFRSFAHFSIGLLAFLLLHCISCLHILEIKPLSVALFKTIFSHSVS", "length": 147, "header": "tr|A0A5G2Q9U5-1|A0A5G2Q9U5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9U5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5/entry", "sequence": { "sequence": "MPKSGIAGSYGSSIFSFLRYLHTVFHSGFTNLHSHQGCRRVPFSPHPLQHLLFVDLLMMAILTGVRWYLMVVSISISLIIGDVEHFFKCLLAICVSSLEKCLFRSFAHFSIGLLAFLLLHCISCLHILEIKPLSVALFKTIFSHSVS", "length": 147, "header": "tr|A0A5G2Q9U5-1|A0A5G2Q9U5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9U5-1" }, "locus": { "chromosome": "8", "start_pos": 48101118, "end_pos": 48100678, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083077.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083077.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060744.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060744.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9U5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9U5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCG4-1", "uniprot_ac": "A0A5G2QCG4", "uniprot_id": "A0A5G2QCG4_PIG", "mass": { "chemical_mass": 101993.0, "monoisotopic_mass": 101993.0 }, "refseq": {}, "gene_names": [ { "name": "GRM8", "type": "recommended", "evidence": [ { "id": "A0A5G2QCG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ] } ], "protein_names": [ { "name": "Glutamate metabotropic receptor 8", "type": "synonym", "evidence": [ { "id": "A0A5G2QCG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRM8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4", "locus": { "chromosome": "18", "start_pos": 21758568, "end_pos": 20951003, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022865", "url": "https://www.ensembl.org/id/ENSSSCG00000022865" } ] } } ], "crossref": [ { "id": "A0A5G2QCG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022865", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022865", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06376", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15286", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15286", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15454", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15454", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524120", "url": "https://www.ncbi.nlm.nih.gov/gene/100524120", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524120", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3LLU5", "url": "https://www.orthodb.org/?gene=I3LLU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24060", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24060", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-420499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q9V8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9V8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLU5", "url": "https://www.uniprot.org/uniprotkb/I3LLU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLU5-1", "url": "https://www.uniprot.org/uniprotkb/I3LLU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVCEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRVDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLCPRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQITNKSTEYKIIGHWTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNINRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLMGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISIQLLGVCVWFVVDPPHIIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNSKSSHADQISYTNKQYVI", "length": 910, "header": "tr|A0A5G2QCG4-1|A0A5G2QCG4_PIG Isoform 1 of Glutamate metabotropic receptor 8 OS=Sus scrofa OX=9823 GN=GRM8 PE=1 SV=2 CANONICAL=A0A5G2QCG4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9V8/entry", "sequence": { "sequence": "MVCEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRVDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLCPRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQITNKSTEYKIIGHWTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNINRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLMGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISIQLLGVCVWFVVDPPHIIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKFTYSLSRSFSVRCVCIYVYIYIYIYIYIYIYVKITLL", "length": 847, "header": "tr|A0A5G2Q9V8-1|A0A5G2QCG4_PIG Computationally mapped isoform of Glutamate metabotropic receptor 8 OS=Sus scrofa OX=9823 GN=GRM8 PE=1 SV=1 CANONICAL=A0A5G2QCG4-1" }, "locus": { "chromosome": "18", "start_pos": 21649003, "end_pos": 20961046, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068562.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068562.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060118.1" } ] } }, { "isoform_ac": "A0A5G2QCG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4/entry", "sequence": { "sequence": "MVCEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRVDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLCPRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQITNKSTEYKIIGHWTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNINRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLMGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISIQLLGVCVWFVVDPPHIIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNSKSSHADQISYTNKQYVI", "length": 910, "header": "tr|A0A5G2QCG4-1|A0A5G2QCG4_PIG Isoform 1 of Glutamate metabotropic receptor 8 OS=Sus scrofa OX=9823 GN=GRM8 PE=1 SV=2 CANONICAL=A0A5G2QCG4-1" }, "locus": { "chromosome": "18", "start_pos": 21743345, "end_pos": 20961046, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071693.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071693.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061795.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061795.2" } ] } }, { "isoform_ac": "I3LLU5-1", "url": "https://www.uniprot.org/uniprotkb/I3LLU5/entry", "sequence": { "sequence": "MVCEGKRSASCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRVDGDIILGGLFPVHAKGERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIMFANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLCPRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQITNKSTEYKIIGHWTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQRPNINRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLMGIFLCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISIQLLGVCVWFVVDPPHIIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYIIIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNTSSTKTTYISYSNHSI", "length": 908, "header": "tr|I3LLU5-1|I3LLU5_PIG Computationally mapped isoform of Glutamate metabotropic receptor 8 OS=Sus scrofa OX=9823 GN=GRM8 PE=1 SV=3 CANONICAL=A0A5G2QCG4-1" }, "locus": { "chromosome": "18", "start_pos": 21756428, "end_pos": 20961046, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026245.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026245.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025065.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025065.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9V8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9V8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524120", "resource": "KEGG Pathway" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-420499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "resource": "Reactome", "description": "Class C/3 (Metabotropic glutamate/pheromone receptors)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "pmid": "" }, { "name": "group III metabotropic glutamate receptor activity", "id": "GO:0001642", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001642", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of synaptic transmission, glutamatergic", "id": "GO:0051966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051966", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "pmid": "" }, { "name": "G protein-coupled glutamate receptor signaling pathway", "id": "GO:0007216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007216", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" }, { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCG4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 910, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCG4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCG4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCG4" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 583, "end_pos": 857, "start_aa": "Trp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 298, "end_pos": 300 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 565, "end_pos": 567 }, { "start_pos": 609, "end_pos": 611 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9W0-1", "uniprot_ac": "A0A5G2Q9W0", "uniprot_id": "A0A5G2Q9W0_PIG", "mass": { "chemical_mass": 38166.0, "monoisotopic_mass": 38166.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9W0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9W0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9W0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051533", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051533", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24232:SF91", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24232:SF91", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGLRDVKHFQPCTRCSRQAPGEDLHQGKSEMNSSVEDLGVGSCSPWDDPARFIVVPAAYALALALGLPANVAALAVFVRSGRRLGQALRLYLLNLALADVLFTLTLPLWLTYYLGPAHWPFPEAACRAAGAAYYVSTYAAVAFAALISVCRCGSVRRPGPRATARSALRRRGPARAACAAAWLAGLACAAPSLAAPHALRPGPGGSARCLERGWARAGLAYATVAFFAAAFLLVLAAYVSLARALAAPSGPGPAPTGPHRRAARTMVLGLLLVFALCLAPYHLLLAPWVAGQEGAAGPDGGGCRAASTLDVLHTLSLALLSLNSCLDPLIYCFSVRRFRQDCWALSCLPGVGVPGAHAASLSSSAS", "length": 367, "header": "tr|A0A5G2Q9W0-1|A0A5G2Q9W0_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q9W0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0/entry", "sequence": { "sequence": "MEGLRDVKHFQPCTRCSRQAPGEDLHQGKSEMNSSVEDLGVGSCSPWDDPARFIVVPAAYALALALGLPANVAALAVFVRSGRRLGQALRLYLLNLALADVLFTLTLPLWLTYYLGPAHWPFPEAACRAAGAAYYVSTYAAVAFAALISVCRCGSVRRPGPRATARSALRRRGPARAACAAAWLAGLACAAPSLAAPHALRPGPGGSARCLERGWARAGLAYATVAFFAAAFLLVLAAYVSLARALAAPSGPGPAPTGPHRRAARTMVLGLLLVFALCLAPYHLLLAPWVAGQEGAAGPDGGGCRAASTLDVLHTLSLALLSLNSCLDPLIYCFSVRRFRQDCWALSCLPGVGVPGAHAASLSSSAS", "length": 367, "header": "tr|A0A5G2Q9W0-1|A0A5G2Q9W0_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2Q9W0-1" }, "locus": { "chromosome": "6", "start_pos": 91231447, "end_pos": 91229811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090521.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090521.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060123.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 257, "start_aa": "Thr", "end_pos": 257, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9W0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 367, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9W0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9W0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q9W0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 332, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 257 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9X1-1", "uniprot_ac": "A0A5G2Q9X1", "uniprot_id": "A0A5G2Q9X1_PIG", "mass": { "chemical_mass": 18461.0, "monoisotopic_mass": 18461.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9X1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9X1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9X1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9X1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042739", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042739", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2Q9X1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKPKRQLTEWERIVSNDATDKGLISRIYRQLIQPNSKKANQSMEKWAKDPNRHFSKEDIQMANKHMKKCSNIVFLIWSLILILSNGVWTIFELHEKNNVAYRIFLIICLLFMVCVHSGFFF", "length": 157, "header": "tr|A0A5G2Q9X1-1|A0A5G2Q9X1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9X1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1/entry", "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKPKRQLTEWERIVSNDATDKGLISRIYRQLIQPNSKKANQSMEKWAKDPNRHFSKEDIQMANKHMKKCSNIVFLIWSLILILSNGVWTIFELHEKNNVAYRIFLIICLLFMVCVHSGFFF", "length": 157, "header": "tr|A0A5G2Q9X1-1|A0A5G2Q9X1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9X1-1" }, "locus": { "chromosome": "7", "start_pos": 89577478, "end_pos": 89577008, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067200.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067200.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060769.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060769.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9X1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9X1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9X1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 157, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9X1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9X1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9Z5-1", "uniprot_ac": "A0A5G2Q9Z5", "uniprot_id": "A0A5G2Q9Z5_PIG", "mass": { "chemical_mass": 12900.0, "monoisotopic_mass": 12900.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9Z5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5", "locus": {} } ], "crossref": [ { "id": "A0A5G2Q9Z5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9Z5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR037587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13323", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13323", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCGRAASQGFDQVLSQASAGRAQSTLLLNNEGSLLNHSTYRDVDARSPWPLPGTPGQPVAGTGNQVFNEHNLKFIFIDCLEGRAQALVQYPQEPLIQIAAPSKKRDDHLEGQGLLGKTS", "length": 120, "header": "tr|A0A5G2Q9Z5-1|A0A5G2Q9Z5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9Z5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5/entry", "sequence": { "sequence": "MSCGRAASQGFDQVLSQASAGRAQSTLLLNNEGSLLNHSTYRDVDARSPWPLPGTPGQPVAGTGNQVFNEHNLKFIFIDCLEGRAQALVQYPQEPLIQIAAPSKKRDDHLEGQGLLGKTS", "length": 120, "header": "tr|A0A5G2Q9Z5-1|A0A5G2Q9Z5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2Q9Z5-1" }, "locus": { "chromosome": "2", "start_pos": 11330814, "end_pos": 11330103, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085658.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085658.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060168.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060168.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 55, "start_aa": "Thr", "end_pos": 55, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr55", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of TOR signaling", "id": "GO:0032008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "pmid": "" }, { "name": "cellular response to amino acid stimulus", "id": "GO:0071230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071230", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Ragulator complex", "id": "GO:0071986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071986", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Z5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9Z5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9Z5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9Z5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 55 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QA45-1", "uniprot_ac": "A0A5G2QA45", "uniprot_id": "A0A5G2QA45_PIG", "mass": { "chemical_mass": 62166.0, "monoisotopic_mass": 62166.0 }, "refseq": {}, "gene_names": [ { "name": "DEPDC1B", "type": "recommended", "evidence": [ { "id": "A0A5G2QA45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ] } ], "protein_names": [ { "name": "DEP domain-containing protein 1B", "type": "recommended", "evidence": [ { "id": "A0A5G2QA45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DEPDC1B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45", "locus": { "chromosome": "16", "start_pos": 39466497, "end_pos": 39557840, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000057381", "url": "https://www.ensembl.org/id/ENSSSCG00000057381" } ] } } ], "crossref": [ { "id": "A0A5G2QA45", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA45", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04405", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04405", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04447", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04447", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16206:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16206:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013406", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013409", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013420", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BD92", "url": "https://www.uniprot.org/uniprotkb/A0A287BD92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BD92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BD92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKW0", "url": "https://www.uniprot.org/uniprotkb/F1SKW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAMEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQKDVIKFPEWNDPLPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSMTLSYLQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDDLLAARLVTFLMDNYQDILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKSKAKPQLLMWALKNPFQPFQRTRSFRM", "length": 532, "header": "tr|A0A5G2QA45-1|A0A5G2QA45_PIG Isoform 1 of DEP domain-containing protein 1B OS=Sus scrofa OX=9823 GN=DEPDC1B PE=4 SV=2 CANONICAL=A0A5G2QA45-1" }, "isoforms": [ { "isoform_ac": "A0A287BD92-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BD92/entry", "sequence": { "sequence": "MRAMEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQKDVIKFPEWNDPLPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSMTLSYLQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKSKAKPQLLMWALKNPFQPFQRTRSFRM", "length": 473, "header": "tr|A0A287BD92-1|A0A287BD92_PIG Computationally mapped isoform of DEP domain containing 1B OS=Sus scrofa OX=9823 GN=DEPDC1B PE=4 SV=1 CANONICAL=A0A5G2QA45-1" }, "locus": { "chromosome": "16", "start_pos": 39557787, "end_pos": 39467319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041441.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041441.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054294.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054294.1" } ] } }, { "isoform_ac": "A0A5G2QA45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45/entry", "sequence": { "sequence": "MRAMEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQKDVIKFPEWNDPLPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSMTLSYLQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDDLLAARLVTFLMDNYQDILKVPLALQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVITDAKLSSKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKSKAKPQLLMWALKNPFQPFQRTRSFRM", "length": 532, "header": "tr|A0A5G2QA45-1|A0A5G2QA45_PIG Isoform 1 of DEP domain-containing protein 1B OS=Sus scrofa OX=9823 GN=DEPDC1B PE=4 SV=2 CANONICAL=A0A5G2QA45-1" }, "locus": { "chromosome": "16", "start_pos": 39557787, "end_pos": 39467319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090246.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090246.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060855.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060855.2" } ] } }, { "isoform_ac": "F1SKW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKW0/entry", "sequence": { "sequence": "MEHRIVGPGPYRATKLWNETVELFRARMPLRKHRCRFKSYEHCFTGAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKRPPYQKDVIKFPEWNDPLPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSMTLSYLQKVLGLDSLEEVLDIKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGNLKEPLLTFHLFDAFVSVLGLLQKEKMAIEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDDLLAARLVTFLMDNYQDILKVPLALQTSIEERVAHLRRVQFQKSYPEVYQERFPTPESEALLFPEKSKAKPQLLMWALKNPFQPFQRTRSFRM", "length": 467, "header": "tr|F1SKW0-1|F1SKW0_PIG Computationally mapped isoform of DEP domain-containing protein 1B OS=Sus scrofa OX=9823 GN=DEPDC1B PE=4 SV=4 CANONICAL=A0A5G2QA45-1" }, "locus": { "chromosome": "16", "start_pos": 39557778, "end_pos": 39467319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018439.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018439.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017940.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017940.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" }, { "id": "R-SSC-9013409", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "resource": "Reactome", "description": "RHOJ GTPase cycle" }, { "id": "R-SSC-9013420", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "resource": "Reactome", "description": "RHOU GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" }, { "id": "R-SSC-9013424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "pmid": "" }, { "name": "positive regulation of Wnt signaling pathway", "id": "GO:0030177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030177", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QA45-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 532, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QA45-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA45" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QA45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" }, { "id": "PS50186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEP", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 111, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QA45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA45" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 396, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 21, "end_pos": 23 }, { "start_pos": 258, "end_pos": 260 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QA61-1", "uniprot_ac": "A0A5G2QA61", "uniprot_id": "A0A5G2QA61_PIG", "mass": { "chemical_mass": 44855.0, "monoisotopic_mass": 44855.0 }, "refseq": { "ac": "XP_020936537", "name": "heat shock transcription factor, Y-linked-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936537" }, "gene_names": [ { "name": "LOC110257871", "type": "synonym", "evidence": [ { "id": "XP_020936537", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936537" } ] } ], "protein_names": [ { "name": "HSF-type DNA-binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QA61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61/entry#names_and_taxonomy" } ] }, { "name": "heat shock transcription factor, Y-linked-like", "type": "synonym", "evidence": [ { "id": "XP_020936537", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936537" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61", "locus": {} } ], "crossref": [ { "id": "A0A5G2QA61", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA61", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046447", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046447", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257871", "url": "https://www.ncbi.nlm.nih.gov/gene/110257871", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257871", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257871", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPRILWK", "url": "https://omabrowser.org/oma/group/FPRILWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QA61", "url": "https://www.orthodb.org/?gene=A0A5G2QA61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015:SF336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015:SF336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936537", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936537", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHAPTEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHLISNFPSGYFGLRVEPSPLPTRYQNISPTACPVSNPQAAAHPWFPMPMATDTSAASLSRPNPQSFSISEHHPNYH", "length": 402, "header": "tr|A0A5G2QA61-1|A0A5G2QA61_PIG Isoform 1 of HSF-type DNA-binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QA61-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QA61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61/entry", "sequence": { "sequence": "MAHAPTEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHLISNFPSGYFGLRVEPSPLPTRYQNISPTACPVSNPQAAAHPWFPMPMATDTSAASLSRPNPQSFSISEHHPNYH", "length": 402, "header": "tr|A0A5G2QA61-1|A0A5G2QA61_PIG Isoform 1 of HSF-type DNA-binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QA61-1" }, "locus": { "chromosome": "Y", "start_pos": 22140292, "end_pos": 22138664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068405.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068405.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063679.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063679.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "ssc:110257871", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257871", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QA61-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 402, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QA61-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA61" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QA61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA61" }, { "id": "SM00415", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00415" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HSF-type DNA-binding", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 194, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 352, "end_pos": 354 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QA77-1", "uniprot_ac": "A0A5G2QA77", "uniprot_id": "A0A5G2QA77_PIG", "mass": { "chemical_mass": 22619.0, "monoisotopic_mass": 22619.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QA77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77", "locus": {} } ], "crossref": [ { "id": "A0A5G2QA77", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA77", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042357", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042357", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QA77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRMHVSLSRKDLSRYMPKSGIAGSYGSSMYSFLRYLHTVFHGGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLVMAILTGVRWYLVVVLICLSLVIRDVEHFFMCLLAICISSLEKCLFRSFAHFSIWLLAFLLLSCISCLYILEIKPLSIASFETIFSHSVSCLFVFFLVSFARQKLVSSIRSYWFIFALISVDLGD", "length": 197, "header": "tr|A0A5G2QA77-1|A0A5G2QA77_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QA77-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77/entry", "sequence": { "sequence": "MRMHVSLSRKDLSRYMPKSGIAGSYGSSMYSFLRYLHTVFHGGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLVMAILTGVRWYLVVVLICLSLVIRDVEHFFMCLLAICISSLEKCLFRSFAHFSIWLLAFLLLSCISCLYILEIKPLSIASFETIFSHSVSCLFVFFLVSFARQKLVSSIRSYWFIFALISVDLGD", "length": 197, "header": "tr|A0A5G2QA77-1|A0A5G2QA77_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QA77-1" }, "locus": { "chromosome": "11", "start_pos": 11044915, "end_pos": 11044625, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087911.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087911.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060268.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060268.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QA77-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 197, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QA77-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QA77" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAB8-1", "uniprot_ac": "A0A5G2QAB8", "uniprot_id": "A0A5G2QAB8_PIG", "mass": { "chemical_mass": 22811.0, "monoisotopic_mass": 22811.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QAB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAB8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAB8", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVEQKREKRLKRNEESLRELWDNVKRTNIRIIGVPEGEEREKGTEKIFQEIIAKNVPHMGKEPLTQIQEAQQVLYKINPRRNTPRHIIIKLTRTKDKEKILKAAREKKQVTYKGTPIKLSADFSAETLKARREWHDTLNSDERKNLQPRLLYPARLSFRFEGKIKSFTDKQKLREFSNTKPALQQILKELL", "length": 192, "header": "tr|A0A5G2QAB8-1|A0A5G2QAB8_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QAB8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8/entry", "sequence": { "sequence": "MDVEQKREKRLKRNEESLRELWDNVKRTNIRIIGVPEGEEREKGTEKIFQEIIAKNVPHMGKEPLTQIQEAQQVLYKINPRRNTPRHIIIKLTRTKDKEKILKAAREKKQVTYKGTPIKLSADFSAETLKARREWHDTLNSDERKNLQPRLLYPARLSFRFEGKIKSFTDKQKLREFSNTKPALQQILKELL", "length": 192, "header": "tr|A0A5G2QAB8-1|A0A5G2QAB8_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QAB8-1" }, "locus": { "chromosome": "14", "start_pos": 82920918, "end_pos": 82920343, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066458.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066458.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060318.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060318.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAB8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 192, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAB8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAB8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QAB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 123, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QAB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 190, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QAB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAB8" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 23, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAH7-1", "uniprot_ac": "A0A5G2QAH7", "uniprot_id": "A0A5G2QAH7_PIG", "mass": { "chemical_mass": 290371.0, "monoisotopic_mass": 290371.0 }, "refseq": { "ac": "XP_020954809", "name": "ral GTPase-activating protein subunit alpha-1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954809" }, "gene_names": [ { "name": "RALGAPA1", "type": "recommended", "evidence": [ { "id": "A0A5G2QAH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ] }, { "name": "RALGAPA1", "type": "synonym", "evidence": [ { "id": "XP_020954809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954809" } ] } ], "protein_names": [ { "name": "Ral GTPase activating protein catalytic subunit alpha 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QAH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7/entry#names_and_taxonomy" } ] }, { "name": "ral GTPase-activating protein subunit alpha-1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020954809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954809" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RALGAPA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7", "locus": { "chromosome": "7", "start_pos": 64372694, "end_pos": 64141014, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032377", "url": "https://www.ensembl.org/id/ENSSSCG00000032377" } ] } } ], "crossref": [ { "id": "ENSSSCG00000032377", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032377", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155163", "url": "https://www.ncbi.nlm.nih.gov/gene/100155163", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10063", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10063", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10063:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10063:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013407", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954809", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954809", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLJ5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFE1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVF0", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ96", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TCF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TCF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF40-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKM7", "url": "https://www.uniprot.org/uniprotkb/I3LKM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKM7-1", "url": "https://www.uniprot.org/uniprotkb/I3LKM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVAMRSRSIGECALPSAYIRSAKSAPVLIHTSKPFLPDIVLTPLSDELSDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTEASSISRSTESHITDTHSRESSLEVGDSIYDHLCHLIDPVELADSAFEQIQYIDLEGDDDLLSSLKEYFKENQESHSKNELGKDTASQEVSIAVNRDERSSLDNLEYIDQESKSENTTCFVGTPESIQFQKEPNSAVFMSDSASNQLDSFMRTKTEKCKQLNSDHQSSEPSSGSPCDKEKRKHLYRQTATELDACVDITLAEKVKAVQINENITVPHVMHAKKTTLKAPVNRRMPHVTSTSKLSPTKRSLSETVTHRAKIMKIATKKRNSVHVTFRPSTESVQFYNPLENKEAPWKMRLRKLSGFTSSSSSSTGTSNSHTSSDSVTELVKPGVYRPLDTISTASVSSKTIKESTEIPTATSQKEGIASNQLGSRSTPRSSSHEAGLQQGSLGGVYKTVVHALSKPKANVSPQRQNRMPPEAPLRDLYSHVMGYFGRKAAVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2590, "header": "tr|A0A5G2QAH7-1|A0A5G2QAH7_PIG Isoform 1 of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=2 CANONICAL=A0A5G2QAH7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLJ5/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTEASSISRSTESHITDTHSRESSLEVGDSIYDHLCHLIDPVELADSAFEQIQYIDLEGDDDLLSSLKEYFKENQESHSKNELGKDTASQEVSIAVNRDERSSLDNLEYIDQESKSENTTCFVGTPESIQFQKEPNSAVFMSDSASNQLDSFMRTKTEKCKQLNSDHQSSEPSSGSPCDKEKRKHLYRQTATELDACVDITLAEKVKAVQINENITVPHVMHAKKTTLKAPVNRRMPHVTSTSKLSPTKRSLSETVTHRAKIMKIATKKRNSVHVTFRPSTESVQFYNPLENKEAPWKMRLRKLSGFTSSSSSSTGTSNSHTSSDSVTELVKPGVYRPLDTISTASVSSKTIKESTEIPTATSQKEGIASNQLGSRSTPRSSSHEAGLQQGSLGGVYKTVVHALSKPKANVSPQRQNRMPPEAPLRDLYSHVMGYFGRKAAVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2543, "header": "tr|A0A286ZLJ5-1|A0A286ZLJ5_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=3 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64371503, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053217.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053217.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032488.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032488.3" } ] } }, { "isoform_ac": "A0A287AFE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFE1/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVAMRSRSIGECALPSAYIRSAKSAPVLIHTSKPFLPDIVLTPLSDELSDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTETMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH", "length": 2021, "header": "tr|A0A287AFE1-1|A0A287AFE1_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=2 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64363630, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065480.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065480.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042607.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042607.2" } ] } }, { "isoform_ac": "A0A287AVF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF0/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVAMRSRSIGECALPSAYIRSAKSAPVLIHTSKPFLPDIVLTPLSDELSDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAVGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2132, "header": "tr|A0A287AVF0-1|A0A287AVF0_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=2 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64371503, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062114.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062114.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048093.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048093.2" } ] } }, { "isoform_ac": "A0A287BQ96-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ96/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVAMRSRSIGECALPSAYIRSAKSAPVLIHTSKPFLPDIVLTPLSDELSDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTEASSISRSTESHITDTHSRESSLEVGDSIYDHLCHLIDPVELADSAFEQIQYIDLEGDDDLLSSLKEYFKENQESHSKNELGKDTASQEVSIAVNRDERSSLDNLEYIDQESKSENTTCFVGTPESIQFQKEPNSAVFMSDSASNQLDSFMRTKTEKCKQLNSDHQSSEPSSGSPCDKEKRKHLYRQTATELDACVDITLAEKVKAVQINENITVPHVMHAKKTTLKAPVNRRMPHVTSTSKLSPTKRSLSETVTHRAKIMKIATKKRNSVHVTFRPSTESVQFYNPLENKEAPWKMRLRKLSGFTSSSSSSTGTSNSHTSSDSVTELVKPGVYRPLDTISTASVSSKTIKESTEIPTATSQKEGIASNQLGSRSTPRSSSHEAGLQQGSLGGVYKTVVHALSKPKANVSPQRQNRMPPEAPLRDLYSHVMGYFGRKAAVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH", "length": 2543, "header": "tr|A0A287BQ96-1|A0A287BQ96_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=1 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64363630, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064523.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064523.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058283.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058283.1" } ] } }, { "isoform_ac": "A0A4X1TCF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCF7/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKEAEQNATRGSTEGSVQSCNGLFWKESCSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH", "length": 2050, "header": "tr|A0A4X1TCF7-1|A0A4X1TCF7_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=4 SV=1 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64363630, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085223.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085223.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073682.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073682.1" } ] } }, { "isoform_ac": "A0A5G2QAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGHKSQREELDAILFIFEKILQLLPERIHQRWQFHSIGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVAMRSRSIGECALPSAYIRSAKSAPVLIHTSKPFLPDIVLTPLSDELSDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTEASSISRSTESHITDTHSRESSLEVGDSIYDHLCHLIDPVELADSAFEQIQYIDLEGDDDLLSSLKEYFKENQESHSKNELGKDTASQEVSIAVNRDERSSLDNLEYIDQESKSENTTCFVGTPESIQFQKEPNSAVFMSDSASNQLDSFMRTKTEKCKQLNSDHQSSEPSSGSPCDKEKRKHLYRQTATELDACVDITLAEKVKAVQINENITVPHVMHAKKTTLKAPVNRRMPHVTSTSKLSPTKRSLSETVTHRAKIMKIATKKRNSVHVTFRPSTESVQFYNPLENKEAPWKMRLRKLSGFTSSSSSSTGTSNSHTSSDSVTELVKPGVYRPLDTISTASVSSKTIKESTEIPTATSQKEGIASNQLGSRSTPRSSSHEAGLQQGSLGGVYKTVVHALSKPKANVSPQRQNRMPPEAPLRDLYSHVMGYFGRKAAVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2590, "header": "tr|A0A5G2QAH7-1|A0A5G2QAH7_PIG Isoform 1 of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=2 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64371503, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066519.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066519.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060378.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060378.2" } ] } }, { "isoform_ac": "A0A5G2QR52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR52/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKVNKEDMSSKLPPLNSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2048, "header": "tr|A0A5G2QR52-1|A0A5G2QR52_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=1 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64371503, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086220.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086220.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067397.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067397.1" } ] } }, { "isoform_ac": "A0A8W4FF40-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF40/entry", "sequence": { "sequence": "MFSKKPHGDVKKSTQKVLDTKKDALTRLKHLRIVIENAESIDLKQFFDQHFSHIYYVFFENFVTIEASLKQKGLILKKLLHTGNSLKIRREGVRLFLLWLQALQNNCSREQLWMFSCLIPGFSAPQSEYGPRTLDNLINPPLNLQETQVTIEEITPLVPPQSGDKGQEDLTSYFLEALLKYIVIQVKSLEWKNKENQERGFSFLFSHFKKYYLPYIFPNICKENSLYHPVLDIPQMRPKPHYVMIKKDAETNEAIYCTKEPFIKARVIVIRWLVSFWLEPKPHTGPHIPGMEGEVLPKNIQRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKGAVPVIDSSSRHAPSLQSSTETMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDAGSYPEILPSETPTATQVDGADLASPMSPRTSKSRMSMKLRRSSGSANKS", "length": 2027, "header": "tr|A0A8W4FF40-1|A0A8W4FF40_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=1 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64371503, "end_pos": 64141484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095650.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095650.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078049.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078049.1" } ] } }, { "isoform_ac": "I3LKM7-1", "url": "https://www.uniprot.org/uniprotkb/I3LKM7/entry", "sequence": { "sequence": "FLGPLLPYKEVCRAAASLVSREENKNDNADKADRTTEPEQSHSNTSTLTEREPSSSSLCSIDEEHLTDIEIVRRVFSSKRSNVNFVTEIFRQAFLLPICEAAAMRKVVKVYQEWIQQEEKPLFMQEPEEIVISSSDLPCIDNVTDHDISVEEGEKREEENGTNIADHVRNSTWTKNGTYQDVLHNASEEATEQNIRAGTQAVLQVFIINSSNIFLLEPANEIKSLLDEHTDMCKRILNIYRFMVVQVSMDKKTWEQMLLVLLRVTESVLKMPSQTFLQFQGKKNMTLAGRLAGPLFQTLIVAWIKANLNVYISRELWDDLLSVLSSLTYWEELATEWSLTMETLTKVLARNLYSLDLSDLPLDKLSEQKQKKHKGKGVGHEFQKVSVDKSFSRGWSRDQPGQAPMRQRSATTTGSPGTEKARSIVRQKTVDIDDAQILPRPTRVRHFSQSEDSGNEVFGALSEEQPLPRSSSTSDILEPFTVERAKEAEQNATRGSTEGSVQSCNGLFWKESCSDIGSSNANVPDLMDEFIAERLRSGNASTMTRRGSSPGSLEIPKDLPDILNKQNQMRPIDDPGVPSEWTSPASAGSSDLISSDSHSDSFSAFQYDGRKFDNFGFGADTGTASSADVDSGSGHYHSAEEQEVASLTTLHIDSETSSLNQQAFSTEVATVTGSESASPVHSALGSRSQTPSPSTLNIDHMEQKDLQLDEKLHHSVLQTPDDLEISEFPSECCSVMAGGTLTGWHADVATVMWRRMLGILGDVNAIMDPEIHAQVFDYLCELWQNLAKIRDNLGISTDNLTSPSPPVLIPPLRILTPWLFKATMLTDKYKQGKLHAYKLICNTMKRRQDVSPNRDFLTHFYNIMHCGLLHIDQDIVNTIIKHCSPQFFSLGLPGATMLIMDFIVAAGRVASSAFLNAPRVEAQVLLGSLVCFPNLYCELPALHPNIPDIAVSQFTDVKELIIKTVLSSARDEPSGPARCVALCSLGIWICEELVHESHHPQIKEALNVICVSLKFTNKTVAHVACNMLHMLVHYVPRLQIYQPDSPLKIIQILIATITHLLPSTEASSYEMDKRLVVSLLLCLLDWIMALPLKTLLQPVHATGAENDKIEKSVLNCIYKVLHGCVYGAQCFSNPRYFPLSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQQGLISIAARTVITHLVNHLGHYPMSGGPAMLTSQVCENHDNHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESIPGGGLSAGLASANSNVRIIVRDLSGKYSWDSAILYGPPLVSGLSEPTSLILSLSHQEKLEEPPISSECLEDVTVKDGLSLQFKRRFRETVPTWDTIRDEEDVLDELLQYLGVTSPECLQRTGISLNIPAPQPVCISEKQENDVINAILKQHTEEKEFVEKHFNDLNMKAVEQDEPTPQKPQSAFYYCRLLLSILGMNSWDKRRSFHLLKKNEKLLRELRNLDSRQCRETHKIAVFYVAEGQEDKHSILTNTGGSQAYEDFVAGLGWEVNLTNHCGFMGGLQKNKSTGLTTPYFATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHTRDYRRGIIPTEFGDVLIVIYPMKNHMFSIQIMKKPEVPFFGPLFDGAIVNGKVLPIMVRATAINASRALKSLIPLYQNFYEERARYLQTIVQHHLEPTTFEDFAAQVFSPAPYHHLPSDADH", "length": 1725, "header": "tr|I3LKM7-1|I3LKM7_PIG Computationally mapped isoform of Ral GTPase activating protein catalytic subunit alpha 1 OS=Sus scrofa OX=9823 GN=RALGAPA1 PE=1 SV=3 CANONICAL=A0A5G2QAH7-1" }, "locus": { "chromosome": "7", "start_pos": 64363630, "end_pos": 64201641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024175.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024175.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024642.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024642.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013407", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "resource": "Reactome", "description": "RHOH GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1090, "end_pos": 1092, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1286, "end_pos": 1288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1357, "end_pos": 1359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1617, "end_pos": 1619, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1835, "end_pos": 1837, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2069, "end_pos": 2071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2070, "end_pos": 2072, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2354, "end_pos": 2356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2368, "end_pos": 2370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2485, "end_pos": 2487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2588, "end_pos": 2590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 495, "end_pos": 497, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 994, "end_pos": 996, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QAH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAH7" }, { "id": "PS50085", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50085" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rap-GAP", "eco_id": "ECO_0000259", "start_pos": 2303, "end_pos": 2511, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1090, "end_pos": 1092 }, { "start_pos": 1286, "end_pos": 1288 }, { "start_pos": 1357, "end_pos": 1359 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 1617, "end_pos": 1619 }, { "start_pos": 1835, "end_pos": 1837 }, { "start_pos": 2069, "end_pos": 2071 }, { "start_pos": 2070, "end_pos": 2072 }, { "start_pos": 2354, "end_pos": 2356 }, { "start_pos": 2368, "end_pos": 2370 }, { "start_pos": 2485, "end_pos": 2487 }, { "start_pos": 2588, "end_pos": 2590 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 495, "end_pos": 497 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 609, "end_pos": 611 }, { "start_pos": 994, "end_pos": 996 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAK2-1", "uniprot_ac": "A0A5G2QAK2", "uniprot_id": "A0A5G2QAK2_PIG", "mass": { "chemical_mass": 14561.0, "monoisotopic_mass": 14561.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042766", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042766", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QAK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYHIFLIYSSVNGHLGCFHVFVIMKGDAVNIRVHVSFSVRVLSGYMHRSGIAGSYGSSVFGFLRYFHTLFHSGCTNLHSHQRCSRVPFSPHPFQHLLFVDLLMMAILVPHWPLIAPHYSFDLHFSNN", "length": 127, "header": "tr|A0A5G2QAK2-1|A0A5G2QAK2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAK2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2/entry", "sequence": { "sequence": "MYHIFLIYSSVNGHLGCFHVFVIMKGDAVNIRVHVSFSVRVLSGYMHRSGIAGSYGSSVFGFLRYFHTLFHSGCTNLHSHQRCSRVPFSPHPFQHLLFVDLLMMAILVPHWPLIAPHYSFDLHFSNN", "length": 127, "header": "tr|A0A5G2QAK2-1|A0A5G2QAK2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAK2-1" }, "locus": { "chromosome": "2", "start_pos": 28030127, "end_pos": 28029747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071067.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071067.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061422.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061422.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 127, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAK2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAM0-1", "uniprot_ac": "A0A5G2QAM0", "uniprot_id": "A0A5G2QAM0_PIG", "mass": { "chemical_mass": 41952.0, "monoisotopic_mass": 41952.0 }, "refseq": { "ac": "XP_003125595", "name": "NIPA-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125595" }, "gene_names": [ { "name": "NIPAL2", "type": "recommended", "evidence": [ { "id": "A0A5G2QAM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ] }, { "name": "NIPAL2", "type": "synonym", "evidence": [ { "id": "XP_003125595", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125595" } ] } ], "protein_names": [ { "name": "NIPA like domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QAM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0/entry#names_and_taxonomy" } ] }, { "name": "NIPA-like protein 2", "type": "synonym", "evidence": [ { "id": "XP_003125595", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125595" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NIPAL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0", "locus": { "chromosome": "4", "start_pos": 38574255, "end_pos": 38491285, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031267", "url": "https://www.ensembl.org/id/ENSSSCG00000031267" } ] } } ], "crossref": [ { "id": "A0A5G2QAM0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031267", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031267", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522074", "url": "https://www.ncbi.nlm.nih.gov/gene/100522074", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522074", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522074", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QAM0", "url": "https://www.orthodb.org/?gene=A0A5G2QAM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12570:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12570:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5223345", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125595", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BCL5", "url": "https://www.uniprot.org/uniprotkb/A0A287BCL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPAPGGPGDSSLVALDELSRNFTYGALGAGNGSLSGAWYRRNQIHLFGALLAILGNLVISISLNIQKYSHLQLAHQEHPRPYFKSVLWWAGVALMAVGETGNFAAYGFAPITLIAPLGCMSVTGSAIISAMFLKENLRASDLLGMTLAFAGTYLLVTFAPNITQAISARTVQYYFVGWQFMIYVILEILLFCILLYFHKRKGMKHIVILLTLVALLASVTVISVKAVSGMITFSVTDKMQLTYPIFYIMFITMIASCVFQVKLLSQATKLYNTATVVPVNHIFFTTSAIIAGIVFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREKEHLPQSYIDFGNVPGKQMLDKIQPDSNGLSYGTLPDGSDSTKSPSGEKKEV", "length": 383, "header": "tr|A0A5G2QAM0-1|A0A5G2QAM0_PIG Isoform 1 of NIPA like domain containing 2 OS=Sus scrofa OX=9823 GN=NIPAL2 PE=3 SV=1 CANONICAL=A0A5G2QAM0-1" }, "isoforms": [ { "isoform_ac": "A0A287BCL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCL5/entry", "sequence": { "sequence": "MATPAPGGPGDSSLVALDELSRNFTYGALGAGNGSLSGAWYRRNQIHLFGALLAILGNLVISISLNIQKYSHLQLAHQEHPRPYFKSVLWWAGVALMAVGETGNFAAYGFAPITLIAPLGCMSVTGSAIISAMFLKENLRASDLLGMTLAFAGTYLLVTFAPNITQAISARTVQYYFVGWQFMIYVILEILLFCILLYFHKRKGMKHIVILLTLVALLASVTVISVKAVSGMITFSVTDKMQLTYPIFYIMFITMIASCVFQVKLLSQATKLYNTATVVPVNHIFFTTSAIIAGIVFYQEFLGAAFLTVFIYLFGNREKEHLPQSYIDFGNVPGKQMLDKIQPDSNGLSYGTLPDGSDSTKSPSGEKKEV", "length": 370, "header": "tr|A0A287BCL5-1|A0A287BCL5_PIG Computationally mapped isoform of NIPA like domain containing 2 OS=Sus scrofa OX=9823 GN=NIPAL2 PE=3 SV=2 CANONICAL=A0A5G2QAM0-1" }, "locus": { "chromosome": "4", "start_pos": 38573047, "end_pos": 38491377, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062458.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062458.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053861.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053861.2" } ] } }, { "isoform_ac": "A0A5G2QAM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0/entry", "sequence": { "sequence": "MATPAPGGPGDSSLVALDELSRNFTYGALGAGNGSLSGAWYRRNQIHLFGALLAILGNLVISISLNIQKYSHLQLAHQEHPRPYFKSVLWWAGVALMAVGETGNFAAYGFAPITLIAPLGCMSVTGSAIISAMFLKENLRASDLLGMTLAFAGTYLLVTFAPNITQAISARTVQYYFVGWQFMIYVILEILLFCILLYFHKRKGMKHIVILLTLVALLASVTVISVKAVSGMITFSVTDKMQLTYPIFYIMFITMIASCVFQVKLLSQATKLYNTATVVPVNHIFFTTSAIIAGIVFYQEFLGAAFLTVFIYLFGCFLSFLGVFLVTRNREKEHLPQSYIDFGNVPGKQMLDKIQPDSNGLSYGTLPDGSDSTKSPSGEKKEV", "length": 383, "header": "tr|A0A5G2QAM0-1|A0A5G2QAM0_PIG Isoform 1 of NIPA like domain containing 2 OS=Sus scrofa OX=9823 GN=NIPAL2 PE=3 SV=1 CANONICAL=A0A5G2QAM0-1" }, "locus": { "chromosome": "4", "start_pos": 38573047, "end_pos": 38491377, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083952.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083952.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060434.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522074", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522074", "resource": "KEGG Pathway" }, { "id": "R-SSC-5223345", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "resource": "Reactome", "description": "Miscellaneous transport and binding events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "magnesium ion transport", "id": "GO:0015693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015693", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "magnesium ion transmembrane transporter activity", "id": "GO:0015095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015095", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 383, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAM0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAM2-1", "uniprot_ac": "A0A5G2QAM2", "uniprot_id": "A0A5G2QAM2_PIG", "mass": { "chemical_mass": 22749.0, "monoisotopic_mass": 22749.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046579", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046579", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12659", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12659", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12659:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12659:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QAM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSQGPRTPASGCYYLNALTPESQEMYLRFDQTARRSPYRMSRILARHQLVTKIQQAEIEAKEACDWLRAAGFPQYAQLYEVFSQPFFSLLLHSTFATPGAYADAYLRLRLASAPSFFFTFCCALSASHFFTTHPNSAFSFKDSGIRSFSAPPSLFFSFSVTVLSFLESTINELLIHFLDNHNTHYLETFLELCLHENV", "length": 199, "header": "tr|A0A5G2QAM2-1|A0A5G2QAM2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAM2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2/entry", "sequence": { "sequence": "MFSQGPRTPASGCYYLNALTPESQEMYLRFDQTARRSPYRMSRILARHQLVTKIQQAEIEAKEACDWLRAAGFPQYAQLYEVFSQPFFSLLLHSTFATPGAYADAYLRLRLASAPSFFFTFCCALSASHFFTTHPNSAFSFKDSGIRSFSAPPSLFFSFSVTVLSFLESTINELLIHFLDNHNTHYLETFLELCLHENV", "length": 199, "header": "tr|A0A5G2QAM2-1|A0A5G2QAM2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAM2-1" }, "locus": { "chromosome": "11", "start_pos": 9690522, "end_pos": 9579350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073174.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073174.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061447.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061447.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 98, "start_aa": "Thr", "end_pos": 98, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr98", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 199, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAM2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 98 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAP2-1", "uniprot_ac": "A0A5G2QAP2", "uniprot_id": "A0A5G2QAP2_PIG", "mass": { "chemical_mass": 12560.0, "monoisotopic_mass": 12560.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAP2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045256", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045256", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QAP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTGVSWYLTVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSSAHFSVGLLVFLLVSCVSCLYISEIKPLSVASFETIFSHSVRFFFVAVVVFNGFLYCAKAFEFD", "length": 112, "header": "tr|A0A5G2QAP2-1|A0A5G2QAP2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAP2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2/entry", "sequence": { "sequence": "MMAILTGVSWYLTVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSSAHFSVGLLVFLLVSCVSCLYISEIKPLSVASFETIFSHSVRFFFVAVVVFNGFLYCAKAFEFD", "length": 112, "header": "tr|A0A5G2QAP2-1|A0A5G2QAP2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAP2-1" }, "locus": { "chromosome": "2", "start_pos": 40953552, "end_pos": 40951004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079560.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079560.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061472.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAP2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAT7-1", "uniprot_ac": "A0A5G2QAT7", "uniprot_id": "A0A5G2QAT7_PIG", "mass": { "chemical_mass": 25625.0, "monoisotopic_mass": 25625.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAT7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAT7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046535", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046535", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QAT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKGSLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAVEIRAKINPWDLIKLKSFCTAKETKKKTKRQLSEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKGDIQMANKHMKQCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWSGVWRKGNPLALLVGM", "length": 222, "header": "tr|A0A5G2QAT7-1|A0A5G2QAT7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAT7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7/entry", "sequence": { "sequence": "MGKGSLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAVEIRAKINPWDLIKLKSFCTAKETKKKTKRQLSEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKGDIQMANKHMKQCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWSGVWRKGNPLALLVGM", "length": 222, "header": "tr|A0A5G2QAT7-1|A0A5G2QAT7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAT7-1" }, "locus": { "chromosome": "1", "start_pos": 85690758, "end_pos": 85690093, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079843.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079843.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060519.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060519.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAT7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAT7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 222, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAT7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAT7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 198, "end_pos": 200 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAV7-1", "uniprot_ac": "A0A5G2QAV7", "uniprot_id": "A0A5G2QAV7_PIG", "mass": { "chemical_mass": 100821.0, "monoisotopic_mass": 100821.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QAV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QAV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042370", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042370", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QAV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKTKQEA", "length": 868, "header": "tr|A0A5G2QAV7-1|A0A5G2QAV7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAV7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKTKQEA", "length": 868, "header": "tr|A0A5G2QAV7-1|A0A5G2QAV7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAV7-1" }, "locus": { "chromosome": "8", "start_pos": 42609577, "end_pos": 42606974, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085439.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085439.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061552.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061552.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 868, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QAV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAV7" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 862, "end_pos": 864 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAX4-1", "uniprot_ac": "A0A5G2QAX4", "uniprot_id": "A0A5G2QAX4_PIG", "mass": { "chemical_mass": 60442.0, "monoisotopic_mass": 60442.0 }, "refseq": {}, "gene_names": [ { "name": "NT5DC3", "type": "recommended", "evidence": [ { "id": "A0A5G2QAX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ] } ], "protein_names": [ { "name": "5'-nucleotidase domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QAX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NT5DC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4", "locus": { "chromosome": "5", "start_pos": 80692941, "end_pos": 80644245, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000853", "url": "https://www.ensembl.org/id/ENSSSCG00000000853" } ] } } ], "crossref": [ { "id": "A0A5G2QAX4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAX4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000853", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000853", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07522", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07522", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YLWSRYK", "url": "https://omabrowser.org/oma/group/YLWSRYK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05761", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05761", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRK2", "url": "https://www.uniprot.org/uniprotkb/F1SRK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNZ6", "url": "https://www.uniprot.org/uniprotkb/I3LNZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNZ6-1", "url": "https://www.uniprot.org/uniprotkb/I3LNZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RTSLGKVICERRAFGQSVSDPASLCMDNGMWSCSENDITCSELVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPDFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYERSKQILYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAASQLVLQEWKKERKEMREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAAGLPLLQEAQAK", "length": 518, "header": "tr|A0A5G2QAX4-1|A0A5G2QAX4_PIG Isoform 1 of 5'-nucleotidase domain containing 3 OS=Sus scrofa OX=9823 GN=NT5DC3 PE=1 SV=1 CANONICAL=A0A5G2QAX4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4/entry", "sequence": { "sequence": "RTSLGKVICERRAFGQSVSDPASLCMDNGMWSCSENDITCSELVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPDFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYERSKQILYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAASQLVLQEWKKERKEMREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAAGLPLLQEAQAK", "length": 518, "header": "tr|A0A5G2QAX4-1|A0A5G2QAX4_PIG Isoform 1 of 5'-nucleotidase domain containing 3 OS=Sus scrofa OX=9823 GN=NT5DC3 PE=1 SV=1 CANONICAL=A0A5G2QAX4-1" }, "locus": { "chromosome": "5", "start_pos": 80688501, "end_pos": 80644245, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091207.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091207.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061572.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061572.1" } ] } }, { "isoform_ac": "A0A5G2QLB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB8/entry", "sequence": { "sequence": "MMSYLGQSKLVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPDFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYERSKQILYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAASQLVLQEWKKERKEMREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAAGLPLLQEAQAK", "length": 485, "header": "tr|A0A5G2QLB8-1|A0A5G2QLB8_PIG Computationally mapped isoform of 5'-nucleotidase domain containing 3 OS=Sus scrofa OX=9823 GN=NT5DC3 PE=1 SV=1 CANONICAL=A0A5G2QAX4-1" }, "locus": { "chromosome": "5", "start_pos": 80688501, "end_pos": 80646280, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069041.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069041.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062869.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062869.1" } ] } }, { "isoform_ac": "F1SRK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK2/entry", "sequence": { "sequence": "LEKLVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPDFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYERSKQILVRSRCYQKFARIVNPFNVRLTWLACCSRDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRYLGPLSVICYNTSVFLLQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQQTFLESLSVALLSSRLFREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAAGLPLLQEAQAK", "length": 461, "header": "tr|F1SRK2-1|F1SRK2_PIG Computationally mapped isoform of 5'-nucleotidase domain containing 3 OS=Sus scrofa OX=9823 GN=NT5DC3 PE=1 SV=4 CANONICAL=A0A5G2QAX4-1" }, "locus": { "chromosome": "5", "start_pos": 80688501, "end_pos": 80646715, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000930.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000930.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000910.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000910.4" } ] } }, { "isoform_ac": "I3LNZ6-1", "url": "https://www.uniprot.org/uniprotkb/I3LNZ6/entry", "sequence": { "sequence": "LLELVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPDFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYERSKQILVRSRCYQKFARIVNPFNVRLTWLACCSRDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRSFRYLGPLSVICYNTSVFLLQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQQTFLESLSVALLSSRLFREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAAGLPLLQEAQAK", "length": 463, "header": "tr|I3LNZ6-1|I3LNZ6_PIG Computationally mapped isoform of 5'-nucleotidase domain containing 3 OS=Sus scrofa OX=9823 GN=NT5DC3 PE=1 SV=4 CANONICAL=A0A5G2QAX4-1" }, "locus": { "chromosome": "5", "start_pos": 80688501, "end_pos": 80647410, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023398.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023398.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025821.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025821.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PNR2-1", "protein_name": "5'-nucleotidase domain containing 3", "gene_name": "NT5DC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAARSVLAAGWAGCGRRRWGRRLPAAAAPYCTVAPQRERRQPPADMRSYLWSRYKEAKRVTKELVPSIMSNMLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPAEIRKYDYDPNFAIRGLHYDVHRALLMKIDAFHYIQLGTVYRGLSVVPDEEVIAMYDGSHVPLEQMSDFYGKSSQGNTMKQFMDIFSLPEMTLLSCVNEYFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMRFIVGKDWRDLFDVVIVQADKPNFFNDKRRPFRKVNERGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSEIKIMNTEKYIQTMTWLQTLTGLLEHMQVHRDPDSQMILEEWKKERKEMREMNRNFFNAQFGSLFRTDENPTYFLRRLSRFADIYMASLSCLLNYEPDYTFYPRRTPLQHELPGWSDQLCTGTFRIPFLQETVQVK", "length": 546 }, "evidence": [ { "id": "A0A5G2QAX4", "url": "https://omabrowser.org/oma/group/A0A5G2QAX4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZAI6-1", "protein_name": "5'-nucleotidase domain containing 3", "gene_name": "Nt5dc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATVAAAARGVGARAVAGLRSGSGAVARGRPPADCARRLCTAPAAPAAVDMKSYLWARYHEAKRSTDELVPSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQMGTVYRGLSVVPDEEVIDMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQTRAVLAKLAAHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELRIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAQSQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVNHTFYPRRTPLQHELPAWSDSPSAFKAPLLQEAQAK", "length": 546 }, "evidence": [ { "id": "A0A5G2QAX4", "url": "https://omabrowser.org/oma/group/A0A5G2QAX4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MYW0-1", "protein_name": "5'-nucleotidase domain containing 3", "gene_name": "NT5DC3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATAAVTAAARGAGARAVTALRDGCRTAARGRSRTGPTRPLCTAPGTAPDMKRYLWERYREAKRSTEELVPSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPVEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSGNTMKQFMDIFSLPEMTLLSCVNEYFLKNNIDYEPVHLYKDVKDSIRDVHTKGIMYRAIEADIEKYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKVNEKGVLLWDKIYKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKTMNTEQYIQTVAWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKDMREMTKGFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSDRPPAARLPLLQEAQAK", "length": 545 }, "evidence": [ { "id": "A0A5G2QAX4", "url": "https://omabrowser.org/oma/group/A0A5G2QAX4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86UY8-1", "protein_name": "5'-nucleotidase domain-containing protein 3", "gene_name": "NT5DC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTMAAAAVVARGAGARAATAAALRGGCGTAARGRPCAGPARPLCTAPGTAPDMKRYLWERYREAKRSTEELVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFSLPEMTLLSCVNEYFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMSYIVGKDWRDLFDVVIVQAEKPNFFNDKRRPFRKMNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSRVLYFGDHIYSDLADLTLKHGWRTGAIIPELRSELKIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAESQLVLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNYDVSHTFYPRRTPLQHELPAWSERPPTFGTPLLQEAQAK", "length": 548 }, "evidence": [ { "id": "A0A5G2QAX4", "url": "https://omabrowser.org/oma/group/A0A5G2QAX4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "receptor complex", "id": "GO:0043235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043235", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "pmid": "" }, { "name": "5'-nucleotidase activity", "id": "GO:0008253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008253", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAX4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 518, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAX4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAX4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 306, "amino_acid": "Asn", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 306, "end_pos": 306, "start_aa": "Asn", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 308, "amino_acid": "Lys", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 308, "end_pos": 308, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 326, "amino_acid": "Ile", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 326, "end_pos": 326, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 35, "amino_acid": "Glu", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 35, "end_pos": 35, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QAX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 359, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 359, "end_pos": 359, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 41, "amino_acid": "Ser", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 41, "end_pos": 41, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QAX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAX4" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 74, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 74, "end_pos": 74, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAY6-1", "uniprot_ac": "A0A5G2QAY6", "uniprot_id": "A0A5G2QAY6_PIG", "mass": { "chemical_mass": 14248.0, "monoisotopic_mass": 14248.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAY6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAY6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041333", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041333", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QAY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVYFSMNVLTRYMPRSGNAWSYGSSICSFLRNFHTVSHSGCTNLHSHQQCKRVHFSPHHLQHFLLVDILTGVRWYIMVVLICISLIICDVEHFFVWLLVIHTSLEKGLFRSSTHFSFGLFV", "length": 122, "header": "tr|A0A5G2QAY6-1|A0A5G2QAY6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAY6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6/entry", "sequence": { "sequence": "MQVYFSMNVLTRYMPRSGNAWSYGSSICSFLRNFHTVSHSGCTNLHSHQQCKRVHFSPHHLQHFLLVDILTGVRWYIMVVLICISLIICDVEHFFVWLLVIHTSLEKGLFRSSTHFSFGLFV", "length": 122, "header": "tr|A0A5G2QAY6-1|A0A5G2QAY6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAY6-1" }, "locus": { "chromosome": "1", "start_pos": 118369849, "end_pos": 118369484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087319.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087319.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061587.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061587.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAY6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAY6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAY6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAY8-1", "uniprot_ac": "A0A5G2QAY8", "uniprot_id": "A0A5G2QAY8_PIG", "mass": { "chemical_mass": 11129.0, "monoisotopic_mass": 11129.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QAY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QAY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048383", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048383", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QAY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILYSATSLNLLIRSSRFWVDSLGFYIYSIMSSAYCDSFTSSLPIWMPFIAFVGLIAVARTSSTVLNNRGESRHPCLVPDFSGKAFSFSPLSIIFAVGLS", "length": 101, "header": "tr|A0A5G2QAY8-1|A0A5G2QAY8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAY8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8/entry", "sequence": { "sequence": "MLILYSATSLNLLIRSSRFWVDSLGFYIYSIMSSAYCDSFTSSLPIWMPFIAFVGLIAVARTSSTVLNNRGESRHPCLVPDFSGKAFSFSPLSIIFAVGLS", "length": 101, "header": "tr|A0A5G2QAY8-1|A0A5G2QAY8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QAY8-1" }, "locus": { "chromosome": "8", "start_pos": 88435093, "end_pos": 88434791, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071289.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071289.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061592.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061592.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAY8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB01-1", "uniprot_ac": "A0A5G2QB01", "uniprot_id": "A0A5G2QB01_PIG", "mass": { "chemical_mass": 17091.0, "monoisotopic_mass": 17091.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QB01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01", "locus": {} } ], "crossref": [ { "id": "A0A5G2QB01", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB01", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDRIMEITQSGQQTENQIKKHERNKRDLWDNIKHDNLGIKGISEGEEKEKGFENIFKEIMAEIFPSQKETDIKLQQAQKAPNKLNSSMPTPRHIIIKMVKVKERILKAAREMLIVIYKGTPKRLSADFSQKNYMPEKTGKIYSKF", "length": 146, "header": "tr|A0A5G2QB01-1|A0A5G2QB01_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB01-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01/entry", "sequence": { "sequence": "MEDRIMEITQSGQQTENQIKKHERNKRDLWDNIKHDNLGIKGISEGEEKEKGFENIFKEIMAEIFPSQKETDIKLQQAQKAPNKLNSSMPTPRHIIIKMVKVKERILKAAREMLIVIYKGTPKRLSADFSQKNYMPEKTGKIYSKF", "length": 146, "header": "tr|A0A5G2QB01-1|A0A5G2QB01_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB01-1" }, "locus": { "chromosome": "X", "start_pos": 70050952, "end_pos": 70050515, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084728.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084728.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060600.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060600.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 146, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB01" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QB01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB01" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB17-1", "uniprot_ac": "A0A5G2QB17", "uniprot_id": "A0A5G2QB17_PIG", "mass": { "chemical_mass": 84160.0, "monoisotopic_mass": 84160.0 }, "refseq": {}, "gene_names": [ { "name": "LRCH2", "type": "recommended", "evidence": [ { "id": "A0A5G2QB17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and calponin homology domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QB17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRCH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17", "locus": { "chromosome": "X", "start_pos": 94486564, "end_pos": 94589899, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012595", "url": "https://www.ensembl.org/id/ENSSSCG00000012595" } ] } } ], "crossref": [ { "id": "A0A5G2QB17", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB17", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012595", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012595", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QB17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCH0", "url": "https://www.uniprot.org/uniprotkb/I3LCH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCH0-1", "url": "https://www.uniprot.org/uniprotkb/I3LCH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGNSGGCGAAGGGGGGAGGGGGGGGSGTLVVPIPVPTLFGQPFPNGPQWNPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVLSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHSIGSKLDSQKDQEVYDFIDPNTDDVAVPEQGDAHIGSVSFLKGKEKGPEKSQKNEELGGGKRFGKELLLAEEEDDDLKEVTDLRKIAAQLLQQEQKNRILNHSTSVTRNKPKQTVECEKSVSADEVNSPLSPLRWQPLESQKDQIDEQQWPESQPIIWQSEERRRSKQIRKEYFKYKSSRKSSSGNENEQDSDNANMSPQSPVSSEEYDRTDGFTHGPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSTA", "length": 764, "header": "tr|A0A5G2QB17-1|A0A5G2QB17_PIG Isoform 1 of Leucine rich repeats and calponin homology domain containing 2 OS=Sus scrofa OX=9823 GN=LRCH2 PE=4 SV=1 CANONICAL=A0A5G2QB17-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17/entry", "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGNSGGCGAAGGGGGGAGGGGGGGGSGTLVVPIPVPTLFGQPFPNGPQWNPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVLSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHSIGSKLDSQKDQEVYDFIDPNTDDVAVPEQGDAHIGSVSFLKGKEKGPEKSQKNEELGGGKRFGKELLLAEEEDDDLKEVTDLRKIAAQLLQQEQKNRILNHSTSVTRNKPKQTVECEKSVSADEVNSPLSPLRWQPLESQKDQIDEQQWPESQPIIWQSEERRRSKQIRKEYFKYKSSRKSSSGNENEQDSDNANMSPQSPVSSEEYDRTDGFTHGPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSTA", "length": 764, "header": "tr|A0A5G2QB17-1|A0A5G2QB17_PIG Isoform 1 of Leucine rich repeats and calponin homology domain containing 2 OS=Sus scrofa OX=9823 GN=LRCH2 PE=4 SV=1 CANONICAL=A0A5G2QB17-1" }, "locus": { "chromosome": "X", "start_pos": 94589869, "end_pos": 94489208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078150.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078150.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061233.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061233.1" } ] } }, { "isoform_ac": "I3LCH0-1", "url": "https://www.uniprot.org/uniprotkb/I3LCH0/entry", "sequence": { "sequence": "MAASQGGGGNSGGGGCGGGGNSGGCGAAGGGGGGAGGGGGGGGSGTLVVPIPVPTLFGQPFPNGPQWNPGSLQPQHTVRSLDRALEEAGNSGILSLSGRKLRDFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEAIKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVLSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTSRNDSHSIGSKLDSQKDQEVYDFIDPNTDDVAVPEQGDAHIGSVSFLKGKEKGPEKSQKNEELGGGKRFGKELLLAEEEDDDLKEVTDLRKIAAQLLQQEQKNRILNHSTSVTRNKPKQTVECEKSVSADEVNSPLSPLRWQPLESQKDQIDEQQWPESQPIIWQSEERRRSKQIRKEYFKYKSSRKSSSGNENEEYDRTDGFTHGPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHLREEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSTA", "length": 747, "header": "tr|I3LCH0-1|I3LCH0_PIG Computationally mapped isoform of Leucine rich repeats and calponin homology domain containing 2 OS=Sus scrofa OX=9823 GN=LRCH2 PE=4 SV=3 CANONICAL=A0A5G2QB17-1" }, "locus": { "chromosome": "X", "start_pos": 94589869, "end_pos": 94489208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028402.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028402.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021745.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021745.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 491, "end_pos": 493, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB17-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 764, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB17-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB17" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QB17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB17" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 641, "end_pos": 754, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 491, "end_pos": 493 }, { "start_pos": 586, "end_pos": 588 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB35-1", "uniprot_ac": "A0A5G2QB35", "uniprot_id": "A0A5G2QB35_PIG", "mass": { "chemical_mass": 53466.0, "monoisotopic_mass": 53466.0 }, "refseq": {}, "gene_names": [ { "name": "LRRC74A", "type": "recommended", "evidence": [ { "id": "A0A5G2QB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 74A", "type": "synonym", "evidence": [ { "id": "A0A5G2QB35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC74A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35", "locus": { "chromosome": "7", "start_pos": 100002655, "end_pos": 99974275, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002391", "url": "https://www.ensembl.org/id/ENSSSCG00000002391" } ] } } ], "crossref": [ { "id": "A0A5G2QB35", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002391", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002391", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24114:SF49", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24114:SF49", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QB35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRWSLGEAAERWQEAGSGPREGPGTMDNDEPLEPETKDEGDTVSASQSSDETLYCEAEAPTVVEKEKPGQESSETDLEIEDTEKLFTTGQKELYLEACRLVAIAIALVSNTTVLTLELADNCIMEEGILSLVEMLQENYYLQEMNISNNNLGLEGARILSEFLQNNTSSLFSLRLSGNNFKEESAELFCQALSVNYRIRTLDLSHNQLSDKAGEYLGQMLALNSGLQSLDLSWNHFCIHGAVALCNGLRVNVALKKLDLSMNSFGNEGASALGEVLRLNSSLAYLDVSCNDISNEGITKLSKGLEVNESLKVLKLFLNPISMDGALLLILSIKRNPKSKMEDIDISNVLVSEQFVKTLDSVCAIHPQLDVLYKAVQGLSIKKTLFTWTNPMKLIQSYAEQQKISVLDFFRSLNPSGEMRMPVGEFRKAMIQQNKVPINRYQVRELMKRLDEKTGMVDFRSARAPRGLPSTLSQPAVLSKAP", "length": 482, "header": "tr|A0A5G2QB35-1|A0A5G2QB35_PIG Isoform 1 of Leucine rich repeat containing 74A OS=Sus scrofa OX=9823 GN=LRRC74A PE=4 SV=2 CANONICAL=A0A5G2QB35-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35/entry", "sequence": { "sequence": "MDRWSLGEAAERWQEAGSGPREGPGTMDNDEPLEPETKDEGDTVSASQSSDETLYCEAEAPTVVEKEKPGQESSETDLEIEDTEKLFTTGQKELYLEACRLVAIAIALVSNTTVLTLELADNCIMEEGILSLVEMLQENYYLQEMNISNNNLGLEGARILSEFLQNNTSSLFSLRLSGNNFKEESAELFCQALSVNYRIRTLDLSHNQLSDKAGEYLGQMLALNSGLQSLDLSWNHFCIHGAVALCNGLRVNVALKKLDLSMNSFGNEGASALGEVLRLNSSLAYLDVSCNDISNEGITKLSKGLEVNESLKVLKLFLNPISMDGALLLILSIKRNPKSKMEDIDISNVLVSEQFVKTLDSVCAIHPQLDVLYKAVQGLSIKKTLFTWTNPMKLIQSYAEQQKISVLDFFRSLNPSGEMRMPVGEFRKAMIQQNKVPINRYQVRELMKRLDEKTGMVDFRSARAPRGLPSTLSQPAVLSKAP", "length": 482, "header": "tr|A0A5G2QB35-1|A0A5G2QB35_PIG Isoform 1 of Leucine rich repeat containing 74A OS=Sus scrofa OX=9823 GN=LRRC74A PE=4 SV=2 CANONICAL=A0A5G2QB35-1" }, "locus": { "chromosome": "7", "start_pos": 100002652, "end_pos": 99974474, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084831.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084831.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061652.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061652.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 482, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB35" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 146, "end_pos": 148 }, { "start_pos": 166, "end_pos": 168 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 280, "end_pos": 282 }, { "start_pos": 308, "end_pos": 310 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB54-1", "uniprot_ac": "A0A5G2QB54", "uniprot_id": "A0A5G2QB54_PIG", "mass": { "chemical_mass": 15432.0, "monoisotopic_mass": 15432.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QB54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54", "locus": {} } ], "crossref": [ { "id": "A0A5G2QB54", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047223", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047223", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QB54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPHVHCTLFTIVKAWKQPQCPSTDDWIKKMWYIYTMEYYSAIKKNKIMPFAATWMELETLILSEVIQKEKDKYHMISLISGIKYMAQMNLSTEKKIMDMENRLVVAKREGEGVGWTGNLGLTDANYCLWNG", "length": 132, "header": "tr|A0A5G2QB54-1|A0A5G2QB54_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QB54-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54/entry", "sequence": { "sequence": "MPPHVHCTLFTIVKAWKQPQCPSTDDWIKKMWYIYTMEYYSAIKKNKIMPFAATWMELETLILSEVIQKEKDKYHMISLISGIKYMAQMNLSTEKKIMDMENRLVVAKREGEGVGWTGNLGLTDANYCLWNG", "length": 132, "header": "tr|A0A5G2QB54-1|A0A5G2QB54_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QB54-1" }, "locus": { "chromosome": "18", "start_pos": 40732097, "end_pos": 40731702, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068350.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068350.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061677.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061677.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 132, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB54" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB56-1", "uniprot_ac": "A0A5G2QB56", "uniprot_id": "A0A5G2QB56_PIG", "mass": { "chemical_mass": 16919.0, "monoisotopic_mass": 16919.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QB56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56", "locus": {} } ], "crossref": [ { "id": "A0A5G2QB56", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050669", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050669", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIATEGKNEKRMKRTEESLRYLWDNIKHTNIHIIGIPEGEEREKGPEKIFKEIITENFPNMGKEILTRVAEAQRIPYGINLRRKIARHVLNKQTKVKYKEKILKAARENQQIIYKGNLIRIKADFFFQQKLCKLEGSIKVSLR", "length": 143, "header": "tr|A0A5G2QB56-1|A0A5G2QB56_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB56-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56/entry", "sequence": { "sequence": "MIATEGKNEKRMKRTEESLRYLWDNIKHTNIHIIGIPEGEEREKGPEKIFKEIITENFPNMGKEILTRVAEAQRIPYGINLRRKIARHVLNKQTKVKYKEKILKAARENQQIIYKGNLIRIKADFFFQQKLCKLEGSIKVSLR", "length": 143, "header": "tr|A0A5G2QB56-1|A0A5G2QB56_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB56-1" }, "locus": { "chromosome": "9", "start_pos": 11493763, "end_pos": 11493335, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103804.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103804.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076596.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076596.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB56-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 143, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB56-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB56" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QB56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB56" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 124, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB84-1", "uniprot_ac": "A0A5G2QB84", "uniprot_id": "A0A5G2QB84_PIG", "mass": { "chemical_mass": 17768.0, "monoisotopic_mass": 17768.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QB84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84", "locus": {} } ], "crossref": [ { "id": "A0A5G2QB84", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB84", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051306", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051306", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB84-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKHESNIRDLWDNIKWANPCIIGIPEGEEKEKGIENIFEEIMAENFPNLKKADIKIQEAQRAPNKLNPNRPTSRHITIKMAKVKDKERILKAAREKQRGNHKGNPTGLSAGFSTEILWARGEWQDIFKVLKGKNVQPRIFYPARIPFKIEEK", "length": 153, "header": "tr|A0A5G2QB84-1|A0A5G2QB84_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB84-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB84-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84/entry", "sequence": { "sequence": "MKKHESNIRDLWDNIKWANPCIIGIPEGEEKEKGIENIFEEIMAENFPNLKKADIKIQEAQRAPNKLNPNRPTSRHITIKMAKVKDKERILKAAREKQRGNHKGNPTGLSAGFSTEILWARGEWQDIFKVLKGKNVQPRIFYPARIPFKIEEK", "length": 153, "header": "tr|A0A5G2QB84-1|A0A5G2QB84_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QB84-1" }, "locus": { "chromosome": "1", "start_pos": 2959910, "end_pos": 2959452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071976.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071976.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB84-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 153, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB84-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB84" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QB84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 111, "start_aa": "Cys", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QB84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB84" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 150, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCB1-1", "uniprot_ac": "A0A5G2QCB1", "uniprot_id": "A0A5G2QCB1_PIG", "mass": { "chemical_mass": 59999.0, "monoisotopic_mass": 59999.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Cytochrome P450 4A11", "type": "recommended", "evidence": [ { "id": "A0A5G2QCB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003891", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003891", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20678", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20678", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050196", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050196", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24291:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24291:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-211935", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211935", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-211958", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211958", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-211979", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211979", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2142691", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142691", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BDA3", "url": "https://www.uniprot.org/uniprotkb/A0A287BDA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BDA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BDA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVPALASVSGLLQVASLLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPSHWLYGHSREFQEEGEQQSLLKRIGKYPSACARWRWGTRALVLVYDPDYMKVVLARSGERETPIHMGENPPSWVPFGNSPSRNVLALPAMAPPCLLMTPLVPLKWSLAWFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQLAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPVIGRELSKPITFPDGRSLPAGIILSLSVYGLHHNPKVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLHFELAPNPSRIPVPIQRVVLKSNNGIHLNLRKLP", "length": 529, "header": "tr|A0A5G2QCB1-1|A0A5G2QCB1_PIG Isoform 1 of Cytochrome P450 4A11 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QCB1-1" }, "isoforms": [ { "isoform_ac": "A0A287BDA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BDA3/entry", "sequence": { "sequence": "MTVPALASVSGLLQVASLLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPSHWLYGHSREFQEEGEQQSLLKRIGKYPSACARWRWGTRALVLVYDPDYMKVVLARSGNGLLLLDGQAWFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQLAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPVIGRELSKPITFPDGRSLPAGIILSLSVYGLHHNPKVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLHFELAPNPSRIPVPIQRVVLKSNNGIHLNLRKLP", "length": 489, "header": "tr|A0A287BDA3-1|A0A287BDA3_PIG Computationally mapped isoform of Cytochrome P450 4A11 OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QCB1-1" }, "locus": { "chromosome": "6", "start_pos": 164695010, "end_pos": 164672525, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044808.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044808.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054098.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054098.2" } ] } }, { "isoform_ac": "A0A5G2QB90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB90/entry", "sequence": { "sequence": "MTVPALASVSGLLQVASLLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPSHWLYGHSREFQEEGEQQSLLKRIGKYPSACARWRWGTRALVLVYDPDYMKVVLARSEPKPHITYKYLIPWLGNGLLLLDGQAWFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQLAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPVIGRELSKPITFPDGRSLPAGIILSLSVYGLHHNPKVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLHFELAPNPSRIPVPIQRVVLKSNNGIHLNLRKLP", "length": 504, "header": "tr|A0A5G2QB90-1|A0A5G2QCB1_PIG Computationally mapped isoform of Cytochrome P450 4A11 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QCB1-1" }, "locus": { "chromosome": "6", "start_pos": 164695010, "end_pos": 164672525, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070232.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070232.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061309.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061309.1" } ] } }, { "isoform_ac": "A0A5G2QCB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1/entry", "sequence": { "sequence": "MTVPALASVSGLLQVASLLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPSHWLYGHSREFQEEGEQQSLLKRIGKYPSACARWRWGTRALVLVYDPDYMKVVLARSGERETPIHMGENPPSWVPFGNSPSRNVLALPAMAPPCLLMTPLVPLKWSLAWFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQLAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPVIGRELSKPITFPDGRSLPAGIILSLSVYGLHHNPKVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLHFELAPNPSRIPVPIQRVVLKSNNGIHLNLRKLP", "length": 529, "header": "tr|A0A5G2QCB1-1|A0A5G2QCB1_PIG Isoform 1 of Cytochrome P450 4A11 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QCB1-1" }, "locus": { "chromosome": "6", "start_pos": 164695010, "end_pos": 164672525, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070249.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070249.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061734.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061734.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-211935", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211935", "resource": "Reactome", "description": "Fatty acids" }, { "id": "R-SSC-211958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211958", "resource": "Reactome", "description": "Miscellaneous substrates" }, { "id": "R-SSC-211979", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211979", "resource": "Reactome", "description": "Eicosanoids" }, { "id": "R-SSC-2142691", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142691", "resource": "Reactome", "description": "Synthesis of Leukotrienes (LT) and Eoxins (EX)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen", "id": "GO:0016712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016712", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCB1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 529, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCB1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCB1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QB93-1", "uniprot_ac": "A0A5G2QB93", "uniprot_id": "A0A5G2QB93_PIG", "mass": { "chemical_mass": 19073.0, "monoisotopic_mass": 19073.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QB93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93", "locus": {} } ], "crossref": [ { "id": "A0A5G2QB93", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045641", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045641", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QB93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RRGEGGKTKENKEEGVGREVQICTAGLSGRRGNASRACWRESLQGLAPPKTTSHLNPFPHCPWPPRVNPLPSFHPTPLPTWPTQTESILCIYNFFFFAATFWGVFSRKKLAQLHTCTDCTTVKLQDSMIRIHIHTGTEIQPEQSLFRPELTGRHCLSFIHSARVCGDLY", "length": 169, "header": "tr|A0A5G2QB93-1|A0A5G2QB93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QB93-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93/entry", "sequence": { "sequence": "RRGEGGKTKENKEEGVGREVQICTAGLSGRRGNASRACWRESLQGLAPPKTTSHLNPFPHCPWPPRVNPLPSFHPTPLPTWPTQTESILCIYNFFFFAATFWGVFSRKKLAQLHTCTDCTTVKLQDSMIRIHIHTGTEIQPEQSLFRPELTGRHCLSFIHSARVCGDLY", "length": 169, "header": "tr|A0A5G2QB93-1|A0A5G2QB93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QB93-1" }, "locus": { "chromosome": "14", "start_pos": 31057484, "end_pos": 31056482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083297.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083297.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061727.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QB93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QB93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QB93" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBA8-1", "uniprot_ac": "A0A5G2QBA8", "uniprot_id": "A0A5G2QBA8_PIG", "mass": { "chemical_mass": 15892.0, "monoisotopic_mass": 15892.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBA8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBA8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051570", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051570", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QBA8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSVCRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMIAILTGVRRYLMVVLICISLKNLVNNKKIAFLFFLIYLFIFLIIFFLFFYFFPLYSKGVRLSLHVYITINFFPQDRIS", "length": 136, "header": "tr|A0A5G2QBA8-1|A0A5G2QBA8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBA8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8/entry", "sequence": { "sequence": "MPKSGIAGSYGSSVCRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMIAILTGVRRYLMVVLICISLKNLVNNKKIAFLFFLIYLFIFLIIFFLFFYFFPLYSKGVRLSLHVYITINFFPQDRIS", "length": 136, "header": "tr|A0A5G2QBA8-1|A0A5G2QBA8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBA8-1" }, "locus": { "chromosome": "15", "start_pos": 101198889, "end_pos": 101198430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080922.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080922.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061329.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061329.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBA8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBA8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 136, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBA8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBA8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBD6-1", "uniprot_ac": "A0A5G2QBD6", "uniprot_id": "A0A5G2QBD6_PIG", "mass": { "chemical_mass": 36027.0, "monoisotopic_mass": 36027.0 }, "refseq": { "ac": "XP_020922786", "name": "phosphoethanolamine/phosphocholine phosphatase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922786" }, "gene_names": [ { "name": "PHOSPHO1", "type": "recommended", "evidence": [ { "id": "A0A5G2QBD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ] }, { "name": "PHOSPHO1", "type": "synonym", "evidence": [ { "id": "XP_020922786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922786" } ] } ], "protein_names": [ { "name": "Phosphoethanolamine/phosphocholine phosphatase", "type": "recommended", "evidence": [ { "id": "A0A5G2QBD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.75", "type": "synonym", "evidence": [ { "id": "A0A5G2QBD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6/entry#names_and_taxonomy" } ] }, { "name": "phosphoethanolamine/phosphocholine phosphatase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020922786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922786" } ] } ], "function": [ { "annotation": "Phosphatase that has a high activity toward phosphoethanolamine (PEA) and phosphocholine (PCho). Involved in the generation of inorganic phosphate for bone mineralization. Acts in a non-redundant manner with PHOSPHO1 in skeletal mineralization: while PHOSPHO1 mediates the initiation of hydroxyapatite crystallization in the matrix vesicles (MVs), ALPL/TNAP catalyzes the spread of hydroxyapatite crystallization in the extracellular matrix.", "evidence": [ { "database": "UniProtKB", "id": "I3L6E7", "url": "https://www.uniprot.org/uniprotkb/I3L6E7#function" }, { "database": "UniProtKB", "id": "ARBA00056980", "url": "https://www.uniprot.org/uniprotkb/ARBA00056980#function" }, { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHOSPHO1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026701", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026701", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16418", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16418", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621753", "url": "https://www.ncbi.nlm.nih.gov/gene/100621753", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621753", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621753", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SRCPDNM", "url": "https://omabrowser.org/oma/group/SRCPDNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QBD6", "url": "https://www.orthodb.org/?gene=A0A5G2QBD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20889", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20889", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20889:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20889:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483191", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483191", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1483213", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020922786", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922786", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10492", "url": "https://www.rhea-db.org/rhea/10492", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "16089", "url": "https://www.rhea-db.org/rhea/16089", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E7", "url": "https://www.uniprot.org/uniprotkb/I3L6E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGCFPIAGLRCLSRPLLLFPLPHLSPRSWMCQRLWPWPANQPLPGRLPPRLPSLAPSSSSCSSLPCSQDDSRMAVQGSPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPDSLRATYREGFYNEYMQRVFQYLGEQGVRPRDLRAVYEAIPLSPGMSDLLQFVSKQGACFEVILISDANTFGVESALRAAGHFSLFRRIFSNPSGPDARGLLALRPFHTHTCARCPANMCKHKVLSDYLRERAHDGVHFERLFYVGDGANDFCPMGLLAGSDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRLHLQQVLKTC", "length": 322, "header": "tr|A0A5G2QBD6-1|A0A5G2QBD6_PIG Isoform 1 of Phosphoethanolamine/phosphocholine phosphatase OS=Sus scrofa OX=9823 GN=PHOSPHO1 PE=3 SV=1 CANONICAL=A0A5G2QBD6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6/entry", "sequence": { "sequence": "MSGCFPIAGLRCLSRPLLLFPLPHLSPRSWMCQRLWPWPANQPLPGRLPPRLPSLAPSSSSCSSLPCSQDDSRMAVQGSPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPDSLRATYREGFYNEYMQRVFQYLGEQGVRPRDLRAVYEAIPLSPGMSDLLQFVSKQGACFEVILISDANTFGVESALRAAGHFSLFRRIFSNPSGPDARGLLALRPFHTHTCARCPANMCKHKVLSDYLRERAHDGVHFERLFYVGDGANDFCPMGLLAGSDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRLHLQQVLKTC", "length": 322, "header": "tr|A0A5G2QBD6-1|A0A5G2QBD6_PIG Isoform 1 of Phosphoethanolamine/phosphocholine phosphatase OS=Sus scrofa OX=9823 GN=PHOSPHO1 PE=3 SV=1 CANONICAL=A0A5G2QBD6-1" }, "locus": { "chromosome": "12", "start_pos": 25445295, "end_pos": 25442451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068833.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068833.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061783.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061783.1" } ] } }, { "isoform_ac": "I3L6E7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E7/entry", "sequence": { "sequence": "MCQRLWPWPANQPLPGRLPPRLPSLAPSSSSCSSLPCSQDDSRMAVQGSPRFLLTFDFDETIVDENSDDSIVRAAPGQRLPDSLRATYREGFYNEYMQRVFQYLGEQGVRPRDLRAVYEAIPLSPGMSDLLQFVSKQGACFEVILISDANTFGVESALRAAGHFSLFRRIFSNPSGPDARGLLALRPFHTHTCARCPANMCKHKVLSDYLRERAHDGVHFERLFYVGDGANDFCPMGLLAGSDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRLHLQQVLKTC", "length": 292, "header": "tr|I3L6E7-1|I3L6E7_PIG Computationally mapped isoform of Phosphoethanolamine/phosphocholine phosphatase OS=Sus scrofa OX=9823 GN=PHOSPHO1 PE=3 SV=2 CANONICAL=A0A5G2QBD6-1" }, "locus": { "chromosome": "12", "start_pos": 25443326, "end_pos": 25442451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028456.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028456.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019598.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019598.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621753", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621753", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483191", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483191", "resource": "Reactome", "description": "Synthesis of PC" }, { "id": "R-SSC-1483213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "resource": "Reactome", "description": "Synthesis of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V6P4-1", "protein_name": "Phosphoethanolamine/phosphocholine phosphatase", "gene_name": "Phospho1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPWPGERGSHHLLKPHCFSCCLLASDSGRNPTCWSWMCQRPWLWPANQPLPGRLPPRRLSLAPSSCSSSPCSQDGRMAAPGAPRFLLTFDFDETIVDENSDDSIVRAAPGQQLPESLRATYREGYYNEYMQRVFKYLGEQGVRPRDLRAVYETIPLSPGMGDLLQFIAKQGSCFEVILISDANTFGVESALRAAGHHSLFRRILSNPSGPDARGLLTLRPFHTHSCSRCPANMCKHKVLSEYLRERARDGVHFERLFYVGDGANDFCPMGLLAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRAHVVPWETAADVRQHLQQVLKMC", "length": 325 }, "evidence": [ { "id": "A0A5G2QBD6", "url": "https://omabrowser.org/oma/group/A0A5G2QBD6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9FZ62-1", "protein_name": "Inorganic pyrophosphatase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAKNNNIVIVFDFDKTIIDVDSDNWVVDELGFTDLFNQLLPTMPWNSLMNRMMKELHDHGKTIEEIKQVLRRIPIHPRVIPAIKSAHALGCELRIVSDANTLFIETIIEHLGIGEFFSEINTNPGLVDEQGRLIVSPYHDFTKSSHGCSRCPPNMCKGLIIDRIQASLTKEGKTSKMIYLGDGAGDYCPSLGLKAEDYMMPRKNFPVWDLISQNPMLVKATVRDWTDGEDMERILMEIINEIMSSEEGEENDKMLSSENCKISVGIVHEPIQVPLNLVK", "length": 279 }, "evidence": [ { "id": "A0A5G2QBD6", "url": "https://omabrowser.org/oma/group/A0A5G2QBD6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VWF3-1", "protein_name": "Uncharacterized protein", "gene_name": "CG14122", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFAISRSLRLSRCLSPFGRGLSASSSPGPRTLVAIDFDRTIVEQDSYLAVSQLLPTSQRKELQDQIPKCGWLSFISQVLQRLHGEHKVNSASVGKRVRSLTAVPGMLRVMRQLARIPELELCIVSDANSFFIGEWLQAYAIECLFAGGVFTNPACVQASGELLVLPYQEQTDCDLCPSNMCKGSVMDELTCSGRYERLIYVGDSCNDLCAIKRLRQKDVACIRRGFELHGKMTAHGQELACSVLTWRDGHELEELLMPKIVA", "length": 262 }, "evidence": [ { "id": "A0A5G2QBD6", "url": "https://omabrowser.org/oma/group/A0A5G2QBD6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "pmid": "" }, { "name": "phosphatase activity", "id": "GO:0016791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016791", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "bone mineralization involved in bone maturation", "id": "GO:0035630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "pmid": "" }, { "name": "regulation of bone mineralization", "id": "GO:0030500", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030500", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular vesicle", "id": "GO:1903561", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903561", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10492", "name": "", "equation": "phosphocholine + H2O = choline + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10492", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10492" } ] }, { "id": "16089", "name": "", "equation": "phosphoethanolamine + H2O = ethanolamine + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16089", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16089" } ] }, { "id": "R-SSC-1483096", "name": "PETA is dephosphorylated to ETA by PHOSPHO1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1483096", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483096" } ] }, { "id": "R-SSC-1483159", "name": "PCho is dephosphorylated to Cho by PHOSPHO1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1483159", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483159" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 322, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBD6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "PIRSR031051-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR031051-3" } ], "binding_site_uniprot": 228, "amino_acid": "Ala", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 228, "end_pos": 228, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR031051-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR031051-3" } ], "binding_site_uniprot": 57, "amino_acid": "Pro", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 57, "end_pos": 57, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR031051-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR031051-3" } ], "binding_site_uniprot": 59, "amino_acid": "Ser", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 59, "end_pos": 59, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBE3-1", "uniprot_ac": "A0A5G2QBE3", "uniprot_id": "A0A5G2QBE3_PIG", "mass": { "chemical_mass": 33723.0, "monoisotopic_mass": 33723.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBE3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041442", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041442", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QBE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQFIQPNSKKNNQSMEKWTKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRDCGEKGTFLHYWGECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNDIMPFAATWMELENLILSEMSQKDKDKYHMISLISGI", "length": 283, "header": "tr|A0A5G2QBE3-1|A0A5G2QBE3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBE3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3/entry", "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQFIQPNSKKNNQSMEKWTKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRDCGEKGTFLHYWGECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNDIMPFAATWMELENLILSEMSQKDKDKYHMISLISGI", "length": 283, "header": "tr|A0A5G2QBE3-1|A0A5G2QBE3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBE3-1" }, "locus": { "chromosome": "14", "start_pos": 30379320, "end_pos": 30378720, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083476.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083476.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061374.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061374.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBE3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 283, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBE3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBE3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBF0-1", "uniprot_ac": "A0A5G2QBF0", "uniprot_id": "A0A5G2QBF0_PIG", "mass": { "chemical_mass": 11776.0, "monoisotopic_mass": 11776.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBF0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051506", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051506", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QBF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRSGIAGSNGSSMFSFLRHLHTVFHSGCTNLQSHQECTRVPFSPHPLQHFLFVDFFMMAILAGVRWYLRVVLICISLIMSDAEHLFMCFFGHPYVFFGELSV", "length": 103, "header": "tr|A0A5G2QBF0-1|A0A5G2QBF0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBF0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0/entry", "sequence": { "sequence": "MSRSGIAGSNGSSMFSFLRHLHTVFHSGCTNLQSHQECTRVPFSPHPLQHFLFVDFFMMAILAGVRWYLRVVLICISLIMSDAEHLFMCFFGHPYVFFGELSV", "length": 103, "header": "tr|A0A5G2QBF0-1|A0A5G2QBF0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBF0-1" }, "locus": { "chromosome": "17", "start_pos": 47286913, "end_pos": 47286605, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089930.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089930.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061798.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061798.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBF0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 103, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBF0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBF4-1", "uniprot_ac": "A0A5G2QBF4", "uniprot_id": "A0A5G2QBF4_PIG", "mass": { "chemical_mass": 12557.0, "monoisotopic_mass": 12557.0 }, "refseq": { "ac": "XP_003132130", "name": "COX assembly mitochondrial protein homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132130" }, "gene_names": [ { "name": "CMC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ] }, { "name": "CMC1", "type": "synonym", "evidence": [ { "id": "XP_003132130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132130" } ] } ], "protein_names": [ { "name": "COX assembly mitochondrial protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4/entry#names_and_taxonomy" } ] }, { "name": "COX assembly mitochondrial protein homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132130" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CMC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4", "locus": { "chromosome": "13", "start_pos": 14759891, "end_pos": 14682233, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041813", "url": "https://www.ensembl.org/id/ENSSSCG00000041813" } ] } } ], "crossref": [ { "id": "A0A5G2QBF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041813", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041813", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102164646", "url": "https://www.ncbi.nlm.nih.gov/gene/102164646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102164646", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QBF4", "url": "https://www.orthodb.org/?gene=A0A5G2QBF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22977:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22977:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132130", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132130", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHDPAEQHLRHVEKDVLIPKIMREKARERCSEQVQDFTKCCKDSGILMVVKCRKENSALKDCLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM", "length": 106, "header": "tr|A0A5G2QBF4-1|A0A5G2QBF4_PIG Isoform 1 of COX assembly mitochondrial protein OS=Sus scrofa OX=9823 GN=CMC1 PE=3 SV=1 CANONICAL=A0A5G2QBF4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4/entry", "sequence": { "sequence": "MAHDPAEQHLRHVEKDVLIPKIMREKARERCSEQVQDFTKCCKDSGILMVVKCRKENSALKDCLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM", "length": 106, "header": "tr|A0A5G2QBF4-1|A0A5G2QBF4_PIG Isoform 1 of COX assembly mitochondrial protein OS=Sus scrofa OX=9823 GN=CMC1 PE=3 SV=1 CANONICAL=A0A5G2QBF4-1" }, "locus": { "chromosome": "13", "start_pos": 14754547, "end_pos": 14682427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090033.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090033.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060796.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060796.1" } ] } }, { "isoform_ac": "A0A5G2QCS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS4/entry", "sequence": { "sequence": "MAHDPADFTKCCKDSGILMVVKCRKENSALKDCLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM", "length": 76, "header": "tr|A0A5G2QCS4-1|A0A5G2QCS4_PIG Computationally mapped isoform of COX assembly mitochondrial protein OS=Sus scrofa OX=9823 GN=CMC1 PE=3 SV=1 CANONICAL=A0A5G2QBF4-1" }, "locus": { "chromosome": "13", "start_pos": 14754547, "end_pos": 14682427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098018.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098018.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077625.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077625.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102164646", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164646", "resource": "KEGG Pathway" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex IV assembly", "id": "GO:0033617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033617", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein folding chaperone", "id": "GO:0044183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044183", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBF4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 106, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBF4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBF5-1", "uniprot_ac": "A0A5G2QBF5", "uniprot_id": "A0A5G2QBF5_PIG", "mass": { "chemical_mass": 77597.0, "monoisotopic_mass": 77597.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QBF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QBF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046465", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046465", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNWEKLKASLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALKKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWHNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLIEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEM", "length": 661, "header": "tr|A0A5G2QBF5-1|A0A5G2QBF5_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBF5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5/entry", "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNWEKLKASLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALKKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWHNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLIEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEM", "length": 661, "header": "tr|A0A5G2QBF5-1|A0A5G2QBF5_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBF5-1" }, "locus": { "chromosome": "5", "start_pos": 20460011, "end_pos": 20458029, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091527.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091527.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061803.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061803.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 528, "end_pos": 530, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBF5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 661, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBF5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBF5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QBF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBF5" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 178, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 471, "end_pos": 473 }, { "start_pos": 528, "end_pos": 530 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBH1-1", "uniprot_ac": "A0A5G2QBH1", "uniprot_id": "A0A5G2QBH1_PIG", "mass": { "chemical_mass": 24956.0, "monoisotopic_mass": 24956.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QBH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKPKRQLSEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMASKHMRKCSTSLIIREMQIKTTMRYHLTPVRMTIINKSTNNKCWRRLQRKGNPPALLMGMSTGTATMENSLEIP", "length": 215, "header": "tr|A0A5G2QBH1-1|A0A5G2QBH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKPKRQLSEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMASKHMRKCSTSLIIREMQIKTTMRYHLTPVRMTIINKSTNNKCWRRLQRKGNPPALLMGMSTGTATMENSLEIP", "length": 215, "header": "tr|A0A5G2QBH1-1|A0A5G2QBH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBH1-1" }, "locus": { "chromosome": "14", "start_pos": 95392050, "end_pos": 95391406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069600.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069600.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061823.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061823.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 215, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBH1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 177, "end_pos": 179 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBI3-1", "uniprot_ac": "A0A5G2QBI3", "uniprot_id": "A0A5G2QBI3_PIG", "mass": { "chemical_mass": 10059.0, "monoisotopic_mass": 10059.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBI3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QBI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPGVPGARSQVGTGPAPQCATSALDTFTFTRGEDEGTGPGRGSAPSGLRPNPRRTWAGPLFPGPRAGRRGVTEGARRASGRGGGLDPVFHLACSESSW", "length": 99, "header": "tr|A0A5G2QBI3-1|A0A5G2QBI3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBI3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3/entry", "sequence": { "sequence": "MAPGVPGARSQVGTGPAPQCATSALDTFTFTRGEDEGTGPGRGSAPSGLRPNPRRTWAGPLFPGPRAGRRGVTEGARRASGRGGGLDPVFHLACSESSW", "length": 99, "header": "tr|A0A5G2QBI3-1|A0A5G2QBI3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBI3-1" }, "locus": { "chromosome": "4", "start_pos": 109122075, "end_pos": 109121387, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061838.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061838.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 99, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBI3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBL0-1", "uniprot_ac": "A0A5G2QBL0", "uniprot_id": "A0A5G2QBL0_PIG", "mass": { "chemical_mass": 20876.0, "monoisotopic_mass": 20876.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBL0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QBL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVHVSFSRKVLSGYMPKSGIAGSYDSCIFSFLRYLRTVFHSCCTGVHSHQQCRRIPFSPHPLQPLLFVDFLLIVILTGVRWYLVVVLICISLIISDVEHFFMCLLAICICSLEKYLLRSLAHFSIGLLAFLLSSCKSCLYILEIKPVSVGSFDTYFLPFCKLSFFFLIFYGFLCCTKACQVD", "length": 183, "header": "tr|A0A5G2QBL0-1|A0A5G2QBL0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBL0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0/entry", "sequence": { "sequence": "MQVHVSFSRKVLSGYMPKSGIAGSYDSCIFSFLRYLRTVFHSCCTGVHSHQQCRRIPFSPHPLQPLLFVDFLLIVILTGVRWYLVVVLICISLIISDVEHFFMCLLAICICSLEKYLLRSLAHFSIGLLAFLLSSCKSCLYILEIKPVSVGSFDTYFLPFCKLSFFFLIFYGFLCCTKACQVD", "length": 183, "header": "tr|A0A5G2QBL0-1|A0A5G2QBL0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBL0-1" }, "locus": { "chromosome": "11", "start_pos": 17234794, "end_pos": 17234246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088294.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088294.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061873.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBL0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 183, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBL0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBL0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBM2-1", "uniprot_ac": "A0A5G2QBM2", "uniprot_id": "A0A5G2QBM2_PIG", "mass": { "chemical_mass": 13944.0, "monoisotopic_mass": 13944.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DUF1725 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QBM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047927", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047927", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QBM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHGILAPNREPPFFITWGLAGRLRKKNSPLCTFMFTVELFTIAKIRKQPKCPSTDDWINKMRHMYTVEYYSAIKKNEIMPFAATWMELEILTLSEVSQKEKNKYHMISLILESSIWDK", "length": 118, "header": "tr|A0A5G2QBM2-1|A0A5G2QBM2_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBM2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2/entry", "sequence": { "sequence": "MHGILAPNREPPFFITWGLAGRLRKKNSPLCTFMFTVELFTIAKIRKQPKCPSTDDWINKMRHMYTVEYYSAIKKNEIMPFAATWMELEILTLSEVSQKEKNKYHMISLILESSIWDK", "length": 118, "header": "tr|A0A5G2QBM2-1|A0A5G2QBM2_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBM2-1" }, "locus": { "chromosome": "13", "start_pos": 54737478, "end_pos": 54737014, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070668.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070668.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060888.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060888.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 118, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBM2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBN5-1", "uniprot_ac": "A0A5G2QBN5", "uniprot_id": "A0A5G2QBN5_PIG", "mass": { "chemical_mass": 55352.0, "monoisotopic_mass": 55352.0 }, "refseq": { "ac": "XP_003122474", "name": "LOW QUALITY PROTEIN: tesmin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122474" }, "gene_names": [ { "name": "TESMIN", "type": "recommended", "evidence": [ { "id": "A0A5G2QBN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ] }, { "name": "TESMIN", "type": "synonym", "evidence": [ { "id": "XP_003122474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122474" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: tesmin", "type": "synonym", "evidence": [ { "id": "XP_003122474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122474" } ] }, { "name": "Testis expressed metallothionein like protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TESMIN", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5", "locus": { "chromosome": "2", "start_pos": 4340968, "end_pos": 4297952, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012882", "url": "https://www.ensembl.org/id/ENSSSCG00000012882" } ] } } ], "crossref": [ { "id": "A0A5G2QBN5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBN5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520538", "url": "https://www.ncbi.nlm.nih.gov/gene/100520538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520538", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520538", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QBN5", "url": "https://www.orthodb.org/?gene=A0A5G2QBN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12446:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12446:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122474", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122474", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY65", "url": "https://www.uniprot.org/uniprotkb/F1RY65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY65-1", "url": "https://www.uniprot.org/uniprotkb/F1RY65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEAPLLGGVSGPEDEMVTDLFGAESQFVSENLPLKTAGAAKHEDDEFRVFKDAYLGAADPKEPLLPAFSPPLGGDGKNPGKVELRGDEAEAQDLLGEYPSLPELQPLEDAVLPAAPQPPAYNVHFLSSLLAPHRSPAVVPLGAWAREGAAQPAVRVIPVEIKEAGAAITSNNLEEATFQNPLAQESCSKFPSSQEAEDASVCSHKKDSNPMVICQLKGGTQMLCIDNSGTRELKALHLVPQYPDQNNYLQSDVPKPMTTLVGRFLPVPAKLNLITQLDNGALPSVVNGSAFPSGSTLPGPPKITLAGYCDCFASGDFCNNCNCNNCCNNLRHEIERFKAIKACLDRNPEAFQPKIGKGKLGDVKPRHNKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNYEESPERKTLMNLPNYMDIGGFEGGHHLSPTKLSGLPTFRKDRRSPSCISWEVVEATCACLLAQGEEAERERCSERLAEQRVLEEFGRCLSQILHTEFKSKGLNVE", "length": 510, "header": "tr|A0A5G2QBN5-1|A0A5G2QBN5_PIG Isoform 1 of Testis expressed metallothionein like protein OS=Sus scrofa OX=9823 GN=TESMIN PE=3 SV=1 CANONICAL=A0A5G2QBN5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5/entry", "sequence": { "sequence": "MDEAPLLGGVSGPEDEMVTDLFGAESQFVSENLPLKTAGAAKHEDDEFRVFKDAYLGAADPKEPLLPAFSPPLGGDGKNPGKVELRGDEAEAQDLLGEYPSLPELQPLEDAVLPAAPQPPAYNVHFLSSLLAPHRSPAVVPLGAWAREGAAQPAVRVIPVEIKEAGAAITSNNLEEATFQNPLAQESCSKFPSSQEAEDASVCSHKKDSNPMVICQLKGGTQMLCIDNSGTRELKALHLVPQYPDQNNYLQSDVPKPMTTLVGRFLPVPAKLNLITQLDNGALPSVVNGSAFPSGSTLPGPPKITLAGYCDCFASGDFCNNCNCNNCCNNLRHEIERFKAIKACLDRNPEAFQPKIGKGKLGDVKPRHNKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNYEESPERKTLMNLPNYMDIGGFEGGHHLSPTKLSGLPTFRKDRRSPSCISWEVVEATCACLLAQGEEAERERCSERLAEQRVLEEFGRCLSQILHTEFKSKGLNVE", "length": 510, "header": "tr|A0A5G2QBN5-1|A0A5G2QBN5_PIG Isoform 1 of Testis expressed metallothionein like protein OS=Sus scrofa OX=9823 GN=TESMIN PE=3 SV=1 CANONICAL=A0A5G2QBN5-1" }, "locus": { "chromosome": "2", "start_pos": 4340137, "end_pos": 4297952, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082675.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082675.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061454.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061454.1" } ] } }, { "isoform_ac": "F1RY65-1", "url": "https://www.uniprot.org/uniprotkb/F1RY65/entry", "sequence": { "sequence": "MDEAPLLGGVSGPEDEMVTDLFGAESQFVSENLPLKTAGAAKHEDDEFRVFKDAYLGAADPKEPLLPAFSPPLGGDGKNPGKVELRGDEAEAQDLLGEYPSLPELQPLEDAVLPAAPQPPAYNVHFLSSLLAPHRSPAVVPLGAWAREGAAQPAVRVIPVEIKEAGAAITSNNLEEATFQNPLAQESCSKFPSSQEAEDASVCSHKKDSNPMVICQLKGGTQMLCIDNSGTRELKALHLVPQYPDQNNYLQSA", "length": 253, "header": "tr|F1RY65-1|F1RY65_PIG Computationally mapped isoform of Testis expressed metallothionein like protein OS=Sus scrofa OX=9823 GN=TESMIN PE=4 SV=4 CANONICAL=A0A5G2QBN5-1" }, "locus": { "chromosome": "2", "start_pos": 4312135, "end_pos": 4297952, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014082.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014082.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013696.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013696.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520538", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520538", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "pmid": "" }, { "name": "male meiotic nuclear division", "id": "GO:0007140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007140", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBN5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 510, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBN5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBN5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QBN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBN5" }, { "id": "PS51634", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51634" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRC", "eco_id": "ECO_0000259", "start_pos": 294, "end_pos": 407, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 288, "end_pos": 290 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBT0-1", "uniprot_ac": "A0A5G2QBT0", "uniprot_id": "A0A5G2QBT0_PIG", "mass": { "chemical_mass": 33729.0, "monoisotopic_mass": 33729.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "60S ribosomal protein L7a", "type": "recommended", "evidence": [ { "id": "A0A5G2QBT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the ribosome.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0#function" }, { "database": "UniProtKB", "id": "RU367042", "url": "https://www.uniprot.org/uniprotkb/RU367042#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022842", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022842", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004037", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004037", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENRLVVAKGEGVGWTGNLGLVDKSSFSLRPLSKMPKGKKAKGKKVAPAPAVVKKQEAKKVVNLLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPTINQFTQALDRQTATQLLKLTHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYNEIRRHWGGNVLGPKSVARITKLEKAKAKELATKLG", "length": 300, "header": "tr|A0A5G2QBT0-1|A0A5G2QBT0_PIG Isoform 1 of 60S ribosomal protein L7a OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QBT0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0/entry", "sequence": { "sequence": "MENRLVVAKGEGVGWTGNLGLVDKSSFSLRPLSKMPKGKKAKGKKVAPAPAVVKKQEAKKVVNLLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPTINQFTQALDRQTATQLLKLTHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYNEIRRHWGGNVLGPKSVARITKLEKAKAKELATKLG", "length": 300, "header": "tr|A0A5G2QBT0-1|A0A5G2QBT0_PIG Isoform 1 of 60S ribosomal protein L7a OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QBT0-1" }, "locus": { "chromosome": "3", "start_pos": 64880270, "end_pos": 64878849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024482.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024482.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061968.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061968.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of LSU-rRNA", "id": "GO:0000470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000470", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 300, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QBT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT0" }, { "id": "PF01248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ribosomal protein eL8/eL30/eS12/Gadd45", "eco_id": "ECO_0000259", "start_pos": 165, "end_pos": 246, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBT5-1", "uniprot_ac": "A0A5G2QBT5", "uniprot_id": "A0A5G2QBT5_PIG", "mass": { "chemical_mass": 55663.0, "monoisotopic_mass": 55663.0 }, "refseq": {}, "gene_names": [ { "name": "ODR4", "type": "recommended", "evidence": [ { "id": "A0A5G2QBT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5" } ] } ], "protein_names": [ { "name": "Protein odr-4 homolog", "type": "recommended", "evidence": [ { "id": "A0A5G2QBT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in the trafficking of a subset of G-protein coupled receptors.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5#function" }, { "database": "UniProtKB", "id": "ARBA00003891", "url": "https://www.uniprot.org/uniprotkb/ARBA00003891#function" }, { "database": "UniProtKB", "id": "A0A5G2QYW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW7#function" }, { "database": "UniProtKB", "id": "A0A5G2R4V1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V1#function" }, { "database": "UniProtKB", "id": "F1S2Z9", "url": "https://www.uniprot.org/uniprotkb/F1S2Z9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ODR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5", "locus": { "chromosome": "9", "start_pos": 127619134, "end_pos": 127540531, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015577", "url": "https://www.ensembl.org/id/ENSSSCG00000015577" } ] } } ], "crossref": [ { "id": "A0A5G2QBT5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015577", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015577", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33966", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33966", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33966:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33966:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14778", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14778", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4V1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2Z9", "url": "https://www.uniprot.org/uniprotkb/F1S2Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2Z9-1", "url": "https://www.uniprot.org/uniprotkb/F1S2Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRTYIVEETVGQYLSNLNLQGKTFVSGLLIGQCSSQKDYVILATRTPAKEEQNESPKHPKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIVTTLEMGNEFQNTLRRLVFAVEKSLNKKRLWNFTEEEVSERVTLHICSSTKKILCRTYDIHDPKSSAKPADWKYQNGLSASWLSLECTVYINIHVPLSATSVSYTLEKNTKNGLARWAKQIENGVYLINGQVKDEDCELLEGQKKSSRGNTQATNHSFDVRVLTQLVLNSDHRSTATVQICSGSVNLKGAVKCRAYVHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLVLNEIPEKKDSEKEFHILPHRVFVPIPGSAVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEEVNTACVSSSVNTEASLDNTDDEQPKQPIKTTVVLKIQQNIGVIAAFAVAALAAGKRRLKKISDLLQRMEDQLDQTNVVRLPDTGKVPFEGHDHCIRCWSCETY", "length": 495, "header": "tr|A0A5G2QBT5-1|A0A5G2QBT5_PIG Isoform 1 of Protein odr-4 homolog OS=Sus scrofa OX=9823 GN=ODR4 PE=1 SV=1 CANONICAL=A0A5G2QBT5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5/entry", "sequence": { "sequence": "MGRTYIVEETVGQYLSNLNLQGKTFVSGLLIGQCSSQKDYVILATRTPAKEEQNESPKHPKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIVTTLEMGNEFQNTLRRLVFAVEKSLNKKRLWNFTEEEVSERVTLHICSSTKKILCRTYDIHDPKSSAKPADWKYQNGLSASWLSLECTVYINIHVPLSATSVSYTLEKNTKNGLARWAKQIENGVYLINGQVKDEDCELLEGQKKSSRGNTQATNHSFDVRVLTQLVLNSDHRSTATVQICSGSVNLKGAVKCRAYVHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLVLNEIPEKKDSEKEFHILPHRVFVPIPGSAVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEEVNTACVSSSVNTEASLDNTDDEQPKQPIKTTVVLKIQQNIGVIAAFAVAALAAGKRRLKKISDLLQRMEDQLDQTNVVRLPDTGKVPFEGHDHCIRCWSCETY", "length": 495, "header": "tr|A0A5G2QBT5-1|A0A5G2QBT5_PIG Isoform 1 of Protein odr-4 homolog OS=Sus scrofa OX=9823 GN=ODR4 PE=1 SV=1 CANONICAL=A0A5G2QBT5-1" }, "locus": { "chromosome": "9", "start_pos": 127590708, "end_pos": 127542717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079452.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079452.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061509.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061509.2" } ] } }, { "isoform_ac": "A0A5G2QYW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW7/entry", "sequence": { "sequence": "MGRTYIVEETVGQYLSNLNLQGKTFVSGLLIGQCSSQKDYVILATRTPAKEEQNESPKHPKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIVTTLEMGNEFQNTLRRLVFAVEKSLNKKRLWNFTEEEVSERVTLHICSSTKKYLLFRCLGYKSSAKPADWKYQNGLSASWLSLECTVYINIHVPLSATSVSYTLEKNTKNGLARWAKQIENGVYLINGQVKDEDCELLEGQVLNSDHRSTATVQICSGSVNLKGAVKCRAYVHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLVLNEIPEKKVMNSEKEFHILPHRVFVPIPGSAVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEEVNTACVSSSVNTEASLDNTDDEQPKQPIKTTVVLKIQQNIGIIFLLKH", "length": 417, "header": "tr|A0A5G2QYW7-1|A0A5G2QYW7_PIG Computationally mapped isoform of Protein odr-4 homolog OS=Sus scrofa OX=9823 GN=ODR4 PE=1 SV=2 CANONICAL=A0A5G2QBT5-1" }, "locus": { "chromosome": "9", "start_pos": 127577669, "end_pos": 127542717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078869.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078869.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070101.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070101.2" } ] } }, { "isoform_ac": "A0A5G2R4V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V1/entry", "sequence": { "sequence": "MGRTYIVEETVGQYLSNLNLQGKTFVSGLLIGQCSSQKDYVILATRTPAKEEQNESPKHPKAKLDNLDEEWATEHANQLVFAVEKSLNKKRLWNFTEEEVSERVTLHICSSTKKYLLFRCLGYKSSAKPADWKYQNGLSASWLSLECTVYINIHVPLSATSVSYTLEKNTKNGLARWAKQIENGVYLINGQVKDEDCELLEGQKKSSRGNTQATNHSFDVRVLTQLVLNSDHRSTATVQICSGSVNLKGAVKCRAYVHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLVLNEIPEKKVMNSEKEFHILPHRVFVPIPGSAVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEEVNTACVSSSVNTEASLDNTDDEQPKQPIKTTVVLKIQQNIGIIFLLKH", "length": 408, "header": "tr|A0A5G2R4V1-1|A0A5G2R4V1_PIG Computationally mapped isoform of Protein odr-4 homolog OS=Sus scrofa OX=9823 GN=ODR4 PE=1 SV=2 CANONICAL=A0A5G2QBT5-1" }, "locus": { "chromosome": "9", "start_pos": 127577669, "end_pos": 127542717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090023.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090023.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065594.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065594.2" } ] } }, { "isoform_ac": "F1S2Z9-1", "url": "https://www.uniprot.org/uniprotkb/F1S2Z9/entry", "sequence": { "sequence": "MGRTYIVEETVGQYLSNLNLQGKTFVSGLLIGQCSSQKDYVILATRTPAKEEQNESPKHPKAKLDNLDEEWATEHANQVSRMLPGGLLVLGVFIVTTLEMGNEFQNTLRRLVFAVEKSLNKKRLWNFTEEEVSERVTLHICSSTKKYLLFRCLGYKSSAKPADWKYQNGLSASWLSLECTVYINIHVPLSATSVSYTLEKNTKNGLARWAKQIENGVYLINGQVKDEDCELLEGQKKSSRGNTQATNHSFDVRVLTQLVLNSDHRSTATVQICSGSVNLKGAVKCRAYVHSNKPKVKDAVQAMKRDILNTVADRCEILFEDLVLNEIPEKKVMNSEKEFHILPHRVFVPIPGSAVMLCDYKFGDESAEEIRDHFIEMLDHMIQIEDLEIAEEVNTACVSSSVNTEASLDNTDDEQPKQPIKTTVVLKIQQNIGIIFLLKH", "length": 440, "header": "tr|F1S2Z9-1|F1S2Z9_PIG Computationally mapped isoform of Protein odr-4 homolog OS=Sus scrofa OX=9823 GN=ODR4 PE=1 SV=2 CANONICAL=A0A5G2QBT5-1" }, "locus": { "chromosome": "9", "start_pos": 127577669, "end_pos": 127542717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016970.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016970.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016516.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016516.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBU3-1", "uniprot_ac": "A0A5G2QBU3", "uniprot_id": "A0A5G2QBU3_PIG", "mass": { "chemical_mass": 1579.0, "monoisotopic_mass": 1579.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPYLLISTQIRML", "length": 13, "header": "tr|A0A5G2QBU3-1|A0A5G2QBU3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3/entry", "sequence": { "sequence": "MPYLLISTQIRML", "length": 13, "header": "tr|A0A5G2QBU3-1|A0A5G2QBU3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBU3-1" }, "locus": { "chromosome": "1", "start_pos": 130563488, "end_pos": 130559946, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096862.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096862.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080915.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080915.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBW0-1", "uniprot_ac": "A0A5G2QBW0", "uniprot_id": "A0A5G2QBW0_PIG", "mass": { "chemical_mass": 17148.0, "monoisotopic_mass": 17148.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein uL15/eL18 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QBW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBW0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBW0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046784", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046784", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10934:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10934:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17135", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17135", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHINRPPVSLSWMTWKVKLPSQKGKSARVIGTVTAHVCPGGTRTEVRAWRWSGCAWSHILKPGGKSLPFNQRAPDSPSGYGTILLSGPYKGREVYRQDPRPRHGHTKAYVCPKGQQFERTGGQPPAKATKTNPRSCLLLKRFWMQRKEVMR", "length": 152, "header": "tr|A0A5G2QBW0-1|A0A5G2QBW0_PIG Isoform 1 of Large ribosomal subunit protein uL15/eL18 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBW0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0/entry", "sequence": { "sequence": "MSHINRPPVSLSWMTWKVKLPSQKGKSARVIGTVTAHVCPGGTRTEVRAWRWSGCAWSHILKPGGKSLPFNQRAPDSPSGYGTILLSGPYKGREVYRQDPRPRHGHTKAYVCPKGQQFERTGGQPPAKATKTNPRSCLLLKRFWMQRKEVMR", "length": 152, "header": "tr|A0A5G2QBW0-1|A0A5G2QBW0_PIG Isoform 1 of Large ribosomal subunit protein uL15/eL18 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QBW0-1" }, "locus": { "chromosome": "7", "start_pos": 9601250, "end_pos": 9600795, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086330.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086330.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062008.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062008.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBW0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 152, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBW0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBW0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QBW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBW0" }, { "id": "PF17135", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17135" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL15/eL18", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 131, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBX3-1", "uniprot_ac": "A0A5G2QBX3", "uniprot_id": "A0A5G2QBX3_PIG", "mass": { "chemical_mass": 54467.0, "monoisotopic_mass": 54467.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QBX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QBX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 459, "header": "tr|A0A5G2QBX3-1|A0A5G2QBX3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBX3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3/entry", "sequence": { "sequence": "MAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 459, "header": "tr|A0A5G2QBX3-1|A0A5G2QBX3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QBX3-1" }, "locus": { "chromosome": "15", "start_pos": 123848572, "end_pos": 123847196, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076102.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076102.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061554.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061554.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 459, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBX3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 252, "end_pos": 254 }, { "start_pos": 309, "end_pos": 311 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC22-1", "uniprot_ac": "A0A5G2QC22", "uniprot_id": "A0A5G2QC22_PIG", "mass": { "chemical_mass": 18351.0, "monoisotopic_mass": 18351.0 }, "refseq": { "ac": "XP_020930084", "name": "golgin subfamily A member 7B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930084" }, "gene_names": [ { "name": "GOLGA7B", "type": "recommended", "evidence": [ { "id": "A0A5G2QC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ] }, { "name": "GOLGA7B", "type": "synonym", "evidence": [ { "id": "XP_020930084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930084" } ] } ], "protein_names": [ { "name": "Golgin A7 family member B", "type": "synonym", "evidence": [ { "id": "A0A5G2QC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22/entry#names_and_taxonomy" } ] }, { "name": "golgin subfamily A member 7B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020930084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930084" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GOLGA7B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22", "locus": { "chromosome": "14", "start_pos": 109225153, "end_pos": 109210866, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040359", "url": "https://www.ensembl.org/id/ENSSSCG00000040359" } ] } } ], "crossref": [ { "id": "A0A5G2QC22", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040359", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040359", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102162220", "url": "https://www.ncbi.nlm.nih.gov/gene/102162220", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102162220", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162220", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIYICTE", "url": "https://omabrowser.org/oma/group/FIYICTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QC22", "url": "https://www.orthodb.org/?gene=A0A5G2QC22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13254:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13254:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930084", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC22-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEVHNLQELRRSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNSFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKIFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSGGGGGAGGR", "length": 167, "header": "tr|A0A5G2QC22-1|A0A5G2QC22_PIG Isoform 1 of Golgin A7 family member B OS=Sus scrofa OX=9823 GN=GOLGA7B PE=3 SV=1 CANONICAL=A0A5G2QC22-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC22-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22/entry", "sequence": { "sequence": "MATEVHNLQELRRSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNSFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKIFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSGGGGGAGGR", "length": 167, "header": "tr|A0A5G2QC22-1|A0A5G2QC22_PIG Isoform 1 of Golgin A7 family member B OS=Sus scrofa OX=9823 GN=GOLGA7B PE=3 SV=1 CANONICAL=A0A5G2QC22-1" }, "locus": { "chromosome": "14", "start_pos": 109223977, "end_pos": 109211160, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088441.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088441.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062084.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062084.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162220", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162220", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KH14-1", "protein_name": "Ras modification protein ERF4", "gene_name": "Dmel\\CG5447", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAELEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSETHYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGRTXLPLSHSANEFFM", "length": 164 }, "evidence": [ { "id": "A0A5G2QC22", "url": "https://omabrowser.org/oma/group/A0A5G2QC22/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1M362-1", "protein_name": "Golgin A7 family, member B", "gene_name": "Golga7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATEVHNLQELRRSASLATKVFIQRDYSDGTVCQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKVFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSAGGGGAGAR", "length": 167 }, "evidence": [ { "id": "A0A5G2QC22", "url": "https://omabrowser.org/oma/group/A0A5G2QC22/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D428-1", "protein_name": "Golgin subfamily A member 7B", "gene_name": "GOLGA7B", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEVHNLQELRRSASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKVFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSAGGGGAGAR", "length": 167 }, "evidence": [ { "id": "A0A5G2QC22", "url": "https://omabrowser.org/oma/group/A0A5G2QC22/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "pmid": "" }, { "name": "palmitoyltransferase complex", "id": "GO:0002178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein targeting to membrane", "id": "GO:0006612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006612", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 167, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC22" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QC22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC22" }, { "id": "PF10256", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10256" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgin subfamily A member 7/ERF4", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 133, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC34-1", "uniprot_ac": "A0A5G2QC34", "uniprot_id": "A0A5G2QC34_PIG", "mass": { "chemical_mass": 29677.0, "monoisotopic_mass": 29677.0 }, "refseq": {}, "gene_names": [ { "name": "PERCC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QC34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34" } ] } ], "protein_names": [ { "name": "Proline and glutamate rich with coiled coil 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QC34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PERCC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34", "locus": { "chromosome": "3", "start_pos": 40430363, "end_pos": 40431205, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000048138", "url": "https://www.ensembl.org/id/ENSSSCG00000048138" } ] } } ], "crossref": [ { "id": "A0A5G2QC34", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC34", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048138", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048138", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR053819", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053819", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF15238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QC34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGVIRPLSDFRLPLASHGPFLPSDPVPPDTSEEEDDEGEEEEDDEGEEEEDEELEAEGPEGHSPASRSSGWATAAPEAAPLDPSSTEMPLQLLRFSELISGDIQRYFGRKGRGQDPDGCDIYADGHLASSSARELSCADPVHAAQGEPPDHDEATEPGVCSPGGPEGQVCRLGLGGSRAQPLGPLAELFDYGLRQYSGPRAVAGRRLTLERKYGHITPMTQRKLPPSFWKEPVPSPLGLLHPGTPDFSDLLASWSAEAGPELPGGGTQALDGVQLAEA", "length": 280, "header": "tr|A0A5G2QC34-1|A0A5G2QC34_PIG Isoform 1 of Proline and glutamate rich with coiled coil 1 OS=Sus scrofa OX=9823 GN=PERCC1 PE=4 SV=1 CANONICAL=A0A5G2QC34-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34/entry", "sequence": { "sequence": "MAAGVIRPLSDFRLPLASHGPFLPSDPVPPDTSEEEDDEGEEEEDDEGEEEEDEELEAEGPEGHSPASRSSGWATAAPEAAPLDPSSTEMPLQLLRFSELISGDIQRYFGRKGRGQDPDGCDIYADGHLASSSARELSCADPVHAAQGEPPDHDEATEPGVCSPGGPEGQVCRLGLGGSRAQPLGPLAELFDYGLRQYSGPRAVAGRRLTLERKYGHITPMTQRKLPPSFWKEPVPSPLGLLHPGTPDFSDLLASWSAEAGPELPGGGTQALDGVQLAEA", "length": 280, "header": "tr|A0A5G2QC34-1|A0A5G2QC34_PIG Isoform 1 of Proline and glutamate rich with coiled coil 1 OS=Sus scrofa OX=9823 GN=PERCC1 PE=4 SV=1 CANONICAL=A0A5G2QC34-1" }, "locus": { "chromosome": "3", "start_pos": 40431205, "end_pos": 40430366, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071719.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071719.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061629.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061629.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "digestive tract morphogenesis", "id": "GO:0048546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048546", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34" } ], "pmid": "" }, { "name": "enteroendocrine cell differentiation", "id": "GO:0035883", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035883", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC34-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 280, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC34-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC34" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC49-1", "uniprot_ac": "A0A5G2QC49", "uniprot_id": "A0A5G2QC49_PIG", "mass": { "chemical_mass": 19396.0, "monoisotopic_mass": 19396.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QC49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49", "locus": {} } ], "crossref": [ { "id": "A0A5G2QC49", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051311", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051311", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QC49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTWSLPEGSLISGFHSEENPARPSPPPSSHCFPHIALRGTWTGSPGRWCCWPCRRTPQRPCTGCSSGSVTTRGRGCAPPCARPGSAGREGPSEPEAGRGRETRPPLSDPSLTPLSSLCQHLSLALGTNWWEAPESTVGTWVYPRQKVGLRLVKWPGLCARTGLGRTPKALKVTWVGTSKM", "length": 180, "header": "tr|A0A5G2QC49-1|A0A5G2QC49_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC49-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49/entry", "sequence": { "sequence": "MTWSLPEGSLISGFHSEENPARPSPPPSSHCFPHIALRGTWTGSPGRWCCWPCRRTPQRPCTGCSSGSVTTRGRGCAPPCARPGSAGREGPSEPEAGRGRETRPPLSDPSLTPLSSLCQHLSLALGTNWWEAPESTVGTWVYPRQKVGLRLVKWPGLCARTGLGRTPKALKVTWVGTSKM", "length": 180, "header": "tr|A0A5G2QC49-1|A0A5G2QC49_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC49-1" }, "locus": { "chromosome": "9", "start_pos": 40942641, "end_pos": 40914848, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088642.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088642.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061094.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061094.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 180, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC49" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC56-1", "uniprot_ac": "A0A5G2QC56", "uniprot_id": "A0A5G2QC56_PIG", "mass": { "chemical_mass": 14969.0, "monoisotopic_mass": 14969.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QC56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56", "locus": {} } ], "crossref": [ { "id": "A0A5G2QC56", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQNTITEIKNSLEAANSRIQEAEERISEVEDRLEEIMDGEQKREKRLKTNEESLRELWDNVKPTNIRIIGVPEGGEREKETEKIFQEIIAENFPHMGKEPLTQIQEAQRVPYKINPRRNTPRQTDQN", "length": 127, "header": "tr|A0A5G2QC56-1|A0A5G2QC56_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC56-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56/entry", "sequence": { "sequence": "MQNTITEIKNSLEAANSRIQEAEERISEVEDRLEEIMDGEQKREKRLKTNEESLRELWDNVKPTNIRIIGVPEGGEREKETEKIFQEIIAENFPHMGKEPLTQIQEAQRVPYKINPRRNTPRQTDQN", "length": 127, "header": "tr|A0A5G2QC56-1|A0A5G2QC56_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC56-1" }, "locus": { "chromosome": "5", "start_pos": 88988849, "end_pos": 88988469, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074514.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074514.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061104.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061104.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC56-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 127, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC56-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC56" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QC56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 123, "start_aa": "Asn", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QC56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC56" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 59, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC63-1", "uniprot_ac": "A0A5G2QC63", "uniprot_id": "A0A5G2QC63_PIG", "mass": { "chemical_mass": 14445.0, "monoisotopic_mass": 14445.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QC63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63", "locus": {} } ], "crossref": [ { "id": "A0A5G2QC63", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC63", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046344", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046344", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF04979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QC63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VMGKKKKKTEDGSPHRLARTHQGDPENKGSTASSVAASVQQAGGAVAEVQRKKSQKWDEKNILATYRPEYRDYDFMKTNEPSTPQLRVKKKTFHRRCNCQIRVLLRSLTASCTAQASSTEILISSIVRP", "length": 129, "header": "tr|A0A5G2QC63-1|A0A5G2QC63_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QC63-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63/entry", "sequence": { "sequence": "VMGKKKKKTEDGSPHRLARTHQGDPENKGSTASSVAASVQQAGGAVAEVQRKKSQKWDEKNILATYRPEYRDYDFMKTNEPSTPQLRVKKKTFHRRCNCQIRVLLRSLTASCTAQASSTEILISSIVRP", "length": 129, "header": "tr|A0A5G2QC63-1|A0A5G2QC63_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QC63-1" }, "locus": { "chromosome": "X", "start_pos": 38293848, "end_pos": 38292872, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088540.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088540.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062139.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062139.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC63-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC63-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC63" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC67-1", "uniprot_ac": "A0A5G2QC67", "uniprot_id": "A0A5G2QC67_PIG", "mass": { "chemical_mass": 49285.0, "monoisotopic_mass": 49285.0 }, "refseq": {}, "gene_names": [ { "name": "TCP11", "type": "recommended", "evidence": [ { "id": "A0A5G2QC67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ] } ], "protein_names": [ { "name": "T-complex 11", "type": "synonym", "evidence": [ { "id": "A0A5G2QC67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCP11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67", "locus": { "chromosome": "7", "start_pos": 31007474, "end_pos": 31114734, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001535", "url": "https://www.ensembl.org/id/ENSSSCG00000001535" } ] } } ], "crossref": [ { "id": "A0A5G2QC67", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC67", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001535", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001535", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154604", "url": "https://www.ncbi.nlm.nih.gov/gene/100154604", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154604", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154604", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHERATF", "url": "https://omabrowser.org/oma/group/QHERATF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZ12", "url": "https://www.orthodb.org/?gene=F1RZ12", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12832", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12832", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12832:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12832:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZ12", "url": "https://www.uniprot.org/uniprotkb/F1RZ12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZ12-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRDFHTEEKVLPPSSLEGKVKETMHNAFWDHLKEQLLATPPDFSCALELLKEIKEILLSLLLPRQNRLRSEIEEALDVNLLGRAAEQGALNVPHVSKYILNTMTLLCAPVRDEAVQKLETISDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPQLQEHNIQCERARFQELLNKQPSLLDHTTRWLTQAATDLATPPPPCPDTPDSSSATCLPAGEAAISPEPLSPKMVLSQGFLNLLLWDGEDEAFPETLRTDRARLQELEAQLHRLTVLASVLLVANSFSGSVLFGSPQFVDKLKRTTKVLLEEFGSRPEEEAMLTVSEQVTQEIHQSLKNMGLAPLSSDNTASLIGQLQNIAKKENCVRSVIDQRIHLFLKCCLILGVQRSLLDLPGGLTLIEAELAELGQKFANLTQHNQQVFGPYYTEILKTLIPPAQVLETEMESL", "length": 441, "header": "tr|A0A5G2QC67-1|A0A5G2QC67_PIG Isoform 1 of T-complex 11 OS=Sus scrofa OX=9823 GN=TCP11 PE=3 SV=1 CANONICAL=A0A5G2QC67-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67/entry", "sequence": { "sequence": "MNRDFHTEEKVLPPSSLEGKVKETMHNAFWDHLKEQLLATPPDFSCALELLKEIKEILLSLLLPRQNRLRSEIEEALDVNLLGRAAEQGALNVPHVSKYILNTMTLLCAPVRDEAVQKLETISDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPQLQEHNIQCERARFQELLNKQPSLLDHTTRWLTQAATDLATPPPPCPDTPDSSSATCLPAGEAAISPEPLSPKMVLSQGFLNLLLWDGEDEAFPETLRTDRARLQELEAQLHRLTVLASVLLVANSFSGSVLFGSPQFVDKLKRTTKVLLEEFGSRPEEEAMLTVSEQVTQEIHQSLKNMGLAPLSSDNTASLIGQLQNIAKKENCVRSVIDQRIHLFLKCCLILGVQRSLLDLPGGLTLIEAELAELGQKFANLTQHNQQVFGPYYTEILKTLIPPAQVLETEMESL", "length": 441, "header": "tr|A0A5G2QC67-1|A0A5G2QC67_PIG Isoform 1 of T-complex 11 OS=Sus scrofa OX=9823 GN=TCP11 PE=3 SV=1 CANONICAL=A0A5G2QC67-1" }, "locus": { "chromosome": "7", "start_pos": 31030101, "end_pos": 31009000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085086.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085086.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061674.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061674.1" } ] } }, { "isoform_ac": "F1RZ12-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ12/entry", "sequence": { "sequence": "MPDVEEKVPLKDPGNAESGPCKPETSGRTPDDRSSPKDHPSRLIDKVNDVSQLSEKIGMNRDFHTEEKVLPPSSLEGKVKETMHNAFWDHLKEQLLATPPDFSCALELLKEIKEILLSLLLPRQNRLRSEIEEALDVNLLGRAAEQGALNVPHVSKYILNTMTLLCAPVRDEAVQKLETISDPVRLLRGIFQVLGLMKMDMVNYTIQSLQPQLQEHNIQCERARFQELLNKQPSLLDHTTRWLTQAATDLATPPPPCPDTPDSSSATCLPAGEAAISPEPLSPKMVLSQGFLNLLLWDGEDEAFPETLRTDRARLQELEAQLHRLTVLASVLLVANSFSGSVLFGSPQFVDKLKRTTKVLLEEFGSRPEEEAMLTVSEQVTQEIHQSLKNMGLAPLSSDNTASLIGQLQNIAKKENCVRSVIDQRIHLFLKCCLILGVQRSLLDLPGGLTLIEAELAELGQKFANLTQHNQQVFGPYYTEILKTLIPPAQVLETEMESL", "length": 499, "header": "tr|F1RZ12-1|F1RZ12_PIG Computationally mapped isoform of T-complex 11 OS=Sus scrofa OX=9823 GN=TCP11 PE=3 SV=3 CANONICAL=A0A5G2QC67-1" }, "locus": { "chromosome": "7", "start_pos": 31033337, "end_pos": 31009000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001710.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001710.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001666.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001666.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154604", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154604", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q01755-1", "protein_name": "T-complex protein 11", "gene_name": "Tcp11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPDVKERAARKEPGAAESASRESRGGNTRESASSARGTDRVGSTVARARPPSPQGPRRGAVKTAPRGPVGHGGLRTGPTSRCPQPSARAKLPSVTRGAPLPPSPGKGHLGGTPSSHRLGMTERVHDASKLDCQLEERSLSSSSLKGKVKDTMPSDFWEHLNEQLSAVPPDFSCALELLKEIKEILLSLLLPRQSRLKNEIEEALDMEFLQQQADRGDLNVSYLSKYILNMMVLLCAPIRDEAVQRLENISDPVRLLRGIFQVLGQMKMDMVNYTIQSLQPQLQEHSVQFERAQFQERLNKEPRLLNHTTKWLTQAATQLIAPSASSSDLQDCSSSAGPSPSDVAVPEPLSPAMVLSQGFLNLLTWDPENEEFPETLVADRPRLQELESQQSQLTILASVLLVASSFSDSGLFSSPQFVDKLKQITKSLVEDFNSRPEEVMQSVSEQVVEEVHQGLESMGLAALSSENTASLVGQLQNIAKKENCVRSVIDQRIHLFLKCCFVLGVQRSLLDLPGGLTLIEAELAELGQKFVSLTHHNQQVFAPYYTEILKTLISPAQTLATKGGSL", "length": 566 }, "evidence": [ { "id": "A0A5G2QC67", "url": "https://omabrowser.org/oma/group/A0A5G2QC67/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XI00-1", "protein_name": "T-complex protein 11 homolog", "gene_name": "Tcp11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPDLKERAARKEPGAAESASRESRGGNTRESASSAQGHRSRRFNRRSSTAALTPGSAQGRGVQTAPRAPVGHGGLRTGLTSRCPQPSARAKLPSVTRGAPLPPSPGKGHFGATPISHRLGLTERVHDASKLDCHLEDRKSASSLESRGKEVMPSDFWDHLKEQLSAVPPDFSCALELLKEIKEILLSLLLPRQSRLRNEIEEALDMEFLHQQADRGDLNVSYLSKYILNMMVLLCAPVRDEAVQRLENISDPVRLLRGIFQVLGQMKMDMVNYTIQSLQPQLQEHSIQFERAQFQERLNKDPSLLNHTTKWLTQAATQLIAPSGSCYDIQDPSSSSGPSPSDIAIPEPLSPAMVLSQGFLNLLTWDPENEEFPETLLADRSRLQELESQQNQLTILASVLLVASSFSGSVLFGSPQFVDRLKRITKSLVEDFNSRPEEVMQTVSDQVTEEIHQSLKNMGLSPLSSENTDSLIGQLQNIAKKENCVRSVIDQRIHLFLKCCFVLGVQRSLLDLPGGLSLIEAELAELGQKFVSLTHHNQQVFAPYYTEILKTLINPVQTLTTKVGSL", "length": 566 }, "evidence": [ { "id": "A0A5G2QC67", "url": "https://omabrowser.org/oma/group/A0A5G2QC67/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8WWU5-1", "protein_name": "T-complex protein 11 homolog", "gene_name": "TCP11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPPFLSVTGLTETVNEVSKLSNKIGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALETKVESV", "length": 503 }, "evidence": [ { "id": "A0A5G2QC67", "url": "https://omabrowser.org/oma/group/A0A5G2QC67/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of sperm capacitation", "id": "GO:1902490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902490", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "pmid": "" }, { "name": "germ cell development", "id": "GO:0007281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007281", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC67-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 441, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC67-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC67" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 407, "end_pos": 409 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC72-1", "uniprot_ac": "A0A5G2QC72", "uniprot_id": "A0A5G2QC72_PIG", "mass": { "chemical_mass": 45522.0, "monoisotopic_mass": 45522.0 }, "refseq": {}, "gene_names": [ { "name": "NUDCD3", "type": "recommended", "evidence": [ { "id": "A0A5G2QC72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ] } ], "protein_names": [ { "name": "NudC domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QC72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUDCD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72", "locus": { "chromosome": "18", "start_pos": 50830332, "end_pos": 50759221, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016747", "url": "https://www.ensembl.org/id/ENSSSCG00000016747" } ] } } ], "crossref": [ { "id": "A0A5G2QC72", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC72", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016747", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016747", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06495", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06495", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR007052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12356", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12356", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12356:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12356:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04969", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04969", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14050", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14050", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BST6", "url": "https://www.uniprot.org/uniprotkb/A0A287BST6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BST6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BST6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC72-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRRKELEERIRRKEEEEAKAAAAATAEQEPVPAPVQEVEVDSTAASGAPQEPPGPQGPAQEVGPGSGQAEPAGADAGAAEVPREPLPLPNARCRRLFCRVMWTRQNATQTPTRSACEDWLRRQEQFQRNPDSYNGAVRENYTWSQDYTDLELKVPVPKHVVKGKQVSVALSSSSIRVAVLEESGERVLMEGTFTHRINTESSLWSLEPGKCVLVSLNKVGEYWWSAILEGEERIDIDKINKERSMATVDEEEHAVLDRLTFDYHQKLQGKPQSHELVRAPTLRRSSWALTWAALAWSPPRPGLWFHRWTGSPGGRAARGLAAGSGPCRS", "length": 407, "header": "tr|A0A5G2QC72-1|A0A5G2QC72_PIG Isoform 1 of NudC domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NUDCD3 PE=1 SV=1 CANONICAL=A0A5G2QC72-1" }, "isoforms": [ { "isoform_ac": "A0A287BST6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BST6/entry", "sequence": { "sequence": "MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRRKELEERIRRKEEEEAKAAAAATAEQEPVPAPVQEVEVDSTAASGAPQEPPGPQGPAQEVGPGSGQAEPAGADAGAAEVPREPLPLPKRQEQFQRNPDSYNGAVRENYTWSQDYTDLELKVPVPKHVVKGKQVSVALSSSSIRVAVLEESGERVLMEGTFTHRINTESSLWSLEPGKCVLVSLNKVGEYWWSAILEGEERIDIDKINKERSMATVDEEEHAVLDRLTFDYHQKLQGKPQSHELVRAPTLRRSSWALTWAALAWSPPRPGLWFHRWTGSPGGRAARGLAAGSGPCRS", "length": 376, "header": "tr|A0A287BST6-1|A0A287BST6_PIG Computationally mapped isoform of NudC domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NUDCD3 PE=1 SV=1 CANONICAL=A0A5G2QC72-1" }, "locus": { "chromosome": "18", "start_pos": 50825470, "end_pos": 50759272, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054803.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054803.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059585.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059585.2" } ] } }, { "isoform_ac": "A0A5G2QC72-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72/entry", "sequence": { "sequence": "MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPSDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRRKELEERIRRKEEEEAKAAAAATAEQEPVPAPVQEVEVDSTAASGAPQEPPGPQGPAQEVGPGSGQAEPAGADAGAAEVPREPLPLPNARCRRLFCRVMWTRQNATQTPTRSACEDWLRRQEQFQRNPDSYNGAVRENYTWSQDYTDLELKVPVPKHVVKGKQVSVALSSSSIRVAVLEESGERVLMEGTFTHRINTESSLWSLEPGKCVLVSLNKVGEYWWSAILEGEERIDIDKINKERSMATVDEEEHAVLDRLTFDYHQKLQGKPQSHELVRAPTLRRSSWALTWAALAWSPPRPGLWFHRWTGSPGGRAARGLAAGSGPCRS", "length": 407, "header": "tr|A0A5G2QC72-1|A0A5G2QC72_PIG Isoform 1 of NudC domain-containing protein 3 OS=Sus scrofa OX=9823 GN=NUDCD3 PE=1 SV=1 CANONICAL=A0A5G2QC72-1" }, "locus": { "chromosome": "18", "start_pos": 50825470, "end_pos": 50759272, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081272.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081272.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062149.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062149.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein localization to pericentriolar material", "id": "GO:1905793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" }, { "name": "cytoplasmic dynein complex", "id": "GO:0005868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005868", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC72-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 407, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC72-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC72" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QC72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC72" }, { "id": "PS51203", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51203" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CS", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 306, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 218, "end_pos": 220 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC82-1", "uniprot_ac": "A0A5G2QC82", "uniprot_id": "A0A5G2QC82_PIG", "mass": { "chemical_mass": 85479.0, "monoisotopic_mass": 85479.0 }, "refseq": {}, "gene_names": [ { "name": "PIGG", "type": "recommended", "evidence": [ { "id": "A0A5G2QC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ] } ], "protein_names": [ { "name": "Phosphatidylinositol glycan anchor biosynthesis class G", "type": "synonym", "evidence": [ { "id": "A0A5G2QC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIGG", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82", "locus": { "chromosome": "8", "start_pos": 43330, "end_pos": 20646, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039991", "url": "https://www.ensembl.org/id/ENSSSCG00000039991" } ] } } ], "crossref": [ { "id": "A0A5G2QC82", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039991", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039991", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045687", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045687", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23072:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23072:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BAR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BAR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHGAFPKQHPTHARNSTLHGFWCVEWTPRDFHMVKSTVTPLNSGLRIWHCCELWCGCRCGSSVVYASSCSSNWTSSLGTSICRRGGDIRPPKHVQQTDLAATLSVGLGLPIPKSSIGSLLFPVVEGKPMREQLRFLHLNTVQLSKLLQENVPSYKKEPGFEQFKVSERLHGNWIRLYLEENNSEVLFNLGTKVRRQYLDALRTLSLSLSRQTAQYDVYSMVVGTVVVLEVLALLLLSVPHALSSEAELEVPLLSPMFSLLFYLVLLVLSALHVIVCTSVDSSCYLCSLSWLTAGGVMVLISALLCAVISAVTKVLASGKLPSKNPAHSSSRWSELDLLILLGTLGHVLSLGASSFIEEEHQTWYFLVNTLCLALCHEMYRNCFLEDSGAPKRCLHAEEEFDRATQAPRGRGTDWDTLEIDKVSTGPSPLEVLRDHERWMVLASPWVILTCCRLLRSLNQTGVQWAHRPDLGHWLTSPDHKAELSALAALSLVMTFVLVQRRCSVASKVAMAFGLLGVYCYRVALGNVLFPWQQDNKDISKGITEARFVYVFVLGILFTGTKDLLKSQVLAADSTVRTVGLWEVHSGLVLLAALLSRPHNLPVLVLSLLVQTIMTQFVWRPLRHSTAEVTVMHYWFGQAFFYFQGNSNSIATVDISAGFVGLDAYMEIPAMFLTAFATYTGPVLWASHLVNFLSSETSSGSSLSHACFCYALICSFPVSAYIILVTSLRYHLFIWSVFSPKLLYEGMHLLITAAICVFFTAMDQTNPKS", "length": 769, "header": "tr|A0A5G2QC82-1|A0A5G2QC82_PIG Isoform 1 of Phosphatidylinositol glycan anchor biosynthesis class G OS=Sus scrofa OX=9823 GN=PIGG PE=4 SV=1 CANONICAL=A0A5G2QC82-1" }, "isoforms": [ { "isoform_ac": "A0A287BAR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAR3/entry", "sequence": { "sequence": "TGGNRESGGSPDPPRPRASHRPWGETASAALLRHTRTGAEACFSRGRVSLSKEGSSQTLVFCALSEMGLGDIRPPKHVQQTDLAATLSVGLGLPIPKSSIGSLLFPVVEGKPMREQLRFLHLNTVQLSKLLQENVPSYKKEPGFEQFKVSERLHGNWIRLYLEENNSEVLFNLGTKVRRQYLDALRTLSLSLSRQTAQYDVYSMVVGTVVVLEVLALLLLSVPHALSSEAELEVPLLSPMFSLLFYLVLLVLSALHVIVCTSVDSSCYLCSLSWLTAGGVMVLISALLCAVISAVTKVLASGKLPSKNPAHSSSRWSELDLLILLGTLGHVLSLGASSFIEEEHQTWYFLVNTLCLALCHEMYRNCFLEDSGAPKRCLHAEEEFDRATQAPRGRGTDWDTLEIDKVSTGPSPLEVLRDHERWMVLASPWVILTCCRLLRSLNQTGVQWAHRPDLGHWLTSPDHKAELSALAALSLVMTFVLVQRRCSVASKVAMAFGLLGVYCYRVALGNVLFPWQQDNKDISKGITEARFVYVFVLGILFTGTKDLLKSQVLAADSTVRTVGLWEVHSGLVLLAALLSRPHNLPVLVLSLLVQTIMTQFVWRPLRHSTAEVTVMHYWFGQAFFYFQGNSNSIATVDISAGFVGLDAYMEIPAMFLTAFATYTGPVLWASHLVNFLSSETSSGSSLSHACFCYALICSFPVSAYIILVTSLRYHLFIWSVFSPKLLYEGMHLLITAAICVFFTAMDQTNPKS", "length": 752, "header": "tr|A0A287BAR3-1|A0A287BAR3_PIG Computationally mapped isoform of Phosphatidylinositol glycan anchor biosynthesis class G OS=Sus scrofa OX=9823 GN=PIGG PE=4 SV=2 CANONICAL=A0A5G2QC82-1" }, "locus": { "chromosome": "8", "start_pos": 43020, "end_pos": 20646, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057704.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057704.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053185.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053185.2" } ] } }, { "isoform_ac": "A0A5G2QC82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82/entry", "sequence": { "sequence": "MEHGAFPKQHPTHARNSTLHGFWCVEWTPRDFHMVKSTVTPLNSGLRIWHCCELWCGCRCGSSVVYASSCSSNWTSSLGTSICRRGGDIRPPKHVQQTDLAATLSVGLGLPIPKSSIGSLLFPVVEGKPMREQLRFLHLNTVQLSKLLQENVPSYKKEPGFEQFKVSERLHGNWIRLYLEENNSEVLFNLGTKVRRQYLDALRTLSLSLSRQTAQYDVYSMVVGTVVVLEVLALLLLSVPHALSSEAELEVPLLSPMFSLLFYLVLLVLSALHVIVCTSVDSSCYLCSLSWLTAGGVMVLISALLCAVISAVTKVLASGKLPSKNPAHSSSRWSELDLLILLGTLGHVLSLGASSFIEEEHQTWYFLVNTLCLALCHEMYRNCFLEDSGAPKRCLHAEEEFDRATQAPRGRGTDWDTLEIDKVSTGPSPLEVLRDHERWMVLASPWVILTCCRLLRSLNQTGVQWAHRPDLGHWLTSPDHKAELSALAALSLVMTFVLVQRRCSVASKVAMAFGLLGVYCYRVALGNVLFPWQQDNKDISKGITEARFVYVFVLGILFTGTKDLLKSQVLAADSTVRTVGLWEVHSGLVLLAALLSRPHNLPVLVLSLLVQTIMTQFVWRPLRHSTAEVTVMHYWFGQAFFYFQGNSNSIATVDISAGFVGLDAYMEIPAMFLTAFATYTGPVLWASHLVNFLSSETSSGSSLSHACFCYALICSFPVSAYIILVTSLRYHLFIWSVFSPKLLYEGMHLLITAAICVFFTAMDQTNPKS", "length": 769, "header": "tr|A0A5G2QC82-1|A0A5G2QC82_PIG Isoform 1 of Phosphatidylinositol glycan anchor biosynthesis class G OS=Sus scrofa OX=9823 GN=PIGG PE=4 SV=1 CANONICAL=A0A5G2QC82-1" }, "locus": { "chromosome": "8", "start_pos": 43020, "end_pos": 21090, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080269.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080269.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062164.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "CP2 mannose-ethanolamine phosphotransferase activity", "id": "GO:0051267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "pmid": "" }, { "name": "mannose-ethanolamine phosphotransferase activity", "id": "GO:0051377", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051377", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 769, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC82" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC82" }, { "id": "PF19316", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19316" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GPI ethanolamine phosphate transferase 2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 436, "end_pos": 751, "start_aa": "His", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC96-1", "uniprot_ac": "A0A5G2QC96", "uniprot_id": "A0A5G2QC96_PIG", "mass": { "chemical_mass": 75253.0, "monoisotopic_mass": 75253.0 }, "refseq": { "ac": "XP_003361662", "name": "coagulation factor XIII B chain isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361662" }, "gene_names": [ { "name": "F13B", "type": "recommended", "evidence": [ { "id": "A0A5G2QC96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ] }, { "name": "F13B", "type": "synonym", "evidence": [ { "id": "XP_003361662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361662" } ] } ], "protein_names": [ { "name": "Coagulation factor XIII B chain", "type": "synonym", "evidence": [ { "id": "A0A5G2QC96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96/entry#names_and_taxonomy" } ] }, { "name": "coagulation factor XIII B chain isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003361662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361662" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "F13B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96", "locus": {} } ], "crossref": [ { "id": "A0A5G2QC96", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023301", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023301", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627330", "url": "https://www.ncbi.nlm.nih.gov/gene/100627330", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627330", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QC96", "url": "https://www.orthodb.org/?gene=A0A5G2QC96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45785:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45785:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9769733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003361662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361662", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BEA7", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R679", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R679", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R679-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R679-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R952", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R952", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R952-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R952-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Q6", "url": "https://www.uniprot.org/uniprotkb/I3L6Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Q6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKPCGFPTVENGRIAQYYYTFESYYFPMGLNQNLLFSCLAGYTTETGKQEARTTCTAAGWSPDPRCFKKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLEPCSVDVDHLSRNNLEMKWNYEGKILHGDLIDFVCKQGYDLSPSSPLSELSVQCNRGEVKYPLCIRKESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLEPCTLSYVKMEHNNLLLKWTFDNRPYILHGEYIEFLCKGDTYIAELPVIGSELRVQCDRGQLKYPRCVQRERTLSHQEPLRTYK", "length": 663, "header": "tr|A0A5G2QC96-1|A0A5G2QC96_PIG Isoform 1 of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=1 CANONICAL=A0A5G2QC96-1" }, "isoforms": [ { "isoform_ac": "A0A287BEA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA7/entry", "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKPCGFPTVENGRIAQYYYTFESYYFPMGLNQNLLFSCLAGYTTETGKQEARTTCTAAGWSPDPRCFKKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLDIREVPFMAQRLTNPTGSMRMRVGSLASFSGLKIWRCRELWSQMWFRS", "length": 560, "header": "tr|A0A287BEA7-1|A0A287BEA7_PIG Computationally mapped isoform of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=2 CANONICAL=A0A5G2QC96-1" }, "locus": { "chromosome": "AEMK02000698.1", "start_pos": 2608325, "end_pos": 2582143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054661.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054661.2" } ] } }, { "isoform_ac": "A0A5G2QC96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96/entry", "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKPCGFPTVENGRIAQYYYTFESYYFPMGLNQNLLFSCLAGYTTETGKQEARTTCTAAGWSPDPRCFKKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLEPCSVDVDHLSRNNLEMKWNYEGKILHGDLIDFVCKQGYDLSPSSPLSELSVQCNRGEVKYPLCIRKESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLEPCTLSYVKMEHNNLLLKWTFDNRPYILHGEYIEFLCKGDTYIAELPVIGSELRVQCDRGQLKYPRCVQRERTLSHQEPLRTYK", "length": 663, "header": "tr|A0A5G2QC96-1|A0A5G2QC96_PIG Isoform 1 of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=1 CANONICAL=A0A5G2QC96-1" }, "locus": { "chromosome": "AEMK02000698.1", "start_pos": 2613221, "end_pos": 2582143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069906.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069906.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061154.1" } ] } }, { "isoform_ac": "A0A5G2R679-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R679/entry", "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKPCGFPTVENGRIAQYYYTFESYYFPMGLNQNLLFSCLAGYTTETGKQEARTTCTAAGWSPDPRCFKKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLGSLPTAYGSSQARGLIRAVAAGLHHGHSNAGSEPRLQPTPQLRQCWILNPLSKTRDGTCNLVVPSRIC", "length": 580, "header": "tr|A0A5G2R679-1|A0A5G2R679_PIG Computationally mapped isoform of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=1 CANONICAL=A0A5G2QC96-1" }, "locus": { "chromosome": "AEMK02000698.1", "start_pos": 2606939, "end_pos": 2582143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082730.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082730.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072756.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072756.1" } ] } }, { "isoform_ac": "A0A5G2R952-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R952/entry", "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLEPCSVDVDHLSRNNLEMKWNYEGKILHGDLIDFVCKQGYDLSPSSPLSELSVQCNRGEVKYPLCIRKESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLEPCTLSYVKMEHNNLLLKWTFDNRPYILHGEYIEFLCKGDTYIAELPVIGSELRVQCDRGQLKYPRCVQRERTLSHQEPLRTYK", "length": 596, "header": "tr|A0A5G2R952-1|A0A5G2R952_PIG Computationally mapped isoform of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=1 CANONICAL=A0A5G2QC96-1" }, "locus": { "chromosome": "AEMK02000698.1", "start_pos": 2613221, "end_pos": 2582143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069274.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069274.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072854.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072854.1" } ] } }, { "isoform_ac": "I3L6Q6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Q6/entry", "sequence": { "sequence": "MRSEHLAFIIILIISGQLYAEEKPCGFPTVENGRIAQYYYTFESYYFPMGLNQNLLFSCLAGYTTETGKQEARTTCTAAGWSPDPRCFKKCPKPDLRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCRKEHETCLAPELHHGSYSTTQKTFKVKDKVRYECAPGYHTASGKRTEEVECHPYGWALTPRCAKLKCSSLRLIENGYFHPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWYPESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIRCENGKWTEPPQCVEENERTACKEPPFVENGTANPRSKLYYSGDKVTYTCESGYHLRGPGEIICTRGKWTLPPACVENTENCNPPPDIINGAVIGGLLANYTAGSSVEYRCNEYYLLKGAKISHCEQGKWSTPPVCLESRRMCATPPLIKNGVTVSPAAGAYENGSSVEYRCFDHHFLQGSRKSHCLEGVWTPPPLCLEPCTLSYVKMEHNNLLLKWTFDNRPYILHGEYIEFLCKGDTYIAELPVIGSELRVQCDRGQLKYPRCVQRER", "length": 584, "header": "tr|I3L6Q6-1|I3L6Q6_PIG Computationally mapped isoform of Coagulation factor XIII B chain OS=Sus scrofa OX=9823 GN=F13B PE=1 SV=4 CANONICAL=A0A5G2QC96-1" }, "locus": { "chromosome": "AEMK02000698.1", "start_pos": 2611519, "end_pos": 2582143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022824.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022824.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019708.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019708.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627330", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627330", "resource": "KEGG Pathway" }, { "id": "R-SSC-9769733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769733", "resource": "Reactome", "description": "Fibrin formation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "blood coagulation", "id": "GO:0007596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007596", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ], "pmid": "" }, { "name": "blood coagulation, fibrin clot formation", "id": "GO:0072378", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072378", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 663, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC96" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QC96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC96" }, { "id": "PS50923", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sushi", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 148, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 344, "end_pos": 346 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 545, "end_pos": 547 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC97-1", "uniprot_ac": "A0A5G2QC97", "uniprot_id": "A0A5G2QC97_PIG", "mass": { "chemical_mass": 14074.0, "monoisotopic_mass": 14074.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QC97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97", "locus": {} } ], "crossref": [ { "id": "A0A5G2QC97", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC97", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046197", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046197", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QC97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSRIVGSYGSSMYRFLRYVYTDTHSGYTNLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVRCYLMVVLICISLIISDVEHFFMCLLAICVSSLEKYYSGLLPIFPLIDWLFCCWVV", "length": 121, "header": "tr|A0A5G2QC97-1|A0A5G2QC97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC97-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97/entry", "sequence": { "sequence": "MPKSRIVGSYGSSMYRFLRYVYTDTHSGYTNLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVRCYLMVVLICISLIISDVEHFFMCLLAICVSSLEKYYSGLLPIFPLIDWLFCCWVV", "length": 121, "header": "tr|A0A5G2QC97-1|A0A5G2QC97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QC97-1" }, "locus": { "chromosome": "1", "start_pos": 212045172, "end_pos": 212044810, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086741.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086741.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061714.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061714.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 121, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC97" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCA3-1", "uniprot_ac": "A0A5G2QCA3", "uniprot_id": "A0A5G2QCA3_PIG", "mass": { "chemical_mass": 60446.0, "monoisotopic_mass": 60446.0 }, "refseq": { "ac": "XP_013849639", "name": "atlastin-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849639" }, "gene_names": [ { "name": "ATL3", "type": "recommended", "evidence": [ { "id": "A0A5G2QCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ] }, { "name": "ATL3", "type": "synonym", "evidence": [ { "id": "XP_013849639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849639" } ] } ], "protein_names": [ { "name": "Atlastin GTPase 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3/entry#names_and_taxonomy" } ] }, { "name": "atlastin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013849639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849639" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3", "locus": { "chromosome": "2", "start_pos": 8408917, "end_pos": 8361774, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013054", "url": "https://www.ensembl.org/id/ENSSSCG00000013054" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013054", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013054", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512265", "url": "https://www.ncbi.nlm.nih.gov/gene/100512265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512265", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QYQKNME", "url": "https://omabrowser.org/oma/group/QYQKNME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QCA3", "url": "https://www.orthodb.org/?gene=A0A5G2QCA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RPY1", "url": "https://www.orthodb.org/?gene=F1RPY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013849639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849639", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZXQ0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPY1", "url": "https://www.uniprot.org/uniprotkb/F1RPY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPY1-1", "url": "https://www.uniprot.org/uniprotkb/F1RPY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSPQRAVAAASRGAGDAMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGDKPYLSPDILEGKHCEFKQLALDHFKKTKKMGGKDFSLRYQQELEEEIQELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAFVLEQATSHISNSTQAAVRDAVAGRPPSDKKAQ", "length": 541, "header": "tr|A0A5G2QCA3-1|A0A5G2QCA3_PIG Isoform 1 of Atlastin GTPase 3 OS=Sus scrofa OX=9823 GN=ATL3 PE=1 SV=1 CANONICAL=A0A5G2QCA3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXQ0/entry", "sequence": { "sequence": "MRTAGGYLESVRLQFPTDRCFQRAAPGDAMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQVKNTLCNVFTNHNSSFLKLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGDKPYLSPDILEGKHCEFKQLALDHFKKTKKMGGKDFSLRYQQELEEEIQELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAFVLEQATSHISNSTQAAVRDAVAGRPPSDKKAQ", "length": 553, "header": "tr|A0A286ZXQ0-1|A0A286ZXQ0_PIG Computationally mapped isoform of Atlastin GTPase 3 OS=Sus scrofa OX=9823 GN=ATL3 PE=1 SV=2 CANONICAL=A0A5G2QCA3-1" }, "locus": { "chromosome": "2", "start_pos": 8404567, "end_pos": 8361781, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041510.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041510.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036421.2" } ] } }, { "isoform_ac": "A0A5G2QCA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3/entry", "sequence": { "sequence": "MLSPQRAVAAASRGAGDAMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGDKPYLSPDILEGKHCEFKQLALDHFKKTKKMGGKDFSLRYQQELEEEIQELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAFVLEQATSHISNSTQAAVRDAVAGRPPSDKKAQ", "length": 541, "header": "tr|A0A5G2QCA3-1|A0A5G2QCA3_PIG Isoform 1 of Atlastin GTPase 3 OS=Sus scrofa OX=9823 GN=ATL3 PE=1 SV=1 CANONICAL=A0A5G2QCA3-1" }, "locus": { "chromosome": "2", "start_pos": 8404567, "end_pos": 8362160, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074125.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074125.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061164.1" } ] } }, { "isoform_ac": "A0A8W4FAJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAJ5/entry", "sequence": { "sequence": "MLSPQRAVAAASRGAGDAMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGDKPYLSPDILEGKHCEFKQLALDHFKKTKKMGGKDFSLRYQQELEEEIQELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAFVLEQATSHISNSTQAAVRDAVAGRPPSDKKAQ", "length": 521, "header": "tr|A0A8W4FAJ5-1|A0A8W4FAJ5_PIG Computationally mapped isoform of Atlastin GTPase 3 OS=Sus scrofa OX=9823 GN=ATL3 PE=1 SV=1 CANONICAL=A0A5G2QCA3-1" }, "locus": { "chromosome": "2", "start_pos": 8404567, "end_pos": 8362160, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104000.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104000.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075860.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075860.1" } ] } }, { "isoform_ac": "F1RPY1-1", "url": "https://www.uniprot.org/uniprotkb/F1RPY1/entry", "sequence": { "sequence": "MRTAGGYLESVRLQFPTDRCFQRAAPGDAMEGGKPGPVQVVMVQKDQHSFELEEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWNEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLEKRLQVKEHQHEEIQNVRNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKDIDSEFKEQLQILIPYVLNPANLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGDKPYLSPDILEGKHCEFKQLALDHFKKTKKMGGKDFSLRYQQELEEEIQELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAFVLEQATSHISNSTQAAVRDAVAGRPPSDKKAQ", "length": 552, "header": "tr|F1RPY1-1|F1RPY1_PIG Computationally mapped isoform of Atlastin GTPase 3 OS=Sus scrofa OX=9823 GN=ATL3 PE=1 SV=4 CANONICAL=A0A5G2QCA3-1" }, "locus": { "chromosome": "2", "start_pos": 8404567, "end_pos": 8361781, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014268.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014268.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013882.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013882.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512265", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512265", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q0ZHH6-1", "protein_name": "Atlastin-3", "gene_name": "Atl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSPQRTAAVASRGAGDAMENGKPGPVQVVLVHKEQHSFELEERALASVLLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKEHGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKEVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNYGLQGGMSFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKEYIASEFKEQLQTLIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAANNLAAAASAKDIYYSSMEEICGGEKPYLSPDILEEKHQEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEITELYENFCKHNGSKNVFSTFRTPAVLFTGIAVLYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYLELGGAIDSGAAYVLEQASSHIGNSTQAAVRDAIAGRPPADKKSQ", "length": 541 }, "evidence": [ { "id": "A0A5G2QCA3", "url": "https://omabrowser.org/oma/group/A0A5G2QCA3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DD88-1", "protein_name": "Atlastin-3", "gene_name": "ATL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSPQRVAAAASRGADDAMESSKPGPVQVVLVQKDQHSFELDEKALASILLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYSYGLQGGMAFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGKLKDIAGEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVALYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGAAYVLEQASSHIGNSTQATVRDAVVGRPSMDKKAQ", "length": 541 }, "evidence": [ { "id": "A0A5G2QCA3", "url": "https://omabrowser.org/oma/group/A0A5G2QCA3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91YH5-1", "protein_name": "Atlastin-3", "gene_name": "Atl3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSPQRTAAVASRGAGDAMENGKPGPVQVVLVHKEQHSFELEERALASVLLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKEGGHSDWLGDPEEPLTGFSWRGGSDPETTGIQIWSEVFTVKKPCGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLIRDWSFPYEYNYGLQGGMAFLDKRLHVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPNFDGKLKDIASEFKEQLQALIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPHPKSMLQATAEANNLAAAASAKDIYYNNMEEICGGEKPYLSPDILEEKHLEFKQLALDHFKKIKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIAALYIASGFTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDSGAAYVLEQASSHIGNSTQAAVRDAVVGRPPADKKSQ", "length": 541 }, "evidence": [ { "id": "A0A5G2QCA3", "url": "https://omabrowser.org/oma/group/A0A5G2QCA3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "GTPase-dependent fusogenic activity", "id": "GO:0140523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140523", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "endoplasmic reticulum tubular network membrane organization", "id": "GO:1990809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990809", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "endoplasmic reticulum organization", "id": "GO:0007029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007029", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane fusion", "id": "GO:0016320", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016320", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum tubular network membrane", "id": "GO:0098826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098826", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA3" }, { "id": "PS51715", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51715" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GB1/RHD3-type G", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 305, "start_aa": "Asp", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 312, "end_pos": 314 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 520, "end_pos": 522 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCA7-1", "uniprot_ac": "A0A5G2QCA7", "uniprot_id": "A0A5G2QCA7_PIG", "mass": { "chemical_mass": 11049.0, "monoisotopic_mass": 11049.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DUF1725 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QCA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCA7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041080", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041080", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCA7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGKDTCTPVFIAALYTIAKMWKQPKSPSVEEWIKKMWYIHTVGYYSAFKRKEIVAFSATWMDLEIFMLSEVSQTVRHQHQMLSLACESKKRTQ", "length": 94, "header": "tr|A0A5G2QCA7-1|A0A5G2QCA7_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCA7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7/entry", "sequence": { "sequence": "MPGKDTCTPVFIAALYTIAKMWKQPKSPSVEEWIKKMWYIHTVGYYSAFKRKEIVAFSATWMDLEIFMLSEVSQTVRHQHQMLSLACESKKRTQ", "length": 94, "header": "tr|A0A5G2QCA7-1|A0A5G2QCA7_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCA7-1" }, "locus": { "chromosome": "4", "start_pos": 120497789, "end_pos": 120497508, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090709.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090709.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061169.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061169.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCA7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 94, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCA7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCA7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCD7-1", "uniprot_ac": "A0A5G2QCD7", "uniprot_id": "A0A5G2QCD7_PIG", "mass": { "chemical_mass": 16338.0, "monoisotopic_mass": 16338.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DUF1725 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QCD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000049361", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049361", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LW16", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LW16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LW16-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LW16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHPYSSIFTIAKTWKQPKCPLTDEGIKKMWCIYSVEYYSAIKKNEIMLFAATWMDLEIIILSEIRERRILYDITYMYNLKLTEVPTVVQRDKWHLGNAGMQVSSLALHSGLRIQCWYSCGLGYDCSSDLIPGLGTPYCHEV", "length": 141, "header": "tr|A0A5G2QCD7-1|A0A5G2QCD7_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QCD7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7/entry", "sequence": { "sequence": "MHPYSSIFTIAKTWKQPKCPLTDEGIKKMWCIYSVEYYSAIKKNEIMLFAATWMDLEIIILSEIRERRILYDITYMYNLKLTEVPTVVQRDKWHLGNAGMQVSSLALHSGLRIQCWYSCGLGYDCSSDLIPGLGTPYCHEV", "length": 141, "header": "tr|A0A5G2QCD7-1|A0A5G2QCD7_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QCD7-1" }, "locus": { "chromosome": "7", "start_pos": 93862564, "end_pos": 93862142, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080298.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080298.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067844.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067844.2" } ] } }, { "isoform_ac": "A0A8D1LW16-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LW16/entry", "sequence": { "sequence": "MHPYSSIFTIAKTWKQPKCPLTDEGIKKMWCIYSVEYYSAIKKNEIMLFAATWMDLEIIILSEIRERRILYDITYMYNLKLTEVPTVVQRDKWHLGNAGMQVSSLALHSGLRIQCWYSCGLGYDCSSDLIPGLGTPY", "length": 137, "header": "tr|A0A8D1LW16-1|A0A8D1LW16_PIG Computationally mapped isoform of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCD7-1" }, "locus": { "chromosome": "7", "start_pos": 93862564, "end_pos": 93862154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077057.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077057.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072309.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072309.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCE2-1", "uniprot_ac": "A0A5G2QCE2", "uniprot_id": "A0A5G2QCE2_PIG", "mass": { "chemical_mass": 28662.0, "monoisotopic_mass": 28662.0 }, "refseq": {}, "gene_names": [ { "name": "LDLRAD2", "type": "recommended", "evidence": [ { "id": "A0A5G2QCE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2" } ] } ], "protein_names": [ { "name": "Low density lipoprotein receptor class A domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QCE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LDLRAD2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2", "locus": { "chromosome": "6", "start_pos": 79849661, "end_pos": 79838616, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000050518", "url": "https://www.ensembl.org/id/ENSSSCG00000050518" } ] } } ], "crossref": [ { "id": "A0A5G2QCE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050518", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050518", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24652:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24652:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QCE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEACPLHLPQRLLLLGVAALAAPVPHTGDLVDLCGQTWQGAGLLLRSHPTSRRFYFVAPHTDCRLWLRAAAPGDRIRFQFRFFLVYSLTPASPPPPAPNASSPADPCAPGSYLQFYEGPPGAPRPLGAPLCGLTIPAPVVSSGDFLALRLVTRGRQPRVDFVGEVTSFRLGSCGAYFPCRNGRCIPPSLVCDHWDMDNCGDGSDQASWPPANCRGPSLAPSKAAGTDAGTSQPLTLSLALGSLGTLGTAAERSPPAGWDHERQDAALEGTAS", "length": 272, "header": "tr|A0A5G2QCE2-1|A0A5G2QCE2_PIG Isoform 1 of Low density lipoprotein receptor class A domain containing 2 OS=Sus scrofa OX=9823 GN=LDLRAD2 PE=4 SV=1 CANONICAL=A0A5G2QCE2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2/entry", "sequence": { "sequence": "MEACPLHLPQRLLLLGVAALAAPVPHTGDLVDLCGQTWQGAGLLLRSHPTSRRFYFVAPHTDCRLWLRAAAPGDRIRFQFRFFLVYSLTPASPPPPAPNASSPADPCAPGSYLQFYEGPPGAPRPLGAPLCGLTIPAPVVSSGDFLALRLVTRGRQPRVDFVGEVTSFRLGSCGAYFPCRNGRCIPPSLVCDHWDMDNCGDGSDQASWPPANCRGPSLAPSKAAGTDAGTSQPLTLSLALGSLGTLGTAAERSPPAGWDHERQDAALEGTAS", "length": 272, "header": "tr|A0A5G2QCE2-1|A0A5G2QCE2_PIG Isoform 1 of Low density lipoprotein receptor class A domain containing 2 OS=Sus scrofa OX=9823 GN=LDLRAD2 PE=4 SV=1 CANONICAL=A0A5G2QCE2-1" }, "locus": { "chromosome": "6", "start_pos": 79849661, "end_pos": 79838616, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077310.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077310.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061769.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061769.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCE2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCE6-1", "uniprot_ac": "A0A5G2QCE6", "uniprot_id": "A0A5G2QCE6_PIG", "mass": { "chemical_mass": 59866.0, "monoisotopic_mass": 59866.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM181", "type": "recommended", "evidence": [ { "id": "A0A5G2QCE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" } ] } ], "protein_names": [ { "name": "Transmembrane protein 181", "type": "synonym", "evidence": [ { "id": "A0A5G2QCE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM181", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6", "locus": { "chromosome": "1", "start_pos": 8562844, "end_pos": 8635462, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024876", "url": "https://www.ensembl.org/id/ENSSSCG00000024876" } ] } } ], "crossref": [ { "id": "A0A5G2QCE6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024876", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024876", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31918:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31918:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU18", "url": "https://www.uniprot.org/uniprotkb/I3LU18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU18-1", "url": "https://www.uniprot.org/uniprotkb/I3LU18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAEYPAFEPPLCSELKHLCKRLQEAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFVCFGLTVFVGIRGPKVIQTSAANFSLNNSKKLKPIQMLSNPLSTYNQQLWLTCVVELDQSKETSIQTSFPMTVKVDGVAQDGTTVFVHNKVHNRTRTLTCAEKCAEIIVAHLGYLNYTQYTVLVLEHLKLPIKDVNFTWKTYDPAFSQLEIWFRFVFVVLTFVVTCLFAHSLRKFSMRDWGIEQKWMSILLPLLLLYNDPFFPLSFLVNSWFPGMLDDLFQSVFLCALLLFWLCVYHGIRVQGERKCLTFYVPKFFIVGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLVVRACSELRHMPYVDLRLKFLTALTFVVLVISIVILYLRFGAQVLQDNFVAELSTHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDEVIYGSDYEEMPLQNGQAIRAQYKEGSESD", "length": 515, "header": "tr|A0A5G2QCE6-1|A0A5G2QCE6_PIG Isoform 1 of Transmembrane protein 181 OS=Sus scrofa OX=9823 GN=TMEM181 PE=4 SV=2 CANONICAL=A0A5G2QCE6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6/entry", "sequence": { "sequence": "MDAEYPAFEPPLCSELKHLCKRLQEAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFVCFGLTVFVGIRGPKVIQTSAANFSLNNSKKLKPIQMLSNPLSTYNQQLWLTCVVELDQSKETSIQTSFPMTVKVDGVAQDGTTVFVHNKVHNRTRTLTCAEKCAEIIVAHLGYLNYTQYTVLVLEHLKLPIKDVNFTWKTYDPAFSQLEIWFRFVFVVLTFVVTCLFAHSLRKFSMRDWGIEQKWMSILLPLLLLYNDPFFPLSFLVNSWFPGMLDDLFQSVFLCALLLFWLCVYHGIRVQGERKCLTFYVPKFFIVGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLVVRACSELRHMPYVDLRLKFLTALTFVVLVISIVILYLRFGAQVLQDNFVAELSTHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDEVIYGSDYEEMPLQNGQAIRAQYKEGSESD", "length": 515, "header": "tr|A0A5G2QCE6-1|A0A5G2QCE6_PIG Isoform 1 of Transmembrane protein 181 OS=Sus scrofa OX=9823 GN=TMEM181 PE=4 SV=2 CANONICAL=A0A5G2QCE6-1" }, "locus": { "chromosome": "1", "start_pos": 8635425, "end_pos": 8566754, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082395.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082395.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061219.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061219.2" } ] } }, { "isoform_ac": "I3LU18-1", "url": "https://www.uniprot.org/uniprotkb/I3LU18/entry", "sequence": { "sequence": "MEPLAPMRLYTLSKRHFVLVFVVFFVCFGLTVFVGIRGPKVIQTSAANFSLNNSKKLKPIQMLSNPLSTYNQQLWLTCVVELDQSKETSIQTSFPMTVKVDGVAQDGTTVFVHNKVHNRTRTLTCAEKCAEIIVAHLGYLNYTQYTVLVLEHLKLPIKDVNFTWKTYDPAFSQLEIWFRFVFVVLTFVVTCLFAHSLRKFSMRDWGIEQKWMSILLPLLLLYNDPFFPLSFLVNSWFPGMLDDLFQSVFLCALLLFWLCVYHGIRVQGERKCLTFYVPKFFIVGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLVVRACSELRHMPYVDLRLKFLTALTFVVLVISIVILYLRFGAQVLQDNFVAELSTHYQNSAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPAFSMLNDSDDEVIYGSDYEEMPLQNGQAIRAQYKEGSESD", "length": 474, "header": "tr|I3LU18-1|I3LU18_PIG Computationally mapped isoform of Transmembrane protein 181 OS=Sus scrofa OX=9823 GN=TMEM181 PE=4 SV=4 CANONICAL=A0A5G2QCE6-1" }, "locus": { "chromosome": "1", "start_pos": 8610024, "end_pos": 8566754, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026720.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026720.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027617.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027617.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "toxic substance binding", "id": "GO:0015643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015643", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 515, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCE6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" }, { "id": "PF21885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TMEM181 GOLD", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 208, "start_aa": "Lys", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QCE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE6" }, { "id": "PF06664", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06664" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Wntless-like transmembrane", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 463, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 89, "end_pos": 91 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCH0-1", "uniprot_ac": "A0A5G2QCH0", "uniprot_id": "A0A5G2QCH0_PIG", "mass": { "chemical_mass": 32360.0, "monoisotopic_mass": 32360.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QCH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041010", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041010", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QCH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPHNWDHAGNAWYHTYQEQRVAGGPTGNSAWVEDHRVMLAASPAHPQGSPKRMTQILFQAFNPLAIRVASQASLSLGDAPGHTSGVDMVSGGRSPTCCPAMRVTPCPPLLHQDLATGDLTQHGNSFTTAAEQESCLTPRSSAAPWPWPWRRRWPPPCPPAPCAELRAAARSGAHYPPGAGPCGIHRAVCCSVVSTSGGTCPPARGCLVGPPRTRAPGTGCRGSEGRGPQGDHHDPPSSNSVLGGVRLRPGFAVHPPRMRIGRRESDLSGHAPAPANASKRTEPGWAASAAPASPEHELVLADCTPQPAS", "length": 309, "header": "tr|A0A5G2QCH0-1|A0A5G2QCH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCH0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0/entry", "sequence": { "sequence": "MPHNWDHAGNAWYHTYQEQRVAGGPTGNSAWVEDHRVMLAASPAHPQGSPKRMTQILFQAFNPLAIRVASQASLSLGDAPGHTSGVDMVSGGRSPTCCPAMRVTPCPPLLHQDLATGDLTQHGNSFTTAAEQESCLTPRSSAAPWPWPWRRRWPPPCPPAPCAELRAAARSGAHYPPGAGPCGIHRAVCCSVVSTSGGTCPPARGCLVGPPRTRAPGTGCRGSEGRGPQGDHHDPPSSNSVLGGVRLRPGFAVHPPRMRIGRRESDLSGHAPAPANASKRTEPGWAASAAPASPEHELVLADCTPQPAS", "length": 309, "header": "tr|A0A5G2QCH0-1|A0A5G2QCH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCH0-1" }, "locus": { "chromosome": "12", "start_pos": 60393841, "end_pos": 60392915, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067965.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067965.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061800.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061800.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCH0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 104 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCK2-1", "uniprot_ac": "A0A5G2QCK2", "uniprot_id": "A0A5G2QCK2_PIG", "mass": { "chemical_mass": 24982.0, "monoisotopic_mass": 24982.0 }, "refseq": {}, "gene_names": [ { "name": "EFCAB2", "type": "recommended", "evidence": [ { "id": "A0A5G2QCK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" } ] } ], "protein_names": [ { "name": "EF-hand calcium binding domain 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QCK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFCAB2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2", "locus": { "chromosome": "10", "start_pos": 17656201, "end_pos": 17628396, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010878", "url": "https://www.ensembl.org/id/ENSSSCG00000010878" } ] } } ], "crossref": [ { "id": "A0A5G2QCK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010878", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010878", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QCK2", "url": "https://www.ebi.ac.uk/intact/interactors/id:A0A5G2QCK2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46763", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46763", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46763:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46763:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEKNGVGSGGAGRQCPGEQRLPQDPKAAAVLRKNKGKENHCAAVLSRPKDGDSIPFLCVQLSHGDPEHSVQSPGPRGREMSFPQAPAGELAALSLACREIGTIIRSLGCCPSEGELHDLIAEVEEEEPTGYIRYEKFLPVMTEVLLERRYRPIPEDILLRAFEVLDPAKRGFLTKEELIKYMTEEGEPFSQEEMEEMLSAAIDPESNAIHYKDYITMMVIDDN", "length": 225, "header": "tr|A0A5G2QCK2-1|A0A5G2QCK2_PIG Isoform 1 of EF-hand calcium binding domain 2 OS=Sus scrofa OX=9823 GN=EFCAB2 PE=4 SV=2 CANONICAL=A0A5G2QCK2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2/entry", "sequence": { "sequence": "MEPEKNGVGSGGAGRQCPGEQRLPQDPKAAAVLRKNKGKENHCAAVLSRPKDGDSIPFLCVQLSHGDPEHSVQSPGPRGREMSFPQAPAGELAALSLACREIGTIIRSLGCCPSEGELHDLIAEVEEEEPTGYIRYEKFLPVMTEVLLERRYRPIPEDILLRAFEVLDPAKRGFLTKEELIKYMTEEGEPFSQEEMEEMLSAAIDPESNAIHYKDYITMMVIDDN", "length": 225, "header": "tr|A0A5G2QCK2-1|A0A5G2QCK2_PIG Isoform 1 of EF-hand calcium binding domain 2 OS=Sus scrofa OX=9823 GN=EFCAB2 PE=4 SV=2 CANONICAL=A0A5G2QCK2-1" }, "locus": { "chromosome": "10", "start_pos": 17655146, "end_pos": 17628437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074237.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074237.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061286.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061286.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 225, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCK2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCK2" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 190, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCP1-1", "uniprot_ac": "A0A5G2QCP1", "uniprot_id": "A0A5G2QCP1_PIG", "mass": { "chemical_mass": 15614.0, "monoisotopic_mass": 15614.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QCP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCP1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044499", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044499", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWTLAMALEAGVRGKAGWLALHSHSEGLLTLAPVPQHLPPLPPKVLHSVCGVPSFRLSSCLCFSLSTSGCVCVHTRGCICSLVSPSGSGCHFWLSALSPATSVPQPEREESLLYTHYIWAAGPQYRNHAVSLPPSQVSQSEVPGW", "length": 146, "header": "tr|A0A5G2QCP1-1|A0A5G2QCP1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCP1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1/entry", "sequence": { "sequence": "MDWTLAMALEAGVRGKAGWLALHSHSEGLLTLAPVPQHLPPLPPKVLHSVCGVPSFRLSSCLCFSLSTSGCVCVHTRGCICSLVSPSGSGCHFWLSALSPATSVPQPEREESLLYTHYIWAAGPQYRNHAVSLPPSQVSQSEVPGW", "length": 146, "header": "tr|A0A5G2QCP1-1|A0A5G2QCP1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCP1-1" }, "locus": { "chromosome": "14", "start_pos": 111647554, "end_pos": 111647117, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070877.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070877.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059804.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059804.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCP1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 146, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCP1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCP6-1", "uniprot_ac": "A0A5G2QCP6", "uniprot_id": "A0A5G2QCP6_PIG", "mass": { "chemical_mass": 21882.0, "monoisotopic_mass": 21882.0 }, "refseq": { "ac": "XP_020949548", "name": "sorting nexin-22 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949548" }, "gene_names": [ { "name": "SNX22", "type": "recommended", "evidence": [ { "id": "A0A5G2QCP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ] }, { "name": "SNX22", "type": "synonym", "evidence": [ { "id": "XP_020949548", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949548" } ] } ], "protein_names": [ { "name": "Sorting nexin 22", "type": "synonym", "evidence": [ { "id": "A0A5G2QCP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6/entry#names_and_taxonomy" } ] }, { "name": "sorting nexin-22 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020949548", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949548" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNX22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6", "locus": { "chromosome": "1", "start_pos": 107891699, "end_pos": 107897529, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037275", "url": "https://www.ensembl.org/id/ENSSSCG00000037275" } ] } } ], "crossref": [ { "id": "A0A5G2QCP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037275", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037275", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06880", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06880", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624664", "url": "https://www.ncbi.nlm.nih.gov/gene/100624664", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624664", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624664", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LTFHCDP", "url": "https://omabrowser.org/oma/group/LTFHCDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QCP6", "url": "https://www.orthodb.org/?gene=A0A5G2QCP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15813:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15813:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949548", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949548", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZZ20", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZ20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZ20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQVHIPSVGPEAEGTRQSPDRGHMVFRVEVLCRGRRHTVQRRYSEFHALHKRIKKLYRVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQDVPKELLEFLSLRHFPTDPKASSWGTLGQLLPDNSSSQLCHRPVISFCVDPYICIPPPGPLPDMVVNGVLQGLYGFSTSTAKTEPEDACHPAPVPLTP", "length": 193, "header": "tr|A0A5G2QCP6-1|A0A5G2QCP6_PIG Isoform 1 of Sorting nexin 22 OS=Sus scrofa OX=9823 GN=SNX22 PE=3 SV=1 CANONICAL=A0A5G2QCP6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZ20-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZ20/entry", "sequence": { "sequence": "MLQVHIPSVGPEAEGTRQSPDRGHMVFRVEVLCRGRRHTVQRRYSEFHALHKRIKKLYRVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQDVPKELLEFLSLRHFPTDPKASSWGSQLCHRPVISFCVDPYICIPPPGPLPDMVVNGVLQGLYGFSTSTAKTEPEDACHPAPVPLTP", "length": 182, "header": "tr|A0A286ZZ20-1|A0A286ZZ20_PIG Computationally mapped isoform of Sorting nexin 22 OS=Sus scrofa OX=9823 GN=SNX22 PE=3 SV=1 CANONICAL=A0A5G2QCP6-1" }, "locus": { "chromosome": "1", "start_pos": 107897480, "end_pos": 107893543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040451.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040451.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036758.1" } ] } }, { "isoform_ac": "A0A5G2QCP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6/entry", "sequence": { "sequence": "MLQVHIPSVGPEAEGTRQSPDRGHMVFRVEVLCRGRRHTVQRRYSEFHALHKRIKKLYRVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQDVPKELLEFLSLRHFPTDPKASSWGTLGQLLPDNSSSQLCHRPVISFCVDPYICIPPPGPLPDMVVNGVLQGLYGFSTSTAKTEPEDACHPAPVPLTP", "length": 193, "header": "tr|A0A5G2QCP6-1|A0A5G2QCP6_PIG Isoform 1 of Sorting nexin 22 OS=Sus scrofa OX=9823 GN=SNX22 PE=3 SV=1 CANONICAL=A0A5G2QCP6-1" }, "locus": { "chromosome": "1", "start_pos": 107897480, "end_pos": 107893543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067746.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067746.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059809.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059809.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624664", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0V0-1", "protein_name": "Sorting nexin 22", "gene_name": "Snx22", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLEVHIPSVGPEAEGPRQSPEKGHMVFQVEVLYSGRRHTVPRRYSEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQGLETYIQGVLYLNQDVPKELLEFLRLRHFPTDSKASSWSTLGEFLPSDTSSQLHHRPVIGFCLDPYIHTPSPAPLPEVVVDGVLQGLYGFGTSTSPAAAQPEANCHPAPSPMP", "length": 194 }, "evidence": [ { "id": "A0A5G2QCP6", "url": "https://omabrowser.org/oma/group/A0A5G2QCP6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96L94-1", "protein_name": "Sorting nexin-22", "gene_name": "SNX22", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVNGVLQGLYSFSISPDKAQPKAACHPAPLPPMP", "length": 193 }, "evidence": [ { "id": "A0A5G2QCP6", "url": "https://omabrowser.org/oma/group/A0A5G2QCP6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylinositol phosphate binding", "id": "GO:1901981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "pmid": "" }, { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 193, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP6" }, { "id": "PS50195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PX", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 118, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCP9-1", "uniprot_ac": "A0A5G2QCP9", "uniprot_id": "A0A5G2QCP9_PIG", "mass": { "chemical_mass": 6638.0, "monoisotopic_mass": 6638.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QCP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047402", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047402", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "YPRACTVWEQTSSSLAPHLTEIFFFFAKDVKFMSRKFAKMLIRWESGKVRCCTLML", "length": 56, "header": "tr|A0A5G2QCP9-1|A0A5G2QCP9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCP9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9/entry", "sequence": { "sequence": "YPRACTVWEQTSSSLAPHLTEIFFFFAKDVKFMSRKFAKMLIRWESGKVRCCTLML", "length": 56, "header": "tr|A0A5G2QCP9-1|A0A5G2QCP9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCP9-1" }, "locus": { "chromosome": "6", "start_pos": 90107736, "end_pos": 90106504, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081086.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081086.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062361.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062361.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCP9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 56, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCP9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCP9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCQ1-1", "uniprot_ac": "A0A5G2QCQ1", "uniprot_id": "A0A5G2QCQ1_PIG", "mass": { "chemical_mass": 148736.0, "monoisotopic_mass": 148736.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QCQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QCQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCQ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCQ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046391", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046391", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QCQ1-1|A0A5G2QCQ1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCQ1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QCQ1-1|A0A5G2QCQ1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCQ1-1" }, "locus": { "chromosome": "5", "start_pos": 81688102, "end_pos": 81684287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084105.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084105.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061890.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCQ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCQ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCQ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCQ1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCS7-1", "uniprot_ac": "A0A5G2QCS7", "uniprot_id": "A0A5G2QCS7_PIG", "mass": { "chemical_mass": 12645.0, "monoisotopic_mass": 12645.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCS7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046976", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046976", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPWFGSLGSGFGRSLGQVGGSVASFTGHILNVTEAVMRKGDEQGPEGAYDAGLGSRASEWHSGTGKIPQVGLLARPGDEPDVWGKVTLDRNSIRCQAWVHPGRPSWPTLTRNSSLGLDS", "length": 120, "header": "tr|A0A5G2QCS7-1|A0A5G2QCS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCS7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7/entry", "sequence": { "sequence": "MAPWFGSLGSGFGRSLGQVGGSVASFTGHILNVTEAVMRKGDEQGPEGAYDAGLGSRASEWHSGTGKIPQVGLLARPGDEPDVWGKVTLDRNSIRCQAWVHPGRPSWPTLTRNSSLGLDS", "length": 120, "header": "tr|A0A5G2QCS7-1|A0A5G2QCS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCS7-1" }, "locus": { "chromosome": "AEMK02000390.1", "start_pos": 37649, "end_pos": 37290, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071002.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071002.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059839.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059839.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCS7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCS7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCS7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 32, "end_pos": 34 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCW8-1", "uniprot_ac": "A0A5G2QCW8", "uniprot_id": "A0A5G2QCW8_PIG", "mass": { "chemical_mass": 23278.0, "monoisotopic_mass": 23278.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "C-type lectin domain family 20 member A", "type": "recommended", "evidence": [ { "id": "A0A5G2QCW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QCW8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046103", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046103", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QCW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TPPVATQSASIRPAPPASLLTPAGSAPPGRPPVLQEVIGSPLTFISSPSLSSTLWASAHRGVATPPGSATSSQSRSAEPPGSEENTLEPSGSGSSAGPQRAVTHSEWAAPSQAAHLETPGSRLGPETAVTSEKSGTYTRDTATATQAQHLSSSHQPDSKEETPAPKPAQLFGILKADFIIPVLMDPEDMKDQFLNEIQEALKLTLGQEKFRLKWVGFEENKK", "length": 222, "header": "tr|A0A5G2QCW8-1|A0A5G2QCW8_PIG Isoform 1 of C-type lectin domain family 20 member A OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCW8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8/entry", "sequence": { "sequence": "TPPVATQSASIRPAPPASLLTPAGSAPPGRPPVLQEVIGSPLTFISSPSLSSTLWASAHRGVATPPGSATSSQSRSAEPPGSEENTLEPSGSGSSAGPQRAVTHSEWAAPSQAAHLETPGSRLGPETAVTSEKSGTYTRDTATATQAQHLSSSHQPDSKEETPAPKPAQLFGILKADFIIPVLMDPEDMKDQFLNEIQEALKLTLGQEKFRLKWVGFEENKK", "length": 222, "header": "tr|A0A5G2QCW8-1|A0A5G2QCW8_PIG Isoform 1 of C-type lectin domain family 20 member A OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QCW8-1" }, "locus": { "chromosome": "9", "start_pos": 120337543, "end_pos": 120330482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079489.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079489.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061965.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061965.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 222, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCW8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QCY2-1", "uniprot_ac": "A0A5G2QCY2", "uniprot_id": "A0A5G2QCY2_PIG", "mass": { "chemical_mass": 20903.0, "monoisotopic_mass": 20903.0 }, "refseq": {}, "gene_names": [ { "name": "DNAJC5G", "type": "recommended", "evidence": [ { "id": "A0A5G2QCY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" } ] } ], "protein_names": [ { "name": "DnaJ heat shock protein family (Hsp40) member C5 gamma", "type": "synonym", "evidence": [ { "id": "A0A5G2QCY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJC5G", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2", "locus": { "chromosome": "3", "start_pos": 111853664, "end_pos": 111857677, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000043825", "url": "https://www.ensembl.org/id/ENSSSCG00000043825" } ] } } ], "crossref": [ { "id": "A0A5G2QCY2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043825", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043825", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051434", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051434", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44027:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44027:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHVEEAARRLSKTGSTLYAVLELKKGASPEDVKKAYRRLALKYHPDKNPGDPQAAEIFKEINTAHAVLSDPKKRKIYDRHGSLGIYIYDHFGEEGVTYYFTLNSCWFKMLLLPHILGTLVLLCALLTCCCCCCCCCFCCGTLRPPPEEVAKRRYEPNVQNQPPRSGHREHFRRGNDNSSDDSY", "length": 184, "header": "tr|A0A5G2QCY2-1|A0A5G2QCY2_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member C5 gamma OS=Sus scrofa OX=9823 GN=DNAJC5G PE=4 SV=1 CANONICAL=A0A5G2QCY2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2/entry", "sequence": { "sequence": "MAHVEEAARRLSKTGSTLYAVLELKKGASPEDVKKAYRRLALKYHPDKNPGDPQAAEIFKEINTAHAVLSDPKKRKIYDRHGSLGIYIYDHFGEEGVTYYFTLNSCWFKMLLLPHILGTLVLLCALLTCCCCCCCCCFCCGTLRPPPEEVAKRRYEPNVQNQPPRSGHREHFRRGNDNSSDDSY", "length": 184, "header": "tr|A0A5G2QCY2-1|A0A5G2QCY2_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member C5 gamma OS=Sus scrofa OX=9823 GN=DNAJC5G PE=4 SV=1 CANONICAL=A0A5G2QCY2-1" }, "locus": { "chromosome": "3", "start_pos": 111856455, "end_pos": 111854960, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076645.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076645.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061980.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061980.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QCY2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QCY2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QCY2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QCY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCY2" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 82, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD11-1", "uniprot_ac": "A0A5G2QD11", "uniprot_id": "A0A5G2QD11_PIG", "mass": { "chemical_mass": 41845.0, "monoisotopic_mass": 41845.0 }, "refseq": {}, "gene_names": [ { "name": "SUN5", "type": "recommended", "evidence": [ { "id": "A0A5G2QD11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ] } ], "protein_names": [ { "name": "Sad1 and UNC84 domain containing 5", "type": "synonym", "evidence": [ { "id": "A0A5G2QD11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SUN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11", "locus": { "chromosome": "17", "start_pos": 36508100, "end_pos": 36528298, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007256", "url": "https://www.ensembl.org/id/ENSSSCG00000007256" } ] } } ], "crossref": [ { "id": "A0A5G2QD11", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD11", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007256", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007256", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR012919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12911:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12911:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSPRSPGDSCDPPRDVAHVPREIRPRRIIQRGRNICRMAEEPLSNTSDAVLLPIRISVPAPGLTQCMLGCMSWIACLVCFLRTQAHQVLFNNCRCRLLFHKLMEKTGVLVLCAFGFWVFSMHLPSKLEVWQVSISCSHSFLIRMYQEKLIAKLQEMEAMSDEQKMAQKIMKMIQGDYIEKPDFALKSIGATIDFEQTSATYNHDKARSYWNWIRLWNYAQPPDVILEPNVTPGNCWAFAGDRGQVTIRLAQKVYLSNLTLQHIPKTISLSGSLDTAPKDFVIYGMEGSPREEVFLGAFQFQPENIIQMFQLQNQPPRTFGAVKVKISSNWGNPRFTCLYRVRVHGSVTPPREQPHQTPAHPKRD", "length": 366, "header": "tr|A0A5G2QD11-1|A0A5G2QD11_PIG Isoform 1 of Sad1 and UNC84 domain containing 5 OS=Sus scrofa OX=9823 GN=SUN5 PE=4 SV=1 CANONICAL=A0A5G2QD11-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11/entry", "sequence": { "sequence": "MPRSPRSPGDSCDPPRDVAHVPREIRPRRIIQRGRNICRMAEEPLSNTSDAVLLPIRISVPAPGLTQCMLGCMSWIACLVCFLRTQAHQVLFNNCRCRLLFHKLMEKTGVLVLCAFGFWVFSMHLPSKLEVWQVSISCSHSFLIRMYQEKLIAKLQEMEAMSDEQKMAQKIMKMIQGDYIEKPDFALKSIGATIDFEQTSATYNHDKARSYWNWIRLWNYAQPPDVILEPNVTPGNCWAFAGDRGQVTIRLAQKVYLSNLTLQHIPKTISLSGSLDTAPKDFVIYGMEGSPREEVFLGAFQFQPENIIQMFQLQNQPPRTFGAVKVKISSNWGNPRFTCLYRVRVHGSVTPPREQPHQTPAHPKRD", "length": 366, "header": "tr|A0A5G2QD11-1|A0A5G2QD11_PIG Isoform 1 of Sad1 and UNC84 domain containing 5 OS=Sus scrofa OX=9823 GN=SUN5 PE=4 SV=1 CANONICAL=A0A5G2QD11-1" }, "locus": { "chromosome": "17", "start_pos": 36528052, "end_pos": 36508572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075074.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075074.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061471.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061471.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" }, { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" }, { "name": "meiotic nuclear membrane microtubule tethering complex", "id": "GO:0034993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034993", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" }, { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043495", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 366, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD11-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD11" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QD11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD11" }, { "id": "PS51469", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51469" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SUN", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 350, "start_aa": "Gly", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 231, "end_pos": 233 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD25-1", "uniprot_ac": "A0A5G2QD25", "uniprot_id": "A0A5G2QD25_PIG", "mass": { "chemical_mass": 38383.0, "monoisotopic_mass": 38383.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM271", "type": "recommended", "evidence": [ { "id": "A0A5G2QD25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25" } ] } ], "protein_names": [ { "name": "Transmembrane protein 271", "type": "synonym", "evidence": [ { "id": "A0A5G2QD25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM271", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25", "locus": { "chromosome": "8", "start_pos": 63322, "end_pos": 64452, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000043358", "url": "https://www.ensembl.org/id/ENSSSCG00000043358" } ] } } ], "crossref": [ { "id": "A0A5G2QD25", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD25", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043358", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043358", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QD25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKWSVRGACAALSSCLLLACALSAAAVGLKCFSLGSELRGEPFRLGAAAGAFYSGLLLAAGLSLLGAALLCCGPRDAPLAGPGPGPGLGVSTAPAGAPEAAPGEPGSAGGPSGPVNSQNLLLLGVLVFMLGVLSAFAGAVIDGDTVSLVERKYSHYCLPPRAPAAAPGPAPGTAAAAPGPAPGAPRGRSTLDSATSAKCRQLKDYQRGLVLSTVFNSLECLLGLLSLLLVKNYKSSQARRGRRGRRRGGRALGRPRGGPGFRVQPPASRARRSRRGRRGRRLQPRPSEASILSPEESDFAAPGDCAGFAAHHAVSYINVGVFHAFDEAGVEVCCGGHPSVELPGYAPSDPDLNASYPYCCRPPCEAARPWEPSRAC", "length": 376, "header": "tr|A0A5G2QD25-1|A0A5G2QD25_PIG Isoform 1 of Transmembrane protein 271 OS=Sus scrofa OX=9823 GN=TMEM271 PE=4 SV=1 CANONICAL=A0A5G2QD25-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25/entry", "sequence": { "sequence": "MKWSVRGACAALSSCLLLACALSAAAVGLKCFSLGSELRGEPFRLGAAAGAFYSGLLLAAGLSLLGAALLCCGPRDAPLAGPGPGPGLGVSTAPAGAPEAAPGEPGSAGGPSGPVNSQNLLLLGVLVFMLGVLSAFAGAVIDGDTVSLVERKYSHYCLPPRAPAAAPGPAPGTAAAAPGPAPGAPRGRSTLDSATSAKCRQLKDYQRGLVLSTVFNSLECLLGLLSLLLVKNYKSSQARRGRRGRRRGGRALGRPRGGPGFRVQPPASRARRSRRGRRGRRLQPRPSEASILSPEESDFAAPGDCAGFAAHHAVSYINVGVFHAFDEAGVEVCCGGHPSVELPGYAPSDPDLNASYPYCCRPPCEAARPWEPSRAC", "length": 376, "header": "tr|A0A5G2QD25-1|A0A5G2QD25_PIG Isoform 1 of Transmembrane protein 271 OS=Sus scrofa OX=9823 GN=TMEM271 PE=4 SV=1 CANONICAL=A0A5G2QD25-1" }, "locus": { "chromosome": "8", "start_pos": 64452, "end_pos": 63325, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081659.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081659.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061486.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061486.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD25-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 376, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD25-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD25" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 353, "end_pos": 355 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD69-1", "uniprot_ac": "A0A5G2QD69", "uniprot_id": "A0A5G2QD69_PIG", "mass": { "chemical_mass": 40365.0, "monoisotopic_mass": 40365.0 }, "refseq": {}, "gene_names": [ { "name": "WDR86", "type": "recommended", "evidence": [ { "id": "A0A5G2QD69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69" } ] } ], "protein_names": [ { "name": "WD repeat domain 86", "type": "synonym", "evidence": [ { "id": "A0A5G2QD69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69", "locus": { "chromosome": "18", "start_pos": 5888590, "end_pos": 5865730, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016437", "url": "https://www.ensembl.org/id/ENSSSCG00000016437" } ] } } ], "crossref": [ { "id": "A0A5G2QD69", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD69", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016437", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016437", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44489:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44489:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGGGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGALRRVFRGHAFIINCIQVHGQVLYTASHDGALRLWDVRGLRRAAPPKRSLSRLFSNKVGCAAAAPLQPA", "length": 374, "header": "tr|A0A5G2QD69-1|A0A5G2QD69_PIG Isoform 1 of WD repeat domain 86 OS=Sus scrofa OX=9823 GN=WDR86 PE=4 SV=2 CANONICAL=A0A5G2QD69-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69/entry", "sequence": { "sequence": "MGGGGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEPLRVFREHQGSIICLELVNRHVYSGSADRTVKCWLADTGERVRTFAAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGALRRVFRGHAFIINCIQVHGQVLYTASHDGALRLWDVRGLRRAAPPKRSLSRLFSNKVGCAAAAPLQPA", "length": 374, "header": "tr|A0A5G2QD69-1|A0A5G2QD69_PIG Isoform 1 of WD repeat domain 86 OS=Sus scrofa OX=9823 GN=WDR86 PE=4 SV=2 CANONICAL=A0A5G2QD69-1" }, "locus": { "chromosome": "18", "start_pos": 5888587, "end_pos": 5866159, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076696.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076696.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062076.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062076.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD69-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 374, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD69-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD69" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD81-1", "uniprot_ac": "A0A5G2QD81", "uniprot_id": "A0A5G2QD81_PIG", "mass": { "chemical_mass": 11082.0, "monoisotopic_mass": 11082.0 }, "refseq": {}, "gene_names": [ { "name": "HELLS", "type": "recommended", "evidence": [ { "id": "A0A5G2QD81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81" } ] } ], "protein_names": [ { "name": "Helicase, lymphoid specific", "type": "synonym", "evidence": [ { "id": "A0A5G2QD81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HELLS", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81", "locus": { "chromosome": "14", "start_pos": 105924536, "end_pos": 105955430, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010486", "url": "https://www.ensembl.org/id/ENSSSCG00000010486" } ] } } ], "crossref": [ { "id": "A0A5G2QD81", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010486", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010486", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR47161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47161:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47161:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QD81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAQQPASSGGSLAPDMVEQAETAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESVDIRYRRLQHLLEKSNIYSKFLLTKMEQQQLESMKI", "length": 96, "header": "tr|A0A5G2QD81-1|A0A5G2QD81_PIG Isoform 1 of Helicase, lymphoid specific OS=Sus scrofa OX=9823 GN=HELLS PE=4 SV=1 CANONICAL=A0A5G2QD81-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81/entry", "sequence": { "sequence": "MPAQQPASSGGSLAPDMVEQAETAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESVDIRYRRLQHLLEKSNIYSKFLLTKMEQQQLESMKI", "length": 96, "header": "tr|A0A5G2QD81-1|A0A5G2QD81_PIG Isoform 1 of Helicase, lymphoid specific OS=Sus scrofa OX=9823 GN=HELLS PE=4 SV=1 CANONICAL=A0A5G2QD81-1" }, "locus": { "chromosome": "14", "start_pos": 105966854, "end_pos": 105959024, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084470.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084470.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061556.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061556.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 96, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD81" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD82-1", "uniprot_ac": "A0A5G2QD82", "uniprot_id": "A0A5G2QD82_PIG", "mass": { "chemical_mass": 36968.0, "monoisotopic_mass": 36968.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QD82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82", "locus": {} } ], "crossref": [ { "id": "A0A5G2QD82", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049034", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049034", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QD82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PLRHDGNSNVTIFNSSEPKWKERFKISIRIDGRGLDPGAVLHFQRITFALQAASYRGFHSFYEEIKNTPPPILATTKNLFLALAETIAQTLKVSSCYICGGINTGDHCPWQARELDPLEPHNETAYPQLTDGVWLLRTAIIGRNCLARRGGRFNVSVGSLTCLGLRYYNLTAQKTQWWSSSNRSEPKPNPLSNFSLLRQAWEDISTNIQRRAPKGLYWICEKMAYSILPPNWAGAYVLGTIRPSFFLLPLSLGEKLGVPIYRAQGAQRDRRALQIGDWKDDKMAPRKNNSILWACHLSRGWLLGISHPCLYAEVHYQTTGGFGTYNK", "length": 327, "header": "tr|A0A5G2QD82-1|A0A5G2QD82_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QD82-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82/entry", "sequence": { "sequence": "PLRHDGNSNVTIFNSSEPKWKERFKISIRIDGRGLDPGAVLHFQRITFALQAASYRGFHSFYEEIKNTPPPILATTKNLFLALAETIAQTLKVSSCYICGGINTGDHCPWQARELDPLEPHNETAYPQLTDGVWLLRTAIIGRNCLARRGGRFNVSVGSLTCLGLRYYNLTAQKTQWWSSSNRSEPKPNPLSNFSLLRQAWEDISTNIQRRAPKGLYWICEKMAYSILPPNWAGAYVLGTIRPSFFLLPLSLGEKLGVPIYRAQGAQRDRRALQIGDWKDDKMAPRKNNSILWACHLSRGWLLGISHPCLYAEVHYQTTGGFGTYNK", "length": 327, "header": "tr|A0A5G2QD82-1|A0A5G2QD82_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QD82-1" }, "locus": { "chromosome": "7", "start_pos": 91452535, "end_pos": 91452406, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072108.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072108.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062566.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 327, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD82" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 14, "end_pos": 16 }, { "start_pos": 154, "end_pos": 156 }, { "start_pos": 169, "end_pos": 171 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 193, "end_pos": 195 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD89-1", "uniprot_ac": "A0A5G2QD89", "uniprot_id": "A0A5G2QD89_PIG", "mass": { "chemical_mass": 31272.0, "monoisotopic_mass": 31272.0 }, "refseq": {}, "gene_names": [ { "name": "SPATS1", "type": "recommended", "evidence": [ { "id": "A0A5G2QD89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89" } ] } ], "protein_names": [ { "name": "Spermatosis associated serine rich 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QD89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPATS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89", "locus": { "chromosome": "7", "start_pos": 39384194, "end_pos": 39352652, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039903", "url": "https://www.ensembl.org/id/ENSSSCG00000039903" } ] } } ], "crossref": [ { "id": "A0A5G2QD89", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD89", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039903", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039903", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR35845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35845:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35845:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QD89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JKS1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JKS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JKS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JKS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ASSCSNSAFYFGKCSWLLKEDNIHQAPGPEKELCTKRNDFLESQGGFANTTSSGRSVSPSSSVEKGLSVNGSAHLGPAADLDLKSSSSHSDHSSETSLPEVPKDKYPQEFSLLQLQTKDGQRPEWTFYPRFSNNIHTYHVGKQCCFKGVFLGNRRSLSERTVDKCLGKKKYDIDPRNGIPKLTPGDNPYMCPEQSKDFYKAGSTLPPVNFSIVPYEKKPDTFIPLEPLPQIPSLPFWVKEKANKLKNEIREVEELENWQPAVPFLHSLLPAGSLDFSRQS", "length": 280, "header": "tr|A0A5G2QD89-1|A0A5G2QD89_PIG Isoform 1 of Spermatosis associated serine rich 1 OS=Sus scrofa OX=9823 GN=SPATS1 PE=4 SV=1 CANONICAL=A0A5G2QD89-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89/entry", "sequence": { "sequence": "ASSCSNSAFYFGKCSWLLKEDNIHQAPGPEKELCTKRNDFLESQGGFANTTSSGRSVSPSSSVEKGLSVNGSAHLGPAADLDLKSSSSHSDHSSETSLPEVPKDKYPQEFSLLQLQTKDGQRPEWTFYPRFSNNIHTYHVGKQCCFKGVFLGNRRSLSERTVDKCLGKKKYDIDPRNGIPKLTPGDNPYMCPEQSKDFYKAGSTLPPVNFSIVPYEKKPDTFIPLEPLPQIPSLPFWVKEKANKLKNEIREVEELENWQPAVPFLHSLLPAGSLDFSRQS", "length": 280, "header": "tr|A0A5G2QD89-1|A0A5G2QD89_PIG Isoform 1 of Spermatosis associated serine rich 1 OS=Sus scrofa OX=9823 GN=SPATS1 PE=4 SV=1 CANONICAL=A0A5G2QD89-1" }, "locus": { "chromosome": "7", "start_pos": 39381787, "end_pos": 39352718, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085025.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085025.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060015.1" } ] } }, { "isoform_ac": "A0A8D1JKS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JKS1/entry", "sequence": { "sequence": "SQTSTGGEGLKTQRGREGTSRWTGREPGGGTKRNDFLESQGGFANTTSSGRSVSPSSSVEKGLSVNGSAHLGPAADLDLKSSSSHSDHSSETSLPEVPKDKYPQEFSLLQLQTKDGQRPEWTFYPRFSNNIHTYHVGKQCCFKGVFLGNRRSLSERTVDKCLGKKKYDIDPRNGIPKLTPGDNPYMCPEQSKDFYKAGSTLPPVNFSIVPYEKKPDTFIPLEPLPQIPSLPFWVKEKANKLKNEIREVEELENWQPAVPFLHSLLPAGGSKDHQKIV", "length": 277, "header": "tr|A0A8D1JKS1-1|A0A8D1JKS1_PIG Computationally mapped isoform of Spermatosis associated serine rich 1 OS=Sus scrofa OX=9823 GN=SPATS1 PE=4 SV=1 CANONICAL=A0A5G2QD89-1" }, "locus": { "chromosome": "7", "start_pos": 39381575, "end_pos": 39353291, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048349.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048349.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051267.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051267.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD89-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 280, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD89-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD89" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 49, "end_pos": 51 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDB0-1", "uniprot_ac": "A0A5G2QDB0", "uniprot_id": "A0A5G2QDB0_PIG", "mass": { "chemical_mass": 11252.0, "monoisotopic_mass": 11252.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDB0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QDB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFLYPATLLNLLISSSSFYVESLEFSICRIMSSAHSDNFTSSFPVWIPFISFVCLIAVAKTSNTMLNKNGERGHPCLVPDFSRKYFSFSLLSIILAVGLS", "length": 101, "header": "tr|A0A5G2QDB0-1|A0A5G2QDB0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDB0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0/entry", "sequence": { "sequence": "MLFLYPATLLNLLISSSSFYVESLEFSICRIMSSAHSDNFTSSFPVWIPFISFVCLIAVAKTSNTMLNKNGERGHPCLVPDFSRKYFSFSLLSIILAVGLS", "length": 101, "header": "tr|A0A5G2QDB0-1|A0A5G2QDB0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDB0-1" }, "locus": { "chromosome": "5", "start_pos": 78734499, "end_pos": 78734197, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090572.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090572.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061591.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDB0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDB0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDB0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 39, "end_pos": 41 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDC0-1", "uniprot_ac": "A0A5G2QDC0", "uniprot_id": "A0A5G2QDC0_PIG", "mass": { "chemical_mass": 13771.0, "monoisotopic_mass": 13771.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDC0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QDC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSRIARANASSMFSFLRHLHTVFYNGCTNLQSHQQHNRIPFSPHPLQHLLFVDFLMMAILAGVRWYLTVVWICISLIMSDVEHLFMCFSAICMSSLENCLFRSSALFDGVVCFFWY", "length": 118, "header": "tr|A0A5G2QDC0-1|A0A5G2QDC0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDC0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0/entry", "sequence": { "sequence": "MPRSRIARANASSMFSFLRHLHTVFYNGCTNLQSHQQHNRIPFSPHPLQHLLFVDFLMMAILAGVRWYLTVVWICISLIMSDVEHLFMCFSAICMSSLENCLFRSSALFDGVVCFFWY", "length": 118, "header": "tr|A0A5G2QDC0-1|A0A5G2QDC0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDC0-1" }, "locus": { "chromosome": "1", "start_pos": 65558418, "end_pos": 65558065, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066651.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066651.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062136.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062136.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 118, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDC0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDC6-1", "uniprot_ac": "A0A5G2QDC6", "uniprot_id": "A0A5G2QDC6_PIG", "mass": { "chemical_mass": 135746.0, "monoisotopic_mass": 135746.0 }, "refseq": {}, "gene_names": [ { "name": "MTUS1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ] } ], "protein_names": [ { "name": "Microtubule associated scaffold protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QDC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTUS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6", "locus": { "chromosome": "17", "start_pos": 5329750, "end_pos": 5507119, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040013", "url": "https://www.ensembl.org/id/ENSSSCG00000040013" } ] } } ], "crossref": [ { "id": "A0A5G2QDC6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040013", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040013", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24200", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24200", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24200:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24200:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27558", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27558", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVS1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TLD0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TLD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TLD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TLD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNDDNSDDKTEDKLQSLYIGDGNGNTYAYNQKSPPTQNSSTNNVSWNSANPDDMVVDYETSSAVDIGETISLNPQSVDVLDHQKSSNDFLSKETLDIYKGSACQSFACVRNSEEPKYLHNSCHSLESFQDQSVETSLPFAWKRNKDDLTLCRVTADDSSALALNQTFDMKMDNIHDTFVVHPNIEKSQALPTGTRNGNTSLSCSLPTFSHADEIHVRETHCDKDCFENPQARASESQDTSYTAFSEVVMQTDVVVPDIGSECHCSSEKVTSEYPDGAQQRLGREKEIQALTPVSDGMDVSSGSVLQEFFCSSKDEPKSEMHSWSSYGQKEMGQNLRETVSNCLIDDECSLLVPTFDNSTTQVLDPEHQVTVAKDTPVASNGKDSGTQNHTIEWVLNGSMAGQKVASSFELSWDTDNMAIGTNNLIGMSTPILEPTKASFSISPIDLTDKCSKIPKSNRELRNLPNLKGAQMNMSKPTLGKSTTKTNTPVGSKVRSTEIISYPRPNFKNVKAKVISRRVLQPKDPALSEAIPTSQLTGTSLPSSVSSSRQVTVLNKTPTSDLNAEPKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHKLPRATSAMKSNQEDVDKASSSNSACESGPVAAFFQKIKGELPVKMESTECVEMTYTSNIDGISPEKKGEKENGTLMAKQQLKKEIMNETFDCGSLFLGSAPKRATISGRNITKPNSSILRKIPVPKAKVGPSISCWRRNSDSRNLNSDRTLSPQRIRLVPSSAGNATVVKFEEKPPKPAFQNGTSGSLYLKPLVPRAHAHLLKTPSKGPSRKSLFTAFNGVEKGRQKNARSLCIQTQTSPDVLSSEKTLELAQFKTKCEKQSGCILQLKQLLSCGNAKFEALTVVIQHLLSEREEALKQHKALSQELVNLRGELVTASTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNAAHETSKLEIEASHSEKIELLKKAYETSLSEIKKSHEMEKKSLEDVLYEKQESLEKQIDDLKTENDALNEKLKSEEQKRVSREKADSKSPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQPRNSGSFPSPSISPR", "length": 1219, "header": "tr|A0A5G2QDC6-1|A0A5G2QDC6_PIG Isoform 1 of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=3 SV=1 CANONICAL=A0A5G2QDC6-1" }, "isoforms": [ { "isoform_ac": "A0A287AVS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS1/entry", "sequence": { "sequence": "MTIPGGFRSCTETDTSSKIFINSTLTPPAGSERHYDATLLTLLVLGSYSLCIVPLLATFTGKRTGNATVVKFEEKPPKPAFQNGTSGSLYLKPLVPRAHAHLLKTPSKGPSRKSLFTAFNGVEKGRQKNARSLCIQTQTSPDVLSSEKTLELAQFKTKCEKQSGCILQLKQLLSCGNAKFEALTVVIQHLLSEREEALKQHKALSQELVNLRGELVTASTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNAAHETSKLEIEASHSEKIELLKKAYETSLSEIKKSHEMEKKSLEDVLYEKQESLEKQIDDLKTENDALNEKLKSEEQKRVSREKADSKSPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQSRGTPAPSPAPASHPDDPPGSRETD", "length": 530, "header": "tr|A0A287AVS1-1|A0A287AVS1_PIG Computationally mapped isoform of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=3 SV=3 CANONICAL=A0A5G2QDC6-1" }, "locus": { "chromosome": "17", "start_pos": 5418167, "end_pos": 5331785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044810.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044810.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048220.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048220.3" } ] } }, { "isoform_ac": "A0A5G2QDC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6/entry", "sequence": { "sequence": "MNDDNSDDKTEDKLQSLYIGDGNGNTYAYNQKSPPTQNSSTNNVSWNSANPDDMVVDYETSSAVDIGETISLNPQSVDVLDHQKSSNDFLSKETLDIYKGSACQSFACVRNSEEPKYLHNSCHSLESFQDQSVETSLPFAWKRNKDDLTLCRVTADDSSALALNQTFDMKMDNIHDTFVVHPNIEKSQALPTGTRNGNTSLSCSLPTFSHADEIHVRETHCDKDCFENPQARASESQDTSYTAFSEVVMQTDVVVPDIGSECHCSSEKVTSEYPDGAQQRLGREKEIQALTPVSDGMDVSSGSVLQEFFCSSKDEPKSEMHSWSSYGQKEMGQNLRETVSNCLIDDECSLLVPTFDNSTTQVLDPEHQVTVAKDTPVASNGKDSGTQNHTIEWVLNGSMAGQKVASSFELSWDTDNMAIGTNNLIGMSTPILEPTKASFSISPIDLTDKCSKIPKSNRELRNLPNLKGAQMNMSKPTLGKSTTKTNTPVGSKVRSTEIISYPRPNFKNVKAKVISRRVLQPKDPALSEAIPTSQLTGTSLPSSVSSSRQVTVLNKTPTSDLNAEPKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHKLPRATSAMKSNQEDVDKASSSNSACESGPVAAFFQKIKGELPVKMESTECVEMTYTSNIDGISPEKKGEKENGTLMAKQQLKKEIMNETFDCGSLFLGSAPKRATISGRNITKPNSSILRKIPVPKAKVGPSISCWRRNSDSRNLNSDRTLSPQRIRLVPSSAGNATVVKFEEKPPKPAFQNGTSGSLYLKPLVPRAHAHLLKTPSKGPSRKSLFTAFNGVEKGRQKNARSLCIQTQTSPDVLSSEKTLELAQFKTKCEKQSGCILQLKQLLSCGNAKFEALTVVIQHLLSEREEALKQHKALSQELVNLRGELVTASTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNAAHETSKLEIEASHSEKIELLKKAYETSLSEIKKSHEMEKKSLEDVLYEKQESLEKQIDDLKTENDALNEKLKSEEQKRVSREKADSKSPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQPRNSGSFPSPSISPR", "length": 1219, "header": "tr|A0A5G2QDC6-1|A0A5G2QDC6_PIG Isoform 1 of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=3 SV=1 CANONICAL=A0A5G2QDC6-1" }, "locus": { "chromosome": "17", "start_pos": 5451625, "end_pos": 5331813, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088107.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088107.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061611.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061611.1" } ] } }, { "isoform_ac": "A0A5G2QYH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH4/entry", "sequence": { "sequence": "MGCSGSKMCLYPPCAATRREEALKQHKALSQELVNLRGELVTASTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNAAHETSKLEIEASHSEKIELLKKAYETSLSEIKKSHEMEKKSLEDVLYEKQESLEKQIDDLKTENDALNEKLKSEEQKRVSREKADSKSPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQPRNSGSFPSPSISPR", "length": 345, "header": "tr|A0A5G2QYH4-1|A0A5G2QYH4_PIG Computationally mapped isoform of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=3 SV=1 CANONICAL=A0A5G2QDC6-1" }, "locus": { "chromosome": "17", "start_pos": 5360129, "end_pos": 5331813, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072717.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072717.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069928.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069928.1" } ] } }, { "isoform_ac": "A0A5G2QYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU3/entry", "sequence": { "sequence": "MLLSPKFSLSTIHVRLTAKGLLRNLHFLQVEKGRQKNARSLCIQTQTSPDVLSSEKTLELAQFKTKCEKQSGCILQLKQLLSCGNAKFEALTVVIQHLLSEREEALKQHKALSQELVNLRGELVTASTTCEKLEKARNELQIAYEGFVQKLNQQHQTDLTELENRLKEFYTGECEKLQNIYIEEAEKYKTQLQEQFDNLNAAHETSKLEIEASHSEKIELLKKAYETSLSEIKKSHEMEKKSLEDVLYEKQESLEKQIDDLKTENDALNEKLKSEEQKRVSREKADSKSPQIMYLEQELESLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSPKRSPTSPAIPFQSRGTPAPSPAPASHPDDPPGSRETD", "length": 438, "header": "tr|A0A5G2QYU3-1|A0A5G2QYU3_PIG Computationally mapped isoform of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=3 SV=1 CANONICAL=A0A5G2QDC6-1" }, "locus": { "chromosome": "17", "start_pos": 5386841, "end_pos": 5331785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076977.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076977.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070081.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070081.1" } ] } }, { "isoform_ac": "A0A8D0TLD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TLD0/entry", "sequence": { "sequence": "MGCSGSKMCLYPPCAATRREEALKQHKALSQELVNLRGELAW", "length": 42, "header": "tr|A0A8D0TLD0-1|A0A8D0TLD0_PIG Computationally mapped isoform of Microtubule associated scaffold protein 1 OS=Sus scrofa OX=9823 GN=MTUS1 PE=4 SV=1 CANONICAL=A0A5G2QDC6-1" }, "locus": { "chromosome": "17", "start_pos": 5360129, "end_pos": 5358847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087016.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087016.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060299.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060299.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of macrophage chemotaxis", "id": "GO:0010758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010758", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1120, "end_pos": 1122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 554, "end_pos": 556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" }, { "start_pos": 687, "end_pos": 689, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1219, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDC6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1120, "end_pos": 1122 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 388, "end_pos": 390 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 554, "end_pos": 556 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 672, "end_pos": 674 }, { "start_pos": 687, "end_pos": 689 }, { "start_pos": 710, "end_pos": 712 }, { "start_pos": 715, "end_pos": 717 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 782, "end_pos": 784 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDF7-1", "uniprot_ac": "A0A5G2QDF7", "uniprot_id": "A0A5G2QDF7_PIG", "mass": { "chemical_mass": 99589.0, "monoisotopic_mass": 99589.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QDF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QDF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050253", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050253", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEI", "length": 852, "header": "tr|A0A5G2QDF7-1|A0A5G2QDF7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QDF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEI", "length": 852, "header": "tr|A0A5G2QDF7-1|A0A5G2QDF7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QDF7-1" }, "locus": { "chromosome": "1", "start_pos": 125257525, "end_pos": 125254970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091024.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091024.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061651.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 852, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDF7" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 621, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 316, "end_pos": 318 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDG8-1", "uniprot_ac": "A0A5G2QDG8", "uniprot_id": "A0A5G2QDG8_PIG", "mass": { "chemical_mass": 47892.0, "monoisotopic_mass": 47892.0 }, "refseq": { "ac": "XP_013853631", "name": "zinc finger protein 1 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853631" }, "gene_names": [ { "name": "ZFP1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ] }, { "name": "ZFP1", "type": "synonym", "evidence": [ { "id": "XP_013853631", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853631" } ] } ], "protein_names": [ { "name": "Zinc finger protein 1 homolog", "type": "recommended", "evidence": [ { "id": "A0A5G2QDG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013853631", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853631" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8", "locus": { "chromosome": "6", "start_pos": 12480278, "end_pos": 12531530, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022668", "url": "https://www.ensembl.org/id/ENSSSCG00000022668" } ] } } ], "crossref": [ { "id": "A0A5G2QDG8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022668", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022668", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100622002", "url": "https://www.ncbi.nlm.nih.gov/gene/100622002", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DEYNGFG", "url": "https://omabrowser.org/oma/group/DEYNGFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QDG8", "url": "https://www.orthodb.org/?gene=A0A5G2QDG8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013853631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853631", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIM1", "url": "https://www.uniprot.org/uniprotkb/I3LIM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIM1-1", "url": "https://www.uniprot.org/uniprotkb/I3LIM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKSEGSVSFTDVTVDFTQEEWEQLDPSQRILYMDVMLENYSNLLSVEVWKADDQMEKDHRNPDEQARPFIIFKNQTPIEERDHHLFGKTFNLSTDFVSLRQVPYKYDLYEKTLRYNSDLLNSNRSYLRKKADDCNGFGKALLYVKQEKPHTGMDYPEYSKSGKAFSHKEAIFKHQKIRNLVQPFICNYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQRIHTGEKPFECLECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRVHTGDKP", "length": 408, "header": "tr|A0A5G2QDG8-1|A0A5G2QDG8_PIG Isoform 1 of Zinc finger protein 1 homolog OS=Sus scrofa OX=9823 GN=ZFP1 PE=3 SV=2 CANONICAL=A0A5G2QDG8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8/entry", "sequence": { "sequence": "MSKSEGSVSFTDVTVDFTQEEWEQLDPSQRILYMDVMLENYSNLLSVEVWKADDQMEKDHRNPDEQARPFIIFKNQTPIEERDHHLFGKTFNLSTDFVSLRQVPYKYDLYEKTLRYNSDLLNSNRSYLRKKADDCNGFGKALLYVKQEKPHTGMDYPEYSKSGKAFSHKEAIFKHQKIRNLVQPFICNYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQRIHTGEKPFECLECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRVHTGDKP", "length": 408, "header": "tr|A0A5G2QDG8-1|A0A5G2QDG8_PIG Isoform 1 of Zinc finger protein 1 homolog OS=Sus scrofa OX=9823 GN=ZFP1 PE=3 SV=2 CANONICAL=A0A5G2QDG8-1" }, "locus": { "chromosome": "6", "start_pos": 12524437, "end_pos": 12483207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081786.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081786.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062181.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062181.2" } ] } }, { "isoform_ac": "I3LIM1-1", "url": "https://www.uniprot.org/uniprotkb/I3LIM1/entry", "sequence": { "sequence": "MSKSERYGRLMTRWRRTTETQMSRQGHL", "length": 28, "header": "tr|I3LIM1-1|I3LIM1_PIG Computationally mapped isoform of ZFP1 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP1 PE=4 SV=3 CANONICAL=A0A5G2QDG8-1" }, "locus": { "chromosome": "6", "start_pos": 12524437, "end_pos": 12484220, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031098.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031098.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023927.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023927.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M426-1", "protein_name": "Zinc finger protein 1", "gene_name": "Zfp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQHHHLADGIPAFLYVRLFMVQSSCAFVLLCLYPNPENDGVPGQGTSVRILPTSKYMHPDYTFWNWRDQRMSVGTQSDFNQAAMSHLASGSVSFTDVTVDFSQEEWEQLDPSQRILYMDVMLENYSNLLSVEVWKADDQVEKDPREPDKQAPSLTTPKNQPPTEERGSLFGKRLNLNTDLVSLRQVPYKYYLYGKTLMYNSDLLSSRSCVVEKGDECGGLGEPLLYLKQEKPHAGLQYSEYNGNGRSLSHTDAIFKHQKIKSLVQPFVCNYCDKAFSFKSLLVSHKRIHTGEKPYECNVCQKTFSHKANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVHQRAHMAKKPYGCNECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHRRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECAECGKAFSRKSRLSVHQRVHMG", "length": 487 }, "evidence": [ { "id": "A0A5G2QDG8", "url": "https://omabrowser.org/oma/group/A0A5G2QDG8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P2D0-1", "protein_name": "Zinc finger protein 1 homolog", "gene_name": "ZFP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNKSQGSVSFTDVTVDFTQEEWEQLDPSQRILYMDVMLENYSNLLSVEVWKADDQMERDHRNPDEQARQFLILKNQTPIEERGDLFGKALNLNTDFVSLRQVPYKYDLYEKTLKYNSDLLNSNRSYAGKQTDECNEFGKALLYLKQEKTHSGVEYSEYNKSGKALSHKAAIFKHQKIKNLVQPFICTYCDKAFSFKSLLISHKRIHTGEKPYECNVCKKTFSHKANLIKHQRIHTGEKPFECPECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKPYECSECGKAFSRKSRLSVHQRVHIGEKP", "length": 407 }, "evidence": [ { "id": "A0A5G2QDG8", "url": "https://omabrowser.org/oma/group/A0A5G2QDG8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 212, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QDG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDG8" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 83, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 75, "end_pos": 77 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDH1-1", "uniprot_ac": "A0A5G2QDH1", "uniprot_id": "A0A5G2QDH1_PIG", "mass": { "chemical_mass": 17514.0, "monoisotopic_mass": 17514.0 }, "refseq": {}, "gene_names": [ { "name": "PMAP-23", "type": "recommended", "evidence": [ { "id": "A0A5G2QDH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ] } ], "protein_names": [ { "name": "Antibacterial protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PMAP-23", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1", "locus": { "chromosome": "13", "start_pos": 30961514, "end_pos": 30959616, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047135", "url": "https://www.ensembl.org/id/ENSSSCG00000047135" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10206:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00666", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00666", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSVRIIDLLWRVRRPQKPKFVTVWVR", "length": 153, "header": "tr|A0A5G2QDH1-1|A0A5G2QDH1_PIG Isoform 1 of Antibacterial protein OS=Sus scrofa OX=9823 GN=PMAP-23 PE=3 SV=2 CANONICAL=A0A5G2QDH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1/entry", "sequence": { "sequence": "METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSVRIIDLLWRVRRPQKPKFVTVWVR", "length": 153, "header": "tr|A0A5G2QDH1-1|A0A5G2QDH1_PIG Isoform 1 of Antibacterial protein OS=Sus scrofa OX=9823 GN=PMAP-23 PE=3 SV=2 CANONICAL=A0A5G2QDH1-1" }, "locus": { "chromosome": "13", "start_pos": 30961409, "end_pos": 30959815, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089135.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089135.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062672.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062672.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" }, { "name": "defense response to Gram-negative bacterium", "id": "GO:0050829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" }, { "name": "defense response to Gram-positive bacterium", "id": "GO:0050830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050830", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" }, { "name": "antimicrobial humoral immune response mediated by antimicrobial peptide", "id": "GO:0061844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061844", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipopolysaccharide binding", "id": "GO:0001530", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001530", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDJ1-1", "uniprot_ac": "A0A5G2QDJ1", "uniprot_id": "A0A5G2QDJ1_PIG", "mass": { "chemical_mass": 50439.0, "monoisotopic_mass": 50439.0 }, "refseq": { "ac": "XP_003122873", "name": "rho GTPase-activating protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122873" }, "gene_names": [ { "name": "ARHGAP1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ] }, { "name": "ARHGAP1", "type": "synonym", "evidence": [ { "id": "XP_003122873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122873" } ] } ], "protein_names": [ { "name": "Rho GTPase activating protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QDJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003122873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122873" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1", "locus": { "chromosome": "2", "start_pos": 15854179, "end_pos": 15834703, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013256", "url": "https://www.ensembl.org/id/ENSSSCG00000013256" } ] } } ], "crossref": [ { "id": "A0A5G2QDJ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013256", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013256", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04404", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04404", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515942", "url": "https://www.ncbi.nlm.nih.gov/gene/100515942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515942", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SHNPDCD", "url": "https://omabrowser.org/oma/group/SHNPDCD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QDJ1", "url": "https://www.orthodb.org/?gene=A0A5G2QDJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SIA4", "url": "https://www.orthodb.org/?gene=F1SIA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45808", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45808", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45808:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45808:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013406", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013409", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122873", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AZG0", "url": "https://www.uniprot.org/uniprotkb/A0A287AZG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIA4", "url": "https://www.uniprot.org/uniprotkb/F1SIA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIA4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPLSELQDDLTVDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPDQEPIPLVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLSIDESQRVQATLQVFQTLPEENYLVLRFLTAFLVQISALCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDAKGL", "length": 439, "header": "tr|A0A5G2QDJ1-1|A0A5G2QDJ1_PIG Isoform 1 of Rho GTPase activating protein 1 OS=Sus scrofa OX=9823 GN=ARHGAP1 PE=1 SV=1 CANONICAL=A0A5G2QDJ1-1" }, "isoforms": [ { "isoform_ac": "A0A287AZG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZG0/entry", "sequence": { "sequence": "MDPLSELQDDLTVDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKPTPEVLFCLCRYKKNIKALYIVHPTMFIKTLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPDQEPIPLVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLSIDESQRVQATLQVFQTLPEENYLVLRFLTAFLVQISALCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDAKGL", "length": 450, "header": "tr|A0A287AZG0-1|A0A287AZG0_PIG Computationally mapped isoform of Rho GTPase activating protein 1 OS=Sus scrofa OX=9823 GN=ARHGAP1 PE=1 SV=2 CANONICAL=A0A5G2QDJ1-1" }, "locus": { "chromosome": "2", "start_pos": 15852748, "end_pos": 15838991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056878.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056878.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049547.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049547.2" } ] } }, { "isoform_ac": "A0A5G2QDJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1/entry", "sequence": { "sequence": "MDPLSELQDDLTVDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPDQEPIPLVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLSIDESQRVQATLQVFQTLPEENYLVLRFLTAFLVQISALCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDAKGL", "length": 439, "header": "tr|A0A5G2QDJ1-1|A0A5G2QDJ1_PIG Isoform 1 of Rho GTPase activating protein 1 OS=Sus scrofa OX=9823 GN=ARHGAP1 PE=1 SV=1 CANONICAL=A0A5G2QDJ1-1" }, "locus": { "chromosome": "2", "start_pos": 15852748, "end_pos": 15838991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071788.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071788.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061691.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061691.1" } ] } }, { "isoform_ac": "F1SIA4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIA4/entry", "sequence": { "sequence": "MDPLSELQDDLTVDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGCEVPEGAQPGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPDQEPIPLVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLSIDESQRVQATLQVFQTLPEENYLVLRFLTAFLVQISALCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDAKGL", "length": 449, "header": "tr|F1SIA4-1|F1SIA4_PIG Computationally mapped isoform of Rho GTPase activating protein 1 OS=Sus scrofa OX=9823 GN=ARHGAP1 PE=1 SV=3 CANONICAL=A0A5G2QDJ1-1" }, "locus": { "chromosome": "2", "start_pos": 15852748, "end_pos": 15838991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014480.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014480.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014088.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014088.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515942", "resource": "KEGG Pathway" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" }, { "id": "R-SSC-9013409", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "resource": "Reactome", "description": "RHOJ GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYR5-1", "protein_name": "Rho GTPase activating protein 1", "gene_name": "Arhgap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLKDRTGSLEVIAGSGRSTRKAMFGPGSKPEVGRRYGGSGWELRAPEGAVPIPTSEPDVCRALTGVAKGALPERGELQSAGSHWAWWLLFWFSLAMDPLSELQDDLTLDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLREKNPNQEPIPIVLRETVAYLQAHALTAEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHIVGFLDLDDDQRVEVTQQVLQTLPEENYRVLHFLTAFLVQVSAHSYQNRMNNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSTDAQGV", "length": 535 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZTR7-1", "protein_name": "Rho GTPase activating protein 1", "gene_name": "ARHGAP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATDPLSELQDDLNLDDTNQSLSQLKLASIDDKNWLADEDPAFPKSEDSKGSPEAVTHLRWDDPYYDIARHHIVEVAGDDKYGRKVILFSACRMPPSHQLDHVKLLGYLKFTLDQYVESDYTLVYLHHGLTSENKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGRKIFYVNFLSELEEYVKLEQLGIPSQVLKYDEYLRSLQKPLQVPQKPTPPRPPLPNQQFGVSLQHLREKSPDQSPVPLVVRETIAHLQEHALTTEGIFRRSANTQVVKEVQQKYNMDFQQYEDVHLPAVILKTFLRELPEPLLTFGLYSHIVSFQSVEEVNRVDVVRKTLQNLPEENYHVLRLLTAFLVQVSAHSDRNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQKELFEDVEA", "length": 433 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6RWK1-1", "protein_name": "Rho GTPase activating protein 1", "gene_name": "ARHGAP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPLSELQDDLTLDDPSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSFSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQQLREKNPEQQPIPLVLRETVAYLRAHALTTEGIFRRSANTQVVREVQHKYNMGLSVDFEQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLNIDESQRVKATLQALQTLPEENYLVLRFLTAFLVQISALSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDAKGL", "length": 439 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GYJ1-1", "protein_name": "Rho GTPase-activating protein 1", "gene_name": "Arhgap1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDPLSELQDDLTLDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPDQVPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVEVTQQALQTLPEENYQVLRFLTAFLVQVSAHCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSTDAQGV", "length": 439 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q07960-1", "protein_name": "Rho GTPase-activating protein 1", "gene_name": "ARHGAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPLSELQDDLTLDDTSEALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPELVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSPDPSGL", "length": 439 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5FWK3-1", "protein_name": "Rho GTPase-activating protein 1", "gene_name": "Arhgap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPLSELQDDLTLDDTSQALNQLKLASIDEKNWPSDEMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVEVTQQVLQTLPEENYQVLHFLTAFLVQISAHCDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELFPSTDAQGV", "length": 439 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTU3-1", "protein_name": "Rho GTPase-activating protein 68F", "gene_name": "RhoGAP68F", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDAHSRFAPRLPGPAINPIVDNSDEPQPSLSDLHDFEPKLEFDDTELLAPSPLEKDVMVGDFVLAEDPELEPEEDVNPLEDDFEDQLREQSENFQTPRNKCDFLGTDKQGRHIFGIYASRFPEKSQLEGFVREIIKEIEPFVENDYILVYFHQGLKEDNKPSAQFLWNSYKELDRNFRKNLKTLYVVHPTWFIRVIWNFFSPFISDKFRKKLVYISSLDELRQALGLNKLKLPDNICDLDDKLNPSRKPSTPPPSSNINASRQQQHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDLKSVNVHVIAGLLKSFLRDLAEPLLTFELYEDVTGFLDWPKEERSRNVTQLIREKLPEENYELFKYIVEFLVRVMDCEDLNKMTSSNLAIVFGPNFLWSRSTSTSLEEIAPINAFVDFVLQNHKDIYLIDVNQRTVSVD", "length": 476 }, "evidence": [ { "id": "A0A5G2QDJ1", "url": "https://omabrowser.org/oma/group/A0A5G2QDJ1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "plasma membrane bounded cell projection", "id": "GO:0120025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120025", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "sorting endosome", "id": "GO:0097443", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097443", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "negative regulation of endocytic recycling", "id": "GO:2001136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001136", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" }, { "name": "transferrin transport", "id": "GO:0033572", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033572", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDJ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 439, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDJ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDJ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 218, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QDJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ1" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 244, "end_pos": 431, "start_aa": "Val", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDJ9-1", "uniprot_ac": "A0A5G2QDJ9", "uniprot_id": "A0A5G2QDJ9_PIG", "mass": { "chemical_mass": 22820.0, "monoisotopic_mass": 22820.0 }, "refseq": { "ac": "XP_013852260", "name": "myelin protein zero-like protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852260" }, "gene_names": [ { "name": "MPZL1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ] }, { "name": "MPZL1", "type": "synonym", "evidence": [ { "id": "XP_013852260", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852260" } ] } ], "protein_names": [ { "name": "Myelin protein zero like 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QDJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9/entry#names_and_taxonomy" } ] }, { "name": "myelin protein zero-like protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013852260", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852260" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MPZL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9", "locus": { "chromosome": "4", "start_pos": 83235714, "end_pos": 83316405, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006306", "url": "https://www.ensembl.org/id/ENSSSCG00000006306" } ] } } ], "crossref": [ { "id": "A0A5G2QDJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006306", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006306", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05715", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153553", "url": "https://www.ncbi.nlm.nih.gov/gene/100153553", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QDJ9", "url": "https://www.orthodb.org/?gene=A0A5G2QDJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13869:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13869:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852260", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852260", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPU6", "url": "https://www.uniprot.org/uniprotkb/F1RPU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPAGARALIAAPDRGRWLWSVLVAALGLLTAGGSALEVYTPKEIFVANGTQGKLPCKFKSANMTGTLTSVSWSFQPEGTDSTVSFFHYSQGQVYAGNYPPFKDRISWAGDLEKKDASINIENIQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKEILPAFPVWGVVGIVTAVVLGLTLLITMILAVLYRRKNSKRDYTGAQSYMHS", "length": 209, "header": "tr|A0A5G2QDJ9-1|A0A5G2QDJ9_PIG Isoform 1 of Myelin protein zero like 1 OS=Sus scrofa OX=9823 GN=MPZL1 PE=1 SV=1 CANONICAL=A0A5G2QDJ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9/entry", "sequence": { "sequence": "MAAPAGARALIAAPDRGRWLWSVLVAALGLLTAGGSALEVYTPKEIFVANGTQGKLPCKFKSANMTGTLTSVSWSFQPEGTDSTVSFFHYSQGQVYAGNYPPFKDRISWAGDLEKKDASINIENIQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKEILPAFPVWGVVGIVTAVVLGLTLLITMILAVLYRRKNSKRDYTGAQSYMHS", "length": 209, "header": "tr|A0A5G2QDJ9-1|A0A5G2QDJ9_PIG Isoform 1 of Myelin protein zero like 1 OS=Sus scrofa OX=9823 GN=MPZL1 PE=1 SV=1 CANONICAL=A0A5G2QDJ9-1" }, "locus": { "chromosome": "4", "start_pos": 83309423, "end_pos": 83237949, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071261.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071261.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060130.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060130.1" } ] } }, { "isoform_ac": "A0A5G2RGT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT9/entry", "sequence": { "sequence": "MAAPAGARALIAAPDRGRWLWSVLVAALGLLTAGGSALEVYTPKEIFVANGTQGKLPCKFKSANMTGTLTSVSWSFQPEGTDSTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN", "length": 119, "header": "tr|A0A5G2RGT9-1|A0A5G2RGT9_PIG Computationally mapped isoform of Myelin protein zero like 1 OS=Sus scrofa OX=9823 GN=MPZL1 PE=1 SV=1 CANONICAL=A0A5G2QDJ9-1" }, "locus": { "chromosome": "4", "start_pos": 83309423, "end_pos": 83237872, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081100.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081100.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070475.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070475.1" } ] } }, { "isoform_ac": "F1RPU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPU6/entry", "sequence": { "sequence": "MAAPAGARALIAAPDRGRWLWSVLVAALGLLTAGGSALEVYTPKEIFVANGTQGKLPCKFKSANMTGTLTSVSWSFQPEGTDSTVSFFHYSQGQVYAGNYPPFKDRISWAGDLEKKDASINIENIQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKEILPAFPVWGVVGIVTAVVLGLTLLITMILAVLYRRKNSKRDYTG", "length": 202, "header": "tr|F1RPU6-1|F1RPU6_PIG Computationally mapped isoform of Myelin protein zero like 1 OS=Sus scrofa OX=9823 GN=MPZL1 PE=1 SV=2 CANONICAL=A0A5G2QDJ9-1" }, "locus": { "chromosome": "4", "start_pos": 83309423, "end_pos": 83252477, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006911.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006911.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006723.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006723.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDJ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 209, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDJ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDJ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ9" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 146, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDL5-1", "uniprot_ac": "A0A5G2QDL5", "uniprot_id": "A0A5G2QDL5_PIG", "mass": { "chemical_mass": 59605.0, "monoisotopic_mass": 59605.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "CCHC-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QDL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000043578", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043578", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEIILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSRRGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTGLVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPLTRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLMEAFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRRETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSGNLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD", "length": 524, "header": "tr|A0A5G2QDL5-1|A0A5G2QDL5_PIG Isoform 1 of CCHC-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDL5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5/entry", "sequence": { "sequence": "MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEIILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSRRGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTGLVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPLTRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLMEAFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRRETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSGNLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD", "length": 524, "header": "tr|A0A5G2QDL5-1|A0A5G2QDL5_PIG Isoform 1 of CCHC-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDL5-1" }, "locus": { "chromosome": "AEMK02000197.1", "start_pos": 16482, "end_pos": 14911, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067533.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067533.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060150.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060150.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDL5" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 493, "end_pos": 508, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 448, "end_pos": 450 }, { "start_pos": 484, "end_pos": 486 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDM3-1", "uniprot_ac": "A0A5G2QDM3", "uniprot_id": "A0A5G2QDM3_PIG", "mass": { "chemical_mass": 14876.0, "monoisotopic_mass": 14876.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050212", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050212", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QDM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSRIAGSYGNSIFSFWRNRHTVFHSGCTNLHSQQSKGIPFSPHPLQHLLFVDFLMMAILAGVRWYLIMVLICISLIMTDVEHLFMWFLAICVSSSLENCLFSSSAHFLMGLFVFWYGAAEGVYIFWR", "length": 129, "header": "tr|A0A5G2QDM3-1|A0A5G2QDM3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDM3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3/entry", "sequence": { "sequence": "MPKSRIAGSYGNSIFSFWRNRHTVFHSGCTNLHSQQSKGIPFSPHPLQHLLFVDFLMMAILAGVRWYLIMVLICISLIMTDVEHLFMWFLAICVSSSLENCLFSSSAHFLMGLFVFWYGAAEGVYIFWR", "length": 129, "header": "tr|A0A5G2QDM3-1|A0A5G2QDM3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDM3-1" }, "locus": { "chromosome": "3", "start_pos": 21890432, "end_pos": 21890046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072121.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072121.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060155.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060155.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDM3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDM3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDM3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDM6-1", "uniprot_ac": "A0A5G2QDM6", "uniprot_id": "A0A5G2QDM6_PIG", "mass": { "chemical_mass": 14387.0, "monoisotopic_mass": 14387.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDM6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043805", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043805", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QDM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTGMRWYLMIVLICISLIIRDVERCFKCLLSICISSLEKCLFRSFAHFSIGWLAFLLLSYISCLYILEIKPLSVASFETIFSHSVSCLFVFFLVSFAVQKIVSLIMSHWFIFDFISVALGD", "length": 125, "header": "tr|A0A5G2QDM6-1|A0A5G2QDM6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDM6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6/entry", "sequence": { "sequence": "MMAILTGMRWYLMIVLICISLIIRDVERCFKCLLSICISSLEKCLFRSFAHFSIGWLAFLLLSYISCLYILEIKPLSVASFETIFSHSVSCLFVFFLVSFAVQKIVSLIMSHWFIFDFISVALGD", "length": 125, "header": "tr|A0A5G2QDM6-1|A0A5G2QDM6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDM6-1" }, "locus": { "chromosome": "11", "start_pos": 39195097, "end_pos": 39194723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069319.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069319.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061731.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061731.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 125, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDM6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDQ9-1", "uniprot_ac": "A0A5G2QDQ9", "uniprot_id": "A0A5G2QDQ9_PIG", "mass": { "chemical_mass": 67417.0, "monoisotopic_mass": 67417.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Tigger transposable element-derived protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRKLGLLRQTVSQVVNAKEKFLKEIKSATPVNTRMIRKRNSLIADMEKVLVVWIEDQTSHNIPLSQSLIRSKALTLFNSMKAERGAEAAEEKFEASRGWFMRFKERSRLHTVKVQGEAANADVEAASSYPDLVKIIKEGGYTKQQIFNVDETALYWKKMPSRTFIAREEKSMLGFKASKDRLTLLLGANAAGDLKLKPMLIYHSENPKALKNYAKSTLPVLYKWNHKAWMTSHLFTTWFTDYFKPTVENYCSEKKIPFKILLLIDNAPGHPRALMEMYNEINVVFMPANTMSILQPMDQGVISTFKSYYLRNTFRKAIAAIDSDSSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVQISTLTGVWKKLIPTLMDDFEGFKTSVEEVTADVVEIARELELEVEPEDVTELLQSHDKTLTDEELLLMDEQRKWFIEAESTGEDAVKIVEMTTKDLEYYINLVDKAAAGFERIDSNFERSSTVGKMLSNSIACYREIVHERKSQLMWQTSLLSYFKKLPHHPQSSATTTLISQQPSTSRQDPPPAKRLRLAEGPDDC", "length": 591, "header": "tr|A0A5G2QDQ9-1|A0A5G2QDQ9_PIG Isoform 1 of Tigger transposable element-derived protein 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QDQ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9/entry", "sequence": { "sequence": "MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRKLGLLRQTVSQVVNAKEKFLKEIKSATPVNTRMIRKRNSLIADMEKVLVVWIEDQTSHNIPLSQSLIRSKALTLFNSMKAERGAEAAEEKFEASRGWFMRFKERSRLHTVKVQGEAANADVEAASSYPDLVKIIKEGGYTKQQIFNVDETALYWKKMPSRTFIAREEKSMLGFKASKDRLTLLLGANAAGDLKLKPMLIYHSENPKALKNYAKSTLPVLYKWNHKAWMTSHLFTTWFTDYFKPTVENYCSEKKIPFKILLLIDNAPGHPRALMEMYNEINVVFMPANTMSILQPMDQGVISTFKSYYLRNTFRKAIAAIDSDSSDGSGQSKLKTFWKGFTILDAIKNIRDSWEEVQISTLTGVWKKLIPTLMDDFEGFKTSVEEVTADVVEIARELELEVEPEDVTELLQSHDKTLTDEELLLMDEQRKWFIEAESTGEDAVKIVEMTTKDLEYYINLVDKAAAGFERIDSNFERSSTVGKMLSNSIACYREIVHERKSQLMWQTSLLSYFKKLPHHPQSSATTTLISQQPSTSRQDPPPAKRLRLAEGPDDC", "length": 591, "header": "tr|A0A5G2QDQ9-1|A0A5G2QDQ9_PIG Isoform 1 of Tigger transposable element-derived protein 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QDQ9-1" }, "locus": { "chromosome": "1", "start_pos": 145814677, "end_pos": 145812905, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059808.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059808.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062767.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062767.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDQ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDQ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDQ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" }, { "id": "PRU00320", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00320" } ], "ann_type": "Nucleotide_Binding_Annotation", "uniprotkb_annotation": "H-T-H motif", "eco_id": "ECO_0000256", "start_pos": 33, "end_pos": 53, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QDQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" }, { "id": "PS51253", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51253" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH CENPB-type", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 149, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QDQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDQ9" }, { "id": "PS50960", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50960" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH psq-type", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 57, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDS7-1", "uniprot_ac": "A0A5G2QDS7", "uniprot_id": "A0A5G2QDS7_PIG", "mass": { "chemical_mass": 8306.0, "monoisotopic_mass": 8306.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDS7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051377", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051377", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QDS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQQSHSWAYIWTKLSLKKDTCICMFIATLFTIAKTWKQPKCPSTDKWIRKMWYIYTLEYYSAIKRTK", "length": 68, "header": "tr|A0A5G2QDS7-1|A0A5G2QDS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDS7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7/entry", "sequence": { "sequence": "MTQQSHSWAYIWTKLSLKKDTCICMFIATLFTIAKTWKQPKCPSTDKWIRKMWYIYTLEYYSAIKRTK", "length": 68, "header": "tr|A0A5G2QDS7-1|A0A5G2QDS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDS7-1" }, "locus": { "chromosome": "15", "start_pos": 18955041, "end_pos": 18954838, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072891.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072891.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061792.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061792.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDS7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 68, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDS7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDS7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDU6-1", "uniprot_ac": "A0A5G2QDU6", "uniprot_id": "A0A5G2QDU6_PIG", "mass": { "chemical_mass": 45404.0, "monoisotopic_mass": 45404.0 }, "refseq": {}, "gene_names": [ { "name": "PYGO1", "type": "recommended", "evidence": [ { "id": "A0A5G2QDU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ] } ], "protein_names": [ { "name": "Pygopus family PHD finger 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QDU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in signal transduction through the Wnt pathway.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6#function" }, { "database": "UniProtKB", "id": "ARBA00037400", "url": "https://www.uniprot.org/uniprotkb/ARBA00037400#function" }, { "database": "UniProtKB", "id": "F1RZF2", "url": "https://www.uniprot.org/uniprotkb/F1RZF2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PYGO1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6", "locus": { "chromosome": "1", "start_pos": 116322375, "end_pos": 116292642, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004607", "url": "https://www.ensembl.org/id/ENSSSCG00000004607" } ] } } ], "crossref": [ { "id": "A0A5G2QDU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004607", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004607", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15635", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15635", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156479", "url": "https://www.ncbi.nlm.nih.gov/gene/100156479", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156479", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156479", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTHEVND", "url": "https://omabrowser.org/oma/group/CTHEVND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZF2", "url": "https://www.orthodb.org/?gene=F1RZF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23194", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23194", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23194:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23194:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-201722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZF2", "url": "https://www.uniprot.org/uniprotkb/F1RZF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZF2-1", "url": "https://www.uniprot.org/uniprotkb/F1RZF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TPAKNSPAPAYKVCSDRGDSGLDGLGGPGVQLGSPDKKKRKTNTQGPSFPPLSEYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPAENFNQIPPQNASQVSNPDLASNFVPGNNSNFTSPLEPNHSFIPPPNTFGQAKPPPQKQDFSQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNVVNQENSRSNSTEATNNSHANGTQNKPRQPRGATDTCTTEKSNKSSLHPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGAPAVGSDT", "length": 419, "header": "tr|A0A5G2QDU6-1|A0A5G2QDU6_PIG Isoform 1 of Pygopus family PHD finger 1 OS=Sus scrofa OX=9823 GN=PYGO1 PE=4 SV=1 CANONICAL=A0A5G2QDU6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6/entry", "sequence": { "sequence": "TPAKNSPAPAYKVCSDRGDSGLDGLGGPGVQLGSPDKKKRKTNTQGPSFPPLSEYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPAENFNQIPPQNASQVSNPDLASNFVPGNNSNFTSPLEPNHSFIPPPNTFGQAKPPPQKQDFSQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNVVNQENSRSNSTEATNNSHANGTQNKPRQPRGATDTCTTEKSNKSSLHPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGAPAVGSDT", "length": 419, "header": "tr|A0A5G2QDU6-1|A0A5G2QDU6_PIG Isoform 1 of Pygopus family PHD finger 1 OS=Sus scrofa OX=9823 GN=PYGO1 PE=4 SV=1 CANONICAL=A0A5G2QDU6-1" }, "locus": { "chromosome": "1", "start_pos": 116319327, "end_pos": 116292642, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068573.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068573.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061812.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061812.1" } ] } }, { "isoform_ac": "F1RZF2-1", "url": "https://www.uniprot.org/uniprotkb/F1RZF2/entry", "sequence": { "sequence": "MSAEQEKDPISLKRVRGGDSGLDGLGGPGVQLGSPDKKKRKTNTQGPSFPPLSEYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPAENFNQIPPQNASQVSNPDLASNFVPGNNSNFTSPLEPNHSFIPPPNTFGQAKPPPQKQDFSQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNVVNQENSRSNSTEATNNSHANGTQNKPRQPRGATDTCTTEKSNKSSLHPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGAPAVGSDT", "length": 419, "header": "tr|F1RZF2-1|F1RZF2_PIG Computationally mapped isoform of Pygopus family PHD finger 1 OS=Sus scrofa OX=9823 GN=PYGO1 PE=4 SV=2 CANONICAL=A0A5G2QDU6-1" }, "locus": { "chromosome": "1", "start_pos": 116319327, "end_pos": 116293620, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005088.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005088.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004964.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156479", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156479", "resource": "KEGG Pathway" }, { "id": "R-SSC-201722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "resource": "Reactome", "description": "Formation of the beta-catenin:TCF transactivating complex" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LT21-1", "protein_name": "Protogenin", "gene_name": "PRTG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPSLRPLARPRPPGMLLGALLLLPLLGRVPGVWCFSELVFIKEPQDITVTRKDPVVLDCQAHGEVPIKVTWLKNGAKVSENKRIQVLSNGSLYISEVEGKRGEQYDEGFYQCLAMNRHGAILSQKAHLTLSTISAFEVQPISIEVREGGVARFACKISSNPPAAITWELNRTTLSVTMDSDRITALPTGVLQIYDVDQRDAGNYRCVAATIAHRRKSMEASLTVIPGKESKSFHTPTIVAGPQNITTSLHQTVVLECVATGNPKPIISWSRLDHKSIDVFNTRVLGNGNLMISDIRLQHAGVYVCRATTPGTRNFTVATATLTVLAPPSFVEWPESLTRPRAGTARFVCQAEGIPSPKMSWLKNGRKIHSNGRIKMYNSKLVINQIIPEDDAIYQCMAENSQGSILSRARLTVVMSEDRPSAPYNVHAETMSSSAILLAWERPLYNSDKVIAYSVHYMKAEGLNNEEYQVVIGNDTTHYIIDDLEPASNYTFYIVAYMPMGASQMSDHVIQNTLEDVPLRPPEISLTSRSPTDILVSWLPIPAKYRRGQVVLYRLSFRLSTENSIQVLELPGTTHEHLLEGLKPDSVYLVRITAATRVGLGESSVWTSHRTPKATSVKAPKSPELHLEPLNCTTISVKWQQDAEDTATIQGYKLYYKEEGQQEHGPIFLDTSGLLYTLSGLDPRRKYHVRLLAYNSIEDGYQADQTVSTPGCVSVRDRMVPPPPPPHHLYAKANTSSSIFLHWRRPAFTTAQMINYTIRCNPVGLQNASLVLYLQTSETHMLVQGLEPNTKYEFAVRLHVDQLSSPWSPVVYHSTLPEAPAGPPVGVKVTLIEDDTALVSWRPPDGPETVVTRYTILYASRKAWIAGEWQVLHREGAITMALLENLVAGNIYIVKISASNEVGEGPFSNSVELAVLPKETPESNQRPKRLDSADAKVYSGYYHLDQKSMTGIAVGVGIALTCILICGLILIYRSKARKSTVSKTGQNGTQQLPRISASRASGNEVGKNLEGAIENEESLMPMIMPNSFIDAKGGTDLIINSYGPIIKNTPKKKWLFFQDSKKIKAEQPQRRFTQAVCLYQPGTTILISDEDSPSSPGGDSGLDGLGGPGVQLGSPDKKKRKTNTQGPSFPPLSEYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALTQNVNMPNQHFRQNPAENFNQIPPQNASQVSNPDLASNFVPASNSNFSSPLESNHSFIPPPNTFGQAKAPPPKQDFSQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNVVSQENSRSSSTEATNNSHANGTQSKPRQPRGATDTCTTEKSNKSALHPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPPAVGSDG", "length": 1500 }, "evidence": [ { "id": "A0A5G2QDU6", "url": "https://omabrowser.org/oma/group/A0A5G2QDU6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6AA06-1", "protein_name": "Pygopus family PHD finger 1", "gene_name": "Pygo1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAEQDKEPIALKRVRGGDSGLDGLGGPNIQLGSPDKKKRKASTQGASFPPLSEYAPPPNPNADHLVAANPFDDSYNTISYKPLPSSNPYLSPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYALRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSNFGNPPYNNVLTQDINMPSQHFRQGSAENFSQIPPQNVGQVSNPDLASNFAPGNNSNFNSPLESNHSFIPPPNSFGQAKAPLPKQDFTQGAAKTTNQNSSTHPPHLNMEDPVNQSNVELKNVNRNNVVQENSRSGSAEPTNNHANGTQNKPRQPRGTADLCTTDKSRKFSLHPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTREAFGPPAVGSDA", "length": 417 }, "evidence": [ { "id": "A0A5G2QDU6", "url": "https://omabrowser.org/oma/group/A0A5G2QDU6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BWE1-1", "protein_name": "Pygopus family PHD finger 1", "gene_name": "PYGO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAEQEKDPIALKRSRGGDGGLDGLGGPGVQLGSPDKKKRKANTQGSSFPPPSEYAPPPNPSSDHLVAANPFDDNYNTVSYKPLPSGNPYFSNPGYPGFGGYNTFRMPPHMLHRVSTPYGGSYSLRNQPHPLPQNPVGMGFSRPHSFSFGPHDSPGFGNQPPYSGGQINQNVNMPGQHFRPNPGENFGHSGQIPHPDVPSNFGPGNNSNFPNTQLESSHSFVPPPSTYNQTKSSAQKQDFSQAASKASSQNTAALQHHHRTEDIVSQGNNDLKNVTRNNVVNQDSSHSNSADNTNAGHSNGTQSKSRQPRSTAEGCNSEKSSKTPLHPSRHGHSSSEPVYPCGICTHEVNDDQDAILCEASCQKWFHRICTGMTESAYGLLTAEASAVWGCDTCMADKDVQLMRTRETAGPPALNTDG", "length": 418 }, "evidence": [ { "id": "A0A5G2QDU6", "url": "https://omabrowser.org/oma/group/A0A5G2QDU6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9D0P5-1", "protein_name": "Pygopus homolog 1", "gene_name": "Pygo1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAEQDKEPIALKRVRGGDSGLDGLGGPNIQLGSPDKKKRKANTQGSSFPPLSEYAPPPNPNSDHLVAANPFDDSYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSNFGNPPYNNVLTQDINMPGQHFRQGSAENFSQIPPQNVGQVSNPDLASNFAPGNNSNFTSPLETNHSFIPPPNAFGQAKAPLPKQDFTQGATKTPNQNSSTHPPHLNMEDPVNQSNVELKNVNRNNVVQENSRSGSAEATNNHANGTQNKPRQPRGAADLCTPDKSRKFSLLPSRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTREAFGPPAVGGDA", "length": 417 }, "evidence": [ { "id": "A0A5G2QDU6", "url": "https://omabrowser.org/oma/group/A0A5G2QDU6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3Y4-1", "protein_name": "Pygopus homolog 1", "gene_name": "PYGO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPAENSPAPAYKVSSHGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPNPNSDHLVAANPFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGFNRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPAENFSQIPPQNASQVSNPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQDFTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPANGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA", "length": 419 }, "evidence": [ { "id": "A0A5G2QDU6", "url": "https://omabrowser.org/oma/group/A0A5G2QDU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" }, { "name": "histone H3K4me3 reader activity", "id": "GO:0140002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140002", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "kidney development", "id": "GO:0001822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001822", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" }, { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" }, { "name": "spermatid nucleus differentiation", "id": "GO:0007289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007289", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" }, { "name": "canonical Wnt signaling pathway", "id": "GO:0060070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060070", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 419, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDU6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU6" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 340, "end_pos": 398, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDW5-1", "uniprot_ac": "A0A5G2QDW5", "uniprot_id": "A0A5G2QDW5_PIG", "mass": { "chemical_mass": 35982.0, "monoisotopic_mass": 35982.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Butyrophilin subfamily 2 member A2", "type": "synonym", "evidence": [ { "id": "A0A5G2QDW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDW5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001131", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001131", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05713", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05713", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100:SF139", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100:SF139", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8851680", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8851680", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPVASSHFSLPGSLLFFHLLSSFAPVSVPFTVLGPTDPVLAMVGENTRLPCHLSPEKNAEEMEVRWFRKQFSPAVFVYKGGREKTEMQMKEYRGRTTFVSEDITRGNVALIIHNVTAHDNGDYRCYFQEGRSYDEAITSLKVAGLGSKPIIEMKGHEDGSIRLECTSTGWYPQPHAVWRDPYGEIMPSLDEAYPANADGLFLVTMAVIIRDHSVRNVSCSINNTLLNQEKETVIFIPDSFTPSTSPWMVALAVVLFSAFVSATICLIKKLHREKEIPSVQKEIENEEKEIAQQLQEELRWRRSLLHAGERLRHSLRS", "length": 318, "header": "tr|A0A5G2QDW5-1|A0A5G2QDW5_PIG Isoform 1 of Butyrophilin subfamily 2 member A2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDW5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5/entry", "sequence": { "sequence": "MEPVASSHFSLPGSLLFFHLLSSFAPVSVPFTVLGPTDPVLAMVGENTRLPCHLSPEKNAEEMEVRWFRKQFSPAVFVYKGGREKTEMQMKEYRGRTTFVSEDITRGNVALIIHNVTAHDNGDYRCYFQEGRSYDEAITSLKVAGLGSKPIIEMKGHEDGSIRLECTSTGWYPQPHAVWRDPYGEIMPSLDEAYPANADGLFLVTMAVIIRDHSVRNVSCSINNTLLNQEKETVIFIPDSFTPSTSPWMVALAVVLFSAFVSATICLIKKLHREKEIPSVQKEIENEEKEIAQQLQEELRWRRSLLHAGERLRHSLRS", "length": 318, "header": "tr|A0A5G2QDW5-1|A0A5G2QDW5_PIG Isoform 1 of Butyrophilin subfamily 2 member A2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDW5-1" }, "locus": { "chromosome": "7", "start_pos": 20964557, "end_pos": 20954906, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068859.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068859.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061832.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061832.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 37, "start_aa": "Thr", "end_pos": 37, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr37", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8851680", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8851680", "resource": "Reactome", "description": "Butyrophilin (BTN) family interactions" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "T cell receptor signaling pathway", "id": "GO:0050852", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050852", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDW5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDW5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDW5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 139, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 37 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 223, "end_pos": 225 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDW9-1", "uniprot_ac": "A0A5G2QDW9", "uniprot_id": "A0A5G2QDW9_PIG", "mass": { "chemical_mass": 22311.0, "monoisotopic_mass": 22311.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "BTB domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QDW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046700", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046700", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPAEVTDPSHAPAVLRQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALLASAPLPLPPITGGSAPNPATTTAAASSSSSSSSSSSSSSSSSSSSSPPPLPGVPAAAFSDVLNFIYSARLALPGGGGDGAAVAEIGALGRRLGISRLQGLGEGGDAWIPPAPAPVATSQPEEDSFGPGPRPAGDGKATGSVPQHARFRILQTLALYVVRTQI", "length": 222, "header": "tr|A0A5G2QDW9-1|A0A5G2QDW9_PIG Isoform 1 of BTB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDW9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9/entry", "sequence": { "sequence": "MPPPAEVTDPSHAPAVLRQLNEQRLRGLFCDVTLIAGDTKFPAHRSVLAASSPFFREALLASAPLPLPPITGGSAPNPATTTAAASSSSSSSSSSSSSSSSSSSSSPPPLPGVPAAAFSDVLNFIYSARLALPGGGGDGAAVAEIGALGRRLGISRLQGLGEGGDAWIPPAPAPVATSQPEEDSFGPGPRPAGDGKATGSVPQHARFRILQTLALYVVRTQI", "length": 222, "header": "tr|A0A5G2QDW9-1|A0A5G2QDW9_PIG Isoform 1 of BTB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDW9-1" }, "locus": { "chromosome": "12", "start_pos": 52765541, "end_pos": 52759337, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068429.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068429.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061837.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061837.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 222, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDW9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QDW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDW9" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 134, "start_aa": "Cys", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QDZ4-1", "uniprot_ac": "A0A5G2QDZ4", "uniprot_id": "A0A5G2QDZ4_PIG", "mass": { "chemical_mass": 10992.0, "monoisotopic_mass": 10992.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QDZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QDZ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043100", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043100", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QDZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILYPATWLNLLISSSGFWVESLGFSIYSIMSSAYSDSLISSLPIWMPFISFVCLIAVTRTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLSIIFAVGLS", "length": 101, "header": "tr|A0A5G2QDZ4-1|A0A5G2QDZ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDZ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4/entry", "sequence": { "sequence": "MLILYPATWLNLLISSSGFWVESLGFSIYSIMSSAYSDSLISSLPIWMPFISFVCLIAVTRTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLSIIFAVGLS", "length": 101, "header": "tr|A0A5G2QDZ4-1|A0A5G2QDZ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QDZ4-1" }, "locus": { "chromosome": "9", "start_pos": 84864192, "end_pos": 84863521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081813.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081813.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061862.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061862.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QDZ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QDZ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QDZ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE29-1", "uniprot_ac": "A0A5G2QE29", "uniprot_id": "A0A5G2QE29_PIG", "mass": { "chemical_mass": 13750.0, "monoisotopic_mass": 13750.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QE29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29", "locus": {} } ], "crossref": [ { "id": "A0A5G2QE29", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE29", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QE29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVISSIHVAAKSLFCPLYGQIIFFTHMYHIFLIRSSVDGHLGCFHVLAIVSSAAMNIWVHISFSMKVFSGYKPRSGIAGSYDSFIFSFLRYFHTFFHSGCTSLHSHQQYRKVPFSIHPL", "length": 120, "header": "tr|A0A5G2QE29-1|A0A5G2QE29_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE29-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29/entry", "sequence": { "sequence": "MRVISSIHVAAKSLFCPLYGQIIFFTHMYHIFLIRSSVDGHLGCFHVLAIVSSAAMNIWVHISFSMKVFSGYKPRSGIAGSYDSFIFSFLRYFHTFFHSGCTSLHSHQQYRKVPFSIHPL", "length": 120, "header": "tr|A0A5G2QE29-1|A0A5G2QE29_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE29-1" }, "locus": { "chromosome": "14", "start_pos": 119585137, "end_pos": 119584778, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075179.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075179.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060295.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060295.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QE29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QE29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE29" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE68-1", "uniprot_ac": "A0A5G2QE68", "uniprot_id": "A0A5G2QE68_PIG", "mass": { "chemical_mass": 25522.0, "monoisotopic_mass": 25522.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LINE-1 type transposase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QE68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68", "locus": {} } ], "crossref": [ { "id": "A0A5G2QE68", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE68", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042147", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042147", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQTELRAVKTRMNNAEERISDMEDRIMAITQSGQQTENRIKTLESNIRDLWDNIKRANLHIIGIPEGVEKDKGMENIFEEIIAGKFPNLKDTGFKIQEAQRAPNKLNPNGPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPISLSADFSTETLQTRREWQEIFKVLKGKNMQPRILYPARISFQIEGEIRIFSNKQKLKEYSNTKPRFKEILKGLL", "length": 220, "header": "tr|A0A5G2QE68-1|A0A5G2QE68_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QE68-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68/entry", "sequence": { "sequence": "MQTELRAVKTRMNNAEERISDMEDRIMAITQSGQQTENRIKTLESNIRDLWDNIKRANLHIIGIPEGVEKDKGMENIFEEIIAGKFPNLKDTGFKIQEAQRAPNKLNPNGPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPISLSADFSTETLQTRREWQEIFKVLKGKNMQPRILYPARISFQIEGEIRIFSNKQKLKEYSNTKPRFKEILKGLL", "length": 220, "header": "tr|A0A5G2QE68-1|A0A5G2QE68_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QE68-1" }, "locus": { "chromosome": "X", "start_pos": 49223883, "end_pos": 49223224, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081051.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081051.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062463.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062463.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 112, "start_aa": "Thr", "end_pos": 112, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr112", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QE68-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 220, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QE68-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE68" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QE68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 151, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QE68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE68" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 217, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 112 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE87-1", "uniprot_ac": "A0A5G2QE87", "uniprot_id": "A0A5G2QE87_PIG", "mass": { "chemical_mass": 23055.0, "monoisotopic_mass": 23055.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QE87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87", "locus": {} } ], "crossref": [ { "id": "A0A5G2QE87", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE87", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036017", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036017", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF88", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF88", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE87-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGGSTTPILRALLCLGESDSFPGVLPKPSIRADPGPIVPKGSPVTLWCQGSPQAEVYRLYKVGDSGLWEDEAPQASNTARFHFESLSSRHAGRYQCFRSGILHLLKERGAEPPQCSAWGKLGNSGGRQANFTLSPMTSAHNETYRCYTSQSTSPYVLSNPSDPLQLLISASPPQDYTVGNLVRMATAALILLSLGILLFQARHGHGGTQDATRS", "length": 215, "header": "tr|A0A5G2QE87-1|A0A5G2QE87_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE87-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE87-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87/entry", "sequence": { "sequence": "MGGGSTTPILRALLCLGESDSFPGVLPKPSIRADPGPIVPKGSPVTLWCQGSPQAEVYRLYKVGDSGLWEDEAPQASNTARFHFESLSSRHAGRYQCFRSGILHLLKERGAEPPQCSAWGKLGNSGGRQANFTLSPMTSAHNETYRCYTSQSTSPYVLSNPSDPLQLLISASPPQDYTVGNLVRMATAALILLSLGILLFQARHGHGGTQDATRS", "length": 215, "header": "tr|A0A5G2QE87-1|A0A5G2QE87_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE87-1" }, "locus": { "chromosome": "6", "start_pos": 58632807, "end_pos": 58629404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078166.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078166.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061972.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061972.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response-inhibiting cell surface receptor signaling pathway", "id": "GO:0002767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002767", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "inhibitory MHC class I receptor activity", "id": "GO:0032396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032396", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QE87-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 215, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QE87-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE87" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 131, "end_pos": 133 }, { "start_pos": 142, "end_pos": 144 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE89-1", "uniprot_ac": "A0A5G2QE89", "uniprot_id": "A0A5G2QE89_PIG", "mass": { "chemical_mass": 151079.0, "monoisotopic_mass": 151079.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100737927", "type": "recommended", "evidence": [ { "id": "A0A5G2QE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ] } ], "protein_names": [ { "name": "Guanylate cyclase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100737927", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000001612", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001612", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16305", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16305", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16305:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16305:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFE9", "url": "https://www.uniprot.org/uniprotkb/I3LFE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFE9-1", "url": "https://www.uniprot.org/uniprotkb/I3LFE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVASQILHLCQPVLCVSTGNGLLALWTVEQNQLSDIITLVAKCSLEIQEKFGIYHTREGQDLQLKIGLSAGRISQVIIGDEQRQYLLVIGRDIDGVQLAQRLAQANEIVLSWNCWKLCEQYMFEVEIMREDEAVKVGGWSHLPNAFGLFSFFSDILRTALVLDPDSALEQTLRKHIMKNLLKKIDEGQPMEYISEFRTVTMVLVSLEFHKTAWMLHLCHLIQEAALYISTVIEKGGGQLSRIFMFEKGCMFLCVFGLPGDKKPDECAHALESSFSIFSFCWENLAETKLVSISVTNGPVFCGMVGAVARHEYTVIGPKVSLVARMITAYPGLVSCDEVTYLRSMLPAYNFKKLPEKMMKNISNPGKIYEYLGHRRRIMFGKRHLARERDKNQSLLDREKEVEAFRTAQQGCLHQRKGQAVLYEGRRGYGKSQLLAEINFLAQKEGHRVLPLKLKEADSKHCFYTIQTLMAIFFEIDTCPAYYRQEYLYKQLHGTVEEPLHCLFNDLFFVKFPLSFRVSHMDNPARHRKIKACLLQVETPLIFLIDEAQYMDAASWEFLGTLLSSVPIIMVMTLTPAFTLCGWARHFLQSPQATLVPISKLAATSLLRMACWELGVVSIPQELQTYLLCRCLGNPLYCEVLCQDLLSKNILLFHDLQKEEKENSKWETLSGKLNFPEFYPAYSLLIFFSSEIAVNQLDQLSSEEQLLVKCAAVIGHSFHIDLLQRLLPGWGKSKLLQVLRALVDIHVLHWCNQSQELSLRFASISDAGSPLRLQEEPPLPQTELLEFGVPLLREAAWELWPKTQQAALHLECACFLRALACRCGSCRGGDFIPFHPINVPSQLLLNPDNIKRIAHLISITEEEFLDQVNRKLSQTSPEKDSLTTKPCRCREVLNLVLSPLTRHCLVIGENTCAFYYLLEAAAASLDLSNNYMAFFYLRKASSLLGPPSAFSFFKKHKVKICQFEEATFCSLRSEVCFNMGQITLAKKLARQALRLLRRSFPWTWFGVIFQTFLEKCWRHANHPVLRTSKKKLAVLQQQVHCLSLLRQLYNLEATAFNRRFACLAALMQKNSAKELASEAQVSQCLLYFWTSLRILKCSTERPCQVAIQKSSLCWFSREGLLATAQLMQALAYTKLCLGHLDFSIKLGNGAWGGWAQGFRRGQLLPVPLSLGRFDLCVHVLKSQWALLSQGHDVLGLACFYAACLDLLLYGEGWLCRPFGECLHFIEQYEHSCVLTSQSNVMLGVHSSLAMWFAQDSQWNLFERHFSKARRLVKKTNASLFGSHGFVRFLECHVLMLQKMPEGASKLTPPGTRHQPLQVPVCLPWPSTNT", "length": 1329, "header": "tr|A0A5G2QE89-1|A0A5G2QE89_PIG Isoform 1 of Guanylate cyclase domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737927 PE=4 SV=2 CANONICAL=A0A5G2QE89-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89/entry", "sequence": { "sequence": "MAVASQILHLCQPVLCVSTGNGLLALWTVEQNQLSDIITLVAKCSLEIQEKFGIYHTREGQDLQLKIGLSAGRISQVIIGDEQRQYLLVIGRDIDGVQLAQRLAQANEIVLSWNCWKLCEQYMFEVEIMREDEAVKVGGWSHLPNAFGLFSFFSDILRTALVLDPDSALEQTLRKHIMKNLLKKIDEGQPMEYISEFRTVTMVLVSLEFHKTAWMLHLCHLIQEAALYISTVIEKGGGQLSRIFMFEKGCMFLCVFGLPGDKKPDECAHALESSFSIFSFCWENLAETKLVSISVTNGPVFCGMVGAVARHEYTVIGPKVSLVARMITAYPGLVSCDEVTYLRSMLPAYNFKKLPEKMMKNISNPGKIYEYLGHRRRIMFGKRHLARERDKNQSLLDREKEVEAFRTAQQGCLHQRKGQAVLYEGRRGYGKSQLLAEINFLAQKEGHRVLPLKLKEADSKHCFYTIQTLMAIFFEIDTCPAYYRQEYLYKQLHGTVEEPLHCLFNDLFFVKFPLSFRVSHMDNPARHRKIKACLLQVETPLIFLIDEAQYMDAASWEFLGTLLSSVPIIMVMTLTPAFTLCGWARHFLQSPQATLVPISKLAATSLLRMACWELGVVSIPQELQTYLLCRCLGNPLYCEVLCQDLLSKNILLFHDLQKEEKENSKWETLSGKLNFPEFYPAYSLLIFFSSEIAVNQLDQLSSEEQLLVKCAAVIGHSFHIDLLQRLLPGWGKSKLLQVLRALVDIHVLHWCNQSQELSLRFASISDAGSPLRLQEEPPLPQTELLEFGVPLLREAAWELWPKTQQAALHLECACFLRALACRCGSCRGGDFIPFHPINVPSQLLLNPDNIKRIAHLISITEEEFLDQVNRKLSQTSPEKDSLTTKPCRCREVLNLVLSPLTRHCLVIGENTCAFYYLLEAAAASLDLSNNYMAFFYLRKASSLLGPPSAFSFFKKHKVKICQFEEATFCSLRSEVCFNMGQITLAKKLARQALRLLRRSFPWTWFGVIFQTFLEKCWRHANHPVLRTSKKKLAVLQQQVHCLSLLRQLYNLEATAFNRRFACLAALMQKNSAKELASEAQVSQCLLYFWTSLRILKCSTERPCQVAIQKSSLCWFSREGLLATAQLMQALAYTKLCLGHLDFSIKLGNGAWGGWAQGFRRGQLLPVPLSLGRFDLCVHVLKSQWALLSQGHDVLGLACFYAACLDLLLYGEGWLCRPFGECLHFIEQYEHSCVLTSQSNVMLGVHSSLAMWFAQDSQWNLFERHFSKARRLVKKTNASLFGSHGFVRFLECHVLMLQKMPEGASKLTPPGTRHQPLQVPVCLPWPSTNT", "length": 1329, "header": "tr|A0A5G2QE89-1|A0A5G2QE89_PIG Isoform 1 of Guanylate cyclase domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737927 PE=4 SV=2 CANONICAL=A0A5G2QE89-1" }, "locus": { "chromosome": "7", "start_pos": 36449007, "end_pos": 36415814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076066.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076066.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062969.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062969.2" } ] } }, { "isoform_ac": "I3LFE9-1", "url": "https://www.uniprot.org/uniprotkb/I3LFE9/entry", "sequence": { "sequence": "MTWTNWPTSSAYLISDVLCFGGDILNITGNGLLALWTVEQNQLSDIITLVAKCSLEIQEKFGIYHTREGQDLQLKIGLSAGRISQVIIGDEQRQYLLVIGRDIDGVQLAQRLAQANEIVLSWNCWKLCEQYMFEVEIMREDEAVKVGGWSHLPNVLKRPSYYTGQCSDILRTALVLDPDSALEQTLRKHIMKNLLKKIDEGQPMEYISEFRTVTMVLVSLEFHKTAWMLHLCHLIQEAALYISTVIEKGGGQLSRIFMFEKGCMFLCVFGLPGDKKPDECAHALESSFSIFSFCWENLAETKLVSISVTNGPVFCGMVGAVARHEYTVIGPKVSLVARMITAYPGLVSSLELSHPHCTFPVFIYIDICHNGNSCICFISIH", "length": 381, "header": "tr|I3LFE9-1|I3LFE9_PIG Computationally mapped isoform of Guanylate cyclase domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737927 PE=4 SV=4 CANONICAL=A0A5G2QE89-1" }, "locus": { "chromosome": "7", "start_pos": 36428518, "end_pos": 36411646, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027428.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027428.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022791.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022791.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "adenylate cyclase activity", "id": "GO:0004016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004016", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" }, { "name": "lyase activity", "id": "GO:0016829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" }, { "name": "cyclic nucleotide biosynthetic process", "id": "GO:0009190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009190", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1276, "end_pos": 1278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 752, "end_pos": 754, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE89" }, { "id": "PS50125", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate cyclase", "eco_id": "ECO_0000259", "start_pos": 291, "end_pos": 327, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1276, "end_pos": 1278 }, { "start_pos": 361, "end_pos": 363 }, { "start_pos": 392, "end_pos": 394 }, { "start_pos": 752, "end_pos": 754 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QE96-1", "uniprot_ac": "A0A5G2QE96", "uniprot_id": "A0A5G2QE96_PIG", "mass": { "chemical_mass": 19634.0, "monoisotopic_mass": 19634.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QE96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96", "locus": {} } ], "crossref": [ { "id": "A0A5G2QE96", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045296", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045296", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QE96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSRTAGSYGSSIFSFLRNLHTFFHSGCTNLHSHQQCRRVPSSLHLLQHLLFVDLLMMVILTGVRWHLTVVLTCISLTISDVEHFFMCLMTIHMSSFLFRSSAHFSVGFFGFLLLSYMNYLYILAIKPFTTALSFQGFVFVFMVSFAVQKLVSLIGFHLFLFLFLLPSLT", "length": 171, "header": "tr|A0A5G2QE96-1|A0A5G2QE96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE96-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96/entry", "sequence": { "sequence": "MPRSRTAGSYGSSIFSFLRNLHTFFHSGCTNLHSHQQCRRVPSSLHLLQHLLFVDLLMMVILTGVRWHLTVVLTCISLTISDVEHFFMCLMTIHMSSFLFRSSAHFSVGFFGFLLLSYMNYLYILAIKPFTTALSFQGFVFVFMVSFAVQKLVSLIGFHLFLFLFLLPSLT", "length": 171, "header": "tr|A0A5G2QE96-1|A0A5G2QE96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QE96-1" }, "locus": { "chromosome": "9", "start_pos": 131063542, "end_pos": 131063030, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083183.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083183.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060365.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060365.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QE96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 171, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QE96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QE96" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEA4-1", "uniprot_ac": "A0A5G2QEA4", "uniprot_id": "A0A5G2QEA4_PIG", "mass": { "chemical_mass": 23019.0, "monoisotopic_mass": 23019.0 }, "refseq": {}, "gene_names": [ { "name": "MED29", "type": "recommended", "evidence": [ { "id": "A0A5G2QEA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QEA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEA4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MED29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QEA4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046487", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046487", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QEA4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKRAAMDPYSALTSVWRSSTHSVTSWSSACAWHMSACHRVATVPSTLRRWCLQPPSPMPCSLTACPTHSTWRSSKPRLPVPRTFTLLSWTAPTRSQARRLRHQQALGAPCELARLGMGQAVGEGDREGMKSGLKAASSLTFLPTEHCGRSQQGAPEASRECAGWGLASALCLFSSLAESRLWIVPGGDLFRVSPSPGLGMEPWFGSTPSVLP", "length": 213, "header": "tr|A0A5G2QEA4-1|A0A5G2QEA4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MED29 PE=4 SV=1 CANONICAL=A0A5G2QEA4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4/entry", "sequence": { "sequence": "MDKRAAMDPYSALTSVWRSSTHSVTSWSSACAWHMSACHRVATVPSTLRRWCLQPPSPMPCSLTACPTHSTWRSSKPRLPVPRTFTLLSWTAPTRSQARRLRHQQALGAPCELARLGMGQAVGEGDREGMKSGLKAASSLTFLPTEHCGRSQQGAPEASRECAGWGLASALCLFSSLAESRLWIVPGGDLFRVSPSPGLGMEPWFGSTPSVLP", "length": 213, "header": "tr|A0A5G2QEA4-1|A0A5G2QEA4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MED29 PE=4 SV=1 CANONICAL=A0A5G2QEA4-1" }, "locus": { "chromosome": "6", "start_pos": 48057001, "end_pos": 48053270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080792.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080792.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061992.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 208, "start_aa": "Thr", "end_pos": 208, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr208", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEA4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEA4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 213, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEA4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEA4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 208 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEH1-1", "uniprot_ac": "A0A5G2QEH1", "uniprot_id": "A0A5G2QEH1_PIG", "mass": { "chemical_mass": 35778.0, "monoisotopic_mass": 35778.0 }, "refseq": {}, "gene_names": [ { "name": "AKR1C2", "type": "recommended", "evidence": [ { "id": "A0A5G2QEH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ] } ], "protein_names": [ { "name": "Putative aldo-keto reductase family 1 member C2", "type": "synonym", "evidence": [ { "id": "A0A5G2QEH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKR1C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1", "locus": { "chromosome": "10", "start_pos": 65643062, "end_pos": 65617571, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058443", "url": "https://www.ensembl.org/id/ENSSSCG00000058443" } ] } } ], "crossref": [ { "id": "A0A5G2QEH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011147", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011147", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19108", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19108", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR018170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11732", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11732", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193368", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193368", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-193775", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-193807", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193807", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2162123", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2162123", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5365859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975634", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975634", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9757110", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9757110", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIU0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGC4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJV2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPKSQCLELNDGHLIPVLGFGTYAPEEVPKSEALEATKYAIEVGFCHIDGAHLYQKEEQVGQTYSTRQRWGCGCLWATFLRPELVQPALEKSLKNLQLDYVDLYIIHFPVALKPGDELLPRDENGKIIMDTVDFCHTWEALEKCKDAGLTKSIGVSNFNHQQLERILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSNDIVLVANAALGSQRLKGWVNLNHPVLLEDPVLHAIAKKHKQTSAVIALRYQLQRGVVVLSLMCFFPSFQVFDFELTTEDMKAIDGLNRNMRYYLAPYQAKYHRGISIACDCGNWT", "length": 315, "header": "tr|A0A5G2QEH1-1|A0A5G2QEH1_PIG Isoform 1 of Putative aldo-keto reductase family 1 member C2 OS=Sus scrofa OX=9823 GN=AKR1C2 PE=3 SV=2 CANONICAL=A0A5G2QEH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1/entry", "sequence": { "sequence": "MDPKSQCLELNDGHLIPVLGFGTYAPEEVPKSEALEATKYAIEVGFCHIDGAHLYQKEEQVGQTYSTRQRWGCGCLWATFLRPELVQPALEKSLKNLQLDYVDLYIIHFPVALKPGDELLPRDENGKIIMDTVDFCHTWEALEKCKDAGLTKSIGVSNFNHQQLERILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSNDIVLVANAALGSQRLKGWVNLNHPVLLEDPVLHAIAKKHKQTSAVIALRYQLQRGVVVLSLMCFFPSFQVFDFELTTEDMKAIDGLNRNMRYYLAPYQAKYHRGISIACDCGNWT", "length": 315, "header": "tr|A0A5G2QEH1-1|A0A5G2QEH1_PIG Isoform 1 of Putative aldo-keto reductase family 1 member C2 OS=Sus scrofa OX=9823 GN=AKR1C2 PE=3 SV=2 CANONICAL=A0A5G2QEH1-1" }, "locus": { "chromosome": "10", "start_pos": 65642760, "end_pos": 65630317, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086818.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086818.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062073.2" } ] } }, { "isoform_ac": "A0A5G2RIU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIU0/entry", "sequence": { "sequence": "MDPKSQCLELNDGHLIPVLGFGTYAPEEVPKSEALEATKYAIEVGFCHIDGAHLYQKEEQVGQREDIFYTSKLWATFLRPELVQPALEKSLKNLQLDYVDLYIIHFPVALKPGDELLPRDENGKIIMDTVDFCHTWEALEKCKDAGLTKSIGVSNFNHQQLERILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSNDIVLVANAALGSQRLKGWVNLNHPVLLEDPVLHAIAKKHKQTSAVIALRYQLQRGVVVLVFDFELTTEDMKAIDGLNRNMRYYLAPYGADHPEYPFTEEF", "length": 297, "header": "tr|A0A5G2RIU0-1|A0A5G2RIU0_PIG Computationally mapped isoform of Putative aldo-keto reductase family 1 member C2 OS=Sus scrofa OX=9823 GN=AKR1C2 PE=3 SV=2 CANONICAL=A0A5G2QEH1-1" }, "locus": { "chromosome": "10", "start_pos": 65642977, "end_pos": 65630317, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074955.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074955.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071578.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071578.2" } ] } }, { "isoform_ac": "A0A8W4FGC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGC4/entry", "sequence": { "sequence": "MDPKSQCLELNDGHLIPVLGFGTYAPEEVPKSEALEATKYAIEVGFCHIDGAHLYQKEEQVGQAIRSKIADGVKREDIFYTSKLWATFLRPELVQPALEKSLKNLQLDYVDLYIIHFPVALKEDLGMTALEDNSQCGDF", "length": 139, "header": "tr|A0A8W4FGC4-1|A0A8W4FGC4_PIG Computationally mapped isoform of Putative aldo-keto reductase family 1 member C2 OS=Sus scrofa OX=9823 GN=AKR1C2 PE=4 SV=1 CANONICAL=A0A5G2QEH1-1" }, "locus": { "chromosome": "10", "start_pos": 65634144, "end_pos": 65630317, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095793.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095793.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078484.1" } ] } }, { "isoform_ac": "A0A8W4FJV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJV2/entry", "sequence": { "sequence": "PSSISHTHDYNFILSLLGSSSKALGTSDVPKSEALEATKYAIEVGFCHIDGAHLYQKEEQVGQREDIFYTSKLWATFLRPELVQPALEKSLKNLQLDYVDLYIIHFPVALKPGDELLPRDENGKIIMDTVDFCHTWEALEKCKDAGLTKSIGVSNFNHQQLERILNKPGLKYKPVCNQVECHPYFNQSKLLDFCKSNDIVLVANAALGSQRLKGWVNLNHPVLLEDPVLHAIAKKHKQTSAVIALRYQLQRGVVVLVFDFELTTEDMKAIDGLNRNMRYYLAP", "length": 283, "header": "tr|A0A8W4FJV2-1|A0A8W4FJV2_PIG Computationally mapped isoform of Putative aldo-keto reductase family 1 member C2 OS=Sus scrofa OX=9823 GN=AKR1C2 PE=3 SV=1 CANONICAL=A0A5G2QEH1-1" }, "locus": { "chromosome": "10", "start_pos": 65642445, "end_pos": 65632065, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096243.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096243.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078585.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078585.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193368", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193368", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol" }, { "id": "R-SSC-193775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 24-hydroxycholesterol" }, { "id": "R-SSC-193807", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193807", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 27-hydroxycholesterol" }, { "id": "R-SSC-2162123", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2162123", "resource": "Reactome", "description": "Synthesis of Prostaglandins (PG) and Thromboxanes (TX)" }, { "id": "R-SSC-5365859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "resource": "Reactome", "description": "RA biosynthesis pathway" }, { "id": "R-SSC-975634", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975634", "resource": "Reactome", "description": "Retinoid metabolism and transport" }, { "id": "R-SSC-9757110", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9757110", "resource": "Reactome", "description": "Prednisone ADME" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "aldose reductase (NADPH) activity", "id": "GO:0004032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004032", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "androsterone dehydrogenase [NAD(P)+] activity", "id": "GO:0047023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047023", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "bile acid binding", "id": "GO:0032052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032052", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "ketosteroid monooxygenase activity", "id": "GO:0047086", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047086", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "prostaglandin metabolic process", "id": "GO:0006693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006693", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "daunorubicin metabolic process", "id": "GO:0044597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044597", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "doxorubicin metabolic process", "id": "GO:0044598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044598", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" }, { "name": "progesterone metabolic process", "id": "GO:0042448", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042448", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEH1" }, { "id": "PF00248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NADP-dependent oxidoreductase", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 287, "start_aa": "Leu", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 313, "end_pos": 315 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEI2-1", "uniprot_ac": "A0A5G2QEI2", "uniprot_id": "A0A5G2QEI2_PIG", "mass": { "chemical_mass": 70059.0, "monoisotopic_mass": 70059.0 }, "refseq": { "ac": "XP_003481731", "name": "WW domain-binding protein 11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481731" }, "gene_names": [ { "name": "WBP11", "type": "recommended", "evidence": [ { "id": "A0A5G2QEI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ] }, { "name": "WBP11", "type": "synonym", "evidence": [ { "id": "XP_003481731", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481731" } ] } ], "protein_names": [ { "name": "Wbp11/ELF5/Saf1 N-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QEI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2/entry#names_and_taxonomy" } ] }, { "name": "WW domain-binding protein 11", "type": "synonym", "evidence": [ { "id": "XP_003481731", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481731" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WBP11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000611", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000611", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739009", "url": "https://www.ncbi.nlm.nih.gov/gene/100739009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739009", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739009", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FGMRMPP", "url": "https://omabrowser.org/oma/group/FGMRMPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QEI2", "url": "https://www.orthodb.org/?gene=A0A5G2QEI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13361", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13361", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13361:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13361:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481731", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481731", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ87", "url": "https://www.uniprot.org/uniprotkb/F1SQ87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ87-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDRSDGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEDSLSDGTSAASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGATATPQRKSEDDSAVPLAKAAPKSGPAVPVSVQTKDDVYEAFMKEMEGLL", "length": 641, "header": "tr|A0A5G2QEI2-1|A0A5G2QEI2_PIG Isoform 1 of Wbp11/ELF5/Saf1 N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=WBP11 PE=1 SV=1 CANONICAL=A0A5G2QEI2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2/entry", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDRSDGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEDSLSDGTSAASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGATATPQRKSEDDSAVPLAKAAPKSGPAVPVSVQTKDDVYEAFMKEMEGLL", "length": 641, "header": "tr|A0A5G2QEI2-1|A0A5G2QEI2_PIG Isoform 1 of Wbp11/ELF5/Saf1 N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=WBP11 PE=1 SV=1 CANONICAL=A0A5G2QEI2-1" }, "locus": { "chromosome": "5", "start_pos": 57766166, "end_pos": 57751916, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077022.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077022.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062088.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062088.1" } ] } }, { "isoform_ac": "F1SQ87-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ87/entry", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDRSDGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEDSLSDGTSAASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGATATPQRKSEDDSAVPLAKAAPKSGPAVPVSVQTKDDVYEAFMKEMEGLL", "length": 600, "header": "tr|F1SQ87-1|F1SQ87_PIG Computationally mapped isoform of Wbp11/ELF5/Saf1 N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=WBP11 PE=1 SV=5 CANONICAL=A0A5G2QEI2-1" }, "locus": { "chromosome": "5", "start_pos": 57766166, "end_pos": 57751916, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000657.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000657.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000642.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000642.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739009", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BNM6-1", "protein_name": "WW domain binding protein 11", "gene_name": "WBP11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPTRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDSDRSDGESEGDEFVHRDDTERENNEEKKSGLSVRFADMPGKSRKKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEEDDEDSDDSEAEKQSQKQHKEESLSDGTSAASQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGAAAAPQRKSEDDSAVPLAKTAPKSGPSVPVSVQTKDDVYEAFMKEMEGLL", "length": 640 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BSG7-1", "protein_name": "WW domain binding protein 11", "gene_name": "WBP11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPVRSISMLPPPGLGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALEMAPRRREEDVSYGSEPGQRGHDDDMSSTSEDEGYPEDMDQDKHDESSDDSDSDRSDADSEGEEFPRRDNDKEREGGEEKKSGHSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEYSEEEEEEEEDSESEDASQQQQQQQQHSEEALAETGSSAAASTQQQQSSQAVASSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGLPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMLRPPLVPPLGPAPPGLYPPAPLPNPGVLSAPPSLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGALAASQRKQDDEPALPLTKAAPKAGSSAPISVQTKDDVYEAFMKEMEGLL", "length": 648 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O76861-1", "protein_name": "Wbp11/ELF5/Saf1 N-terminal domain-containing protein", "gene_name": "EG:100G10.1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGRRSINTTKSGKYMNPTDQARKEARKKELKKNKKQRQMVRAAVLKNKDPSQILEEMEKIDEMEYNVLQPSPLNEKVLRDKRKKLKETFDRVMRLYHNDEPEHWADLKRKEVEYEKKRLKKQQYYESVKHAQSVQIDEIPLPAPVSAVSGGSTETTGGSVVAGFGASVVIRLPPPPMTMALPPYAPGAPPGVSRNSDLASEAQVEKSKENEQKDWLGVPPGPPPDLFAFSELNSDAEGNTDYDGEGEEEEPEPLKKGKDKEKDKNSEATEPNNQNIDDFMKEMEHVHKRKHRKLAAKEDEADKKREEDDGKDIDKIEERTSDSDKRTASSTDDEDDDDQDEDENMPEVPTKPASVKSSTATPAPAPPTAPTLPTIPLPPASSVPAPPQLPHLPPIPNLGPPGIMYRPPPMRPPHPGSGFGIRMPPGPPPGPRAPHGLGPIPRMGIRMPPGPPPGLPPRLAHHNKQGGGAGAPKESAKGVATITAKPQIRNLSADVTRFVPSTLRVKREDQRRTARPRHAANDGHHAHSEAHSKPPTKDDAYLQFMNEMQGLL", "length": 552 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5PQQ2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "Wbp11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTSEDDGYPEDMDQDKHDDSTEDSDTDRSDAESDGDEFGHRDDSERDNTEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEEEDDDDSEDSEAEKPSQKQHKEDSHADGSSAASSQQQAPPQAVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGIRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADDASAATIEKKATATISAKPQITNPKAEVTRFVPTALRVRRENKGATAVPQRRSEEDSAVPVAKAAPRSGPSVPVSVQTKDDVYEAFMKEMEGLL", "length": 641 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q923D5-1", "protein_name": "WW domain-binding protein 11", "gene_name": "Wbp11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPARAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTSEDDGYPEDMDQDKHDDSTEDSDTDRSDAESDGDEFGHREDSERDNTEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEEEDADDSDDSEAEKQSQKQHKDDGHSDSTAAASSQQQAPPQSAPASQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGIRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADDASAATIEKKATATISAKPQITNPKAEVTRFVPTALRVRRENKGATAVPQRRSEDDSAVPVAKAAPRSGPSVAVSVQTKDDVYEAFMKEMEGLL", "length": 641 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LV14-1", "protein_name": "Protein EARLY FLOWERING 5", "gene_name": "ELF5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKTTKGGKVMNPTDAYRKQIRKREIKRNKKERQKVREVGILKKDPEQIKDQIRKLDMSKAEGALDKARKHKKRQLEDTLKMVVKKRKEYDEKKKEQGEATTSVMFSHLPPQRRLTGEEDLKPEDSVYYHPTLNPTGAPPPGKPPMYNSSIGLAISSDGASSSSAALSSITESEDSVLVNPPPLPPLPDGDNALSASLPLPPLPPLPPTTGLTLPHSPFPPPPPGPPPKEQDFVRPPLPPPPQLPQSSQPPPPGLSGSQGDGRFPESSDFTFDNRMNANITSVPLLPPPGIPSNESESRPAESNASSFQNANLSKMVAPPPPAPLHQQHQSTFAGAAASLTNFQPDVHPPPGMLRFPPPPPPLDMHPPHPGMFVGHLIPRPPYGPPPGPPPMMRPPLPPGPPPSSFQDGQAMIRPYVPNKPSFVKSAAPTVVRRPLAQHTPELTSMVPASVRVRRESATVTKPKPKTSIASSLSFTPRAMASAATVKVEPAKTSAASKPQSIDDSYTAFLEDMKALGALDG", "length": 520 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEMEFNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGPPPGPPPPQVVQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDKSDGESDGDEFVHRDNGERDNNEEKKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEDDDEDDSDDSEAEKQSQKQHKEESHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKKATATISAKPQITNPKAEITRFVPTALRVRRENKGATAAPQRKSEDDSAVPLAKAAPKSGPSVPVSVQTKDDVYEAFMKEMEGLL", "length": 641 }, "evidence": [ { "id": "A0A5G2QEI2", "url": "https://omabrowser.org/oma/group/A0A5G2QEI2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "pmid": "" }, { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEI2" }, { "id": "PF09429", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09429" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Wbp11/ELF5/Saf1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 92, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEL1-1", "uniprot_ac": "A0A5G2QEL1", "uniprot_id": "A0A5G2QEL1_PIG", "mass": { "chemical_mass": 291138.0, "monoisotopic_mass": 291138.0 }, "refseq": {}, "gene_names": [ { "name": "UNC79", "type": "recommended", "evidence": [ { "id": "A0A5G2QEL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1" } ] } ], "protein_names": [ { "name": "Unc-79 homolog, NALCN channel complex subunit", "type": "synonym", "evidence": [ { "id": "A0A5G2QEL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UNC79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1", "locus": { "chromosome": "7", "start_pos": 115027711, "end_pos": 114766489, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038851", "url": "https://www.ensembl.org/id/ENSSSCG00000038851" } ] } } ], "crossref": [ { "id": "ENSSSCG00000038851", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038851", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21696:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21696:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QEL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5U5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTKAEQFASKIRYLQEYHNRVLHNIYPVPSGTDIANTLKYFSQTLLSILSRTGKKENQDASNLTVPMTMCLFPVPFPLTPSLRPQVSSINPTVTRSLLYSVLRDAPSERGLQSRDAHLSDYPSLDYQGLYVTLVTLLDLVPLLQHGQHDLGQSIFYTTTCLLPFLNDDILSTLPYTMISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRREGVPAHVNLSASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGAASETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQEQALLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLAARRVSVASDPGRRVQHNMLSPFHSPFQSPFRSPMRSPFRSPFKNFGHQGGRTIDFDCEDDEMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKDEKAIECSLCQSSILCYQLACELLERLAPKEESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPATKHEENPGSCTESMEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYIARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDISKVLLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDSILHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYIMQRQQDHGRSRQNSATRPDNPEIPENPAMEGFQEMRRPVIPEVRLNCMETFEVKVDSPVKPAPKEDLDLIDLSSDSTSGPEKHSMLSTSDSDSLVFEPLPPLRIVESDEEETMDQGNDGATGKNAASSLSIPSHPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNNQSAGDKDSSLIALEDPTDSEELAKSELQEFSCGSPLTLKQKRDLLQKSFALPERSLDDNPEPSTEEEKPSGLMPSLGTKTVLLKVPEDSENPMESEKPNTSAESDTEQNPERKAEEEGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNILDKLGDQKEPDPATKGLSTLEMPRESSSAPTLEAGVPETSSHSSISKQVQPGKRQCNVPTCLNPDLEGQPLRMRGATKSSLLSAPSIVSMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSTIKDGTFLRTLATSLMDFNELSSVAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWTTISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVEVCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECVRQYINEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVIRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNTSSLCLPIPLDAGSHIADHLIVILIGFPEQSKTSVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQSQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNIKHLSAGLQLRLQAIQNNVNHHSLRTLPGSAQSSAGLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2594, "header": "tr|A0A5G2QEL1-1|A0A5G2QEL1_PIG Isoform 1 of Unc-79 homolog, NALCN channel complex subunit OS=Sus scrofa OX=9823 GN=UNC79 PE=4 SV=1 CANONICAL=A0A5G2QEL1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1/entry", "sequence": { "sequence": "MSTKAEQFASKIRYLQEYHNRVLHNIYPVPSGTDIANTLKYFSQTLLSILSRTGKKENQDASNLTVPMTMCLFPVPFPLTPSLRPQVSSINPTVTRSLLYSVLRDAPSERGLQSRDAHLSDYPSLDYQGLYVTLVTLLDLVPLLQHGQHDLGQSIFYTTTCLLPFLNDDILSTLPYTMISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRREGVPAHVNLSASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGAASETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQEQALLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLAARRVSVASDPGRRVQHNMLSPFHSPFQSPFRSPMRSPFRSPFKNFGHQGGRTIDFDCEDDEMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKDEKAIECSLCQSSILCYQLACELLERLAPKEESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPATKHEENPGSCTESMEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYIARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIRQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDISKVLLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDSILHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYIMQRQQDHGRSRQNSATRPDNPEIPENPAMEGFQEMRRPVIPEVRLNCMETFEVKVDSPVKPAPKEDLDLIDLSSDSTSGPEKHSMLSTSDSDSLVFEPLPPLRIVESDEEETMDQGNDGATGKNAASSLSIPSHPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNNQSAGDKDSSLIALEDPTDSEELAKSELQEFSCGSPLTLKQKRDLLQKSFALPERSLDDNPEPSTEEEKPSGLMPSLGTKTVLLKVPEDSENPMESEKPNTSAESDTEQNPERKAEEEGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNILDKLGDQKEPDPATKGLSTLEMPRESSSAPTLEAGVPETSSHSSISKQVQPGKRQCNVPTCLNPDLEGQPLRMRGATKSSLLSAPSIVSMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSTIKDGTFLRTLATSLMDFNELSSVAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWTTISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVEVCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECVRQYINEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVIRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNTSSLCLPIPLDAGSHIADHLIVILIGFPEQSKTSVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQSQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNIKHLSAGLQLRLQAIQNNVNHHSLRTLPGSAQSSAGLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2594, "header": "tr|A0A5G2QEL1-1|A0A5G2QEL1_PIG Isoform 1 of Unc-79 homolog, NALCN channel complex subunit OS=Sus scrofa OX=9823 GN=UNC79 PE=4 SV=1 CANONICAL=A0A5G2QEL1-1" }, "locus": { "chromosome": "7", "start_pos": 115027344, "end_pos": 114766848, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065663.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065663.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062123.1" } ] } }, { "isoform_ac": "A0A5G2R5U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U5/entry", "sequence": { "sequence": "MSTKAEQFASKIRYLQEYHNRVLHNIYPVPSGTDIANTLKYFSQTLLSILSRTGKKENQDASNLTVPMTMCLFPVPFPLTPSLRPQVSSINPTVTRSLLYSVLRDAPSERGLQSRDAHLSDYPSLDYQGLYVTLVTLLDLVPLLQHGQHDLGQSIFYTTTCLLPFLNDDILSTLPYTMISTLATFPPFLHKDIIEYLSTSFLPMAILGSSRREGVPAHVNLSASSMLMIAMQYTSNPVYHCQLLECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFHYWPNLKPPGAISEYRGLQYTAWNPIHCQHIECHNAINKPAVKMCIDPSLSVALGDKPPPLYLCEECSQRIAGDHSEWLIDVLLPQAEISAICQKKNCSSHVRRAVVTCFSAGCCGRHGNRPVRYCKRCHSNHHSNEVGAASETHLYQTSPPPINTRECGAEELVCAVEAVISLLKEAEFHAEQREHELNRRRQLGLSSSHHSLDNADFDNKDDDKHDQRLLSQFGIWFLVSLCTPSENTPTESLARLVAMVFQWFHSTAYMMDDEVGSLVEKLKPQFVTKWLKTVCDVRFDVMVMCLLPKPMEFARVGGYWDKSCSTVTQLKEGLNRILCLIPYNVISQSVWECIMPEWLEAIRTEVPDNQLKEFREVLSKMFDIELCPLPFSMEEMFGFISCRFTGYPSSVQEQALLWLHVLSELDIMVPLQLLISMFSDGVNSVKELANQRKSRVSELAGNLAARRVSVASDPGRRVQHNMLSPFHSPFQSPFRSPMRSPFRSPFKNFGHQGGRTIDFDCEDDEMNLNCFILMFDLLLKQMELQDDGITMGLEHSLSKDIISIINNVFQAPWGGSHTCQKDEKAIECSLCQSSILCYQLACELLERLAPKEESRLVEPTDSLEDSLLSSRPEFIIGPEGEEEENPATKHEENPGSCTESMEHAAIKNDTERKFCYQQLPVTLRLIYTIFQEMAKFEEPDILFNMLNCLKILCLHGECLYIARKDHPQFLAYIQDHMLIASLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDRPTILSKLLLLHFLKQDIPALSWEFFVNRFETLSLEAQLHLDCNKEFPFPTTITAVRTNVANLSDAALWKIKRARFARNRQKSVRSLRDSVKGPAESKRALSLPETLTSKIPMRLTRHEQSAPALGGTPEQTPGQQSPENDNTIKDLLPEDAGIDHQTVHQLITVLMKFMAKDESSAESDISSAKAFNTVKRHLYVLLGYDQQEGCFMIAPQKMRLSTCFNAFIAGIAQVMDYNINLGKHLLPLVVQVLKYCSCPQLRHYFQQPPRCSLWSLKPHIRQMWLKALLVILYKYPYRDCDISKVLLHLIHITVNTLNAQYHSCKPHATAGPLYSDNSNISRYSEKEKGEIELAEYRETGALQDSILHCVREESIQKKKLRSLKQKSLDIGNADSLLFTLDEHRRKSCIDRCDIDKPPAQAAYIMQRQQDHGRSRQNSATRPDNPEIPENPAMEGFQEMRRPVIPEVRLNCMETFEVKVDSPVKPAPKEDLDLIDLSSDSTSGPEKHSMLSTSDSDSLVFEPLPPLRIVESDEEETMDQGNDGATGKNAASSLSIPSHPSVLSLSTTPLVQVSVEDCSKDFSSKDSGNNQSAGDKDSSLIALEDPTDSEELAKSELQEFSCGSPLTLKQKRDLLQKSFALPERSLDDNPEPSTEEEKPSGLMPSLGTKTVLLKVPEDSENPMESEKPNTSAESDTEQNPERKAEEEGAEESEFKIQIVPRQRKQRKIAVSAIQREYLDISFNILDKLGDQKEPDPATKGLSTLEMPRESSSAPTLEAGVPETSSHSSISTQYRQMKRGSLGALTMSQLMKRQLEHQSSAPHNISNWDTEQVQPGKRQCNVPTCLNPDLEGQPLRMRGATKSSLLSAPSIVSMFVPAPEEFTDEQPTVMTDKCHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAESMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSTIKDGTFLRTLATSLMDFNELSSVAALSQLLEGLNNKKNLPAGGAMIRCLENIATFMEALPMDSPSSLWTTISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVEVCGLCYRAFTKERDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECVRQYINEVLDFMADMHTLTKLKSHMKTCSQPLHEDTFGGHLKVGLAQIAAMEISRGNHRDNKAVIRYLPWLYHPPSAMQQGPKEFIECVSHIRLLSWLLLGSLTHNAVCPNTSSLCLPIPLDAGSHIADHLIVILIGFPEQSKTSVLHMCSLFHAFIFAQLWTVYCEQSAVATNVQSQNEFSFTAILTALEFWSRVTPSILQLMAHNKVMVEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNIKHLSAGLQLRLQAIQNNVNHHSLRTLPGSAQSSAGLAALRKWLQCTQFKMAQVEIQSSEAASQFYPL", "length": 2655, "header": "tr|A0A5G2R5U5-1|A0A5G2R5U5_PIG Computationally mapped isoform of Unc-79 homolog, NALCN channel complex subunit OS=Sus scrofa OX=9823 GN=UNC79 PE=4 SV=1 CANONICAL=A0A5G2QEL1-1" }, "locus": { "chromosome": "7", "start_pos": 115027344, "end_pos": 114766848, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082271.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082271.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072611.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072611.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2476, "start_aa": "Thr", "end_pos": 2476, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2476", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1202, "end_pos": 1204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1453, "end_pos": 1455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1703, "end_pos": 1705, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1802, "end_pos": 1804, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2170, "end_pos": 2172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2390, "end_pos": 2392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2508, "end_pos": 2510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 938, "end_pos": 940, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL1" }, { "id": "PF14776", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14776" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein unc-79 homolog N-terminal", "eco_id": "ECO_0000259", "start_pos": 113, "end_pos": 645, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2476 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1202, "end_pos": 1204 }, { "start_pos": 1453, "end_pos": 1455 }, { "start_pos": 1703, "end_pos": 1705 }, { "start_pos": 1802, "end_pos": 1804 }, { "start_pos": 2170, "end_pos": 2172 }, { "start_pos": 220, "end_pos": 222 }, { "start_pos": 2390, "end_pos": 2392 }, { "start_pos": 2508, "end_pos": 2510 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 938, "end_pos": 940 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEL8-1", "uniprot_ac": "A0A5G2QEL8", "uniprot_id": "A0A5G2QEL8_PIG", "mass": { "chemical_mass": 69128.0, "monoisotopic_mass": 69128.0 }, "refseq": { "ac": "XP_005655002", "name": "RUN and FYVE domain-containing protein 1 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655002" }, "gene_names": [ { "name": "RUFY1", "type": "recommended", "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ] }, { "name": "RUFY1", "type": "synonym", "evidence": [ { "id": "XP_005655002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655002" } ] } ], "protein_names": [ { "name": "RUN and FYVE domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8/entry#names_and_taxonomy" } ] }, { "name": "RUN and FYVE domain-containing protein 1 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005655002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655002" } ] }, { "name": "Rab4-interacting protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Activating adapter involved in cargo sorting from early/recycling endosomes. Regulates retrieval of proteins from endosomes to the trans-Golgi network through interaction with the dynein-dynactin complex. Dual effector of RAB4B and RAB14, mediates a cooperative interaction allowing endosomal tethering and fusion. Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in early endosomal trafficking. In oocytes, self-assembles to form a protein matrix which hold together endolysosomes, autophagosomes and proteasomes and generate non-membrane-bound compartments called endo-lysosomal vesicular assemblies (ELVAs). In immature oocytes, ELVAs sequester ubiquitinated protein aggregates and degrade them upon oocyte maturation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEU1#function" }, { "database": "UniProtKB", "id": "ARBA00055960", "url": "https://www.uniprot.org/uniprotkb/ARBA00055960#function" }, { "database": "UniProtKB", "id": "A0A287BJR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR3#function" }, { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RUFY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8", "locus": { "chromosome": "2", "start_pos": 78963989, "end_pos": 79021574, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014023", "url": "https://www.ensembl.org/id/ENSSSCG00000014023" } ] } } ], "crossref": [ { "id": "A0A5G2QEL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014023", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014023", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15758", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15758", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17694", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17694", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519354", "url": "https://www.ncbi.nlm.nih.gov/gene/100519354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519354", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THCKQCK", "url": "https://omabrowser.org/oma/group/THCKQCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QEL8", "url": "https://www.orthodb.org/?gene=A0A5G2QEL8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QEU1", "url": "https://www.orthodb.org/?gene=A0A5G2QEU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45956", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45956", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45956:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45956:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005655002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BJR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALLMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELAAATDRICSLQEEQQQLREQNELIRERSEKRVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKARLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEDVKAINLQMFHKVQNAESSLQQKNEAITSFEEKNNQVMSSMKQMEERLHHAERARQGAEERSQKLQQELGGRTSALQQQLAQLHQQCSSLEKELKSEKEQRQALQRELLHEKDTSSLLQAELQQVEGLKKELRELQDEKAELQKVCDEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSSTGS", "length": 601, "header": "tr|A0A5G2QEL8-1|A0A5G2QEL8_PIG Isoform 1 of RUN and FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RUFY1 PE=1 SV=1 CANONICAL=A0A5G2QEL8-1" }, "isoforms": [ { "isoform_ac": "A0A287BJR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR3/entry", "sequence": { "sequence": "MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALLMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEEAYRPENMAACGERHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELAAATDRICSLQEEQQQLREQNELIRERSEKRVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKARLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEDVKAINLQMFHKVQNAESSLQQKNEAITSFEEKNNQVMSSMKQMEERLHHAERARQGAEERSQKLQQELGGRTSALQQQLAQLHQQCSSLEKELKSEKEQRQALQRELLHEKDTSSLLQAELQQVEGLKKELRELQDEKAELQKVCDEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSSTGS", "length": 615, "header": "tr|A0A287BJR3-1|A0A287BJR3_PIG Computationally mapped isoform of RUN and FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RUFY1 PE=1 SV=2 CANONICAL=A0A5G2QEL8-1" }, "locus": { "chromosome": "2", "start_pos": 79016354, "end_pos": 78974882, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059445.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059445.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056766.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056766.2" } ] } }, { "isoform_ac": "A0A5G2QEL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8/entry", "sequence": { "sequence": "MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALLMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELAAATDRICSLQEEQQQLREQNELIRERSEKRVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKARLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEDVKAINLQMFHKVQNAESSLQQKNEAITSFEEKNNQVMSSMKQMEERLHHAERARQGAEERSQKLQQELGGRTSALQQQLAQLHQQCSSLEKELKSEKEQRQALQRELLHEKDTSSLLQAELQQVEGLKKELRELQDEKAELQKVCDEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSSTGS", "length": 601, "header": "tr|A0A5G2QEL8-1|A0A5G2QEL8_PIG Isoform 1 of RUN and FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RUFY1 PE=1 SV=1 CANONICAL=A0A5G2QEL8-1" }, "locus": { "chromosome": "2", "start_pos": 79016354, "end_pos": 78974882, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090450.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090450.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062128.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062128.1" } ] } }, { "isoform_ac": "A0A5G2QEU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEU1/entry", "sequence": { "sequence": "MTKMADGEDGSRAGQEPGPAPGPEPGEEFEIVDRSQLPGPGEQQSAAKARAAAEGWSAPILTLARKATGNLSASCGSALRAAAGLSGADGGADGAVRAASKSQMMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALLMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELAAATDRICSLQEEQQQLREQNELIRERSEKRVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKARLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEDVKAINLQMFHKVQNAESSLQQKNEAITSFEEKNNQVMSSMKQMEERLHHAERARQGAEERSQKLQQELGGRTSALQQQLAQLHQQCSSLEKELKSEKEQRQALQRELLHEKDTSSLLQAELQQVEGLKKELRELQDEKAELQKVCDEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSSTGS", "length": 704, "header": "tr|A0A5G2QEU1-1|A0A5G2QEU1_PIG Computationally mapped isoform of RUN and FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RUFY1 PE=1 SV=1 CANONICAL=A0A5G2QEL8-1" }, "locus": { "chromosome": "2", "start_pos": 79021572, "end_pos": 78974882, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077613.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077613.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060546.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060546.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519354", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519354", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "resource": "Reactome", "description": "Synthesis of PIPs at the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FE23-1", "protein_name": "RUN and FYVE domain-containing protein 1", "gene_name": "rufy1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADEDPNTKVESGDVPAKEEEPEVTETGQEDVANNTDELQKDRPADSSWSAPILSFARKATETLSSGVNHYSAGLKTPDTTQQHSSDPVKIAAVKDPVVVERSNLLSMMKLSIKVLIQSSLSLGRTLDSEYPPLQQFFVVLEHCLKHGLKVRKSFIGLQNKSIWAPLEMIEKLCPESADIATSVRDMPGIKTGLGRARAWLHLALMQKKIADYMKVLINRRDLLGEFYEPGALVMEEEGAVIVGMLVGLNVIDANLCVKGEDLDSQVCVIDFSMYLKDPQATESKQDDSKMTAILDQKHYIEELNRHLSCTVTDLQAKMDSLEKTNSKLIEELTAATDRINALREEQEQLKQENANILQSSQRKEEVTLQDSQVELETYRQTRQGLDEMYSVVWKQYKEEKRIRQELQKELELQIGLKQEMEVAMKLLEKDTHEKQDTLVALRQQLDQVKNLNLQMFNKAQASDRVAQKKEEDMVHLEKKMIQMEAAMKELEQRLQNSEDVQKNTDEQQNEIRTEMKGKVNALQKRLSDLDTLRAGLETELSAEKEQRQILQKELQREQDNSAELRTQLQQLQGLQTELLDLRQEKQQLQQLCEEQEQALQEMGLHLSQSKLKMEDFKEVNKALKGHAWLKDDEATQCKQCQKEFSISRRKHHCRNCGDIYCGNCSSNELALPSYPKPVRVCDVCHSLLLQRSSTGS", "length": 697 }, "evidence": [ { "id": "A0A5G2QEL8", "url": "https://omabrowser.org/oma/group/A0A5G2QEL8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1LR42-1", "protein_name": "RUN and FYVE domain-containing protein 1", "gene_name": "Rufy1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARGDCRRAGQDSEPEPKPEPESRPEPGLQAGLESGEEFEIVDRSQLPSPGELRSASRTRAAESWSAPILTLARRATGNLSASCGSALRAAAGLGDGGGGGGERAASKGQMMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDSGREHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQLREQNELIRERSEKSVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEEVKAINLQMFHKVQSAESSLQQKDEAIASFEGKTTQVMSSMKQMEERLQQAERARQGAEERSYKLQQELSGRVSALQLQLSQLRDQCSGLEKELKSEKEQRQTLQRELQHEKDTSCLLQTELQQVEGLKKELRELQDEKAELRKVCEEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKDFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS", "length": 711 }, "evidence": [ { "id": "A0A5G2QEL8", "url": "https://omabrowser.org/oma/group/A0A5G2QEL8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BIJ7-1", "protein_name": "RUN and FYVE domain-containing protein 1", "gene_name": "Rufy1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARGECRRAGQDSEPEPEREPESEPGPEPEPQAGLESGEAFEIVDRSQLPSPGELRSASRPRVADSWSAPILTLARRATGNLSASCGSALRAAAGLGDGGGGGERAASKGQMMEERANLMHMMKLSIKVLLQSALSLGRSLDADYAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKQLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLCLKDAQDLDSGREHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQKEQQQLREQNEVIRERSEKSVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEEVKAINLQMFHKVQSAESSLQQKNEAIASFEGKTTQVMSSMKQMEERLQQAERARQAAEERSHKLQQELSGRGSALQLQLSQLRDQCSGLEKELKSEKEQRQALQRELQREKDTSCLLQTELQQVEGLKKELRELQDEKAELRKVCEEQEQALQEMGLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKDFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS", "length": 712 }, "evidence": [ { "id": "A0A5G2QEL8", "url": "https://omabrowser.org/oma/group/A0A5G2QEL8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96T51-1", "protein_name": "RUN and FYVE domain-containing protein 1", "gene_name": "RUFY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADREGGCAAGRGRELEPELEPGPGPGSALEPGEEFEIVDRSQLPGPGDLRSATRPRAAEGWSAPILTLARRATGNLSASCGSALRAAAGLGGGDSGDGTARAASKCQMMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEEGMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHLSCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQLREQNELIRERSEKSVEITKQDTKVELETYKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEEVKAINLQMFHKAQNAESSLQQKNEAITSFEGKTNQVMSSMKQMEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEKEQRQALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS", "length": 708 }, "evidence": [ { "id": "A0A5G2QEL8", "url": "https://omabrowser.org/oma/group/A0A5G2QEL8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "regulation of endocytosis", "id": "GO:0030100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030100", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "endosomal vesicle fusion", "id": "GO:0034058", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034058", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "early endosome to Golgi transport", "id": "GO:0034498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034498", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "SH2 domain binding", "id": "GO:0042169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042169", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEL8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 601, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEL8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEL8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 534, "end_pos": 592, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 540, "end_pos": 588, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QEL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEL8" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 163, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEP6-1", "uniprot_ac": "A0A5G2QEP6", "uniprot_id": "A0A5G2QEP6_PIG", "mass": { "chemical_mass": 88211.0, "monoisotopic_mass": 88211.0 }, "refseq": { "ac": "XP_020952903", "name": "zinc finger protein 665-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952903" }, "gene_names": [ { "name": "LOC100627241", "type": "recommended", "evidence": [ { "id": "A0A5G2QEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ] }, { "name": "LOC100627241", "type": "synonym", "evidence": [ { "id": "XP_020952903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952903" } ] } ], "protein_names": [ { "name": "Zinc finger protein 665-like", "type": "recommended", "evidence": [ { "id": "A0A5G2QEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 665-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020952903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952903" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100627241", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QEP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027741", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027741", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627241", "url": "https://www.ncbi.nlm.nih.gov/gene/100627241", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627241", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627241", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QEP6", "url": "https://www.orthodb.org/?gene=A0A5G2QEP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020952903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPEEEIQKRRERKGKESGMAVSQGPLTLEDVAIKFSPEEWACLDPAQRALYRDVMLETCRNLLSLAVSHMQAIKKLKPKANVDMGEALQTVMLGRHESHEIGDFYFKEIQDPVHIFGCQWRDDERNYKKMPITHSECLTDRRDGPIRRDVGIKPVENRLTLSFRNELRVFKGQEKVGELNQADKTISRSASFSPLQTISPIVHRSISHTHGSDFMHPSVLTQDQKAYKGKPYQCDECGKTFPYSSNLSRHQLIHTGEKPYNCDICGKEFSRNSHLACHRRVHTGEKPYKCNECGKTFNQRSNLTRHQIIHTREKAYECDVCGKVFSRKSVLASHQTAHFGEKSYKCNECGKAFRKRSGLTQHKRIHTGEKPYLCVECGKAFRKHSNLTQHKTIHTGEKPYKCSACGKAFSVHSALRNHQVIHTGERPYKCDICGKVFSRNSILASHQRLHTGEKPYTCNVCGKSFIQRSLLWIHEKVHSGEKPYKCNQCGKAFPVRSILTQHMRIHTGEKPYICIECGKAFTKQSNLSQHKTIHTGEKPYKCEECGKAFTQVSSLSRHQKRHPGKKPQQCSGCVKAFIRHSQLSDDERTHTGEKLHKCDVCCKACSQHPELWGQERSHPGELKCSVCGKAFSQHSSLVAHQRIHTGEKPYKCNKCDKAFSQRSQLWRHERTHLGEKSHQCNECGKAFTDRSHLNRHKIIHTGEKPYKCHVCGRAFTQFANLARHQKIHTEKKHCKLGVPVVALWLTNPTRNHEVAGSIPGLDPWVKDPALP", "length": 772, "header": "tr|A0A5G2QEP6-1|A0A5G2QEP6_PIG Isoform 1 of Zinc finger protein 665-like OS=Sus scrofa OX=9823 GN=LOC100627241 PE=3 SV=2 CANONICAL=A0A5G2QEP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6/entry", "sequence": { "sequence": "MLPEEEIQKRRERKGKESGMAVSQGPLTLEDVAIKFSPEEWACLDPAQRALYRDVMLETCRNLLSLAVSHMQAIKKLKPKANVDMGEALQTVMLGRHESHEIGDFYFKEIQDPVHIFGCQWRDDERNYKKMPITHSECLTDRRDGPIRRDVGIKPVENRLTLSFRNELRVFKGQEKVGELNQADKTISRSASFSPLQTISPIVHRSISHTHGSDFMHPSVLTQDQKAYKGKPYQCDECGKTFPYSSNLSRHQLIHTGEKPYNCDICGKEFSRNSHLACHRRVHTGEKPYKCNECGKTFNQRSNLTRHQIIHTREKAYECDVCGKVFSRKSVLASHQTAHFGEKSYKCNECGKAFRKRSGLTQHKRIHTGEKPYLCVECGKAFRKHSNLTQHKTIHTGEKPYKCSACGKAFSVHSALRNHQVIHTGERPYKCDICGKVFSRNSILASHQRLHTGEKPYTCNVCGKSFIQRSLLWIHEKVHSGEKPYKCNQCGKAFPVRSILTQHMRIHTGEKPYICIECGKAFTKQSNLSQHKTIHTGEKPYKCEECGKAFTQVSSLSRHQKRHPGKKPQQCSGCVKAFIRHSQLSDDERTHTGEKLHKCDVCCKACSQHPELWGQERSHPGELKCSVCGKAFSQHSSLVAHQRIHTGEKPYKCNKCDKAFSQRSQLWRHERTHLGEKSHQCNECGKAFTDRSHLNRHKIIHTGEKPYKCHVCGRAFTQFANLARHQKIHTEKKHCKLGVPVVALWLTNPTRNHEVAGSIPGLDPWVKDPALP", "length": 772, "header": "tr|A0A5G2QEP6-1|A0A5G2QEP6_PIG Isoform 1 of Zinc finger protein 665-like OS=Sus scrofa OX=9823 GN=LOC100627241 PE=3 SV=2 CANONICAL=A0A5G2QEP6-1" }, "locus": { "chromosome": "6", "start_pos": 57051482, "end_pos": 57038063, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072111.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072111.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060501.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060501.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627241", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627241", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 772, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEP6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 233, "end_pos": 260, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QEP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP6" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 104, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 247, "end_pos": 249 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 527, "end_pos": 529 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEP8-1", "uniprot_ac": "A0A5G2QEP8", "uniprot_id": "A0A5G2QEP8_PIG", "mass": { "chemical_mass": 73176.0, "monoisotopic_mass": 73176.0 }, "refseq": {}, "gene_names": [ { "name": "LRRIQ3", "type": "recommended", "evidence": [ { "id": "A0A5G2QEP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and IQ motif containing 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QEP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRIQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8", "locus": { "chromosome": "6", "start_pos": 139151925, "end_pos": 138964509, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003784", "url": "https://www.ensembl.org/id/ENSSSCG00000003784" } ] } } ], "crossref": [ { "id": "A0A5G2QEP8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003784", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003784", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "733655", "url": "https://www.ncbi.nlm.nih.gov/gene/733655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:733655", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733655", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UFX8", "url": "https://www.orthodb.org/?gene=A0A4X1UFX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46723", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46723", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46723:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46723:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1UFX8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UFX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UFX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UH71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UH71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UH71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UH71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFHGTITEELTSHKEWSHYNENIIEDQKDFVLVKFNGLHLKSMEGFQSYISLRVCIFSNNFITDIHPLQSCIKLVKLDLHGNQIKSLPESKFWSGLKNLKLLYLHDNGFAKLRNVCVLSACPSLIALTMFDCPVSLKKGYRHVLVNGIWPLKALDHHVISDEEIIQNWHLPERFKAYNHRLFFNFCPSLKKGSTYEDEIGNIKYITSKINEILSHNSPVLIVQRWIRGFLVRKKMSHLFLHKKHQEKITNKCETKWIYIQKGFEDKLYKDLFLQPGTNKTEKLSHWKYNIHSPFDLKYSSERKKHVSSILYELKTRKPRHLIQKGQKESEDEIEDEELDVSFRISVFKLPIYTSDSLKYTAVLKVKEQDSFPTCAQPFSTTHQKPVIKIKDMLLEKSVRKEFFTTQRTGMKLQTLCDIDKYGSEQKQQESHKNKVTAVRMAQVAQERIRLAIQENLDKKIYATHKLTARDNKTIQNGLQRLWQDRSNYLEKVKEKRALFLEGKNQKTQERLLIQNLNNERTFLIKGMNRIDRLKQKQAALKDKNLFVQQKLIAEKYQRDFLKQMKEIRAQEIYKRHCEEKFVNEMIAFQKACERFQDAQTKAATVKKNLIFKISNRMTK", "length": 619, "header": "tr|A0A5G2QEP8-1|A0A5G2QEP8_PIG Isoform 1 of Leucine rich repeats and IQ motif containing 3 OS=Sus scrofa OX=9823 GN=LRRIQ3 PE=4 SV=1 CANONICAL=A0A5G2QEP8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UFX8/entry", "sequence": { "sequence": "MFHGTITEELTSHKEWSHYNENIIEDQKDFVLVKFNGLHLKSMEGFQSYISLRVCIFSNNFITDIHPLQSCIKLVKLDLHGNQIKSLPESKFWSGLKNLKLLYLHDNGFAKLRNVCVLSACPSLIALTMFDCPVSLKKGYRHVLVNGIWPLKALDHHVISDEEIIQNWHLPERFKAYNHRLFFNFCPSLKKGSTYEDEIGNIKYITSKINEILSHNSPVLIVQRWIRGFLVRKKMRCDWIVRLSWSLVGLTLEKRV", "length": 256, "header": "tr|A0A4X1UFX8-1|A0A4X1UFX8_PIG Computationally mapped isoform of Leucine rich repeats and IQ motif containing 3 OS=Sus scrofa OX=9823 GN=LRRIQ3 PE=4 SV=1 CANONICAL=A0A5G2QEP8-1" }, "locus": { "chromosome": "6", "start_pos": 138993735, "end_pos": 138964559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004187.3", "url": "https://www.ensembl.org/id/ENSSSCT00000004187.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004093.1", "url": "https://www.ensembl.org/id/ENSSSCP00000004093.1" } ] } }, { "isoform_ac": "A0A4X1UH71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UH71/entry", "sequence": { "sequence": "MFHGTITEELTSHKEWSHYNENIIEDQKDFVLVKFNGLHLKSMEGFQSYISLRVCIFSNNFITDIHPLQSCIKLVKLDLHGNQGSTYEDEIGNIKYITSKINEILSHNSPVLIVQRWIRGFLVRKKMSHLFLHKKHQEKITNKCETKWIYIQKGFEDKLYKDLFLQPGTNKTEKLSHWKYGKKKLWVNFH", "length": 190, "header": "tr|A0A4X1UH71-1|A0A4X1UH71_PIG Computationally mapped isoform of Leucine rich repeats and IQ motif containing 3 OS=Sus scrofa OX=9823 GN=LRRIQ3 PE=4 SV=1 CANONICAL=A0A5G2QEP8-1" }, "locus": { "chromosome": "6", "start_pos": 139071357, "end_pos": 138964559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089027.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089027.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071299.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071299.1" } ] } }, { "isoform_ac": "A0A5G2QEP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8/entry", "sequence": { "sequence": "MFHGTITEELTSHKEWSHYNENIIEDQKDFVLVKFNGLHLKSMEGFQSYISLRVCIFSNNFITDIHPLQSCIKLVKLDLHGNQIKSLPESKFWSGLKNLKLLYLHDNGFAKLRNVCVLSACPSLIALTMFDCPVSLKKGYRHVLVNGIWPLKALDHHVISDEEIIQNWHLPERFKAYNHRLFFNFCPSLKKGSTYEDEIGNIKYITSKINEILSHNSPVLIVQRWIRGFLVRKKMSHLFLHKKHQEKITNKCETKWIYIQKGFEDKLYKDLFLQPGTNKTEKLSHWKYNIHSPFDLKYSSERKKHVSSILYELKTRKPRHLIQKGQKESEDEIEDEELDVSFRISVFKLPIYTSDSLKYTAVLKVKEQDSFPTCAQPFSTTHQKPVIKIKDMLLEKSVRKEFFTTQRTGMKLQTLCDIDKYGSEQKQQESHKNKVTAVRMAQVAQERIRLAIQENLDKKIYATHKLTARDNKTIQNGLQRLWQDRSNYLEKVKEKRALFLEGKNQKTQERLLIQNLNNERTFLIKGMNRIDRLKQKQAALKDKNLFVQQKLIAEKYQRDFLKQMKEIRAQEIYKRHCEEKFVNEMIAFQKACERFQDAQTKAATVKKNLIFKISNRMTK", "length": 619, "header": "tr|A0A5G2QEP8-1|A0A5G2QEP8_PIG Isoform 1 of Leucine rich repeats and IQ motif containing 3 OS=Sus scrofa OX=9823 GN=LRRIQ3 PE=4 SV=1 CANONICAL=A0A5G2QEP8-1" }, "locus": { "chromosome": "6", "start_pos": 139151922, "end_pos": 138964559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078055.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078055.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062163.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062163.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:733655", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733655", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEP8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 619, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEP8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEP8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 278, "end_pos": 280 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QES2-1", "uniprot_ac": "A0A5G2QES2", "uniprot_id": "A0A5G2QES2_PIG", "mass": { "chemical_mass": 56062.0, "monoisotopic_mass": 56062.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QES2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QES2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047888", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047888", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23143:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23143:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QES2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QES2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVKKGVPFVFPPWDMREWRGKPHRAARGRDKTRGQSPRGQAWARGRSLLEPGSRGAQTTREKLWMPWNGLIVIGKRMELLGRNTQKPRMWDPKLESEDSRVEDVEKTALRGKSGRSQGARRGHSVASALQASAGLGKERSKKMWGKQEVRHKIEAESENAGTTPGPRKGSGFKERLNFTGGRTSGEDLRSRGNDLGQNEEELRSGGEKLRLSGEKLRLSGEKLRSSGEKLRSSGERLRSSGERLGSSGERLRSSGERLRSSGEKLRSSGERLRSSGERLGSSGERLRSSGERLRSSGERLGSSGERLRSSGERLRSSGERLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLSSSREKLVFRGEKLGTSGEDLRSTGDQRPSSIEKLGSSREKLESSGEKLEGLRTGSIQEEKVENMVEVTDDERLIEIVDAEMEMPFKKVEENDEELEETEEGVEAEEDALEGVNDNTDESVSMEEKENIDEGTSE", "length": 506, "header": "tr|A0A5G2QES2-1|A0A5G2QES2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QES2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QES2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2/entry", "sequence": { "sequence": "MSVKKGVPFVFPPWDMREWRGKPHRAARGRDKTRGQSPRGQAWARGRSLLEPGSRGAQTTREKLWMPWNGLIVIGKRMELLGRNTQKPRMWDPKLESEDSRVEDVEKTALRGKSGRSQGARRGHSVASALQASAGLGKERSKKMWGKQEVRHKIEAESENAGTTPGPRKGSGFKERLNFTGGRTSGEDLRSRGNDLGQNEEELRSGGEKLRLSGEKLRLSGEKLRSSGEKLRSSGERLRSSGERLGSSGERLRSSGERLRSSGEKLRSSGERLRSSGERLGSSGERLRSSGERLRSSGERLGSSGERLRSSGERLRSSGERLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLRSSGEKLSSSREKLVFRGEKLGTSGEDLRSTGDQRPSSIEKLGSSREKLESSGEKLEGLRTGSIQEEKVENMVEVTDDERLIEIVDAEMEMPFKKVEENDEELEETEEGVEAEEDALEGVNDNTDESVSMEEKENIDEGTSE", "length": 506, "header": "tr|A0A5G2QES2-1|A0A5G2QES2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QES2-1" }, "locus": { "chromosome": "2", "start_pos": 6490401, "end_pos": 6488884, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089678.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089678.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062694.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062694.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QES2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 506, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QES2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QES8-1", "uniprot_ac": "A0A5G2QES8", "uniprot_id": "A0A5G2QES8_PIG", "mass": { "chemical_mass": 79551.0, "monoisotopic_mass": 79551.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QES8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QES8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QES8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044083", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044083", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QES8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QES8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIISIDAEKAFDKIQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYKFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCSRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2QES8-1|A0A5G2QES8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QES8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QES8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8/entry", "sequence": { "sequence": "MIISIDAEKAFDKIQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYKFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCSRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2QES8-1|A0A5G2QES8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QES8-1" }, "locus": { "chromosome": "9", "start_pos": 119311814, "end_pos": 119309778, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089397.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089397.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062198.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062198.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QES8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 679, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QES8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QES8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES8" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 179, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 529, "end_pos": 531 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QET8-1", "uniprot_ac": "A0A5G2QET8", "uniprot_id": "A0A5G2QET8_PIG", "mass": { "chemical_mass": 51674.0, "monoisotopic_mass": 51674.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "GRIP domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QET8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QET8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QET8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041126", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041126", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QET8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRTLQEDKVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTILTQRERDEATLLLKRKQIENSALQSQVQHFHEKELSFKKDLERLHHQAAHSEESYKLQTLMAEERAAQLGMRVSTLEEKLLLSSRALEEASQQLSLSQQQEKQAVQALANMKTVLAEWMAKADHLEGQLLSAHKLQEKAQAALHGKEDQIKDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKPQRPEVFQIIGSTLGIEREAMQVLLNEEQVSGPRWMTRWLGSKSSPGTPLEPNQQSAMPKMSFSELFVKYLDTESHHTLPLLKPSASGVKPSNAAGRKQTAQNIQLHLQTTFGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 461, "header": "tr|A0A5G2QET8-1|A0A5G2QET8_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QET8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QET8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8/entry", "sequence": { "sequence": "MIRTLQEDKVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTILTQRERDEATLLLKRKQIENSALQSQVQHFHEKELSFKKDLERLHHQAAHSEESYKLQTLMAEERAAQLGMRVSTLEEKLLLSSRALEEASQQLSLSQQQEKQAVQALANMKTVLAEWMAKADHLEGQLLSAHKLQEKAQAALHGKEDQIKDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKPQRPEVFQIIGSTLGIEREAMQVLLNEEQVSGPRWMTRWLGSKSSPGTPLEPNQQSAMPKMSFSELFVKYLDTESHHTLPLLKPSASGVKPSNAAGRKQTAQNIQLHLQTTFGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 461, "header": "tr|A0A5G2QET8-1|A0A5G2QET8_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QET8-1" }, "locus": { "chromosome": "AEMK02000390.1", "start_pos": 24856, "end_pos": 23105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089049.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089049.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062709.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QET8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QET8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 461, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QET8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QET8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QET8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QET8" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 258, "end_pos": 307, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEV3-1", "uniprot_ac": "A0A5G2QEV3", "uniprot_id": "A0A5G2QEV3_PIG", "mass": { "chemical_mass": 51249.0, "monoisotopic_mass": 51249.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC78", "type": "recommended", "evidence": [ { "id": "A0A5G2QEV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 78", "type": "synonym", "evidence": [ { "id": "A0A5G2QEV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3", "locus": { "chromosome": "3", "start_pos": 41057734, "end_pos": 41053936, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000050615", "url": "https://www.ensembl.org/id/ENSSSCG00000050615" } ] } } ], "crossref": [ { "id": "A0A5G2QEV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050615", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050615", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22106:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22106:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14739", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14739", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1SU53", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SU53-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHLAAPGSRPEAPPQAIKNVLPRAEEWLPGVPGGTPTWATNLETGLPSDPELSEEQRLQVCKELVNLQIRTHHLQEQHEAEIFELRSEVLRLESRVLELELHGEQAAPVKADLGHHQALGQELGHKTWGQGHSDQCRLQAQPKDFLTPENEQQKLGDSLQGAERVLEQHRARQQALETRVAALGRQLQGAREEARTAGQQLAACAVVLSACQGQLHQAEAENAQLQLQLKKLNEEYAIRLQHLARAAVECADGAGPTPAVTALRTFLETTLEDIRVAHHSREQQLARAARTYRKRLADLSQRHEELLAAHRASGTPKAASSSLEPLPLHTVSNSSRSEKVEPSRLATLLSFPQKGPREATQGGRLEPRGLETASWAQIHQKLQDFFHSTQAELERERAQLLVRATMAEEQLSDLQEYVDQHLGRYTQEILRLRKLVGPGDPGKEGATPPAKPQRPRTHSR", "length": 461, "header": "tr|A0A5G2QEV3-1|A0A5G2QEV3_PIG Isoform 1 of Coiled-coil domain containing 78 OS=Sus scrofa OX=9823 GN=CCDC78 PE=4 SV=1 CANONICAL=A0A5G2QEV3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SU53-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU53/entry", "sequence": { "sequence": "MEHLAAPGSRPEAPPQAIKNVLPRAEEWLPGVPGGTPTWATNLETGLPSDPELSEEQRLQVCKELVNLQIRTHHLQEQHEAEIFELRSEVLRLESRVLELELHGEQAAPVKADLGHHQALGQELGHKTWGQGHSDQCRLQAQPKDFLTPENEQQKLGDSLQGAERVLEQHRARQQALETRVAALGRQLQGAREEARTAGQQLAACAVVLSACQGQLHQAEAENAQLQLQLKKLNEEYAIRLQHLARAAVECADGAGPTPAVTALRTFLETTLEDIRVAHHSREQQLARAARTYRKRLADLSQRHEELLAAHRASGTPKAASSSLEPLPLHTVSNSSRSEKVEPSRLATLLSFPQKGPREATQGGRLEPRGLETASWAQIHQKLQDFFHSTQSWSGSGHSCSGPRWLRSNFLTYRSMWTSTWAGTHRRS", "length": 428, "header": "tr|A0A4X1SU53-1|A0A4X1SU53_PIG Computationally mapped isoform of Coiled-coil domain containing 78 OS=Sus scrofa OX=9823 GN=CCDC78 PE=4 SV=1 CANONICAL=A0A5G2QEV3-1" }, "locus": { "chromosome": "3", "start_pos": 41057521, "end_pos": 41053984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084531.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084531.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072462.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072462.1" } ] } }, { "isoform_ac": "A0A5G2QEV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3/entry", "sequence": { "sequence": "MEHLAAPGSRPEAPPQAIKNVLPRAEEWLPGVPGGTPTWATNLETGLPSDPELSEEQRLQVCKELVNLQIRTHHLQEQHEAEIFELRSEVLRLESRVLELELHGEQAAPVKADLGHHQALGQELGHKTWGQGHSDQCRLQAQPKDFLTPENEQQKLGDSLQGAERVLEQHRARQQALETRVAALGRQLQGAREEARTAGQQLAACAVVLSACQGQLHQAEAENAQLQLQLKKLNEEYAIRLQHLARAAVECADGAGPTPAVTALRTFLETTLEDIRVAHHSREQQLARAARTYRKRLADLSQRHEELLAAHRASGTPKAASSSLEPLPLHTVSNSSRSEKVEPSRLATLLSFPQKGPREATQGGRLEPRGLETASWAQIHQKLQDFFHSTQAELERERAQLLVRATMAEEQLSDLQEYVDQHLGRYTQEILRLRKLVGPGDPGKEGATPPAKPQRPRTHSR", "length": 461, "header": "tr|A0A5G2QEV3-1|A0A5G2QEV3_PIG Isoform 1 of Coiled-coil domain containing 78 OS=Sus scrofa OX=9823 GN=CCDC78 PE=4 SV=1 CANONICAL=A0A5G2QEV3-1" }, "locus": { "chromosome": "3", "start_pos": 41057613, "end_pos": 41053984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082926.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082926.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062230.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 258, "start_aa": "Thr", "end_pos": 258, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr258", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 448, "start_aa": "Thr", "end_pos": 448, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr448", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEV3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 461, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEV3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEV3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV3" }, { "id": "PF14739", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14739" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4472", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 159, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 258, 448 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 334, "end_pos": 336 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEV8-1", "uniprot_ac": "A0A5G2QEV8", "uniprot_id": "A0A5G2QEV8_PIG", "mass": { "chemical_mass": 70581.0, "monoisotopic_mass": 70581.0 }, "refseq": {}, "gene_names": [ { "name": "GET4", "type": "recommended", "evidence": [ { "id": "A0A5G2QEV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ] } ], "protein_names": [ { "name": "Guided entry of tail-anchored proteins factor 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QEV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GET4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QEV8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040103", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040103", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12875", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12875", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12875:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12875:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AWN6", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F815", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F815", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F815-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F815-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFQMSHNQCISFLTSYVSAPGGGRNTQGFGPRSGPLRAGAWVTPQTLELQAREHPLTPSPCLAGGSLGGVSPRFPIAPRRDGGVFGCPPLGRGLIAGPEHPANPLRAEARFLLESVNSSSTAKNGPRCSRDTLPRTGGDRGRAPGAPAAAPAIVAPAPPGSATWPRSAPPRSHVAVGAPPPASPGSSPATVERLGRPPGRKPRGAADRACDSVSPARSAGAMAAAAAAAMAEQESARNGARNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMCSGALLFFSHGQQNSAADLSMLVLESLEKAEVEVADELLESLAKLFSLMDPNSPERVAFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYCESRYHFLHSSDGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKSSASVVFTTYTQKHPSIENGPPFVQPLLNFIWFLLLALDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTASYGGLLGKEARGCAGPGGSLSAGAVGEGPHGAGARPGQVWGRDGLGSCAHGVGLVPPARPEPRPCRHCHPAPLANLLPPGVRSPRPVLLCASSSLGVAAAPGRCEGVGSPPLPPALPPGPDRGRRVPGPRFAYLCVRPGPRVAPQLLRGLLR", "length": 668, "header": "tr|A0A5G2QEV8-1|A0A5G2QEV8_PIG Isoform 1 of Guided entry of tail-anchored proteins factor 4 OS=Sus scrofa OX=9823 GN=GET4 PE=1 SV=1 CANONICAL=A0A5G2QEV8-1" }, "isoforms": [ { "isoform_ac": "A0A287AWN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN6/entry", "sequence": { "sequence": "MTFQMSHNQCISFLTSYVSAPGGGRNTQGFGPRSGPLRAGAWVTPQTLELQAREHPLTPSPCLAGGSLGGVSPRFPIAPRRDGGVFGCPPLGRGLIAGPEHPANPLRAEARFLLESVNSSSTAKNGPRCSRDTLPRTGGDRGRAPGAPAAAPAIVAPAPPGSATWPRSAPPRSHVAVGAPPPASPGSSPATVERLGRPPGRKPRGAADRACDSVSPARSAGAMAAAAAAAMAEQESARNGARNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMCSGALLFFSHGQQNSAADLSMLVLESLEKAEVEVADELLESLAKLFSLMDPNSPERVAFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYCESRYHFLHSSDGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKSSASVVFTTYTQKHPSIENGPPFVQPLLNFIWFLLLALDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTASYGGLLGNLLSSLMGSSEQEGEDSQDDSSPIELD", "length": 550, "header": "tr|A0A287AWN6-1|A0A287AWN6_PIG Computationally mapped isoform of Guided entry of tail-anchored proteins factor 4 OS=Sus scrofa OX=9823 GN=GET4 PE=1 SV=2 CANONICAL=A0A5G2QEV8-1" }, "locus": { "chromosome": "3", "start_pos": 546902, "end_pos": 532966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048350.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048350.2" } ] } }, { "isoform_ac": "A0A5G2QEV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8/entry", "sequence": { "sequence": "MTFQMSHNQCISFLTSYVSAPGGGRNTQGFGPRSGPLRAGAWVTPQTLELQAREHPLTPSPCLAGGSLGGVSPRFPIAPRRDGGVFGCPPLGRGLIAGPEHPANPLRAEARFLLESVNSSSTAKNGPRCSRDTLPRTGGDRGRAPGAPAAAPAIVAPAPPGSATWPRSAPPRSHVAVGAPPPASPGSSPATVERLGRPPGRKPRGAADRACDSVSPARSAGAMAAAAAAAMAEQESARNGARNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMCSGALLFFSHGQQNSAADLSMLVLESLEKAEVEVADELLESLAKLFSLMDPNSPERVAFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYCESRYHFLHSSDGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKSSASVVFTTYTQKHPSIENGPPFVQPLLNFIWFLLLALDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTASYGGLLGKEARGCAGPGGSLSAGAVGEGPHGAGARPGQVWGRDGLGSCAHGVGLVPPARPEPRPCRHCHPAPLANLLPPGVRSPRPVLLCASSSLGVAAAPGRCEGVGSPPLPPALPPGPDRGRRVPGPRFAYLCVRPGPRVAPQLLRGLLR", "length": 668, "header": "tr|A0A5G2QEV8-1|A0A5G2QEV8_PIG Isoform 1 of Guided entry of tail-anchored proteins factor 4 OS=Sus scrofa OX=9823 GN=GET4 PE=1 SV=1 CANONICAL=A0A5G2QEV8-1" }, "locus": { "chromosome": "3", "start_pos": 543334, "end_pos": 532966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079580.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079580.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060561.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060561.1" } ] } }, { "isoform_ac": "A0A8W4F815-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F815/entry", "sequence": { "sequence": "MTFQMSHNQCISFLTSYVSAPGGGRNTQGFGPRSGPLRAGAWVTPQTLELQAREHPLTPSPCLAGGSLGGVSPRFPIAPRRDGGVFGCPPLGRGLIAGPEHPANPLRAEARFLLESVNSSSTAKNGPRCSRDTLPRTGGDRGRAPGAPAAAPAIVAPAPPGSATWPRSAPPRSHVAVGAPPPASPGSSPATVERLGRPPGRKPRGAADRACDSVSPARSAGAMAAAAAAAMAEQESARNGARNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMCSGALLFFSHGQVISLRRETVGKPVAPRVCLSVLFAESLAKLFSLMDPNSPERVAFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYCESRYHFLHSSDGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKSSASVVFTTYTQKHPSIENGPPFVQPLLNFIWFLLLALDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTASYGGLLGKEARGCAGPGGSLSAGAVGEGPHGAGARPGQVWGRDGLGSCAHGVGLVPPARPEPRPCRHCHPAPLANLLPPGVRSPRPVLLCASSSLGVAAAPGRCEGVGSPPLPPALPPGPDRGRRVPGPRFAYLCVRPGPRVAPQLLRGLLR", "length": 665, "header": "tr|A0A8W4F815-1|A0A8W4F815_PIG Computationally mapped isoform of Guided entry of tail-anchored proteins factor 4 OS=Sus scrofa OX=9823 GN=GET4 PE=3 SV=1 CANONICAL=A0A5G2QEV8-1" }, "locus": { "chromosome": "3", "start_pos": 543334, "end_pos": 532966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093239.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093239.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074934.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074934.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein insertion into ER membrane", "id": "GO:0045048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045048", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "pmid": "" }, { "name": "BAT3 complex", "id": "GO:0071818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071818", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein carrier chaperone", "id": "GO:0140597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140597", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 668, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEV8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 118, "end_pos": 120 }, { "start_pos": 432, "end_pos": 434 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEW5-1", "uniprot_ac": "A0A5G2QEW5", "uniprot_id": "A0A5G2QEW5_PIG", "mass": { "chemical_mass": 25630.0, "monoisotopic_mass": 25630.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QEW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QEW5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046774", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046774", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWNRKEKRLKRNEESLRELWDNVKCTNIHIIGVPEGEEREKETEKKLQEIIAKNFPNVGKEPLTQIQEAQQVPYKTNPRRNTPRHILIKLTKIKDKEKILKAAREKNKVTYKGTLIRLSADFSAETLQARREWHDILNMKGKNLQPRLLYPARLSFRFEGEIRTFTDKQKLREFSNTKPTLQQILKELLQAEKSKRRRNAKRAVKANPKQLIKWQ", "length": 215, "header": "tr|A0A5G2QEW5-1|A0A5G2QEW5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QEW5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5/entry", "sequence": { "sequence": "MWNRKEKRLKRNEESLRELWDNVKCTNIHIIGVPEGEEREKETEKKLQEIIAKNFPNVGKEPLTQIQEAQQVPYKTNPRRNTPRHILIKLTKIKDKEKILKAAREKNKVTYKGTLIRLSADFSAETLQARREWHDILNMKGKNLQPRLLYPARLSFRFEGEIRTFTDKQKLREFSNTKPTLQQILKELLQAEKSKRRRNAKRAVKANPKQLIKWQ", "length": 215, "header": "tr|A0A5G2QEW5-1|A0A5G2QEW5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QEW5-1" }, "locus": { "chromosome": "1", "start_pos": 113869279, "end_pos": 113868635, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069585.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069585.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063246.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063246.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEW5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEW5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 215, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEW5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEW5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 121, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QEW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEW5" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 187, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEX4-1", "uniprot_ac": "A0A5G2QEX4", "uniprot_id": "A0A5G2QEX4_PIG", "mass": { "chemical_mass": 227007.0, "monoisotopic_mass": 227007.0 }, "refseq": {}, "gene_names": [ { "name": "KIAA1549L", "type": "recommended", "evidence": [ { "id": "A0A5G2QEX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4" } ] } ], "protein_names": [ { "name": "KIAA1549 like", "type": "synonym", "evidence": [ { "id": "A0A5G2QEX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIAA1549L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4", "locus": { "chromosome": "2", "start_pos": 27238425, "end_pos": 27559432, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013311", "url": "https://www.ensembl.org/id/ENSSSCG00000013311" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013311", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013311", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21590", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21590", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21590:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21590:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QEX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALQEAKPQGPREAGPAARGRRGPLRAGGLRRAGWGAARCPGVRCPPAAASQDAPPLPPLPPLLLGLLLLAALPKHCLADPGTDSLPIPVTPTPESFPRGKLSPMSPTWPFSEVQSSSAADRTKAVLGPSPDNTSWPQSARTPLLKTHRRARAHGAFPSSPYQGGGRSASLEPSEDSAEPLVHPRPQGGREAAALSGLPHTSMLPPLSTVPPGMSLGAVLPSRPPRVGTPSIPKQPSPKADASPSSSSSLAPSSPHSILFPKPAQPPTEVPVFRQPAPTDPSSSRSIANPRHPLAEEMNGSSPNAQDLVSIPRLGLSGSSAPAEGPHAAGSPMPEFLSSVADLTPLSPPPLAPGSLLLLPGGTPSSSISEVAPSPASTQLSEAEVPARAHKAASLRAFRSTATRRAASSPVQTAASVVVEVTGRTSVPVTAHDSFHSLHLSAAPENSGGPSLSAEHTSPPLVPSPLPRATARPGQESLSGAVLASPSAGADFPSTPALLQPAHSQASPSALTPMPAPQEAGQDASPPAAATDFLLSSPVPTLPSTTGTFSPQEEDSMTAILKISKKAALTVALQTLPSQEGPSLRSESRFASDLSTDHVSRDITPPRRNLLPSAVHPSSLPLAQAPQTVSASLSFSSPKPETHTAAMDRSQWPVSASKQGTAFPSSSEVSDFSTMGDTKKPAITDVSWSSLSTQAGSLPAELTMSDVLQQTNYDVRGHTINSTSWGTHSASVTPPSGLNSSVNTIKFQDFKDNVGHSVTAGGSRFQDPDSGTGTSQAVQQSDASTVGNRTDFLSVSTDSHSRDFQTAGVEESESHPHLQLPAHPAHPLSLTSPSLTSAASWREMFSDGMDPSFQIAGDISPSLEINASTPFQNIPRDHSAAESPPLSSSALFRTPSKALLASQRPEKWTVDASVSPRAEPTTAAATTLFLRKSSPPVLSAALVAKGPGSSPSAVASALVKSSWTTTLARNVTNNAAPGPKATPGAAHPAFSFTPTYMYARTAHAVSTHTAMQADMGAASGLLSTTHLPRKPQAMHTGFPNPTNPDMPRTSTARPLTITAALTSITAPVRATRMPPSSAENTDAALQAASTAMATTGKVASNLECQMSSKLLVKTVLFLTQRRVQVGETLKLSVAKGLTQALRKAFHQNDILAHVDILEHSHNVTVGYYATKGRLVYLPTVVIETLGVYGVSNVTADLKQHTPSLQSVALLAAPWNPQPAGYFQLKTVLQFVSQSDNIQSCKFAQTMEQRLQRAFQDAERKVLNTKSNLTIQMVSTSNASQTVTLVYVVGNRSSFLNGTVASSLLRQLSAELVGFYLTYPPLTIAEPLEYPNLDISETTRDYWVITVLQGVDNSLMGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTVIIIIITAVLCRKNKNDFKPDTMMNLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPLPVRDAPASQERDAPPDGSTIKTARSIETRKSRSPSENGSVISNESGKPSSGRRSPQNVMAQQKVTKEEARKRNVPASDEEEGAVLFDNSGKAAADPFDTSSGSVQLIGIKPTALPVVHPTSDRSQEPAALNGEVNKALKQKSDIEHYRNKLRLKAKRKGYYDFPAGEANKAQTERKKMYEKAPKEIEHVLDPDPELCAPFAEAKTRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNIDRVNEPRGYARPRQVKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSAQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDVGSKTRMAESAGPEPAQLHDSASFAQVSRGPVSVAQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPSSYRNQAWMSYAGENELPSQWADSVPLPGYIEAYPRSRYQQNSPSRLPRQYSQPAGLHPSLEQAPVPSTAASQQSLAENDPSDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV", "length": 2133, "header": "tr|A0A5G2QEX4-1|A0A5G2QEX4_PIG Isoform 1 of KIAA1549 like OS=Sus scrofa OX=9823 GN=KIAA1549L PE=4 SV=2 CANONICAL=A0A5G2QEX4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4/entry", "sequence": { "sequence": "MALQEAKPQGPREAGPAARGRRGPLRAGGLRRAGWGAARCPGVRCPPAAASQDAPPLPPLPPLLLGLLLLAALPKHCLADPGTDSLPIPVTPTPESFPRGKLSPMSPTWPFSEVQSSSAADRTKAVLGPSPDNTSWPQSARTPLLKTHRRARAHGAFPSSPYQGGGRSASLEPSEDSAEPLVHPRPQGGREAAALSGLPHTSMLPPLSTVPPGMSLGAVLPSRPPRVGTPSIPKQPSPKADASPSSSSSLAPSSPHSILFPKPAQPPTEVPVFRQPAPTDPSSSRSIANPRHPLAEEMNGSSPNAQDLVSIPRLGLSGSSAPAEGPHAAGSPMPEFLSSVADLTPLSPPPLAPGSLLLLPGGTPSSSISEVAPSPASTQLSEAEVPARAHKAASLRAFRSTATRRAASSPVQTAASVVVEVTGRTSVPVTAHDSFHSLHLSAAPENSGGPSLSAEHTSPPLVPSPLPRATARPGQESLSGAVLASPSAGADFPSTPALLQPAHSQASPSALTPMPAPQEAGQDASPPAAATDFLLSSPVPTLPSTTGTFSPQEEDSMTAILKISKKAALTVALQTLPSQEGPSLRSESRFASDLSTDHVSRDITPPRRNLLPSAVHPSSLPLAQAPQTVSASLSFSSPKPETHTAAMDRSQWPVSASKQGTAFPSSSEVSDFSTMGDTKKPAITDVSWSSLSTQAGSLPAELTMSDVLQQTNYDVRGHTINSTSWGTHSASVTPPSGLNSSVNTIKFQDFKDNVGHSVTAGGSRFQDPDSGTGTSQAVQQSDASTVGNRTDFLSVSTDSHSRDFQTAGVEESESHPHLQLPAHPAHPLSLTSPSLTSAASWREMFSDGMDPSFQIAGDISPSLEINASTPFQNIPRDHSAAESPPLSSSALFRTPSKALLASQRPEKWTVDASVSPRAEPTTAAATTLFLRKSSPPVLSAALVAKGPGSSPSAVASALVKSSWTTTLARNVTNNAAPGPKATPGAAHPAFSFTPTYMYARTAHAVSTHTAMQADMGAASGLLSTTHLPRKPQAMHTGFPNPTNPDMPRTSTARPLTITAALTSITAPVRATRMPPSSAENTDAALQAASTAMATTGKVASNLECQMSSKLLVKTVLFLTQRRVQVGETLKLSVAKGLTQALRKAFHQNDILAHVDILEHSHNVTVGYYATKGRLVYLPTVVIETLGVYGVSNVTADLKQHTPSLQSVALLAAPWNPQPAGYFQLKTVLQFVSQSDNIQSCKFAQTMEQRLQRAFQDAERKVLNTKSNLTIQMVSTSNASQTVTLVYVVGNRSSFLNGTVASSLLRQLSAELVGFYLTYPPLTIAEPLEYPNLDISETTRDYWVITVLQGVDNSLMGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTVIIIIITAVLCRKNKNDFKPDTMMNLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPLPVRDAPASQERDAPPDGSTIKTARSIETRKSRSPSENGSVISNESGKPSSGRRSPQNVMAQQKVTKEEARKRNVPASDEEEGAVLFDNSGKAAADPFDTSSGSVQLIGIKPTALPVVHPTSDRSQEPAALNGEVNKALKQKSDIEHYRNKLRLKAKRKGYYDFPAGEANKAQTERKKMYEKAPKEIEHVLDPDPELCAPFAEAKTRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNIDRVNEPRGYARPRQVKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSAQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDVGSKTRMAESAGPEPAQLHDSASFAQVSRGPVSVAQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPSSYRNQAWMSYAGENELPSQWADSVPLPGYIEAYPRSRYQQNSPSRLPRQYSQPAGLHPSLEQAPVPSTAASQQSLAENDPSDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV", "length": 2133, "header": "tr|A0A5G2QEX4-1|A0A5G2QEX4_PIG Isoform 1 of KIAA1549 like OS=Sus scrofa OX=9823 GN=KIAA1549L PE=4 SV=2 CANONICAL=A0A5G2QEX4-1" }, "locus": { "chromosome": "2", "start_pos": 27559422, "end_pos": 27240542, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076255.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076255.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063256.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063256.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1164, "start_aa": "Thr", "end_pos": 1164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1164", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 363, "start_aa": "Thr", "end_pos": 363, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr363", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 91, "start_aa": "Thr", "end_pos": 91, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr91", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 982, "start_aa": "Thr", "end_pos": 982, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr982", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1162, "end_pos": 1164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1192, "end_pos": 1194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1267, "end_pos": 1269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1277, "end_pos": 1279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1290, "end_pos": 1292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1296, "end_pos": 1298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1359, "end_pos": 1361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1578, "end_pos": 1580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1584, "end_pos": 1586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1987, "end_pos": 1989, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2104, "end_pos": 2106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" }, { "start_pos": 788, "end_pos": 790, "annotation": "n_glycosylation_sequon" }, { "start_pos": 866, "end_pos": 868, "annotation": "n_glycosylation_sequon" }, { "start_pos": 970, "end_pos": 972, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 91, 93, 279, 363, 982, 1164 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1162, "end_pos": 1164 }, { "start_pos": 1192, "end_pos": 1194 }, { "start_pos": 1267, "end_pos": 1269 }, { "start_pos": 1277, "end_pos": 1279 }, { "start_pos": 1290, "end_pos": 1292 }, { "start_pos": 1296, "end_pos": 1298 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 1359, "end_pos": 1361 }, { "start_pos": 1578, "end_pos": 1580 }, { "start_pos": 1584, "end_pos": 1586 }, { "start_pos": 1987, "end_pos": 1989 }, { "start_pos": 2104, "end_pos": 2106 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 739, "end_pos": 741 }, { "start_pos": 788, "end_pos": 790 }, { "start_pos": 866, "end_pos": 868 }, { "start_pos": 970, "end_pos": 972 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEX8-1", "uniprot_ac": "A0A5G2QEX8", "uniprot_id": "A0A5G2QEX8_PIG", "mass": { "chemical_mass": 12687.0, "monoisotopic_mass": 12687.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QEX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QEX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045237", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045237", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QEX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGTAGSYGSSMDRCLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLVMAILTGVRWYLMVALFCISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QEX8-1|A0A5G2QEX8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QEX8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8/entry", "sequence": { "sequence": "MPKSGTAGSYGSSMDRCLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLVMAILTGVRWYLMVALFCISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QEX8-1|A0A5G2QEX8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QEX8-1" }, "locus": { "chromosome": "X", "start_pos": 63345712, "end_pos": 63345377, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074224.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074224.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060581.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060581.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEX8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEX8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEX8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QEZ1-1", "uniprot_ac": "A0A5G2QEZ1", "uniprot_id": "A0A5G2QEZ1_PIG", "mass": { "chemical_mass": 60051.0, "monoisotopic_mass": 60051.0 }, "refseq": { "ac": "XP_003127742", "name": "putative beta-lactamase-like 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127742" }, "gene_names": [ { "name": "LACTBL1", "type": "recommended", "evidence": [ { "id": "A0A5G2QEZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1" } ] }, { "name": "LACTBL1", "type": "synonym", "evidence": [ { "id": "XP_003127742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127742" } ] } ], "protein_names": [ { "name": "Lactamase beta like 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QEZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1/entry#names_and_taxonomy" } ] }, { "name": "putative beta-lactamase-like 1", "type": "synonym", "evidence": [ { "id": "XP_003127742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127742" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LACTBL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1", "locus": { "chromosome": "6", "start_pos": 80870866, "end_pos": 80885015, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003529", "url": "https://www.ensembl.org/id/ENSSSCG00000003529" } ] } } ], "crossref": [ { "id": "A0A5G2QEZ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEZ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100519718", "url": "https://www.ncbi.nlm.nih.gov/gene/100519718", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519718", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519718", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NDTILWT", "url": "https://omabrowser.org/oma/group/NDTILWT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QEZ1", "url": "https://www.orthodb.org/?gene=A0A5G2QEZ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22935", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22935", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22935:SF95", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22935:SF95", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127742", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127742", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QEZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STY0", "url": "https://www.uniprot.org/uniprotkb/F1STY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STY0-1", "url": "https://www.uniprot.org/uniprotkb/F1STY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGCFLWQYHLPKLKTGSLGPEVTSVPVRMCPQHPEPVPLAHPLPVLKEALEKVDRLLRHALSAPGLAAMSAVVIHNDTVLWTGNFGRKNGSDPASGPPNEYTMYRISSLSKIFPVLMLYRLWEEGIVASLDDPLERYASTFTINNPLGMVSAPGQQSLMDGLEEVGPAPRPSPVTLRRMASQLSGLPRRLRSTSLLWKGSTQEALSLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHTAQGDYQRWILENVLEPLGMVDTGFDLTPLVRARLAAGFYGSGRPAPLYDLGWYRPSGQMYSTTADLAKLAVALLGNGPQRLLRPDAAKTLLAPLLACSGAYFANETGTPWEFHVQRGYRVVRKDGDLDGYAATFSLVPPLRLGLVLLLAGPRPPGSDLVAQAYDVLLPAMERALREAELSPAPPPSARPFAGYFTFSNLTFYEVRAGPAGELRLRQFGPRVEALVPLAFRTLALRHLRGRVFQLHVAREFPCTLPLGDSWLSLEAQHGQLVNFYPLDRHGLSPGFDVPGLNTYRVLRLLHKPVFKTQ", "length": 547, "header": "tr|A0A5G2QEZ1-1|A0A5G2QEZ1_PIG Isoform 1 of Lactamase beta like 1 OS=Sus scrofa OX=9823 GN=LACTBL1 PE=1 SV=1 CANONICAL=A0A5G2QEZ1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1/entry", "sequence": { "sequence": "MTGCFLWQYHLPKLKTGSLGPEVTSVPVRMCPQHPEPVPLAHPLPVLKEALEKVDRLLRHALSAPGLAAMSAVVIHNDTVLWTGNFGRKNGSDPASGPPNEYTMYRISSLSKIFPVLMLYRLWEEGIVASLDDPLERYASTFTINNPLGMVSAPGQQSLMDGLEEVGPAPRPSPVTLRRMASQLSGLPRRLRSTSLLWKGSTQEALSLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHTAQGDYQRWILENVLEPLGMVDTGFDLTPLVRARLAAGFYGSGRPAPLYDLGWYRPSGQMYSTTADLAKLAVALLGNGPQRLLRPDAAKTLLAPLLACSGAYFANETGTPWEFHVQRGYRVVRKDGDLDGYAATFSLVPPLRLGLVLLLAGPRPPGSDLVAQAYDVLLPAMERALREAELSPAPPPSARPFAGYFTFSNLTFYEVRAGPAGELRLRQFGPRVEALVPLAFRTLALRHLRGRVFQLHVAREFPCTLPLGDSWLSLEAQHGQLVNFYPLDRHGLSPGFDVPGLNTYRVLRLLHKPVFKTQ", "length": 547, "header": "tr|A0A5G2QEZ1-1|A0A5G2QEZ1_PIG Isoform 1 of Lactamase beta like 1 OS=Sus scrofa OX=9823 GN=LACTBL1 PE=1 SV=1 CANONICAL=A0A5G2QEZ1-1" }, "locus": { "chromosome": "6", "start_pos": 80885015, "end_pos": 80870869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084633.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084633.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060597.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060597.1" } ] } }, { "isoform_ac": "F1STY0-1", "url": "https://www.uniprot.org/uniprotkb/F1STY0/entry", "sequence": { "sequence": "MCPQHPEPVPLAHPLPVLKEALEKVDRLLRHALSAPGLAAMSAVVIHNDTVLWTGNFGRKNGSDPASGPPNEYTMYRISSLSKIFPVLMLYRLWEEGIVASLDDPLERYASTFTINNPLGMVSAPGQQSLMDGMASQLSGLPRRLRSTSLLWKGSTQEALSLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHTAQGDYQRWILENVLEPLGMVDTGFDLTPLVRARLAAGFYGSGRPAPLYDLGWYRPSGQMYSTTADLAKLAVALLGNGPQRLLRPDAAKTLLAPLLACSGAYFANETGTPWEFHVQRGYRVVRKDGDLDGYAATFSLVPPLRLGLVLLLAGPRPPGSDLVAQAYDVLLPAMERALREAELSPAPPPSARPFAGYFTFSNLTFYEVRAGPAGELRLRQFGPRVEALVPLAFRTLALRHLRGRVFQLHVAREFPCTLPLGDSWLSLEAQHGQLVNFYPLDRHGLSPGFDVPGLNTYRVLRLLHKPVFKTQ", "length": 501, "header": "tr|F1STY0-1|F1STY0_PIG Computationally mapped isoform of Lactamase beta like 1 OS=Sus scrofa OX=9823 GN=LACTBL1 PE=1 SV=2 CANONICAL=A0A5G2QEZ1-1" }, "locus": { "chromosome": "6", "start_pos": 80882391, "end_pos": 80870869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003920.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003920.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003830.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003830.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519718", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519718", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "R4GGE3-1", "protein_name": "Lactamase beta like 1", "gene_name": "LACTBL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRREFSAAMEGLQLRQASSSRGLLKLSVMEVKWIHVLVIFFFLLSVAMTGCFLWQYSLPKVEPDPSVMEVRSESVQMCPRYPEPVPLDHPIPILKDALEKVDLMLRQKIHNSGLPAMSAIVIYNDTVLWTGNFGKKNASDPFSVVPNEYTIYRIASVSKIFPTLMLYKMWEEGKVTSLDDPLERYAQNFAIKNPLGRFRESEQRYTADGLIFVEKGSIPLKPSPVTLRRMASQLSGLPRRLRSTSLLWKGSTQEALALLKDDVLVADPGTRCHYSNLAFSLMAHVLADHAADGQYQRWISENILDRLGMEDTGFDITPPIRSQMAVGFYSSQQPAPLYDLGWYRPSGQMYSTAADLAKLAMVFLGTYHRRLLEPDTVKTMLTPLFKCSTEYFANKTGTPWEINEQLGYDVIRKDGDLDGYSATFSLIPKLRLSFIVLMAGPRPQGGDLVTQTYEYLITAMETAFREAEKTLTPPPSPVPFVGYYTYSNLTFYEIKVGHGGVLVMQQFGPHAEELIPEKYRTIKLHHLEDRVFQVVFDKEFPCVLHLGSASISLETQNGQLFNFYPFDRKGLSPGFDAPGLNTYNVVRVLRKPVFYS", "length": 596 }, "evidence": [ { "id": "A0A5G2QEZ1", "url": "https://omabrowser.org/oma/group/A0A5G2QEZ1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "S4R213-1", "protein_name": "Lactamase, beta-like 1", "gene_name": "Lactbl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTRARQQPHLLKGKKKWFLWALSGFLFLLSATMTGCFLWQLYLPKLQTGSLKPEVPPAPVKMCPRHPELVPLAHPLPVLKEALEKVDGILRKAMLAPGLAAMSALVIHNDTVLWTGNFGRKNGSDPNSGTPNEYTMYRIASISKIFPVLMLYRLWEEGIVDSLDDPLERYASTFSINNPLGTAQGPGAQGPTGESEEMGSLPRPSPVTLRRMASQLSGLPRRLRGTSLLWRGSTQEALSLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHRAQGDYERWVSEQVLEPLGMSDTGFALTGTVRARLAAGFYGSGRSAPLYDLGWYRPSGQMYSTAADLARLAAALLGAGPRRLLRPDSLATLLAPLRACAHGYFASETGTPWEFHERRGYRVARKDGDLDGYAASLALVPPLRLGFVLLLAGPRPPTRDLVADALDTLLPALERALREAELAPAPPPRARPFAGFFTFANRTFYEVRAAGPRGELRLRQFGPRVEALVPAAFRSLALRHVRGRVFQLHVAREFPCALPLADAWLSLESQHGQLVRFYPLDRHGLAPGFDVPGLNTYGVLRLPRRPVFSSQ", "length": 581 }, "evidence": [ { "id": "A0A5G2QEZ1", "url": "https://omabrowser.org/oma/group/A0A5G2QEZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QEZ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 547, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QEZ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QEZ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QEZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEZ1" }, { "id": "PF00144", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-lactamase-related", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 401, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 344, "end_pos": 346 }, { "start_pos": 438, "end_pos": 440 }, { "start_pos": 77, "end_pos": 79 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF00-1", "uniprot_ac": "A0A5G2QF00", "uniprot_id": "A0A5G2QF00_PIG", "mass": { "chemical_mass": 27148.0, "monoisotopic_mass": 27148.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM176A", "type": "recommended", "evidence": [ { "id": "A0A5G2QF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00" } ] } ], "protein_names": [ { "name": "Transmembrane protein 176A", "type": "synonym", "evidence": [ { "id": "A0A5G2QF00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM176A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00", "locus": { "chromosome": "18", "start_pos": 6337837, "end_pos": 6342555, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016443", "url": "https://www.ensembl.org/id/ENSSSCG00000016443" } ] } } ], "crossref": [ { "id": "A0A5G2QF00", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016443", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016443", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523103", "url": "https://www.ncbi.nlm.nih.gov/gene/100523103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15756", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15756", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15756:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15756:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QF00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTSDSGEAGPGAPQPNRIEVHVHQESGLAKLLLSGCSLLQPLVLQPRTASQTLGSSRLLVASWVVQIVLGVLSGVLGGFLYISRSTTLRESGAPIWTGAVAVLAGVVAFVYEKRGGIYWLHWGSPSQTALALTAFSTATAAIVIAAANFNQYHYSFYDNICDVSPPWGPTWPPGTPNPDVSRQQLCILYLDKLKAMFTGLQVILLGVWVLLLLASLVPLCLCCWRRYQQKEHVEVPKSQLRLRAAGATPDP", "length": 252, "header": "tr|A0A5G2QF00-1|A0A5G2QF00_PIG Isoform 1 of Transmembrane protein 176A OS=Sus scrofa OX=9823 GN=TMEM176A PE=1 SV=2 CANONICAL=A0A5G2QF00-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00/entry", "sequence": { "sequence": "MGTSDSGEAGPGAPQPNRIEVHVHQESGLAKLLLSGCSLLQPLVLQPRTASQTLGSSRLLVASWVVQIVLGVLSGVLGGFLYISRSTTLRESGAPIWTGAVAVLAGVVAFVYEKRGGIYWLHWGSPSQTALALTAFSTATAAIVIAAANFNQYHYSFYDNICDVSPPWGPTWPPGTPNPDVSRQQLCILYLDKLKAMFTGLQVILLGVWVLLLLASLVPLCLCCWRRYQQKEHVEVPKSQLRLRAAGATPDP", "length": 252, "header": "tr|A0A5G2QF00-1|A0A5G2QF00_PIG Isoform 1 of Transmembrane protein 176A OS=Sus scrofa OX=9823 GN=TMEM176A PE=1 SV=2 CANONICAL=A0A5G2QF00-1" }, "locus": { "chromosome": "18", "start_pos": 6341743, "end_pos": 6338394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076573.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076573.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062290.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062290.2" } ] } }, { "isoform_ac": "A0A5G2RBI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBI4/entry", "sequence": { "sequence": "MGTSDSGEAGPGAPQPNRIEVHVHQESGLAKLLLSGCSLLQPLVLQPRTASQTLGSSRLLVASWVVQIVLGVLSGVLGGFLYISRSTTLRESGAPIWTGAVAVLAGVVAFVYEKRGGIYWALLRTALALTAFSTATAAIVIAAANFNQYHYSFYDNICDVSPPWGPTWPPGTPNPDVSRQQLCILYLDKLKAMFTGLQVILLGVWVLLLLASLVPLCLCCWRRYQQKEHVEVPKSQLRLRAAGATPDP", "length": 248, "header": "tr|A0A5G2RBI4-1|A0A5G2RBI4_PIG Computationally mapped isoform of Transmembrane protein 176A OS=Sus scrofa OX=9823 GN=TMEM176A PE=1 SV=1 CANONICAL=A0A5G2QF00-1" }, "locus": { "chromosome": "18", "start_pos": 6341743, "end_pos": 6338394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091408.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091408.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067973.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 171, "start_aa": "Thr", "end_pos": 171, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr171", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 249, "start_aa": "Thr", "end_pos": 249, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr249", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of dendritic cell differentiation", "id": "GO:2001199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001199", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 252, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF00" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 171, 249 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF18-1", "uniprot_ac": "A0A5G2QF18", "uniprot_id": "A0A5G2QF18_PIG", "mass": { "chemical_mass": 41852.0, "monoisotopic_mass": 41852.0 }, "refseq": { "ac": "XP_020950386", "name": "leukocyte antigen CD37 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950386" }, "gene_names": [ { "name": "CD37", "type": "recommended", "evidence": [ { "id": "A0A5G2QF18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18" } ] }, { "name": "CD37", "type": "synonym", "evidence": [ { "id": "XP_020950386", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950386" } ] } ], "protein_names": [ { "name": "Leukocyte antigen CD37", "type": "recommended", "evidence": [ { "id": "A0A5G2QF18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18/entry#names_and_taxonomy" } ] }, { "name": "leukocyte antigen CD37 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020950386", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950386" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18", "locus": { "chromosome": "6", "start_pos": 54448188, "end_pos": 54440727, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033849", "url": "https://www.ensembl.org/id/ENSSSCG00000033849" } ] } } ], "crossref": [ { "id": "A0A5G2QF18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033849", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033849", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624694", "url": "https://www.ncbi.nlm.nih.gov/gene/100624694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282:SF263", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282:SF263", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950386", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950386", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZT54", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZT54-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4D5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4D5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4D5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4D5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAQASCLSFIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFVPLQIWSKALAISGILTMGLALLGCVGALKEFRCLLGLYFGALLLLFATQITLGILISTQRVQLVRKVKDIVLKTIQNYRVHPEETAAEESWDYVQFQLRCCGWNSPRDWFRIPTLRSNESDVHLVPCSCYNSSATNDSAIFDTFYLSQFSRPRPQAQSGHNADICVVPANSHIYREGCEGSLNNWLHNNLISIVGICLGVGLLEVSAAGLSFLVPRSMFHREPQPQVPCAYCSSPRPGPNTDGCCGRCGVLSSSGRSCSLWGGWGLAGACPNWGDRAPQGKLPMTLGPWPLWDQDEEHLETGSTGAEVVAEVEFEAKMEREIDEPPE", "length": 379, "header": "tr|A0A5G2QF18-1|A0A5G2QF18_PIG Isoform 1 of Leukocyte antigen CD37 OS=Sus scrofa OX=9823 GN=CD37 PE=3 SV=1 CANONICAL=A0A5G2QF18-1" }, "isoforms": [ { "isoform_ac": "A0A286ZT54-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT54/entry", "sequence": { "sequence": "MTSDGKEKMSAQASCLSFIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFVPLQIWSKALAISGILTMGLALLGCVGALKEFRCLLGLLVRKVKDIVLKTIQNYRVHPEETAAEESWDYVQFQLRCCGWNSPRDWFRIPTLRSNESDVHLVPCSCYNSSATNDSAIFDTFYLSQFSRPRPQAQSGHNADICVVPANSHIYREGCEGSLNNWLHNNLISIVGICLGVGLLELSFMTLSMFLCRNLDHVYDRLARYR", "length": 264, "header": "tr|A0A286ZT54-1|A0A286ZT54_PIG Computationally mapped isoform of Tetraspanin OS=Sus scrofa OX=9823 GN=CD37 PE=3 SV=3 CANONICAL=A0A5G2QF18-1" }, "locus": { "chromosome": "6", "start_pos": 54447862, "end_pos": 54440913, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066023.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066023.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034751.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034751.3" } ] } }, { "isoform_ac": "A0A287A4D5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4D5/entry", "sequence": { "sequence": "MTSDGKEKMSAQASCLSFIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFVPLQIWSKALAISGILTMGLALLGCVGALKEFRCLLGLYFGALLLLFATQITLGILISTQRVQLVRKVKDIVLKTIQNYRVHPEETAAEESWDYVQFQLRCCGWNSPRDWFRIPTLRSNESDVHLVPCSCYNSSATNDSAIFDTFYLSQFSRPRPQAQSGHNADICVVPANSHIYREGCEGSLNNWLHNNLISIVGICLGVGLLELSFMTLSMFLCRNLDHVYDRLARYR", "length": 289, "header": "tr|A0A287A4D5-1|A0A287A4D5_PIG Computationally mapped isoform of Tetraspanin OS=Sus scrofa OX=9823 GN=CD37 PE=3 SV=1 CANONICAL=A0A5G2QF18-1" }, "locus": { "chromosome": "6", "start_pos": 54447862, "end_pos": 54440913, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047486.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047486.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038758.1" } ] } }, { "isoform_ac": "A0A5G2QF18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18/entry", "sequence": { "sequence": "MSAQASCLSFIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFVPLQIWSKALAISGILTMGLALLGCVGALKEFRCLLGLYFGALLLLFATQITLGILISTQRVQLVRKVKDIVLKTIQNYRVHPEETAAEESWDYVQFQLRCCGWNSPRDWFRIPTLRSNESDVHLVPCSCYNSSATNDSAIFDTFYLSQFSRPRPQAQSGHNADICVVPANSHIYREGCEGSLNNWLHNNLISIVGICLGVGLLEVSAAGLSFLVPRSMFHREPQPQVPCAYCSSPRPGPNTDGCCGRCGVLSSSGRSCSLWGGWGLAGACPNWGDRAPQGKLPMTLGPWPLWDQDEEHLETGSTGAEVVAEVEFEAKMEREIDEPPE", "length": 379, "header": "tr|A0A5G2QF18-1|A0A5G2QF18_PIG Isoform 1 of Leukocyte antigen CD37 OS=Sus scrofa OX=9823 GN=CD37 PE=3 SV=1 CANONICAL=A0A5G2QF18-1" }, "locus": { "chromosome": "6", "start_pos": 54447381, "end_pos": 54441587, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071630.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071630.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063306.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063306.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18" } ], "pmid": "" }, { "name": "immunological synapse", "id": "GO:0001772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001772", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 379, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF18" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 183, "end_pos": 185 }, { "start_pos": 188, "end_pos": 190 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF47-1", "uniprot_ac": "A0A5G2QF47", "uniprot_id": "A0A5G2QF47_PIG", "mass": { "chemical_mass": 14662.0, "monoisotopic_mass": 14662.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QF47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47", "locus": {} } ], "crossref": [ { "id": "A0A5G2QF47", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF47", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044432", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044432", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QF47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSENVLPIFSSRSSMVSCLTFKSFSHFEFILVHGVRVCSSFIDLRAGVQFSQHDLLKRLSFSHFMFLPPLSKLLTIGVWVSFWVLYSVPLVCMSVLVPVPHVLMTVALEYCLKSGRVMPPACFLFLRID", "length": 129, "header": "tr|A0A5G2QF47-1|A0A5G2QF47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF47-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47/entry", "sequence": { "sequence": "MSENVLPIFSSRSSMVSCLTFKSFSHFEFILVHGVRVCSSFIDLRAGVQFSQHDLLKRLSFSHFMFLPPLSKLLTIGVWVSFWVLYSVPLVCMSVLVPVPHVLMTVALEYCLKSGRVMPPACFLFLRID", "length": 129, "header": "tr|A0A5G2QF47-1|A0A5G2QF47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF47-1" }, "locus": { "chromosome": "13", "start_pos": 129454677, "end_pos": 129454291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079293.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079293.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063342.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063342.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF47" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF47-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF47-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF47" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF63-1", "uniprot_ac": "A0A5G2QF63", "uniprot_id": "A0A5G2QF63_PIG", "mass": { "chemical_mass": 8847.0, "monoisotopic_mass": 8847.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QF63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63", "locus": {} } ], "crossref": [ { "id": "A0A5G2QF63", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF63", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044100", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044100", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QF63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLSFMSESVWPMFSSRSLIVSGLVSRSLIHFEFIFVYGVRKCSNFILFHVAVQFSQHHLLNRLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QF63-1|A0A5G2QF63_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF63-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63/entry", "sequence": { "sequence": "MLLSFMSESVWPMFSSRSLIVSGLVSRSLIHFEFIFVYGVRKCSNFILFHVAVQFSQHHLLNRLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QF63-1|A0A5G2QF63_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF63-1" }, "locus": { "chromosome": "14", "start_pos": 93981014, "end_pos": 93980270, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082258.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082258.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062365.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062365.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF63-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 76, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF63-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF63" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF79-1", "uniprot_ac": "A0A5G2QF79", "uniprot_id": "A0A5G2QF79_PIG", "mass": { "chemical_mass": 80944.0, "monoisotopic_mass": 80944.0 }, "refseq": { "ac": "XP_020925365", "name": "leucine-, glutamate- and lysine-rich protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925365" }, "gene_names": [ { "name": "LEKR1", "type": "recommended", "evidence": [ { "id": "A0A5G2QF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79" } ] }, { "name": "LEKR1", "type": "synonym", "evidence": [ { "id": "XP_020925365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925365" } ] } ], "protein_names": [ { "name": "Leucine, glutamate and lysine rich 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QF79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79/entry#names_and_taxonomy" } ] }, { "name": "leucine-, glutamate- and lysine-rich protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925365" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LEKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79", "locus": { "chromosome": "13", "start_pos": 96879731, "end_pos": 96652441, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026579", "url": "https://www.ensembl.org/id/ENSSSCG00000026579" } ] } } ], "crossref": [ { "id": "A0A5G2QF79", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF79", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026579", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026579", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627541", "url": "https://www.ncbi.nlm.nih.gov/gene/100627541", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627541", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627541", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QF79", "url": "https://www.orthodb.org/?gene=A0A5G2QF79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34251:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34251:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020925365", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925365", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QF79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRHVPMHALPEEIQKMSPEEKVCKYCGVSYLILHEFKAMEEKVKVMEKEMKFYQGSVEREKRLEEKLQSLSQDFEQYKTDNESQTERIRDASMQLKSQQNEFQRVQKELSHLQQELKIKQRQSQIFSQRLTEYKYFWNKTLSLLTFTKRELNRIKNEVYDNFQNWTSLKGEVFLQIKSITETALTEIKILNKSLTVSQRNNVCLEEEMKNLKLLSDAAILRSQQIQISKQQEVNLQTRCHDLQEEVLDLQCQVEALGLKLQKAVTEMDSYKEKFTSKSLEADECQRELKKLKFESIISDSRHTRLLKEKEESLMTCQQIYKTLQEELTAKERQEEDFKRRINLADNELGITKTLLNQTREEVATLKNERASMLISHQKSIEQLQETLRQKLLSYDNWREKIEAEFAKERAQHLAEFQEQALLFKEEAKLELNTEKEKHQEIIQKYKKEQEELQMKISDLIEGATRELRLKVAALEEKLHESHVKYSKESESKEKEIENLKNLVAEFESRLKKEIDSNDSVSEDLRKEMKQKSDVLERVMLAQTQLIQQFNQSQEENTFLQETVRRECEERFELTEALSQAREQLLELKKLGSRLPLSTCSLSQGSLTSSAAASSSQGERRPARLNSEKGIKIPSLHAVSKPTTSPASAQPIRVSSSGLPTLPQPHPPRGGPSSVSETRQRLAAILQRRLSQQ", "length": 693, "header": "tr|A0A5G2QF79-1|A0A5G2QF79_PIG Isoform 1 of Leucine, glutamate and lysine rich 1 OS=Sus scrofa OX=9823 GN=LEKR1 PE=4 SV=1 CANONICAL=A0A5G2QF79-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79/entry", "sequence": { "sequence": "MDRHVPMHALPEEIQKMSPEEKVCKYCGVSYLILHEFKAMEEKVKVMEKEMKFYQGSVEREKRLEEKLQSLSQDFEQYKTDNESQTERIRDASMQLKSQQNEFQRVQKELSHLQQELKIKQRQSQIFSQRLTEYKYFWNKTLSLLTFTKRELNRIKNEVYDNFQNWTSLKGEVFLQIKSITETALTEIKILNKSLTVSQRNNVCLEEEMKNLKLLSDAAILRSQQIQISKQQEVNLQTRCHDLQEEVLDLQCQVEALGLKLQKAVTEMDSYKEKFTSKSLEADECQRELKKLKFESIISDSRHTRLLKEKEESLMTCQQIYKTLQEELTAKERQEEDFKRRINLADNELGITKTLLNQTREEVATLKNERASMLISHQKSIEQLQETLRQKLLSYDNWREKIEAEFAKERAQHLAEFQEQALLFKEEAKLELNTEKEKHQEIIQKYKKEQEELQMKISDLIEGATRELRLKVAALEEKLHESHVKYSKESESKEKEIENLKNLVAEFESRLKKEIDSNDSVSEDLRKEMKQKSDVLERVMLAQTQLIQQFNQSQEENTFLQETVRRECEERFELTEALSQAREQLLELKKLGSRLPLSTCSLSQGSLTSSAAASSSQGERRPARLNSEKGIKIPSLHAVSKPTTSPASAQPIRVSSSGLPTLPQPHPPRGGPSSVSETRQRLAAILQRRLSQQ", "length": 693, "header": "tr|A0A5G2QF79-1|A0A5G2QF79_PIG Isoform 1 of Leucine, glutamate and lysine rich 1 OS=Sus scrofa OX=9823 GN=LEKR1 PE=4 SV=1 CANONICAL=A0A5G2QF79-1" }, "locus": { "chromosome": "13", "start_pos": 96879725, "end_pos": 96654968, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070195.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070195.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063377.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063377.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627541", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627541", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF79-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 693, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF79-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF79" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF80-1", "uniprot_ac": "A0A5G2QF80", "uniprot_id": "A0A5G2QF80_PIG", "mass": { "chemical_mass": 32574.0, "monoisotopic_mass": 32574.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MARVEL domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80", "locus": {} } ], "crossref": [ { "id": "A0A5G2QF80", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF80", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041319", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041319", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QF80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VGSHPRALLQCYFLHLLQLLSTCVAFSLVVIAGAWNEDLNNSSVFIWCFCFTVTLIILIVELLELDSAFYSWDSFLIVYASYFTLFCLSTSIAYSIIYLQFIPDGSPRNYAIAATAFSCIASVAYAIEVVWTCVHTEATSCSFPGLLKRLEIFVACVIFTFISNTSLYWHHLALRWYVAVYSICFILVTTAILGHKCKCDIRPLFTCFVWQTLPSTLFYFTAVVLWPLYQFNEEFGGQPQRSSNATCSSVIFMCVWDQRLAVAILTAINLLIYMVDLVYSIYLFCVS", "length": 287, "header": "tr|A0A5G2QF80-1|A0A5G2QF80_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QF80-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80/entry", "sequence": { "sequence": "VGSHPRALLQCYFLHLLQLLSTCVAFSLVVIAGAWNEDLNNSSVFIWCFCFTVTLIILIVELLELDSAFYSWDSFLIVYASYFTLFCLSTSIAYSIIYLQFIPDGSPRNYAIAATAFSCIASVAYAIEVVWTCVHTEATSCSFPGLLKRLEIFVACVIFTFISNTSLYWHHLALRWYVAVYSICFILVTTAILGHKCKCDIRPLFTCFVWQTLPSTLFYFTAVVLWPLYQFNEEFGGQPQRSSNATCSSVIFMCVWDQRLAVAILTAINLLIYMVDLVYSIYLFCVS", "length": 287, "header": "tr|A0A5G2QF80-1|A0A5G2QF80_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QF80-1" }, "locus": { "chromosome": "7", "start_pos": 54146502, "end_pos": 54144882, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074895.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074895.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062855.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062855.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 287, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF80" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QF80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF80" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 137, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF81-1", "uniprot_ac": "A0A5G2QF81", "uniprot_id": "A0A5G2QF81_PIG", "mass": { "chemical_mass": 8567.0, "monoisotopic_mass": 8567.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QF81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81", "locus": {} } ], "crossref": [ { "id": "A0A5G2QF81", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041850", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041850", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QF81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SSICHCGGCGGCGGCGGGCGGCNSCTSCRCYRVGCCSGCCPCCCGCCGGCCSTPVVCCYRRTCSCNSCGCGKGCCQQKSCCQQKCCR", "length": 87, "header": "tr|A0A5G2QF81-1|A0A5G2QF81_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF81-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81/entry", "sequence": { "sequence": "SSICHCGGCGGCGGCGGGCGGCNSCTSCRCYRVGCCSGCCPCCCGCCGGCCSTPVVCCYRRTCSCNSCGCGKGCCQQKSCCQQKCCR", "length": 87, "header": "tr|A0A5G2QF81-1|A0A5G2QF81_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QF81-1" }, "locus": { "chromosome": "15", "start_pos": 129108215, "end_pos": 129107057, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068650.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068650.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062385.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062385.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 87, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF81" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QF92-1", "uniprot_ac": "A0A5G2QF92", "uniprot_id": "A0A5G2QF92_PIG", "mass": { "chemical_mass": 41948.0, "monoisotopic_mass": 41948.0 }, "refseq": { "ac": "XP_020947870", "name": "ethanolamine kinase 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947870" }, "gene_names": [ { "name": "ETNK1", "type": "recommended", "evidence": [ { "id": "A0A5G2QF92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ] }, { "name": "ETNK1", "type": "synonym", "evidence": [ { "id": "XP_020947870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947870" } ] } ], "protein_names": [ { "name": "ethanolamine kinase", "type": "recommended", "evidence": [ { "id": "A0A5G2QF92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.82", "type": "synonym", "evidence": [ { "id": "A0A5G2QF92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92/entry#names_and_taxonomy" } ] }, { "name": "ethanolamine kinase 1", "type": "synonym", "evidence": [ { "id": "XP_020947870", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947870" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ETNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92", "locus": { "chromosome": "5", "start_pos": 50914814, "end_pos": 50970697, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039397", "url": "https://www.ensembl.org/id/ENSSSCG00000039397" } ] } } ], "crossref": [ { "id": "A0A5G2QF92", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF92", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039397", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039397", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05157", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05157", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110260724", "url": "https://www.ncbi.nlm.nih.gov/gene/110260724", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260724", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260724", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FALIPKY", "url": "https://omabrowser.org/oma/group/FALIPKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QF92", "url": "https://www.orthodb.org/?gene=A0A5G2QF92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22603", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22603", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22603:SF91", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22603:SF91", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01633", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01633", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483213", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947870", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947870", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANYIHVPPGSPEVPKLNVTVQDQEEQRCREGALSLLQHLRPHWDPQEVTLQLFTDGITNKLIGCYVGNTMEDVVLVRIYGNKTELLVDREEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPKHVCNPAIFRLIARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFVDEDINKRFLSDIPSPQILQEEMTWMKDILSNLGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPSRELQGQWLRSYLEAYKEYKGFGTEVTEKEVEILFIQVNQFALASHFFWGLWALIQAKYSTIDFDFLGYAIVRFNQYFKMKPEVTALKVPE", "length": 363, "header": "tr|A0A5G2QF92-1|A0A5G2QF92_PIG Isoform 1 of ethanolamine kinase OS=Sus scrofa OX=9823 GN=ETNK1 PE=3 SV=1 CANONICAL=A0A5G2QF92-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92/entry", "sequence": { "sequence": "MANYIHVPPGSPEVPKLNVTVQDQEEQRCREGALSLLQHLRPHWDPQEVTLQLFTDGITNKLIGCYVGNTMEDVVLVRIYGNKTELLVDREEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPKHVCNPAIFRLIARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFVDEDINKRFLSDIPSPQILQEEMTWMKDILSNLGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPSRELQGQWLRSYLEAYKEYKGFGTEVTEKEVEILFIQVNQFALASHFFWGLWALIQAKYSTIDFDFLGYAIVRFNQYFKMKPEVTALKVPE", "length": 363, "header": "tr|A0A5G2QF92-1|A0A5G2QF92_PIG Isoform 1 of ethanolamine kinase OS=Sus scrofa OX=9823 GN=ETNK1 PE=3 SV=1 CANONICAL=A0A5G2QF92-1" }, "locus": { "chromosome": "5", "start_pos": 50970457, "end_pos": 50920373, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067611.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067611.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063392.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063392.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260724", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260724", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "resource": "Reactome", "description": "Synthesis of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LLY9-1", "protein_name": "ethanolamine kinase", "gene_name": "Etnk1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANYIHVPPGSPEVPKLDVTVQDQEEQRCRDGALSLLQHLRPHWDPREVTLQLFTDGITNKLIACYVGDTMDDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPQHVCNPAIFRLIARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFADEDINKRFLSEIPSPQLLQEEMTWMKEILSSLGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPDRELQGQWLRSYLEAYKEYKGFGSDVTEKEVETLFIQVNQFALASHFFWGLWALIQAKYSTIEFDFLGYAIVRFNQYFKMKPEVTALKMPE", "length": 363 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NMC4-1", "protein_name": "ethanolamine kinase", "gene_name": "ETNK1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSNYIHVPPGSPEVPKLDITVSEREGPGCRQGALQLLRRLRPHWRPEEVTLQLFTDGITNKLIGCYVGDTTDDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFMQGEALDPEHVCNPDIFRLIARQLAKIHTIHAHNGWIPKSNLWLKMGKYFSLIPTEFADEEVNKRFLSEIPSPQVLQEEMAWMKERLSNLGSPVVLCHNDLLCKNIIYNKKRGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVNEVDYSLYPNRKLQEQWLRSYLEAYKEYKGFGTEVSEKEVEVLYVQVNQFALASHFFWGLWALIQAKYSTIDFDFLGYAVVRFNQYFKMKLEVMMLTLPE", "length": 363 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P54352-2", "protein_name": "Ethanolamine kinase", "gene_name": "eas", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGTETKSNSYTGQISTSGGNPKVMKDSLSLVRQTVNQQTLSLSQSNQVQNQLNSHSNSNSYPNPSGSENKNENEQNSRDIRAKPEDKSRKEAIVPFVPIFVEEADVIQGAKELLKVIRPTWDLSHVEFKSFTDGITNKLVGCFHKEISKLNDENGGSYLPIKTQGLSPVQSEDPVIIEKEDDDEFTDDRAADDGSPVQYSDNVVLVRIYGNKTDLLIDRKAETQNFLLLHTYGLAPSLYATFKNGLVYEYVPGTTLNTDSVLCPEIWPLVARRMAEMHRKVRKHGDSSATKPMPMIWKKTQSFLDLVPERFSDAEKHKRVKETFLPIGRLREEFNKLYEYLEALDSPIVFSHNDLLLGNVIYTQSLNTVNFIDYEYADYNFQAFDIGNHFAEMCGVDEVDYSRYPKREFQLQWLRVYLEEYLQRSNIQNDEVELLYVQVNQFALASHIFWTVWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSLTAAKNNK", "length": 495 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5RGY0-1", "protein_name": "ethanolamine kinase", "gene_name": "etnk1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANYIHVPDGSPAVPKLDVTVDEHDYRAGALKLIKTLRPHWKPSEVKMKTFTDGITNKLIGCYVGGSMQEVVLVRVYGNKTELFVDRENEVKSFRVLQAHRCAPRLYCTFNNGLCYEFLQGVALEPEHIRSPAIFRHIARQMAKYHAIHAHNGWVPQSGLWLKMSKFFSLVPSHFEDPEMDQRLNNEVPSAACLRDEMIWLQQNLSKLGSPVVLCHNDLLCKNIIYNQKEGNVKFIDYEYAGYNYQAFDIGNHFNEFAGLNEVDYTLYPDRELQMQWLRAYLEAYKEYKSQGSQVSNTEVELLYVQVNRFALASHFFWGLWALIQAQYSTIDFDFLGYAVLRFNQYFKMKPEVMSLHLPE", "length": 360 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8L518-1", "protein_name": "Probable choline kinase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTMGGTEKNVENKQYRLPREVKEALQAIASEWEDVIDSKALQVIPLKGAMTNEVFQIKWPTREKGPSRKVLVRIYGEGVEIFFDREDEIRTFEFMSKHGHGPLLLGRFGNGRIEEFLHARTLSACDLRDPEISGRIATRMKEFHGLEMPGAKKALLWDRLRNWLTACKRLASPEEAKSFRLDVMEMEINMLEKSLFDNDENIGFCHNDLQYGNIMMDEETKAITIIDYEYSCYNPVAYDIANHFCEMAADYHTETPHIMDYSKYPGVEERQRFLKTYMSYSDEKPSDTMVKKLLEDVEKYTLASHLIWGLWGIISEHVNEIDFDYMEYARQRFEQYWLTKPRLLAASEHK", "length": 350 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9D4V0-1", "protein_name": "Ethanolamine kinase 1", "gene_name": "Etnk1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANYIHVPPGSPEVPKLDVTVQDQEEQRCRDGALSLLRHLRPHWDPREVTLQLFTDGITNKLIACYVGDTMEDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPQHVCNPAIFRLIARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFADENINKRFLSEIPSPQLLQEEMTWMKELLSSLGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPDRELQGQWLRSYLEAYKEYKGFGSDVTEKEVETLFIQVNQFALASHFFWGLWALIQAKYSTIEFDFLGYAVVRFNQYFKMKPEVTALKMPE", "length": 363 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBU6-1", "protein_name": "Ethanolamine kinase 1", "gene_name": "ETNK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLCGRPRSSSDNRNFLRERAGLSSAAVQTRIGNSAASRRSPAARPPVPAPPALPRGRPGTEGSTSLSAPAVLVVAVAVVVVVVSAVAWAMANYIHVPPGSPEVPKLNVTVQDQEEHRCREGALSLLQHLRPHWDPQEVTLQLFTDGITNKLIGCYVGNTMEDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPKHVCNPAIFRLIARQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFADEDINKRFLSDIPSSQILQEEMTWMKEILSNLGSPVVLCHNDLLCKNIIYNEKQGDVQFIDYEYSGYNYLAYDIGNHFNEFAGVSDVDYSLYPDRELQSQWLRAYLEAYKEFKGFGTEVTEKEVEILFIQVNQFALASHFFWGLWALIQAKYSTIEFDFLGYAIVRFNQYFKMKPEVTALKVPE", "length": 452 }, "evidence": [ { "id": "A0A5G2QF92", "url": "https://omabrowser.org/oma/group/A0A5G2QF92/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "pmid": "" }, { "name": "ethanolamine kinase activity", "id": "GO:0004305", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004305", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phosphatidylethanolamine biosynthetic process", "id": "GO:0006646", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006646", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1483222", "name": "ETA is phosphorylated to PETA by CHK/ETNK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-1498751" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1483222", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483222" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1498751", "participant_name": "ETA [cytosol]", "crossref": [ { "id": "57603", "database": "ChEBI", "url": "" }, { "id": "ZINC000008214617", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QF92-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 363, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QF92-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QF92" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFA5-1", "uniprot_ac": "A0A5G2QFA5", "uniprot_id": "A0A5G2QFA5_PIG", "mass": { "chemical_mass": 8436.0, "monoisotopic_mass": 8436.0 }, "refseq": {}, "gene_names": [ { "name": "WDFY2", "type": "recommended", "evidence": [ { "id": "A0A5G2QFA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDFY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5", "locus": { "chromosome": "11", "start_pos": 16092698, "end_pos": 16195134, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040538", "url": "https://www.ensembl.org/id/ENSSSCG00000040538" } ] } } ], "crossref": [ { "id": "A0A5G2QFA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040538", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040538", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR042234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46189:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46189:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QFA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEIQPKPLTRKPILLQRVEGSQEVVNMAVIVPKEEGVISVSEDRSSGKHCKHTPLASSLPRTRNSPMRWNTWM", "length": 75, "header": "tr|A0A5G2QFA5-1|A0A5G2QFA5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=WDFY2 PE=4 SV=1 CANONICAL=A0A5G2QFA5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5/entry", "sequence": { "sequence": "MAAEIQPKPLTRKPILLQRVEGSQEVVNMAVIVPKEEGVISVSEDRSSGKHCKHTPLASSLPRTRNSPMRWNTWM", "length": 75, "header": "tr|A0A5G2QFA5-1|A0A5G2QFA5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=WDFY2 PE=4 SV=1 CANONICAL=A0A5G2QFA5-1" }, "locus": { "chromosome": "11", "start_pos": 16272169, "end_pos": 16270715, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099503.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099503.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080812.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080812.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 75, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFA5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFD3-1", "uniprot_ac": "A0A5G2QFD3", "uniprot_id": "A0A5G2QFD3_PIG", "mass": { "chemical_mass": 111573.0, "monoisotopic_mass": 111573.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042135", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042135", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATIIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKG", "length": 952, "header": "tr|A0A5G2QFD3-1|A0A5G2QFD3_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QFD3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATIIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKG", "length": 952, "header": "tr|A0A5G2QFD3-1|A0A5G2QFD3_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QFD3-1" }, "locus": { "chromosome": "X", "start_pos": 24499994, "end_pos": 24496743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079392.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079392.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063437.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063437.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 839, "end_pos": 841, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFD3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 952, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFD3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFD3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFD3" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 489, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 839, "end_pos": 841 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFF7-1", "uniprot_ac": "A0A5G2QFF7", "uniprot_id": "A0A5G2QFF7_PIG", "mass": { "chemical_mass": 27897.0, "monoisotopic_mass": 27897.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051409", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051409", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESEASPRLHQEAEPAACAAAAALPSVVSLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 267, "header": "tr|A0A5G2QFF7-1|A0A5G2QFF7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QFF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7/entry", "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESEASPRLHQEAEPAACAAAAALPSVVSLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 267, "header": "tr|A0A5G2QFF7-1|A0A5G2QFF7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QFF7-1" }, "locus": { "chromosome": "13", "start_pos": 79868717, "end_pos": 79867764, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090738.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090738.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062936.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062936.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 99, "start_aa": "Thr", "end_pos": 99, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr99", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 267, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFF7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 99 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFH0-1", "uniprot_ac": "A0A5G2QFH0", "uniprot_id": "A0A5G2QFH0_PIG", "mass": { "chemical_mass": 10621.0, "monoisotopic_mass": 10621.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045321", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045321", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QFH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMELRFSPRHLPNLTNPNRPIPSNTLYITHNNCLFISNTHLPRRELQMDHSLPARKQSINIVHLPVYPCRARPILRILHIPRNNIPSSSDN", "length": 91, "header": "tr|A0A5G2QFH0-1|A0A5G2QFH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFH0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0/entry", "sequence": { "sequence": "MMELRFSPRHLPNLTNPNRPIPSNTLYITHNNCLFISNTHLPRRELQMDHSLPARKQSINIVHLPVYPCRARPILRILHIPRNNIPSSSDN", "length": 91, "header": "tr|A0A5G2QFH0-1|A0A5G2QFH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFH0-1" }, "locus": { "chromosome": "X", "start_pos": 22065748, "end_pos": 22064783, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081161.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081161.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063482.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063482.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 91, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFH2-1", "uniprot_ac": "A0A5G2QFH2", "uniprot_id": "A0A5G2QFH2_PIG", "mass": { "chemical_mass": 48301.0, "monoisotopic_mass": 48301.0 }, "refseq": {}, "gene_names": [ { "name": "CXorf58", "type": "recommended", "evidence": [ { "id": "A0A5G2QFH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2" } ] } ], "protein_names": [ { "name": "Chromosome X open reading frame 58", "type": "synonym", "evidence": [ { "id": "A0A5G2QFH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CXorf58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2", "locus": { "chromosome": "X", "start_pos": 20051343, "end_pos": 20017994, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012175", "url": "https://www.ensembl.org/id/ENSSSCG00000012175" } ] } } ], "crossref": [ { "id": "A0A5G2QFH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012175", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012175", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR33504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33504:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33504:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QFH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GRW7", "url": "https://www.uniprot.org/uniprotkb/K7GRW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GRW7-1", "url": "https://www.uniprot.org/uniprotkb/K7GRW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKPRLREVICGRSYRRKVGSQDSNLSSLALKPVIAKYFIVRKMSRSMKTSVTGVPKSENPALGKGPKVPLSNTVKTKGKQQNKDISAYRIQRAWLSHLDKTMFQLLKHTICAAEHHVTYEILKKVSPLEAELVKDPCMKCKVRFRFSGEKFPPFIVFKIFLQTEGHGYKYFSGKNLKPSSEALHSYPLLSRRTFLNLVIHGQCLRKKILATGGQTFFKPLSQAVVDVCKIMGKKKFYHQIMEDERLFQKFKITDEIDIVTLKDYMQYSSLLDETPASSGGRNNYWRRLNLENIPRTMIMYDIVDYAETGIISNRLKKEMKYLLQRTKTEEIHQRQLQIVSEVRRPSCFSSLHPLYRPYQQQSQIKHLGRRSKQAQMKVEKMKKAYKMAKEKDASAGTEPQKDIPGPKVNHPLHPIF", "length": 417, "header": "tr|A0A5G2QFH2-1|A0A5G2QFH2_PIG Isoform 1 of Chromosome X open reading frame 58 OS=Sus scrofa OX=9823 GN=CXorf58 PE=4 SV=2 CANONICAL=A0A5G2QFH2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2/entry", "sequence": { "sequence": "MKKPRLREVICGRSYRRKVGSQDSNLSSLALKPVIAKYFIVRKMSRSMKTSVTGVPKSENPALGKGPKVPLSNTVKTKGKQQNKDISAYRIQRAWLSHLDKTMFQLLKHTICAAEHHVTYEILKKVSPLEAELVKDPCMKCKVRFRFSGEKFPPFIVFKIFLQTEGHGYKYFSGKNLKPSSEALHSYPLLSRRTFLNLVIHGQCLRKKILATGGQTFFKPLSQAVVDVCKIMGKKKFYHQIMEDERLFQKFKITDEIDIVTLKDYMQYSSLLDETPASSGGRNNYWRRLNLENIPRTMIMYDIVDYAETGIISNRLKKEMKYLLQRTKTEEIHQRQLQIVSEVRRPSCFSSLHPLYRPYQQQSQIKHLGRRSKQAQMKVEKMKKAYKMAKEKDASAGTEPQKDIPGPKVNHPLHPIF", "length": 417, "header": "tr|A0A5G2QFH2-1|A0A5G2QFH2_PIG Isoform 1 of Chromosome X open reading frame 58 OS=Sus scrofa OX=9823 GN=CXorf58 PE=4 SV=2 CANONICAL=A0A5G2QFH2-1" }, "locus": { "chromosome": "X", "start_pos": 20051340, "end_pos": 20018378, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081310.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081310.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062485.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062485.2" } ] } }, { "isoform_ac": "K7GRW7-1", "url": "https://www.uniprot.org/uniprotkb/K7GRW7/entry", "sequence": { "sequence": "MKKPRLREVICGRSYRRKVGSQDSNLSSLALKPVIAKYFIVRKMSRSMKTSVTGVPKSENPALGKGPKVPLSNTVKTKGKQQNKDISAYRIQRAWLSHLDKTMFQLLKHTICAAEHHVTYEILKKVSPLEAELVKDPCMKCKVRFRFSGEKFPPFIVFKIFLQTEGHGYKYFSGKNLKPSSEAVVDVCKIMGKKKFYHQIMEDERLFQKFKITDEIDIVTLKDYMQYSSLLDETPASSGGRNNYWRRLNLENIPRTMIMYDIVDYAETGIISNRLKKEMKYLLQRTKTEEIHQRQLQIVSEVRRPSCFSSLHPLYRPYQQQSQIKHLGRRSKQAQMKVEKMKKAYKMAKEKDASAGTEPQKDIPGPKVNHPLHPIF", "length": 376, "header": "tr|K7GRW7-1|K7GRW7_PIG Computationally mapped isoform of Chromosome X open reading frame 58 OS=Sus scrofa OX=9823 GN=CXorf58 PE=4 SV=4 CANONICAL=A0A5G2QFH2-1" }, "locus": { "chromosome": "X", "start_pos": 20051340, "end_pos": 20018378, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032599.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032599.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030647.4", "url": "https://www.ensembl.org/id/ENSSSCP00000030647.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFH2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 417, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFH2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFH6-1", "uniprot_ac": "A0A5G2QFH6", "uniprot_id": "A0A5G2QFH6_PIG", "mass": { "chemical_mass": 29197.0, "monoisotopic_mass": 29197.0 }, "refseq": {}, "gene_names": [ { "name": "C7orf78", "type": "recommended", "evidence": [ { "id": "A0A5G2QFH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6" } ] } ], "protein_names": [ { "name": "Chromosome 7 open reading frame 78", "type": "synonym", "evidence": [ { "id": "A0A5G2QFH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C7orf78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6", "locus": { "chromosome": "9", "start_pos": 82079903, "end_pos": 82065025, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049585", "url": "https://www.ensembl.org/id/ENSSSCG00000049585" } ] } } ], "crossref": [ { "id": "A0A5G2QFH6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049585", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049585", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QFH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIPTYENVLESQKGRGAMDIAKRLQCSPQNLNSEWKKNVLQPPKSEIKVKTWEIKPPDFSYKLYKSLRLPEKPLRTIKEEERKKKSNFPGTVLHLPGIRSHPQKAISPKFITTFPHLDSHKAKLMFVENGKYPNGVYIDPKPHDFRQYQRNLPNFVTAYEKDPFGLKFKSQHLSTVHGCPLLKDGQQKNSAERFITYKPHGCTWDSKLILPKAPWPVKSASYTRHRRRRDAYSAFMDRVEETFTKTCKNQ", "length": 250, "header": "tr|A0A5G2QFH6-1|A0A5G2QFH6_PIG Isoform 1 of Chromosome 7 open reading frame 78 OS=Sus scrofa OX=9823 GN=C7orf78 PE=4 SV=1 CANONICAL=A0A5G2QFH6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6/entry", "sequence": { "sequence": "MIPTYENVLESQKGRGAMDIAKRLQCSPQNLNSEWKKNVLQPPKSEIKVKTWEIKPPDFSYKLYKSLRLPEKPLRTIKEEERKKKSNFPGTVLHLPGIRSHPQKAISPKFITTFPHLDSHKAKLMFVENGKYPNGVYIDPKPHDFRQYQRNLPNFVTAYEKDPFGLKFKSQHLSTVHGCPLLKDGQQKNSAERFITYKPHGCTWDSKLILPKAPWPVKSASYTRHRRRRDAYSAFMDRVEETFTKTCKNQ", "length": 250, "header": "tr|A0A5G2QFH6-1|A0A5G2QFH6_PIG Isoform 1 of Chromosome 7 open reading frame 78 OS=Sus scrofa OX=9823 GN=C7orf78 PE=4 SV=1 CANONICAL=A0A5G2QFH6-1" }, "locus": { "chromosome": "9", "start_pos": 82076567, "end_pos": 82065139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070663.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070663.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062961.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062961.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFH6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFK2-1", "uniprot_ac": "A0A5G2QFK2", "uniprot_id": "A0A5G2QFK2_PIG", "mass": { "chemical_mass": 32883.0, "monoisotopic_mass": 32883.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050591", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050591", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QFK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKYYLNFGSDTEKRNTFSSRAVQNSCQTKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDTQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPRLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQSKCPSTDDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKGKYHMISLITGI", "length": 276, "header": "tr|A0A5G2QFK2-1|A0A5G2QFK2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFK2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2/entry", "sequence": { "sequence": "MKYYLNFGSDTEKRNTFSSRAVQNSCQTKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDTQMASKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPRLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQSKCPSTDDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKGKYHMISLITGI", "length": 276, "header": "tr|A0A5G2QFK2-1|A0A5G2QFK2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFK2-1" }, "locus": { "chromosome": "2", "start_pos": 74732689, "end_pos": 74731862, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071615.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071615.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060803.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060803.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 276, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFK2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFK7-1", "uniprot_ac": "A0A5G2QFK7", "uniprot_id": "A0A5G2QFK7_PIG", "mass": { "chemical_mass": 54042.0, "monoisotopic_mass": 54042.0 }, "refseq": {}, "gene_names": [ { "name": "AMZ1", "type": "recommended", "evidence": [ { "id": "A0A5G2QFK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ] } ], "protein_names": [ { "name": "Archaelysin family metallopeptidase 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QFK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Probable zinc metalloprotease.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7#function" }, { "database": "UniProtKB", "id": "ARBA00024316", "url": "https://www.uniprot.org/uniprotkb/ARBA00024316#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AMZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7", "locus": { "chromosome": "3", "start_pos": 1994169, "end_pos": 1963896, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007564", "url": "https://www.ensembl.org/id/ENSSSCG00000007564" } ] } } ], "crossref": [ { "id": "A0A5G2QFK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007564", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007564", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11375", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11375", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR012962", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012962", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LAKWEMF", "url": "https://omabrowser.org/oma/group/LAKWEMF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32205", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32205", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32205:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32205:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A288CFX0", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQCRPAQEFSFGPRALKDALVSTDPGLRQLYAAAFSPAERLFLAEAYNPRRTLFGAPRIHTAFDWLLSRPEAPEDFETFHAALPPRKQSPARKHIYLQPIDLSEGLAGGALLYHLRSCTEAFFLGLQVRCLPSVAAASIHCSSRLSQDSDRLQLHTDGILSFLKSSKPGDACVLGLTLSDLYPCEAWTFTFGKFLPGHEVGVCSFARFSEEFLQLGPSAPDVALAEVAADGPEVPLQDTGQTVCFSALGMLQCCKVTCHELCHLLGLGSCRWLRCLMQGALSLDEALRRPLDLCPICLRKLQHILGFRLVDRYKRLYLWTQAVAGTQTGEEAAGEPSASVSEDTLPCSADSGLCCESDSEPGTSLSEPLSPDAWSHAFPAGAELEPEDGLGALAAAEGPGEALAEHGRWLAACIQALERAVTEEELARVDSAVDALARWEMFTGQLPAPRHDLPCGQDSAGLRRILGGTFSSLRRRLSARRLARAEVSPRRGKAEEN", "length": 498, "header": "tr|A0A5G2QFK7-1|A0A5G2QFK7_PIG Isoform 1 of Archaelysin family metallopeptidase 1 OS=Sus scrofa OX=9823 GN=AMZ1 PE=3 SV=1 CANONICAL=A0A5G2QFK7-1" }, "isoforms": [ { "isoform_ac": "A0A288CFX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX0/entry", "sequence": { "sequence": "MLQCRPAQEFSFGPRALKDALVSTDPGLRQLYAAAFSPAERLFLAEAYNPRRTLFGAPRIHTAFDWLLSRPEAPEDFETFHAALPPRKQSPARKHIYLQPIDLSEGLAGGALLYHLRSCTEAFFLGLQVRCLPSVAAASIHCSSRLSQDSDRLQLHTDGILSFLKSSKPGDACVLGLTLSDLYPCEAWTFTFGKFLPGHGHVPRALPPPGPGELPLAPLPHAGGPEPGRGPAAAPGPLPHLPAEAAAHPGLQAGRQVQETVPLDPSGGGDADRRGGGGGAVCVRVGGHPAVQRGLGPVL", "length": 299, "header": "tr|A0A288CFX0-1|A0A288CFX0_PIG Computationally mapped isoform of Archaelysin family metallopeptidase 1 OS=Sus scrofa OX=9823 GN=AMZ1 PE=4 SV=2 CANONICAL=A0A5G2QFK7-1" }, "locus": { "chromosome": "3", "start_pos": 1992738, "end_pos": 1964095, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008296.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008296.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008077.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008077.4" } ] } }, { "isoform_ac": "A0A5G2QFK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7/entry", "sequence": { "sequence": "MLQCRPAQEFSFGPRALKDALVSTDPGLRQLYAAAFSPAERLFLAEAYNPRRTLFGAPRIHTAFDWLLSRPEAPEDFETFHAALPPRKQSPARKHIYLQPIDLSEGLAGGALLYHLRSCTEAFFLGLQVRCLPSVAAASIHCSSRLSQDSDRLQLHTDGILSFLKSSKPGDACVLGLTLSDLYPCEAWTFTFGKFLPGHEVGVCSFARFSEEFLQLGPSAPDVALAEVAADGPEVPLQDTGQTVCFSALGMLQCCKVTCHELCHLLGLGSCRWLRCLMQGALSLDEALRRPLDLCPICLRKLQHILGFRLVDRYKRLYLWTQAVAGTQTGEEAAGEPSASVSEDTLPCSADSGLCCESDSEPGTSLSEPLSPDAWSHAFPAGAELEPEDGLGALAAAEGPGEALAEHGRWLAACIQALERAVTEEELARVDSAVDALARWEMFTGQLPAPRHDLPCGQDSAGLRRILGGTFSSLRRRLSARRLARAEVSPRRGKAEEN", "length": 498, "header": "tr|A0A5G2QFK7-1|A0A5G2QFK7_PIG Isoform 1 of Archaelysin family metallopeptidase 1 OS=Sus scrofa OX=9823 GN=AMZ1 PE=3 SV=1 CANONICAL=A0A5G2QFK7-1" }, "locus": { "chromosome": "3", "start_pos": 1993165, "end_pos": 1964095, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106307.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106307.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077000.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LYL6-1", "protein_name": "Archaemetzincin-1", "gene_name": "Amz1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLQCRPPQEFSFGPRALKDALISRDLALKQLYTSAFSPSERLFLSEAYNPHRTLFSTLLIHSAFDWLLSRPEAPEDFETFHASLQPRKQSLARKHIYLQPIDLSEGLAGCPLLDHLRNCAEAFFLGLRVKCLPSVAAASIHCSSRPSQDTDGLQLHTDGILSFLKNNKPGDALCVLGLTLADLYPHDAWTFTFGRFLPGHEVGVCSFARFSGEFLQAGPSLPDPALLEAAADDPETLPHEGGRTLCFSALGMVQCCKVTCHELCHLLGLGSCRWLRCLLQGALSLDEAIRRPLDLCPICLRKLQHLLGFRLLERYKRLHTWTRVMVEMWSGQEAGEPSVSDDTLPFSADSGMGCESDTEPVTSPSEPVTPDAWSHVFPDGPEPGSEDGLSSLVASEVLLKLGGPIEAIEEYGQWLGACIQVLEREVAEEELVHVDAAVDAMGRWEMFTGQLPVTRQHLPCVKDNVGLRRVLGDKFFSLRRRLSSRRLAKASSSHCRWGAEN", "length": 501 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZCN5-1", "protein_name": "Archaelysin family metallopeptidase 2", "gene_name": "AMZ2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLQCKHTQEFSFGPRALKDALISTNPALQELYAKAFSRAEKLFLSEAYNPQRTLFCTLLIRTAFDWLLSHPDAPEDFETFYHAMLRRKQSFCRKHIYLQPIDLTEGPAGPSLLDSLQSCVESFFLGLRVKCLPSIPISSIHCCYRHSRDSDRVQLHADGILNFLKNNKPMDALCVLGLTLTDLYPCETWSFTFSKFLPGQEVGVCSFARFSGDFPQASCSSLNPLTHREQLSDVSKESRERTLPFSAQEMVQCCKVTCHEICHLMGLGTCRWLQCIMQGALSLDEALLRPLEPCPICLRKLQHIVGFKLVERYRKLYAWTQTVLSTWPKQEPADLSASEDVLPLSSDSGMCCENDSEAVTSLSEPLTPDVCSQALSIGPELEQDERSCSLAEVQSQPQPAGPSQPTDVIKDYELWLEMCIAALERNVSEEELARVDKAVDALARWDMFTGQLPAMKKDLPFVRDNTGLRKVLGDKFSSLRRKLSSRKLSKGESSPHRWRWEDN", "length": 503 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B9T4-1", "protein_name": "Archaelysin family metallopeptidase 1", "gene_name": "AMZ1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLQCRPAEEFSFGPRALKDALLSTDPALRQLYTAAFSPAERLFLAEAYNPRRTLFGTLLIRTAFDWLLSRPEAPEDFQTFHAALPPRKQSLARKHIYLQPIGLSEGPAGSVLLDQLRSCTEAFFLGLQVRCLPSVAAASIHCSSRPGQDPDRLQLHTDGILSFLKSSKPGDALCVLGLTLSDLYPCEAWTFTFGTFLPGHEVGVCSFARFSGEFLPRGPSTPDLVEVEAEAAADGPEVPLQDGGQAVCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALRVDEALRRPLDLCPICLRKLQHLLGFRLVDRYKRLYAWTQAAAGTQPSPAAVGEPSVSEDTLPCSADSGLCCESDSEPGSSLSEPLSPDAWIPAGLELDAEDGLGSLAAAEGPGEALAEHGRWLAACIQALERDVSEGELERVDGAVDALAPWDLFTGRLPASRQDLPCGRDGAGLRRVLGDTFSSLRRRLSARRPSRAESPLRRQKAEDD", "length": 496 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q400C9-1", "protein_name": "Archaemetzincin-1", "gene_name": "Amz1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVQCRPPQEFSFGPRALKDALISCDLALKQLYTSAFSPSERLFLSEAYNPHRTLFSTLLIHSAFDWLLSRPEAPEDFETFHASLQLRKQSLARKHIYLQPIDLSEGLAGCPLLDHLRSCAEAFFLGLRVKCLPSVASASINCCSRPARDTDGLQLHTDGILSFLKNNKPGDALCVLGLTLADLYPHDAWTFTFGRFLPGHEVGVCSFARFSGEFLQAGSSIPDSALLEAAAGGPETLPQEGGQTLCYSALGMVQCCKVTCHELCHLLGLGSCRWLRCLLQGVLSLDEALRRPLDLCPICLRKLHHLLGFRLLERYKRLHTWTRVMLEMWSGQEAGEPSVSEDTLPFSADSGMGCESDTEPVTSPSEPVTPDAWSHTFPDGPEPVSEEGLSSLAASEVLLKLGGPVDALEEYRQWLDACIQALEREVAEEELVQVDAAVDALGRWEMFTGQLPVTKQYMPCVKDNVGLRRVLGDKFSSLRRRLSSRRLAKASSSQCHWGAEN", "length": 501 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q400G9-1", "protein_name": "Archaemetzincin-1", "gene_name": "AMZ1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLQCRPAQEFSFGPRALKDALVSTDAALQQLYVSAFSPAERLFLAEAYNPQRTLFCTLLIRTGFDWLLSRPEAPEDFQTFHASLQHRKPRLARKHIYLQPIDLSEEPVGSSLLHQLCSCTEAFFLGLRVKCLPSVAAASIRCSSRPSRDSDRLQLHTDGILSFLKNNKPGDALCVLGLTLSDLYPHEAWSFTFSKFLPGHEVGVCSFARFSGEFPKSGPSAPDLALVEAAADGPEAPLQDRGWALCFSALGMVQCCKVTCHELCHLLGLGNCRWLRCLMQGALSLDEALRRPLDLCPICLRKLQHVLGFRLIERYQRLYTWTQAVVGTWPSQEAGEPSVWEDTPPASADSGMCCESDSEPGTSVSEPLTPDAGSHTFASGPEEGLSYLAASEAPLPPGGPAEAIKEHERWLAMCIQALQREVAEEDLVQVDRAVDALDRWEMFTGQLPATRQDPPSSRDSVGLRKVLGDKFSSLRRKLSARKLARAESAPRPWDGEES", "length": 498 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BVF9-1", "protein_name": "Archaemetzincin-1", "gene_name": "Amz1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVQCKPPQEFSFGPRALKDALISCDLALKQMYTSAFSPSERLFLSEAYNPNRTLFSTLLIHSAYDWLLSRPEAPEDFETFHASLQLRKQSLARKHIYLQPIDLSEGLAGCPLLDHLRSCAEAFFLGLRVKCLPSVAAASINCCSRPSRDTDGLQLHTDGILSFLKNNKPGDALCVLGLTLADLYPHDAWTFTFGRFLPGHEVGVCSFARFSGEFLQAGSSVPDSALLEAAAAGGPETLPRERGRTLCFSALGMVQCCKVTCHELCHLLGLGSCRWLRCLLQGALSLDEVLRRPLDLCPICLRKLHHLLGFRLLERYKRLHAWTRVMVEIWSGQEAGEPSVSEDTLPFSADSGMGCESDTEPVTSPSEPVTPDGWSHPFPDGPEPVSEDGLGSLMASEVSLTLGGPVDAMEEYGQWLTACIQTLEREGAEEELLQVDAAVDALSRWEMFTGQLPVTKQHVPCGKDNVGLRRVLGDKFSSLRRRLSSRRFAKASSSHCRWGAEN", "length": 502 }, "evidence": [ { "id": "A0A5G2QFK7", "url": "https://omabrowser.org/oma/group/A0A5G2QFK7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metallopeptidase activity", "id": "GO:0008237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008237", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 498, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFP6-1", "uniprot_ac": "A0A5G2QFP6", "uniprot_id": "A0A5G2QFP6_PIG", "mass": { "chemical_mass": 123335.0, "monoisotopic_mass": 123335.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QFP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QFP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047971", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047971", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKSKEKKPTAWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPIANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPRTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNICSGQSPKAIETRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKRVSNDATDKGLISRIYKQLIQLN", "length": 1060, "header": "tr|A0A5G2QFP6-1|A0A5G2QFP6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QFP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKSKEKKPTAWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPIANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPRTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNICSGQSPKAIETRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKRVSNDATDKGLISRIYKQLIQLN", "length": 1060, "header": "tr|A0A5G2QFP6-1|A0A5G2QFP6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QFP6-1" }, "locus": { "chromosome": "1", "start_pos": 100967576, "end_pos": 100964397, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069683.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069683.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063051.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063051.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1060, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFP6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP6" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFS2-1", "uniprot_ac": "A0A5G2QFS2", "uniprot_id": "A0A5G2QFS2_PIG", "mass": { "chemical_mass": 10265.0, "monoisotopic_mass": 10265.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFS2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051098", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051098", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QFS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFDRWASKLIPYDLAIPLLDIYLDETFIQKDTCSPMFTVALFTIVKIWKQPKCPWTDEWTKKMWYINTTEYYSAIKKDKIMPCAAT", "length": 86, "header": "tr|A0A5G2QFS2-1|A0A5G2QFS2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFS2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2/entry", "sequence": { "sequence": "MFDRWASKLIPYDLAIPLLDIYLDETFIQKDTCSPMFTVALFTIVKIWKQPKCPWTDEWTKKMWYINTTEYYSAIKKDKIMPCAAT", "length": 86, "header": "tr|A0A5G2QFS2-1|A0A5G2QFS2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFS2-1" }, "locus": { "chromosome": "11", "start_pos": 66527632, "end_pos": 66527375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090116.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090116.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063077.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063077.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 86, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFS2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFT4-1", "uniprot_ac": "A0A5G2QFT4", "uniprot_id": "A0A5G2QFT4_PIG", "mass": { "chemical_mass": 17470.0, "monoisotopic_mass": 17470.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QFT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFT4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QFT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMWVHVSFLRQVLSGYMPKSGIAGSYGSSMCSFLRYLHTVLHSDCCSLHSHYQCRRVPFSLHAVQQLLFVDLLMMAILTCVRWYLMVVLICISLIISGVEHFFMCLLPICISSLEKCLFRSYSDFLNPSERRSTEWKSRGRLGKTSLCLW", "length": 151, "header": "tr|A0A5G2QFT4-1|A0A5G2QFT4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFT4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4/entry", "sequence": { "sequence": "MNMWVHVSFLRQVLSGYMPKSGIAGSYGSSMCSFLRYLHTVLHSDCCSLHSHYQCRRVPFSLHAVQQLLFVDLLMMAILTCVRWYLMVVLICISLIISGVEHFFMCLLPICISSLEKCLFRSYSDFLNPSERRSTEWKSRGRLGKTSLCLW", "length": 151, "header": "tr|A0A5G2QFT4-1|A0A5G2QFT4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFT4-1" }, "locus": { "chromosome": "1", "start_pos": 22331937, "end_pos": 22331394, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087091.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087091.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062630.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062630.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 151, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFT4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFV4-1", "uniprot_ac": "A0A5G2QFV4", "uniprot_id": "A0A5G2QFV4_PIG", "mass": { "chemical_mass": 33319.0, "monoisotopic_mass": 33319.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Zinc finger protein 212", "type": "synonym", "evidence": [ { "id": "A0A5G2QFV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFV4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016773", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016773", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFV4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQFVSTRPQPQQLGIQGLGLDSGSWSWAQALPPEEVCHQEPALRGEMAEGMPPVQAQEWDMDARRPMPFQFPPFPDRAPVFPDRMMREPQLPTAEISLWTVVAAIQAVERKVEAQASQLLNLEGRTGTAEKKLADCEKTALEFGNQLEGKWAVLGTLLQEYGLLQRRLENMENLLRNRNFWVLRLPPGSRGEAPKVPVTFVDIAVYFSEDEWKNLDEWQKELYHNLVKENYKTLMGPLNLPGLNGQPSYSHGVDQGVGRVASRREGARRTVRRAPPCGHSPAEHRACPVGLCRHR", "length": 295, "header": "tr|A0A5G2QFV4-1|A0A5G2QFV4_PIG Isoform 1 of Zinc finger protein 212 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFV4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4/entry", "sequence": { "sequence": "MQFVSTRPQPQQLGIQGLGLDSGSWSWAQALPPEEVCHQEPALRGEMAEGMPPVQAQEWDMDARRPMPFQFPPFPDRAPVFPDRMMREPQLPTAEISLWTVVAAIQAVERKVEAQASQLLNLEGRTGTAEKKLADCEKTALEFGNQLEGKWAVLGTLLQEYGLLQRRLENMENLLRNRNFWVLRLPPGSRGEAPKVPVTFVDIAVYFSEDEWKNLDEWQKELYHNLVKENYKTLMGPLNLPGLNGQPSYSHGVDQGVGRVASRREGARRTVRRAPPCGHSPAEHRACPVGLCRHR", "length": 295, "header": "tr|A0A5G2QFV4-1|A0A5G2QFV4_PIG Isoform 1 of Zinc finger protein 212 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFV4-1" }, "locus": { "chromosome": "18", "start_pos": 55519287, "end_pos": 55495258, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089609.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089609.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063617.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFV4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 295, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFV4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFV4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV4" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 272, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFV9-1", "uniprot_ac": "A0A5G2QFV9", "uniprot_id": "A0A5G2QFV9_PIG", "mass": { "chemical_mass": 6845.0, "monoisotopic_mass": 6845.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "KRAB domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QFV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFV9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFV9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043541", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043541", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "FQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGDVHLCWILDSSYK", "length": 58, "header": "tr|A0A5G2QFV9-1|A0A5G2QFV9_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFV9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9/entry", "sequence": { "sequence": "FQGLLTVKDVAIDFSPEEWECLDLGQRDLYRDVMIEIYRHLVSLGDVHLCWILDSSYK", "length": 58, "header": "tr|A0A5G2QFV9-1|A0A5G2QFV9_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFV9-1" }, "locus": { "chromosome": "8", "start_pos": 42652262, "end_pos": 42651140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076359.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076359.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063622.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063622.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFV9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 58, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFV9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFV9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFV9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 58, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFW4-1", "uniprot_ac": "A0A5G2QFW4", "uniprot_id": "A0A5G2QFW4_PIG", "mass": { "chemical_mass": 86442.0, "monoisotopic_mass": 86442.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVCYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QFW4-1|A0A5G2QFW4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFW4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4/entry", "sequence": { "sequence": "MNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVCYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QFW4-1|A0A5G2QFW4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QFW4-1" }, "locus": { "chromosome": "1", "start_pos": 125682872, "end_pos": 125680659, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083535.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083535.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062666.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062666.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFW4" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 238, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 531, "end_pos": 533 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFY3-1", "uniprot_ac": "A0A5G2QFY3", "uniprot_id": "A0A5G2QFY3_PIG", "mass": { "chemical_mass": 83182.0, "monoisotopic_mass": 83182.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100521779", "type": "recommended", "evidence": [ { "id": "A0A5G2QFY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ] } ], "protein_names": [ { "name": "Cadherin domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QFY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100521779", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QFY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036516", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036516", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFCQFLLQVVFIVMAFLSQAHPAPIRYSVLEESESGSFIAHLTKDLGLGIGELADRSARIVSDDDKQRLQLDHQTGDLLWREKPDREELCGPTEPCILPFQVFLEAPVQFVEGELLIQDINDHSPVFPDREMLLKIPENSQPGAVFPLQFAQDLDVGSNGLQNYTISPNSHFHVVTRTRSEGKKYPDLVQDKALDREEQPELSLTLTALDGGSPPRSGTSMVRILVMDVNDNAPEFVTSPYEVQVLENSPLDSPILTVLARDRDAGNFGKVSYGFFQASDEIKQTFSINEVTGEIRLTKKLDFEQMKSYHLEIEATDGGGLSGKGAVVIEVVDVNDNAPELTISSLTSSVPENSPETVVAVFRIRDRDSGDNGKMICSIPDNLPFVLKPTFKNYYTLVTESPLDREERAEYNITISHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEALRAFDFQVRAADRGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVLLAPGRAPGAGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRRGGAASAGGCAGPAEGGVPGQLLDVGGTGTLAHGYRYEVCLTGDRRTGEFQFLKPVFPNLLLQDPEGEIKNSPNFRNSLVLN", "length": 771, "header": "tr|A0A5G2QFY3-1|A0A5G2QFY3_PIG Isoform 1 of Cadherin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100521779 PE=4 SV=1 CANONICAL=A0A5G2QFY3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3/entry", "sequence": { "sequence": "MFCQFLLQVVFIVMAFLSQAHPAPIRYSVLEESESGSFIAHLTKDLGLGIGELADRSARIVSDDDKQRLQLDHQTGDLLWREKPDREELCGPTEPCILPFQVFLEAPVQFVEGELLIQDINDHSPVFPDREMLLKIPENSQPGAVFPLQFAQDLDVGSNGLQNYTISPNSHFHVVTRTRSEGKKYPDLVQDKALDREEQPELSLTLTALDGGSPPRSGTSMVRILVMDVNDNAPEFVTSPYEVQVLENSPLDSPILTVLARDRDAGNFGKVSYGFFQASDEIKQTFSINEVTGEIRLTKKLDFEQMKSYHLEIEATDGGGLSGKGAVVIEVVDVNDNAPELTISSLTSSVPENSPETVVAVFRIRDRDSGDNGKMICSIPDNLPFVLKPTFKNYYTLVTESPLDREERAEYNITISHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEALRAFDFQVRAADRGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVLLAPGRAPGAGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRRGGAASAGGCAGPAEGGVPGQLLDVGGTGTLAHGYRYEVCLTGDRRTGEFQFLKPVFPNLLLQDPEGEIKNSPNFRNSLVLN", "length": 771, "header": "tr|A0A5G2QFY3-1|A0A5G2QFY3_PIG Isoform 1 of Cadherin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100521779 PE=4 SV=1 CANONICAL=A0A5G2QFY3-1" }, "locus": { "chromosome": "2", "start_pos": 142845882, "end_pos": 142842739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085907.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085907.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063647.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063647.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "pmid": "" }, { "name": "cell adhesion molecule binding", "id": "GO:0050839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050839", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 771, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFY3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QFY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFY3" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 236, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 93 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 418, "end_pos": 420 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 549, "end_pos": 551 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QG11-1", "uniprot_ac": "A0A5G2QG11", "uniprot_id": "A0A5G2QG11_PIG", "mass": { "chemical_mass": 6530.0, "monoisotopic_mass": 6530.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QG11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11", "locus": {} } ], "crossref": [ { "id": "A0A5G2QG11", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG11", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048201", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048201", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QG11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLTRGPALPTGPPDPQGDVGSRRPAPPWGGNEAAGAETSGTAPLLAAGAGTEEAERRHRDEGQ", "length": 64, "header": "tr|A0A5G2QG11-1|A0A5G2QG11_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QG11-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11/entry", "sequence": { "sequence": "MWLTRGPALPTGPPDPQGDVGSRRPAPPWGGNEAAGAETSGTAPLLAAGAGTEEAERRHRDEGQ", "length": 64, "header": "tr|A0A5G2QG11-1|A0A5G2QG11_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QG11-1" }, "locus": { "chromosome": "12", "start_pos": 4526344, "end_pos": 4525666, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078278.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078278.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063183.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063183.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QG11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 64, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QG11-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG11" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QG31-1", "uniprot_ac": "A0A5G2QG31", "uniprot_id": "A0A5G2QG31_PIG", "mass": { "chemical_mass": 25516.0, "monoisotopic_mass": 25516.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QG31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31", "locus": {} } ], "crossref": [ { "id": "A0A5G2QG31", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG31", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16594", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16594", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQAASLAQLQAEASCPICLDYLQDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLQHCPDRSLRRNTQLCHMVDVVKQLPNMEGEGKQQEEKALCLKHHQVLSLFCEEDLELLCPQCKISSHHGGHLVVPMEPAAACHRRRLKGSIEPLKEQHEVAKKALEMQVSKTFDLMREVQKTPSLGLGRGVLTQEDSSCGGNLPNHQTPQGGFAFLSQVILGPLTARLHKMPQ", "length": 230, "header": "tr|A0A5G2QG31-1|A0A5G2QG31_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QG31-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31/entry", "sequence": { "sequence": "MAQAASLAQLQAEASCPICLDYLQDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLQHCPDRSLRRNTQLCHMVDVVKQLPNMEGEGKQQEEKALCLKHHQVLSLFCEEDLELLCPQCKISSHHGGHLVVPMEPAAACHRRRLKGSIEPLKEQHEVAKKALEMQVSKTFDLMREVQKTPSLGLGRGVLTQEDSSCGGNLPNHQTPQGGFAFLSQVILGPLTARLHKMPQ", "length": 230, "header": "tr|A0A5G2QG31-1|A0A5G2QG31_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QG31-1" }, "locus": { "chromosome": "8", "start_pos": 44163759, "end_pos": 44162047, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070360.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070360.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063702.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063702.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QG31-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 230, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QG31-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG31" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QG31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 133, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QG31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG31" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 56, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QG43-1", "uniprot_ac": "A0A5G2QG43", "uniprot_id": "A0A5G2QG43_PIG", "mass": { "chemical_mass": 4976.0, "monoisotopic_mass": 4976.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Slingshot protein phosphatase 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QG43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43", "locus": {} } ], "crossref": [ { "id": "A0A5G2QG43", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047097", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047097", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QG43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALVTVQRSPTPSTTSSPCASKAELGSLDREVQGGRFPVIVRRNFQ", "length": 46, "header": "tr|A0A5G2QG43-1|A0A5G2QG43_PIG Isoform 1 of Slingshot protein phosphatase 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QG43-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43/entry", "sequence": { "sequence": "MALVTVQRSPTPSTTSSPCASKAELGSLDREVQGGRFPVIVRRNFQ", "length": 46, "header": "tr|A0A5G2QG43-1|A0A5G2QG43_PIG Isoform 1 of Slingshot protein phosphatase 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QG43-1" }, "locus": { "chromosome": "12", "start_pos": 46085616, "end_pos": 46084114, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077544.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077544.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062751.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062751.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 11, "start_aa": "Thr", "end_pos": 11, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr11", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QG43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 46, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QG43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG43" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 11 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QG80-1", "uniprot_ac": "A0A5G2QG80", "uniprot_id": "A0A5G2QG80_PIG", "mass": { "chemical_mass": 76917.0, "monoisotopic_mass": 76917.0 }, "refseq": { "ac": "XP_020949535", "name": "U3 small nucleolar RNA-associated protein 4 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949535" }, "gene_names": [ { "name": "UTP4", "type": "recommended", "evidence": [ { "id": "A0A5G2QG80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ] }, { "name": "UTP4", "type": "synonym", "evidence": [ { "id": "XP_020949535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949535" } ] } ], "protein_names": [ { "name": "U3 small nucleolar RNA-associated protein 4 homolog", "type": "recommended", "evidence": [ { "id": "A0A5G2QG80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80/entry#names_and_taxonomy" } ] }, { "name": "Cirhin", "type": "synonym", "evidence": [ { "id": "A0A5G2QG80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80/entry#names_and_taxonomy" } ] }, { "name": "U3 small nucleolar RNA-associated protein 4 homolog", "type": "synonym", "evidence": [ { "id": "XP_020949535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949535" } ] } ], "function": [ { "annotation": "Ribosome biogenesis factor. Involved in nucleolar processing of pre-18S ribosomal RNA. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted d Involved in SSU pre-rRNA processing at sites A', A0, 1 and 2b. Required for optimal pre-ribosomal RNA transcription by RNA polymerase. May be a transcriptional regulator.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B1A2", "url": "https://www.uniprot.org/uniprotkb/A0A287B1A2#function" }, { "database": "UniProtKB", "id": "ARBA00057501", "url": "https://www.uniprot.org/uniprotkb/ARBA00057501#function" }, { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UTP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80", "locus": { "chromosome": "6", "start_pos": 17778556, "end_pos": 17818132, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028638", "url": "https://www.ensembl.org/id/ENSSSCG00000028638" } ] } } ], "crossref": [ { "id": "ENSSSCG00000028638", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028638", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "414432", "url": "https://www.ncbi.nlm.nih.gov/gene/414432", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046351", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046351", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:414432", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414432", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "STYITEW", "url": "https://omabrowser.org/oma/group/STYITEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QG80", "url": "https://www.orthodb.org/?gene=A0A5G2QG80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44163", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44163", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44163:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44163:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020949535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B1A2", "url": "https://www.uniprot.org/uniprotkb/A0A287B1A2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1A2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1A2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTVATGKHGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWVAYSTASRFFLYRLNYDHDSVSLQRVSKMPAFLRSALHILFSEDSSKLFVASSQGSLHIIRLLEGSFKHLHTFQPQSGTVESMCLLAVSPDGNWLAASGTSAGVHVYNVKHLKLHCTVPAYNFPVTALAIAPKTNNLVIAHSDQQVFEYSIPDKQYTEWSRTIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPLPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDEKTLVAVERPLDDIIAQLPPPIKKKKFGT", "length": 686, "header": "tr|A0A5G2QG80-1|A0A5G2QG80_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 4 homolog OS=Sus scrofa OX=9823 GN=UTP4 PE=4 SV=1 CANONICAL=A0A5G2QG80-1" }, "isoforms": [ { "isoform_ac": "A0A287B1A2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1A2/entry", "sequence": { "sequence": "MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTVATGKHGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWVAYSTASRFFLYRLNYDHDSVSLQRVSKMPAFLRSALHILFSEDSSKLFVASSQGSLHIIRLLEGSFKHLHTFQPQSGTVESMCLLAVSPDGNWLAASGTSAGVHVYNVKHLKLHCTVPAYNFPVTALAIAPKTNNLVIAHSDQQVFEYSIPDKQYTEWSRTIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLLFMDLLDEKTLVAVERPLDDIIAQLPPPIKKKKFGT", "length": 649, "header": "tr|A0A287B1A2-1|A0A287B1A2_PIG Computationally mapped isoform of U3 small nucleolar RNA-associated protein 4 homolog OS=Sus scrofa OX=9823 GN=UTP4 PE=4 SV=2 CANONICAL=A0A5G2QG80-1" }, "locus": { "chromosome": "6", "start_pos": 17816993, "end_pos": 17785002, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060848.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060848.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049940.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049940.2" } ] } }, { "isoform_ac": "A0A5G2QG80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80/entry", "sequence": { "sequence": "MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAKGQRLFSAGLNGEIIEYDLQALNVKYAVDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAIHKMLVDRQYMGVSKRKCIIWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKNHLIANADVQSIAISDQEDSFVVGTAEGTVFHFQLVSVTSSSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLVFCAKKKQLLLFQFAHHLELWRLGSTVATGKHGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWVAYSTASRFFLYRLNYDHDSVSLQRVSKMPAFLRSALHILFSEDSSKLFVASSQGSLHIIRLLEGSFKHLHTFQPQSGTVESMCLLAVSPDGNWLAASGTSAGVHVYNVKHLKLHCTVPAYNFPVTALAIAPKTNNLVIAHSDQQVFEYSIPDKQYTEWSRTIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPLPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDEKTLVAVERPLDDIIAQLPPPIKKKKFGT", "length": 686, "header": "tr|A0A5G2QG80-1|A0A5G2QG80_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 4 homolog OS=Sus scrofa OX=9823 GN=UTP4 PE=4 SV=1 CANONICAL=A0A5G2QG80-1" }, "locus": { "chromosome": "6", "start_pos": 17816993, "end_pos": 17785002, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076949.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076949.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063268.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063268.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:414432", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414432", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "M9PFG1-1", "protein_name": "Lethal (3) 72Dn, isoform B", "gene_name": "l(3)72Dn", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTNNAKKEPQQRGKHQVHNVRFYTIKPREIVSLAYSKSSKCLALSRATPVIELWNLEHAPYLDRVIHLPTDSHVESIAWAGNRLFSVDLSGKLIEWDVIKLKQRYEHSPTGNALWSIDVNPAETDIAIGSEEGHINILSIENDEITYKSLFNKQKGRVLCIKFDKTGTKLVTGTEGFVRIWNVLKGTTLHTMTLSEKNVIVWSLQVLSDNTIIAGDSAGFVTVWDADNATQIDSTRVLDKNVFALAVNNKEDRLVCSGMQPPLIRIFSKTKIKREESTSERWIKFLQRDAHKHYVKSLLVIDDQIYSGGRDGILTITSSERMQAHLSQHAPFLKGSVASMAISKKLLLLRYPNSVHLWRLGSVAPQGEDKKKPWALPVGHTEEQLLELPPQKLLQLNVKEHNFIQSAAISSDANWICYSTLKELRISRLKSDPLQVERLVDDLPEELQPASHIIFTKQGDLVLLNPQNNHLSWFTLEEDLVTFKYTIDLSEKCKNTISHVVISSHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTTALSMHEDYPRVVVAYANGQLVEYDLVNRIFTCETNEYLIPETRRHCINGISLDPQNRNIFIVHTEGNLYVLERDQHLDPKELVSNSKSKKLSNGNRSSVDGGSKGLSLKTTLSRQVRLHLVHVSRLSPNELVNVSISTNNLLAPLPPPYQRKKFGAS", "length": 699 }, "evidence": [ { "id": "A0A5G2QG80", "url": "https://omabrowser.org/oma/group/A0A5G2QG80/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q06679-1", "protein_name": "U3 small nucleolar RNA-associated protein 4", "gene_name": "UTP4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSSLLSVLKEKSRSLKIRNKPVKMTSQERMIVHRCRFVDFTPATITSLAFSHKSNINKLTPSDLRLAIGRSNGNIEIWNPRNNWFQEMVIEGGKDRSIEGLCWSNVNGESLRLFSIGGSTVVTEWDLATGLPLRNYDCNSGVIWSISINDSQDKLSVGCDNGTVVLIDISGGPGVLEHDTILMRQEARVLTLAWKKDDFVIGGCSDGRIRIWSAQKNDENMGRLLHTMKVDKAKKESTLVWSVIYLPRTDQIASGDSTGSIKFWDFQFATLNQSFKAHDADVLCLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQKNNRWVNSSNRLLHGNDIRAICAYQSKGADFLVSGGVEKTLVINSLTSFSNGNYRKMPTVEPYSKNVLVNKEQRLVVSWSESTVKIWTMGTDSSTEQNYKLVCKLTLKDDQNISTCSLSPDGQVLVVGRPSTTKVFHLQPVGNKLKVTKLDNDLLLRTSTKLVKFIDNSKIVICSCEDDVFIVDLESEEDEKPQEVELLEVTSTKSSIKVPYINRINHLEVDQNIAVISRGCGVVDILDLKARISKPLARLNNFITAVHINTSRKSVVVITADNKIYEFNMNLNSEAENEDSESVLTQWSKNNTDNLPKEWKTLKENCVGIFSDIENSSRLWFWGATWISRIDFDVDFPINKRRKQKKRTHEGLTITDESNFMNDEEDDEDDDIDMEISENLNVLLNQGNKIKSTDVQRNEESSGHFFFTDKYKPLLFVDLISSNELAIIERNPLTFHSKQKAFIQPKLVF", "length": 776 }, "evidence": [ { "id": "A0A5G2QG80", "url": "https://omabrowser.org/oma/group/A0A5G2QG80/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8R2N2-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "Utp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRGTEALCWAGGQRLFSAGLNGEILEYDLQALNIKYTLDAFGGPIWSMTASPSGSQLLVGCEDGSVKLFEVTPEKIQFARNFDRQKSRILSLCWHPAGTHVAAGSLDYISVFDVKSGSIIRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHLVANADVQSIAVADQEDSFVVGTAEGTVFHFQLVSMTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMERVEVKNYDAALRKITFPHRRLISCSKRRQLLLFQFAHHLELWRLGSTSATGKNGDTLPLSKNADHLLHLKTKGPENIICSCVSPCGSWIAYSTASRFFLYRLKYERDNISLQRVSKLPSFLRSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAYNFPVTALAIAPNTNNLVIAHSDQQVFEFSIPEKQYTEWSRSLQKQGFHQLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNEKTVLYNPLPPKNESDVFLRRTTHGFKMSKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT", "length": 686 }, "evidence": [ { "id": "A0A5G2QG80", "url": "https://omabrowser.org/oma/group/A0A5G2QG80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8RXU6-1", "protein_name": "WD repeat-containing protein PCN", "gene_name": "PCN", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLEYRCSSVDWKPSPVVALANSSDDSQVAAAREDGSLEIWLVSPGAVGWHCQLTIHGDPNSRISSLAWCCSPSIGLPSGRLFSSSIDGSISEWDLFDLKQKIVLESIGISIWQMALAPISGFSSDVEGIKNGYLSEKSNDEEEIGSEEDGSDSDEFHEKSEEEIDRILAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGLGGLGSSSEICVWSLLSLRCSVLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLSGSTNGSQDLKPSSSQKWDYIGYVKAHTHDIRALTVAVPISREDPFPDDILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLISAGDDAKLFAYSIQEFTKFSPHDICPAPQRIPMQMVHNSMFNKTSLLLVQGISTLDILRLNISSDSSGRASTKSLVRVKSRDARKIICSAISNTGSHFAYSDQIGPSLFELKKNEFTKCPWSVSRRRLPELPFAHSMIFSSDCSRLIIAGHDRRIYTIDISSLELVYAFTPSREEHEGEAPTPKEPPITKLFTSSDGQWLAAINCFGDIYVFNLETQRQHWFISRLDGASVTAAGFHPWNNNALVISTSSNQVFAFDVEARQLGKWSLLNTYVLPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDEEYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRRLDEYQLEGKSNERKNFEILPSNHPVLFVGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT", "length": 815 }, "evidence": [ { "id": "A0A5G2QG80", "url": "https://omabrowser.org/oma/group/A0A5G2QG80/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT", "length": 686 }, "evidence": [ { "id": "A0A5G2QG80", "url": "https://omabrowser.org/oma/group/A0A5G2QG80/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "t-UTP complex", "id": "GO:0034455", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034455", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 26, "end_pos": 28 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 628, "end_pos": 630 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGC3-1", "uniprot_ac": "A0A5G2QGC3", "uniprot_id": "A0A5G2QGC3_PIG", "mass": { "chemical_mass": 18912.0, "monoisotopic_mass": 18912.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGC3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGC3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QGC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTWVRVSFSRKVFSGYMAKSGIFGSYGSCMYSFLRYLHSVFHSGCTNSHSHQQCRRVLFSPHPLRHLLHADLLMMAILTGVRWYLMVVLICISLIIRDVEHFFMCLLVMGISSLKKYLFRSFAHFSIGLLAFLLLSCIRCLYILEIKPLSVASFEIIFSHSLS", "length": 164, "header": "tr|A0A5G2QGC3-1|A0A5G2QGC3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGC3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3/entry", "sequence": { "sequence": "MNTWVRVSFSRKVFSGYMAKSGIFGSYGSCMYSFLRYLHSVFHSGCTNSHSHQQCRRVLFSPHPLRHLLHADLLMMAILTGVRWYLMVVLICISLIIRDVEHFFMCLLVMGISSLKKYLFRSFAHFSIGLLAFLLLSCIRCLYILEIKPLSVASFEIIFSHSLS", "length": 164, "header": "tr|A0A5G2QGC3-1|A0A5G2QGC3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGC3-1" }, "locus": { "chromosome": "15", "start_pos": 79003057, "end_pos": 79002566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079614.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079614.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063807.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGC3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 164, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGC3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGC3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGD1-1", "uniprot_ac": "A0A5G2QGD1", "uniprot_id": "A0A5G2QGD1_PIG", "mass": { "chemical_mass": 14606.0, "monoisotopic_mass": 14606.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGD1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGD1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043595", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043595", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QGD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMQVHVSLLSRVLSGYMPKSGIQYGSSMYTFLRYLQTVLHSDCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMLVLICISLIISDVENFLMCLLAICISSLEKCLFRSFAHFSID", "length": 127, "header": "tr|A0A5G2QGD1-1|A0A5G2QGD1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGD1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1/entry", "sequence": { "sequence": "MNMQVHVSLLSRVLSGYMPKSGIQYGSSMYTFLRYLQTVLHSDCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMLVLICISLIISDVENFLMCLLAICISSLEKCLFRSFAHFSID", "length": 127, "header": "tr|A0A5G2QGD1-1|A0A5G2QGD1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGD1-1" }, "locus": { "chromosome": "AEMK02000694.1", "start_pos": 34105, "end_pos": 32690, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083309.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083309.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063817.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063817.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGD1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGD1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 127, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGD1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGD1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGE0-1", "uniprot_ac": "A0A5G2QGE0", "uniprot_id": "A0A5G2QGE0_PIG", "mass": { "chemical_mass": 20702.0, "monoisotopic_mass": 20702.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QGE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSKYRFLRYLHTIFHSGCTNLHSHQQCRRVPFSPYPLQLLLFVNLLMMTILTGMRWYVMVVLICISIIIKDVEHCFKFLLAICISSLEKCLFRAFAHFSIGLLTFLLLSCISSLYISEIKPLSVASFETIFSQSVNCLFVFFLISFAVQILVSLIRSSWFSFALISIVLGD", "length": 182, "header": "tr|A0A5G2QGE0-1|A0A5G2QGE0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGE0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0/entry", "sequence": { "sequence": "MPKSGIAGSYGSSKYRFLRYLHTIFHSGCTNLHSHQQCRRVPFSPYPLQLLLFVNLLMMTILTGMRWYVMVVLICISIIIKDVEHCFKFLLAICISSLEKCLFRAFAHFSIGLLTFLLLSCISSLYISEIKPLSVASFETIFSQSVNCLFVFFLISFAVQILVSLIRSSWFSFALISIVLGD", "length": 182, "header": "tr|A0A5G2QGE0-1|A0A5G2QGE0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGE0-1" }, "locus": { "chromosome": "AEMK02000677.1", "start_pos": 956906, "end_pos": 956462, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081295.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081295.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061071.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061071.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGE1-1", "uniprot_ac": "A0A5G2QGE1", "uniprot_id": "A0A5G2QGE1_PIG", "mass": { "chemical_mass": 38651.0, "monoisotopic_mass": 38651.0 }, "refseq": { "ac": "XP_013839353", "name": "poly(rC)-binding protein 2 isoform X24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839353" }, "gene_names": [ { "name": "PCBP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ] }, { "name": "PCBP2", "type": "synonym", "evidence": [ { "id": "XP_013839353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839353" } ] } ], "protein_names": [ { "name": "Poly(rC) binding protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1/entry#names_and_taxonomy" } ] }, { "name": "poly(rC)-binding protein 2 isoform X24", "type": "synonym", "evidence": [ { "id": "XP_013839353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839353" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCBP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1", "locus": { "chromosome": "5", "start_pos": 18704978, "end_pos": 18673981, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000274", "url": "https://www.ensembl.org/id/ENSSSCG00000000274" } ] } } ], "crossref": [ { "id": "A0A5G2QGE1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000274", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000274", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22515", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22515", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22518", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22518", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22521", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22521", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397665", "url": "https://www.ncbi.nlm.nih.gov/gene/397665", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397665", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397665", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SIAKEPH", "url": "https://omabrowser.org/oma/group/SIAKEPH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480Q0J7", "url": "https://www.orthodb.org/?gene=A0A480Q0J7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QDP8", "url": "https://www.orthodb.org/?gene=A0A5G2QDP8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGE1", "url": "https://www.orthodb.org/?gene=A0A5G2QGE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QU32", "url": "https://www.orthodb.org/?gene=A0A5G2QU32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013839353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839353", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BHL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Q0J7", "url": "https://www.uniprot.org/uniprotkb/A0A480Q0J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Q0J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Q0J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R625", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R625", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R625-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R625-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFQ4", "url": "https://www.uniprot.org/uniprotkb/F1SFQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 366, "header": "tr|A0A5G2QGE1-1|A0A5G2QGE1_PIG Isoform 1 of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=1 CANONICAL=A0A5G2QGE1-1" }, "isoforms": [ { "isoform_ac": "A0A287BHL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL0/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKSGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 351, "header": "tr|A0A287BHL0-1|A0A287BHL0_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=2 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18698892, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043239.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043239.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056077.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056077.2" } ] } }, { "isoform_ac": "A0A480Q0J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Q0J7/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 353, "header": "tr|A0A480Q0J7-1|A0A480Q0J7_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=1 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18698892, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060034.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060034.1" } ] } }, { "isoform_ac": "A0A5G2QDP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP8/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLATAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGASATTTTTSAVPCVTNKLKSEKQRFSPY", "length": 467, "header": "tr|A0A5G2QDP8-1|A0A5G2QDP8_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=4 SV=1 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18695723, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070951.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070951.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061756.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061756.1" } ] } }, { "isoform_ac": "A0A5G2QGE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 366, "header": "tr|A0A5G2QGE1-1|A0A5G2QGE1_PIG Isoform 1 of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=1 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18698892, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084330.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084330.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062867.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062867.1" } ] } }, { "isoform_ac": "A0A5G2QU32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU32/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLATAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGASATTTTTSAVPCVTNKLKSEKQRFSPY", "length": 436, "header": "tr|A0A5G2QU32-1|A0A5G2QU32_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=1 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18695723, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085719.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085719.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065511.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065511.1" } ] } }, { "isoform_ac": "A0A5G2QVL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVL8/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRHRLVADHFRGHPGYCPCKGHLGALVTQLLGSAKIGDLHHIVVRD", "length": 399, "header": "tr|A0A5G2QVL8-1|A0A5G2QVL8_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=2 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18704687, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073313.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073313.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068915.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068915.2" } ] } }, { "isoform_ac": "A0A5G2R625-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R625/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKVCTSLGNWVIVTARGGSGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEVRGDLTKLHQLAMQQSHFPMTHGNTGFSGTDTSMFISIRSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLATAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGASATTTTTSAVPCVTNKLKSEKQRFSPY", "length": 452, "header": "tr|A0A5G2R625-1|A0A5G2R625_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=2 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18695723, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070049.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070049.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069585.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069585.2" } ] } }, { "isoform_ac": "A0A5G2REH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REH8/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSTPGT", "length": 355, "header": "tr|A0A5G2REH8-1|A0A5G2REH8_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=2 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18703373, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085185.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085185.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073036.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073036.2" } ] } }, { "isoform_ac": "F1SFQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ4/entry", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRRPREGCDFSRPGHLRSKACSLLKMRHLSWCDWEGVQGAVGFLGQAQLREGWGSGARGCVWLPEQLSFLQLQLQHKSIKFHVQVVGSFQFPLIVFPDVQSVSEMGKRVPRVSWLYLLP", "length": 459, "header": "tr|F1SFQ4-1|F1SFQ4_PIG Computationally mapped isoform of Poly(rC) binding protein 2 OS=Sus scrofa OX=9823 GN=PCBP2 PE=1 SV=4 CANONICAL=A0A5G2QGE1-1" }, "locus": { "chromosome": "5", "start_pos": 18702977, "end_pos": 18676628, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000294.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000294.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000289.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000289.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397665", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397665", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-72203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "resource": "Reactome", "description": "Processing of Capped Intron-Containing Pre-mRNA" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AP00-1", "protein_name": "Poly(rC) binding protein 2", "gene_name": "Pcbp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLATAGTSDAPSSLPNPLPTAPCVSSLLGMKPIPLLALNVVSAAKGTGASATTTTTSTVPCVTNKLKGEKQRFSPY", "length": 467 }, "evidence": [ { "id": "A0A5G2QGE1", "url": "https://omabrowser.org/oma/group/A0A5G2QGE1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 365 }, "evidence": [ { "id": "A0A5G2QGE1", "url": "https://omabrowser.org/oma/group/A0A5G2QGE1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q61990-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "Pcbp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS", "length": 362 }, "evidence": [ { "id": "A0A5G2QGE1", "url": "https://omabrowser.org/oma/group/A0A5G2QGE1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LZ82-1", "protein_name": "Protein BTR1", "gene_name": "BTR1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKVDSATERTTD", "length": 313 }, "evidence": [ { "id": "A0A5G2QGE1", "url": "https://omabrowser.org/oma/group/A0A5G2QGE1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "promoter-enhancer loop anchoring activity", "id": "GO:0140585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140585", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "lncRNA binding", "id": "GO:0106222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106222", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "IRES-dependent viral translational initiation", "id": "GO:0075522", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0075522", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "negative regulation of defense response to virus", "id": "GO:0050687", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050687", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "viral RNA genome replication", "id": "GO:0039694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039694", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "chromatin looping", "id": "GO:0140588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140588", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" }, { "name": "negative regulation of cGAS/STING signaling pathway", "id": "GO:0160049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160049", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGE1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 366, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGE1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE1" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 80, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 140, "end_pos": 142 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGE6-1", "uniprot_ac": "A0A5G2QGE6", "uniprot_id": "A0A5G2QGE6_PIG", "mass": { "chemical_mass": 17335.0, "monoisotopic_mass": 17335.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGE6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047246", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047246", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00103", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00103", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11949:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11949:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00605", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00605", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TPQERPPMAGAGGPLRLRDWLVAQIESGRYPGLRWEDAGKTLFRIPWKHDAALFRAWAIHKGKHLEGIDKEDPSTWKTRLRCALNKSADFCEVRERSQLDISNPYKVYRLVSDGAHGPGTIIPLEVAAEDGSLGKKDLTLPICKTGNDGFKLMGW", "length": 155, "header": "tr|A0A5G2QGE6-1|A0A5G2QGE6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGE6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6/entry", "sequence": { "sequence": "TPQERPPMAGAGGPLRLRDWLVAQIESGRYPGLRWEDAGKTLFRIPWKHDAALFRAWAIHKGKHLEGIDKEDPSTWKTRLRCALNKSADFCEVRERSQLDISNPYKVYRLVSDGAHGPGTIIPLEVAAEDGSLGKKDLTLPICKTGNDGFKLMGW", "length": 155, "header": "tr|A0A5G2QGE6-1|A0A5G2QGE6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGE6-1" }, "locus": { "chromosome": "17", "start_pos": 35538055, "end_pos": 35531027, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092946.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092946.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079681.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079681.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 155, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGE6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGG1-1", "uniprot_ac": "A0A5G2QGG1", "uniprot_id": "A0A5G2QGG1_PIG", "mass": { "chemical_mass": 20958.0, "monoisotopic_mass": 20958.0 }, "refseq": {}, "gene_names": [ { "name": "GKN2", "type": "recommended", "evidence": [ { "id": "A0A5G2QGG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ] } ], "protein_names": [ { "name": "Gastrokine-2", "type": "recommended", "evidence": [ { "id": "A0A5G2QGG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1/entry#names_and_taxonomy" } ] }, { "name": "Blottin", "type": "synonym", "evidence": [ { "id": "A0A5G2QGG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GKN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1", "locus": { "chromosome": "3", "start_pos": 73451789, "end_pos": 73443856, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038802", "url": "https://www.ensembl.org/id/ENSSSCG00000038802" } ] } } ], "crossref": [ { "id": "A0A5G2QGG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038802", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038802", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16483", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16483", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BJQ9", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYILSELFVVFLVALTIFGTQSHGNEVYNIISSTANGGQIQETMTIDNEKNTATVNIQAGSCSSTTIFDYKHGYIASRVLSRRACYILKMDHKAIPALDELKRYTFEKQTLKNMFSDKYIWVKYNPLRSLITNVNWFLFGSPIRQLCENVPLYKGEVVDKTNDASAGACAKVGLLGILGISVCADLHV", "length": 188, "header": "tr|A0A5G2QGG1-1|A0A5G2QGG1_PIG Isoform 1 of Gastrokine-2 OS=Sus scrofa OX=9823 GN=GKN2 PE=4 SV=1 CANONICAL=A0A5G2QGG1-1" }, "isoforms": [ { "isoform_ac": "A0A287BJQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ9/entry", "sequence": { "sequence": "MKILVVFLVALTIFGTQSHGNEVYNIISSTANGGQIQETMTIDNEKNTATVNIQAGSCSSTTIFDYKHGYIASRVLSRRACYILKMDHKAIPALDELKRYTFEKQTLKNMFSDKYIWVKYNPLRSLITNVNWFLFGSPIRQLCENVPLYKGEVVDKTSEYQEIISLPNIF", "length": 170, "header": "tr|A0A287BJQ9-1|A0A287BJQ9_PIG Computationally mapped isoform of Gastrokine-2 OS=Sus scrofa OX=9823 GN=GKN2 PE=4 SV=2 CANONICAL=A0A5G2QGG1-1" }, "locus": { "chromosome": "3", "start_pos": 73450632, "end_pos": 73443862, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052231.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052231.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056311.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056311.2" } ] } }, { "isoform_ac": "A0A5G2QGG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1/entry", "sequence": { "sequence": "MYILSELFVVFLVALTIFGTQSHGNEVYNIISSTANGGQIQETMTIDNEKNTATVNIQAGSCSSTTIFDYKHGYIASRVLSRRACYILKMDHKAIPALDELKRYTFEKQTLKNMFSDKYIWVKYNPLRSLITNVNWFLFGSPIRQLCENVPLYKGEVVDKTNDASAGACAKVGLLGILGISVCADLHV", "length": 188, "header": "tr|A0A5G2QGG1-1|A0A5G2QGG1_PIG Isoform 1 of Gastrokine-2 OS=Sus scrofa OX=9823 GN=GKN2 PE=4 SV=1 CANONICAL=A0A5G2QGG1-1" }, "locus": { "chromosome": "3", "start_pos": 73451785, "end_pos": 73446011, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082843.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082843.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061086.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061086.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "pmid": "" }, { "name": "basal part of cell", "id": "GO:0045178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cell population proliferation", "id": "GO:0042127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042127", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGG1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 188, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGG1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGG1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG1" }, { "id": "PS50869", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50869" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRICHOS", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 155, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGG5-1", "uniprot_ac": "A0A5G2QGG5", "uniprot_id": "A0A5G2QGG5_PIG", "mass": { "chemical_mass": 36273.0, "monoisotopic_mass": 36273.0 }, "refseq": { "ac": "XP_013841662", "name": "fatty-acid amide hydrolase 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841662" }, "gene_names": [ { "name": "FAAH2", "type": "synonym", "evidence": [ { "id": "XP_013841662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841662" } ] } ], "protein_names": [ { "name": "Fatty acid amide hydrolase 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QGG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5/entry#names_and_taxonomy" } ] }, { "name": "fatty-acid amide hydrolase 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013841662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841662" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGG5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGG5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044675", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044675", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511300", "url": "https://www.ncbi.nlm.nih.gov/gene/100511300", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGG5", "url": "https://www.orthodb.org/?gene=A0A5G2QGG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013841662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841662", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCWGTTWNDCLEYTYWSCVAWTTWNKGDKTAVLQKGTAPPDCQTKACNPVNFTIFNSSEPKWKEGFKISIRIDGRGLDPGAVLHFQRITFALQAASHSIFHSFYEEIRNTPPPIPATTKNLFLALAETIVQTLKVSSCYVCRGTNTGDHWPWQARELDPLELHNETAYPQLTNGVWLLRTAIIGRNCLVRRVGWFNVSVKSLTCLGLRYYNLTAQKTQWWSSSNRSEPKPNPLSNFSHLRQAWEDISTNIQWRAPKGLYWICGKMAYSILPQNWAGACVLGTIRPSFFLLPLSLGEQLGVPIYRVQGAQRDRRALQIGN", "length": 319, "header": "tr|A0A5G2QGG5-1|A0A5G2QGG5_PIG Isoform 1 of Fatty acid amide hydrolase 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGG5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5/entry", "sequence": { "sequence": "MCWGTTWNDCLEYTYWSCVAWTTWNKGDKTAVLQKGTAPPDCQTKACNPVNFTIFNSSEPKWKEGFKISIRIDGRGLDPGAVLHFQRITFALQAASHSIFHSFYEEIRNTPPPIPATTKNLFLALAETIVQTLKVSSCYVCRGTNTGDHWPWQARELDPLELHNETAYPQLTNGVWLLRTAIIGRNCLVRRVGWFNVSVKSLTCLGLRYYNLTAQKTQWWSSSNRSEPKPNPLSNFSHLRQAWEDISTNIQWRAPKGLYWICGKMAYSILPQNWAGACVLGTIRPSFFLLPLSLGEQLGVPIYRVQGAQRDRRALQIGN", "length": 319, "header": "tr|A0A5G2QGG5-1|A0A5G2QGG5_PIG Isoform 1 of Fatty acid amide hydrolase 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGG5-1" }, "locus": { "chromosome": "X", "start_pos": 49715687, "end_pos": 49714731, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066721.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066721.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062897.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062897.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGG5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 319, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGG5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGG5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGH1-1", "uniprot_ac": "A0A5G2QGH1", "uniprot_id": "A0A5G2QGH1_PIG", "mass": { "chemical_mass": 77666.0, "monoisotopic_mass": 77666.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044312", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044312", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616:SF100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616:SF100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTVNDNMEAQNEEPQLSKPSDSKTMVVTTSAFQFLVPETLPTEEVPEENQTLDPLSTYPWSEGENEDTLETLDKDEQKDETPHDRPYWTNKTEYFLAQVGFSVGMSTIWRFPYLCFHNGGGVRNLSWPLQGGGQVPESLEPWEYGSRISEILVCIIVGLYYSVLLAWNFFYLVQSFQSPLPWLLCPIANNLSAYDPECARTTPATYFWYRKVLKATDEIEMGGLPILHLSVSLFVIWLIICISMIKGLKSTGKMLYVSVLLPYVILFCLLIQSLKMKGANFGLKNLLAAKVPALYSVEVWRRTGSQLFLSLGPGFGSFTAISSYIPRSNDCVIDAFAVAFLNLVASVTITVFVFATLGHLATKDNELCYMMNIMTLINMVDAEMIPPEAKPPKNVYQDPSSLYPSWLNSLPEHIKIAILPYLVECDLSEQLNKVMVGPGVAIVAFSNIITVFSGSTFWAIVIFTLLVNLGLSTMVGIIQGIVTPLQDTFSSLREYSKLLPVSICVPMFLGSLLFVRPSGSYYVNLLDDYWASLALFFIVILESVAMAWIYGARRFLADLSIMLGRPISPIYRWLWCFLSPFVLLVLFLSTLIHLSVKKITYFAWDSRISDEVTRVYPSWAKVLLTVLILVTILPVPAYFFHTIVRRLASATVIHSMTTVVFKPEAKGGSPKGLPRLQVRQSLKKMNKMDK", "length": 691, "header": "tr|A0A5G2QGH1-1|A0A5G2QGH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QGH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1/entry", "sequence": { "sequence": "MTTVNDNMEAQNEEPQLSKPSDSKTMVVTTSAFQFLVPETLPTEEVPEENQTLDPLSTYPWSEGENEDTLETLDKDEQKDETPHDRPYWTNKTEYFLAQVGFSVGMSTIWRFPYLCFHNGGGVRNLSWPLQGGGQVPESLEPWEYGSRISEILVCIIVGLYYSVLLAWNFFYLVQSFQSPLPWLLCPIANNLSAYDPECARTTPATYFWYRKVLKATDEIEMGGLPILHLSVSLFVIWLIICISMIKGLKSTGKMLYVSVLLPYVILFCLLIQSLKMKGANFGLKNLLAAKVPALYSVEVWRRTGSQLFLSLGPGFGSFTAISSYIPRSNDCVIDAFAVAFLNLVASVTITVFVFATLGHLATKDNELCYMMNIMTLINMVDAEMIPPEAKPPKNVYQDPSSLYPSWLNSLPEHIKIAILPYLVECDLSEQLNKVMVGPGVAIVAFSNIITVFSGSTFWAIVIFTLLVNLGLSTMVGIIQGIVTPLQDTFSSLREYSKLLPVSICVPMFLGSLLFVRPSGSYYVNLLDDYWASLALFFIVILESVAMAWIYGARRFLADLSIMLGRPISPIYRWLWCFLSPFVLLVLFLSTLIHLSVKKITYFAWDSRISDEVTRVYPSWAKVLLTVLILVTILPVPAYFFHTIVRRLASATVIHSMTTVVFKPEAKGGSPKGLPRLQVRQSLKKMNKMDK", "length": 691, "header": "tr|A0A5G2QGH1-1|A0A5G2QGH1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QGH1-1" }, "locus": { "chromosome": "6", "start_pos": 54414305, "end_pos": 54404831, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069650.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069650.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063394.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063394.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "amino acid transport", "id": "GO:0006865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006865", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "pmid": "" }, { "name": "sodium ion transmembrane transport", "id": "GO:0035725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035725", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 691, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGH1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGH7-1", "uniprot_ac": "A0A5G2QGH7", "uniprot_id": "A0A5G2QGH7_PIG", "mass": { "chemical_mass": 50192.0, "monoisotopic_mass": 50192.0 }, "refseq": { "ac": "XP_020946649", "name": "coiled-coil domain-containing protein 91 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946649" }, "gene_names": [ { "name": "CCDC91", "type": "recommended", "evidence": [ { "id": "A0A5G2QGH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ] }, { "name": "CCDC91", "type": "synonym", "evidence": [ { "id": "XP_020946649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946649" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 91", "type": "synonym", "evidence": [ { "id": "A0A5G2QGH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 91 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020946649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946649" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7", "locus": { "chromosome": "5", "start_pos": 45138057, "end_pos": 45525650, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024232", "url": "https://www.ensembl.org/id/ENSSSCG00000024232" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024232", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024232", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513281", "url": "https://www.ncbi.nlm.nih.gov/gene/100513281", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR034592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGH7", "url": "https://www.orthodb.org/?gene=A0A5G2QGH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35072:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35072:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020946649", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946649", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BS84", "url": "https://www.uniprot.org/uniprotkb/A0A287BS84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NCD4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NCD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NCD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NCD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RCZ2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RCZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RCZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RCZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDDDFGGFEAAEIFDGGNGETQTTSPAIPWAAFPTVSGVHLSPAAPEIVLDHDHTSPSVGCLSSEPIISSPENIHAGNSIVSQTLPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEMKLKVSEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNTQHQRLLEMLDTEKELLKEKIQEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKAIEEERKHMEKVHAEERELWKTEHAKDQEKVSQAIQTAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYVKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVDIE", "length": 442, "header": "tr|A0A5G2QGH7-1|A0A5G2QGH7_PIG Isoform 1 of Coiled-coil domain containing 91 OS=Sus scrofa OX=9823 GN=CCDC91 PE=4 SV=1 CANONICAL=A0A5G2QGH7-1" }, "isoforms": [ { "isoform_ac": "A0A287BS84-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS84/entry", "sequence": { "sequence": "MDDDDFGGFEAAEIFDGGNGETQTTSPAIPWAAFPTVSGVHLSPAAPEIVLDHDHTSPSVGCLSSEPIISSPENIHAGNSIVSQTLPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEMKLKVSEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNTQHQRLLEMLDTEKELLKEKIQEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKAIEEERKHMEKVHAEERELWKTEHAKDQEKVSQAIQTAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYVKEQKRLDQVIRQDLHISLL", "length": 420, "header": "tr|A0A287BS84-1|A0A287BS84_PIG Computationally mapped isoform of Coiled-coil domain containing 91 OS=Sus scrofa OX=9823 GN=CCDC91 PE=4 SV=3 CANONICAL=A0A5G2QGH7-1" }, "locus": { "chromosome": "5", "start_pos": 45443122, "end_pos": 45155032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052045.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052045.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059296.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059296.3" } ] } }, { "isoform_ac": "A0A5G2QGH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7/entry", "sequence": { "sequence": "MDDDDFGGFEAAEIFDGGNGETQTTSPAIPWAAFPTVSGVHLSPAAPEIVLDHDHTSPSVGCLSSEPIISSPENIHAGNSIVSQTLPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEMKLKVSEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNTQHQRLLEMLDTEKELLKEKIQEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKAIEEERKHMEKVHAEERELWKTEHAKDQEKVSQAIQTAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYVKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVDIE", "length": 442, "header": "tr|A0A5G2QGH7-1|A0A5G2QGH7_PIG Isoform 1 of Coiled-coil domain containing 91 OS=Sus scrofa OX=9823 GN=CCDC91 PE=4 SV=1 CANONICAL=A0A5G2QGH7-1" }, "locus": { "chromosome": "5", "start_pos": 45443122, "end_pos": 45167087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085715.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085715.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061101.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061101.1" } ] } }, { "isoform_ac": "A0A8D0NCD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NCD4/entry", "sequence": { "sequence": "MDDDDFGGFEAAEIFDGGNGETQTTSPAIPWAAFPTVSGVHLSPAAPEIVLDHDHTSPSVGCLSSEPIISSPENIHAGNSIVSQTLPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEMKLKVSEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNTQEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKAIEEERKHMEKVHAEERELWKTEHAKDQEKVSQAIQTAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYVKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVDIE", "length": 411, "header": "tr|A0A8D0NCD4-1|A0A8D0NCD4_PIG Computationally mapped isoform of Coiled-coil domain containing 91 OS=Sus scrofa OX=9823 GN=CCDC91 PE=4 SV=1 CANONICAL=A0A5G2QGH7-1" }, "locus": { "chromosome": "5", "start_pos": 45443122, "end_pos": 45167087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059615.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059615.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040192.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040192.1" } ] } }, { "isoform_ac": "A0A8D0RCZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RCZ2/entry", "sequence": { "sequence": "MDDDDFGGFEAAEIFDGGNGETQTTSPAIPWAAFPTVSGVHLSPAAPEIVLDHDHTSPSVGCLSSEPIISSPENIHAGNSIVSQTLPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEMKLKVSEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKEKIQEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKAIEEERKHMEKVHAEERELWKTEHAKDQEKVSQAIQTAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYVKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVDIE", "length": 406, "header": "tr|A0A8D0RCZ2-1|A0A8D0RCZ2_PIG Computationally mapped isoform of Coiled-coil domain containing 91 OS=Sus scrofa OX=9823 GN=CCDC91 PE=4 SV=1 CANONICAL=A0A5G2QGH7-1" }, "locus": { "chromosome": "5", "start_pos": 45443122, "end_pos": 45167087, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069766.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069766.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066623.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066623.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "Golgi to lysosome transport", "id": "GO:0090160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090160", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "pmid": "" }, { "name": "Golgi vesicle transport", "id": "GO:0048193", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048193", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGI2-1", "uniprot_ac": "A0A5G2QGI2", "uniprot_id": "A0A5G2QGI2_PIG", "mass": { "chemical_mass": 11090.0, "monoisotopic_mass": 11090.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QGI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSILYPATLLNLFISSRSFWVESLGFSMYRIMSSAYSDSLISSLPIWMPLISFVCLIAVAKTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QGI2-1|A0A5G2QGI2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGI2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2/entry", "sequence": { "sequence": "MSILYPATLLNLFISSRSFWVESLGFSMYRIMSSAYSDSLISSLPIWMPLISFVCLIAVAKTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QGI2-1|A0A5G2QGI2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGI2-1" }, "locus": { "chromosome": "X", "start_pos": 100060357, "end_pos": 100004746, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088287.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088287.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061106.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061106.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGK0-1", "uniprot_ac": "A0A5G2QGK0", "uniprot_id": "A0A5G2QGK0_PIG", "mass": { "chemical_mass": 19461.0, "monoisotopic_mass": 19461.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045672", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045672", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QGK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGIAYLISFSAFSLLVYRNAVDFCVLILYPATLPNSWMSSNSFLVESLGFSRYSIISSANSDSFTSSFPIWIPFISFTSLIAVARTFRTMLKSSGESTHPCLVTDLSGNSFSFSPLRMMFTVGLSYMAFIMLRQFPLCPLSEGFLSEMGVIFCQRLFLRLLRGSYGFYSSVC", "length": 174, "header": "tr|A0A5G2QGK0-1|A0A5G2QGK0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGK0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0/entry", "sequence": { "sequence": "MVNGIAYLISFSAFSLLVYRNAVDFCVLILYPATLPNSWMSSNSFLVESLGFSRYSIISSANSDSFTSSFPIWIPFISFTSLIAVARTFRTMLKSSGESTHPCLVTDLSGNSFSFSPLRMMFTVGLSYMAFIMLRQFPLCPLSEGFLSEMGVIFCQRLFLRLLRGSYGFYSSVC", "length": 174, "header": "tr|A0A5G2QGK0-1|A0A5G2QGK0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGK0-1" }, "locus": { "chromosome": "8", "start_pos": 13264155, "end_pos": 13263634, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072051.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072051.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063424.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063424.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 174, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGK0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGK0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGQ2-1", "uniprot_ac": "A0A5G2QGQ2", "uniprot_id": "A0A5G2QGQ2_PIG", "mass": { "chemical_mass": 72966.0, "monoisotopic_mass": 72966.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF283", "type": "recommended", "evidence": [ { "id": "A0A5G2QGQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ] } ], "protein_names": [ { "name": "Zinc finger protein 283", "type": "recommended", "evidence": [ { "id": "A0A5G2QGQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 331", "type": "synonym", "evidence": [ { "id": "A0A5G2QGQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation. May play a role in spermatogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2#function" }, { "database": "UniProtKB", "id": "ARBA00054984", "url": "https://www.uniprot.org/uniprotkb/ARBA00054984#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF283", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003072", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003072", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SGFSGRSAIEEPYGTLISSSSSRTMTDGSVTFKDVAINFSAEEWEFLDSAQRDLYVNVMLENYSNLVSLDWESTYETQNTSSKKNIFEINFSQWEIVESSETLDLEASVFKNNWKCESGFEELQGHQEGYLSQMIISYEKVPAYRKHESLTAHPSIHKQEKPYICQECEKAGSRDSKLIQHERIHLAEKHFECEECGKDFLSAYQLTMHQKFHTGEKPYECKECGKTFSWGSSLVKHERIHTGEKPYECKDCGKAFSRGYHLTQHQKIHIGIKSYECKECGKAFFWGSSLAKHEIIHTGEKPYKCKECGKAFSRGYQLTQHQKIHTGKKPYECKICGKAFCWGYQLTRHQIFHTGKKPYECKECGKTFNCGSSLVQHERIHTGEKPYECKECGKAFSRGYHLTQHQKIHTGEKPFECKECGKAFSWGSSLVKHERVHTGEKSYECTECGKTFGSGYQLTRHQIFHTGKKPYECKECGKTFNCGSSLVQHERIHTGERPYGCKDCGKAFSRGYHLTQHQKIHTGEKPFICKECGKAFSWGSSLAKHKRVHIREKSYDCKAYGKALGSGYQFSVHQRIHTGGQPYPREDFGKTFTYDSSLVQHEGIHSNDKPYKYTECGEAFIWTVYSDETVDAAETL", "length": 636, "header": "tr|A0A5G2QGQ2-1|A0A5G2QGQ2_PIG Isoform 1 of Zinc finger protein 283 OS=Sus scrofa OX=9823 GN=ZNF283 PE=3 SV=1 CANONICAL=A0A5G2QGQ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2/entry", "sequence": { "sequence": "SGFSGRSAIEEPYGTLISSSSSRTMTDGSVTFKDVAINFSAEEWEFLDSAQRDLYVNVMLENYSNLVSLDWESTYETQNTSSKKNIFEINFSQWEIVESSETLDLEASVFKNNWKCESGFEELQGHQEGYLSQMIISYEKVPAYRKHESLTAHPSIHKQEKPYICQECEKAGSRDSKLIQHERIHLAEKHFECEECGKDFLSAYQLTMHQKFHTGEKPYECKECGKTFSWGSSLVKHERIHTGEKPYECKDCGKAFSRGYHLTQHQKIHIGIKSYECKECGKAFFWGSSLAKHEIIHTGEKPYKCKECGKAFSRGYQLTQHQKIHTGKKPYECKICGKAFCWGYQLTRHQIFHTGKKPYECKECGKTFNCGSSLVQHERIHTGEKPYECKECGKAFSRGYHLTQHQKIHTGEKPFECKECGKAFSWGSSLVKHERVHTGEKSYECTECGKTFGSGYQLTRHQIFHTGKKPYECKECGKTFNCGSSLVQHERIHTGERPYGCKDCGKAFSRGYHLTQHQKIHTGEKPFICKECGKAFSWGSSLAKHKRVHIREKSYDCKAYGKALGSGYQFSVHQRIHTGGQPYPREDFGKTFTYDSSLVQHEGIHSNDKPYKYTECGEAFIWTVYSDETVDAAETL", "length": 636, "header": "tr|A0A5G2QGQ2-1|A0A5G2QGQ2_PIG Isoform 1 of Zinc finger protein 283 OS=Sus scrofa OX=9823 GN=ZNF283 PE=3 SV=1 CANONICAL=A0A5G2QGQ2-1" }, "locus": { "chromosome": "6", "start_pos": 50677048, "end_pos": 50660723, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076732.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076732.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062988.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062988.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGQ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 636, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGQ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGQ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 190, "start_aa": "Tyr", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QGQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 102, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGQ9-1", "uniprot_ac": "A0A5G2QGQ9", "uniprot_id": "A0A5G2QGQ9_PIG", "mass": { "chemical_mass": 7489.0, "monoisotopic_mass": 7489.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049560", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049560", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR015157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09072", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09072", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LSGREPDYSPRNRFEEMEEEDKALKKKQKEEQKKLEELKARASGKGPLATAGIKKSGKNWLCLRQ", "length": 65, "header": "tr|A0A5G2QGQ9-1|A0A5G2QGQ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGQ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9/entry", "sequence": { "sequence": "LSGREPDYSPRNRFEEMEEEDKALKKKQKEEQKKLEELKARASGKGPLATAGIKKSGKNWLCLRQ", "length": 65, "header": "tr|A0A5G2QGQ9-1|A0A5G2QGQ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGQ9-1" }, "locus": { "chromosome": "6", "start_pos": 86305250, "end_pos": 86304432, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063494.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063494.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGQ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 65, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGQ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGQ9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGR4-1", "uniprot_ac": "A0A5G2QGR4", "uniprot_id": "A0A5G2QGR4_PIG", "mass": { "chemical_mass": 45365.0, "monoisotopic_mass": 45365.0 }, "refseq": { "ac": "XP_003481748", "name": "protein arginine N-methyltransferase 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481748" }, "gene_names": [ { "name": "PRMT8", "type": "recommended", "evidence": [ { "id": "A0A5G2QGR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ] }, { "name": "PRMT8", "type": "synonym", "evidence": [ { "id": "XP_003481748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481748" } ] } ], "protein_names": [ { "name": "type I protein arginine methyltransferase", "type": "recommended", "evidence": [ { "id": "A0A5G2QGR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.319", "type": "synonym", "evidence": [ { "id": "A0A5G2QGR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4/entry#names_and_taxonomy" } ] }, { "name": "protein arginine N-methyltransferase 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481748" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRMT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4", "locus": { "chromosome": "5", "start_pos": 66667899, "end_pos": 66838922, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000730", "url": "https://www.ensembl.org/id/ENSSSCG00000000730" } ] } } ], "crossref": [ { "id": "A0A5G2QGR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000730", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000730", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100526051", "url": "https://www.ncbi.nlm.nih.gov/gene/100526051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526051", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526051", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTHTKVK", "url": "https://omabrowser.org/oma/group/CTHTKVK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGR4", "url": "https://www.orthodb.org/?gene=A0A5G2QGR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11006:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11006:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06325", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06325", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22528", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22528", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481748", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "48096", "url": "https://www.rhea-db.org/rhea/48096", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "48100", "url": "https://www.rhea-db.org/rhea/48100", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZLD5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTQ4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6F8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6F8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKY6", "url": "https://www.uniprot.org/uniprotkb/F1SKY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKY6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKY6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAAENTEVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 394, "header": "tr|A0A5G2QGR4-1|A0A5G2QGR4_PIG Isoform 1 of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=1 CANONICAL=A0A5G2QGR4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLD5/entry", "sequence": { "sequence": "AARGMERSLWVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVVSAYPASAGAESEGRRGCRACSQVLTRTQSGRGLGLGASCTIRKAKREEVGKVGFGCDGITEEPSCRAPGDPPGLQNSR", "length": 431, "header": "tr|A0A286ZLD5-1|A0A286ZLD5_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=2 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66717734, "end_pos": 66669026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039617.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039617.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032380.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032380.2" } ] } }, { "isoform_ac": "A0A286ZTQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTQ4/entry", "sequence": { "sequence": "SEPPASEGFRLNEVSSVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 385, "header": "tr|A0A286ZTQ4-1|A0A286ZTQ4_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=2 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66838922, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040042.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040042.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035039.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035039.2" } ] } }, { "isoform_ac": "A0A5G2QGR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4/entry", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAAENTEVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 394, "header": "tr|A0A5G2QGR4-1|A0A5G2QGR4_PIG Isoform 1 of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=1 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66753868, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077366.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077366.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062998.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062998.1" } ] } }, { "isoform_ac": "A0A5G2QI41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI41/entry", "sequence": { "sequence": "MQTEARINFCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 349, "header": "tr|A0A5G2QI41-1|A0A5G2QI41_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=2 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66717347, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073876.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073876.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061673.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061673.2" } ] } }, { "isoform_ac": "A0A5G2QPM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM4/entry", "sequence": { "sequence": "MDPGQDHSLVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVVSAYPASAGAESEGRRGCRACSQVLTRTQSGRGLGLGASCTIRKAKREEVGKVGFGCDGITEEPSCRAPGDPPGLQNSR", "length": 430, "header": "tr|A0A5G2QPM4-1|A0A5G2QPM4_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=1 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66724252, "end_pos": 66669026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083940.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083940.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066655.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066655.1" } ] } }, { "isoform_ac": "A0A5G2QQ53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ53/entry", "sequence": { "sequence": "ILHCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 343, "header": "tr|A0A5G2QQ53-1|A0A5G2QQ53_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=2 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66717459, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079543.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079543.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066196.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066196.2" } ] } }, { "isoform_ac": "A0A8W4F6F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6F8/entry", "sequence": { "sequence": "MPRSSTAQPSAWGCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 353, "header": "tr|A0A8W4F6F8-1|A0A8W4F6F8_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=1 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66717222, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103999.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103999.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074712.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074712.1" } ] } }, { "isoform_ac": "F1SKY6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKY6/entry", "sequence": { "sequence": "TEPPKAPNSVSSPPIQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 378, "header": "tr|F1SKY6-1|F1SKY6_PIG Computationally mapped isoform of type I protein arginine methyltransferase OS=Sus scrofa OX=9823 GN=PRMT8 PE=1 SV=5 CANONICAL=A0A5G2QGR4-1" }, "locus": { "chromosome": "5", "start_pos": 66717555, "end_pos": 66668469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000793.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000793.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000777.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000777.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526051", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526051", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LPN7-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "Prmt8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAVESTEVSSAPPQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKVEEVELPVDKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0M8P3-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "Prmt8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAVESTEVSSAPPQPPQPVIPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MEB9-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "PRMT8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAAESTEVSSPPSQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLATVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQVQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNYYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NJK8-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "PRMT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENGAESTEVCPVPSQTPQPTVVPKPVQSVIHVPLQPGCPGRGKMAKFLSPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKIVLDVGSGTGILSMFAAKAGAKKVYGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVDKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELAFTSAFCLQIQRNDYIHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTIDLDFKGQLCEASVSNDYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P38074-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "HMT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSKTAVKDSATEKTKLSESEQHYFNSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLMH", "length": 348 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54EF2-1", "protein_name": "Protein arginine N-methyltransferase 1", "gene_name": "prmt1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTETNKNVDALEKINQMSSADYYFDSYSHFGIHEEMLKDEVRTLAYRRAIINNRKLFEGKVVLDVGCGTGILCMFAAQAGAKMVIGVDNSEMLPIAQKIITANNFDKTITLIKGKMEEVVLPVDKVDIIISEWMGYFMLYEGMLDTVLYARDKYLVPGGVILPDKASLYITAIEDQDYKEEKINYWNNVYGFDMSCIREIALKEPLVDVVQPNMIVTNDCCILTVDIMTITKDELKFRSDFKLKALRDDLIHAFVVYFDIEFSKGDKPVCFSTGPKAKYTHWKQSIMYFEDHIKIQQGEIITGTMDCAPFDKNQRDLKIKLDFNFAGELMKSSSSLEYHMR", "length": 341 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6PAK3-1", "protein_name": "Protein arginine N-methyltransferase 8", "gene_name": "Prmt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAVESTEVSSAPPQPPQPVIPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NR22-1", "protein_name": "Protein arginine N-methyltransferase 8", "gene_name": "PRMT8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGMKHSSRCLLLRRKMAENAAESTEVNSPPSQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR", "length": 394 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SU94-1", "protein_name": "Protein arginine N-methyltransferase 1.1", "gene_name": "PRMT11", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTKNSNHDENEFISFEPNQNTKIRFEDADEDEVAEGSGVAGEETPQDESMFDAGESADTAEVTDDTTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRTQHYKMR", "length": 390 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VGW7-1", "protein_name": "type I protein arginine methyltransferase", "gene_name": "Art1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEMTSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGCGTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIEEIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDRGTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQVVSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKCHKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNRDLDFVIDINFKGELSQIQESNTYRMR", "length": 376 }, "evidence": [ { "id": "A0A5G2QGR4", "url": "https://omabrowser.org/oma/group/A0A5G2QGR4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "cytoplasmic side of plasma membrane", "id": "GO:0009898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009898", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "regulation of modification of postsynaptic actin cytoskeleton", "id": "GO:1905274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905274", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "protein-arginine omega-N asymmetric methyltransferase activity", "id": "GO:0035242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035242", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "histone methyltransferase activity", "id": "GO:0042054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042054", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "protein-arginine omega-N monomethyltransferase activity", "id": "GO:0035241", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035241", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "S-adenosyl-L-methionine binding", "id": "GO:1904047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904047", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" }, { "name": "histone H4 methyltransferase activity", "id": "GO:0140939", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140939", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "48096", "name": "", "equation": "L-arginyl-[protein] + 2 S-adenosyl-L-methionine = N(omega),N(omega)-dimethyl-L-arginyl-[protein] + 2 S-adenosyl-L-homocysteine + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48096", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48096" } ] }, { "id": "48100", "name": "", "equation": "L-arginyl-[protein] + S-adenosyl-L-methionine = N(omega)-methyl-L-arginyl-[protein] + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48100", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48100" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 394, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGR4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGR4" }, { "id": "PF22528", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22528" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein arginine N-methyltransferase", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 381, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGT0-1", "uniprot_ac": "A0A5G2QGT0", "uniprot_id": "A0A5G2QGT0_PIG", "mass": { "chemical_mass": 98818.0, "monoisotopic_mass": 98818.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QGT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QGT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051195", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051195", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QGT0-1|A0A5G2QGT0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QGT0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QGT0-1|A0A5G2QGT0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QGT0-1" }, "locus": { "chromosome": "2", "start_pos": 61653330, "end_pos": 61650796, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081162.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081162.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063519.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063519.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 845, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT0" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 345, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 638, "end_pos": 640 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGT3-1", "uniprot_ac": "A0A5G2QGT3", "uniprot_id": "A0A5G2QGT3_PIG", "mass": { "chemical_mass": 14850.0, "monoisotopic_mass": 14850.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGT3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048195", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048195", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QGT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGIASLISLSDLSLFVYRNAVDFCVLILNPVTLPNSWMSSNSFLVESLGFSRHSIMSSANSDSFTSSSPIWIPFISFTSLIALARTSKTMLESSGESRHPFLVPDLSGNSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QGT3-1|A0A5G2QGT3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGT3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3/entry", "sequence": { "sequence": "MVNGIASLISLSDLSLFVYRNAVDFCVLILNPVTLPNSWMSSNSFLVESLGFSRHSIMSSANSDSFTSSSPIWIPFISFTSLIALARTSKTMLESSGESRHPFLVPDLSGNSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QGT3-1|A0A5G2QGT3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGT3-1" }, "locus": { "chromosome": "2", "start_pos": 15697602, "end_pos": 15697198, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082468.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082468.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063018.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063018.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGT3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGU3-1", "uniprot_ac": "A0A5G2QGU3", "uniprot_id": "A0A5G2QGU3_PIG", "mass": { "chemical_mass": 18083.0, "monoisotopic_mass": 18083.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Secreted protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QGU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGU3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041237", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041237", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14198:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14198:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFPALLAMQGIMGALYRVVITSLGLLSGPLCDMGSGNYSYPFRTASLENSYLFTQPTWATCREPEHIVPWTVVVEAALCRSRVVSGPCLVFCGTCVQKRQILLKDFYESHKHLQMLVSAGVLEPILGRSQGTTVCIFPRSAVKTRSSKSPVTMSTPSAPSNYLF", "length": 165, "header": "tr|A0A5G2QGU3-1|A0A5G2QGU3_PIG Isoform 1 of Secreted protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3/entry", "sequence": { "sequence": "MLFPALLAMQGIMGALYRVVITSLGLLSGPLCDMGSGNYSYPFRTASLENSYLFTQPTWATCREPEHIVPWTVVVEAALCRSRVVSGPCLVFCGTCVQKRQILLKDFYESHKHLQMLVSAGVLEPILGRSQGTTVCIFPRSAVKTRSSKSPVTMSTPSAPSNYLF", "length": 165, "header": "tr|A0A5G2QGU3-1|A0A5G2QGU3_PIG Isoform 1 of Secreted protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGU3-1" }, "locus": { "chromosome": "9", "start_pos": 26293538, "end_pos": 26282107, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084591.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084591.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063534.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063534.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 165, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGU3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGV3-1", "uniprot_ac": "A0A5G2QGV3", "uniprot_id": "A0A5G2QGV3_PIG", "mass": { "chemical_mass": 20793.0, "monoisotopic_mass": 20793.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047604", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047604", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036167", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036167", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28582:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28582:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8A5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8A5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPYCCGCGVSRHSSGAPPCRARETRDSDCPPPPSVPVAWMGIHPHYLEMREFDIGDAAQVSMAFLVYQALVEGKLWHKVKGVELLDRQLTCFVDAEIGDGHRLRGLTIRTSFHHNRLFLLEDRPVLNDAYSYQIGFEIHQTASSFTLKIALAGPVPQVFFLKNKTFPDRGFGGVCGVFFPFSVFCL", "length": 186, "header": "tr|A0A5G2QGV3-1|A0A5G2QGV3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3/entry", "sequence": { "sequence": "MPYCCGCGVSRHSSGAPPCRARETRDSDCPPPPSVPVAWMGIHPHYLEMREFDIGDAAQVSMAFLVYQALVEGKLWHKVKGVELLDRQLTCFVDAEIGDGHRLRGLTIRTSFHHNRLFLLEDRPVLNDAYSYQIGFEIHQTASSFTLKIALAGPVPQVFFLKNKTFPDRGFGGVCGVFFPFSVFCL", "length": 186, "header": "tr|A0A5G2QGV3-1|A0A5G2QGV3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV3-1" }, "locus": { "chromosome": "5", "start_pos": 62914747, "end_pos": 62913591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070692.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070692.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061237.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061237.1" } ] } }, { "isoform_ac": "A0A5G2R8A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8A5/entry", "sequence": { "sequence": "MPYCCGCGVSRHSSGAPPCRARETRDSDCPPPPSVPVAWMGIHPHYLEMREFDIGDAAQVSMAFLVYQALVEGKLWHKVKGVELLDRQLTCFVDAEIGDGHRLAHTQKKGRVRTHQEGSCLKAWKRLLIRNQPHQCLDLGLPASRTVRK", "length": 149, "header": "tr|A0A5G2R8A5-1|A0A5G2R8A5_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV3-1" }, "locus": { "chromosome": "5", "start_pos": 62915438, "end_pos": 62913591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078312.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078312.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073503.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073503.1" } ] } }, { "isoform_ac": "A0A5G2RMP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMP2/entry", "sequence": { "sequence": "MPYCCGCGVSRHSSGAPPCRARETRDSDCPPPPSVPVAWMGIHPHYLEMREFDIGDAAQVSMAFLVYQALVEGKLWHKVKGVELLDRQLTCFVDAEIGDGHRLRAASLHPATATPDLNHVCDLHQSSWQSRILNPLIEAWDRTCNLMVPSRIR", "length": 153, "header": "tr|A0A5G2RMP2-1|A0A5G2RMP2_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV3-1" }, "locus": { "chromosome": "5", "start_pos": 62914952, "end_pos": 62913591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088412.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088412.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073899.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073899.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA splicing, via endonucleolytic cleavage and ligation", "id": "GO:0006388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006388", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGV3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGV3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGV3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGV7-1", "uniprot_ac": "A0A5G2QGV7", "uniprot_id": "A0A5G2QGV7_PIG", "mass": { "chemical_mass": 17875.0, "monoisotopic_mass": 17875.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042937", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042937", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QGV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSKSICITANGTISFFFMPKYYSMVYMYHTFFIHSSVTGHLSCFPILAIVNNAAMNIGVPVSFQISHFLKYMLWRGIAGLYGSYIFSFSRTFLIVFHSGCLSLHSHLQSMRVWVHFLSSPSGRGFLLSTQESKVCMCSVPVTQQHLFSTYVQEHSGT", "length": 158, "header": "tr|A0A5G2QGV7-1|A0A5G2QGV7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7/entry", "sequence": { "sequence": "MPSKSICITANGTISFFFMPKYYSMVYMYHTFFIHSSVTGHLSCFPILAIVNNAAMNIGVPVSFQISHFLKYMLWRGIAGLYGSYIFSFSRTFLIVFHSGCLSLHSHLQSMRVWVHFLSSPSGRGFLLSTQESKVCMCSVPVTQQHLFSTYVQEHSGT", "length": 158, "header": "tr|A0A5G2QGV7-1|A0A5G2QGV7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QGV7-1" }, "locus": { "chromosome": "14", "start_pos": 27205421, "end_pos": 27204948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087148.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087148.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061242.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGV7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGW8-1", "uniprot_ac": "A0A5G2QGW8", "uniprot_id": "A0A5G2QGW8_PIG", "mass": { "chemical_mass": 38477.0, "monoisotopic_mass": 38477.0 }, "refseq": {}, "gene_names": [ { "name": "DKK3", "type": "recommended", "evidence": [ { "id": "A0A5G2QGW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ] } ], "protein_names": [ { "name": "Dickkopf-related protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QGW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternary complex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. DKKs play an important role in vertebrate development, where they locally inhibit Wnt regulated processes such as antero-posterior axial patterning, limb development, somitogenesis and eye formation. In the adult, Dkks are implicated in bone formation and bone disease, cancer and Alzheimer disease.", "evidence": [ { "database": "UniProtKB", "id": "F6Q5E9", "url": "https://www.uniprot.org/uniprotkb/F6Q5E9#function" }, { "database": "UniProtKB", "id": "ARBA00054161", "url": "https://www.uniprot.org/uniprotkb/ARBA00054161#function" }, { "database": "UniProtKB", "id": "A0A5G2R0H3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0H3#function" }, { "database": "UniProtKB", "id": "A0A286ZNN6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNN6#function" }, { "database": "UniProtKB", "id": "A0A8W4FD44", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD44#function" }, { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8#function" }, { "database": "UniProtKB", "id": "A0A5G2QUM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DKK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8", "locus": { "chromosome": "2", "start_pos": 47444660, "end_pos": 47385192, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013401", "url": "https://www.ensembl.org/id/ENSSSCG00000013401" } ] } } ], "crossref": [ { "id": "A0A5G2QGW8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013401", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013401", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23014", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23014", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23274", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23274", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "664653", "url": "https://www.ncbi.nlm.nih.gov/gene/664653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F6Q5E9", "url": "https://www.orthodb.org/?gene=F6Q5E9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12113:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12113:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04706", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04706", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZNN6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0H3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0H3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD44", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q5E9", "url": "https://www.uniprot.org/uniprotkb/F6Q5E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q5E9-1", "url": "https://www.uniprot.org/uniprotkb/F6Q5E9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSELAATSELLEGEEI", "length": 349, "header": "tr|A0A5G2QGW8-1|A0A5G2QGW8_PIG Isoform 1 of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=1 CANONICAL=A0A5G2QGW8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNN6/entry", "sequence": { "sequence": "MLGGGTRGGRRAEMRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSELAATSELLEGEEI", "length": 333, "header": "tr|A0A286ZNN6-1|A0A286ZNN6_PIG Computationally mapped isoform of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=2 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443273, "end_pos": 47385746, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061517.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061517.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033075.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033075.2" } ] } }, { "isoform_ac": "A0A5G2QGW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8/entry", "sequence": { "sequence": "MRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSELAATSELLEGEEI", "length": 349, "header": "tr|A0A5G2QGW8-1|A0A5G2QGW8_PIG Isoform 1 of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=1 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443273, "end_pos": 47386352, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072979.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072979.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061257.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061257.1" } ] } }, { "isoform_ac": "A0A5G2QUM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM6/entry", "sequence": { "sequence": "GGGTRGGRRAEMRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSELAATSELLEGEEI", "length": 331, "header": "tr|A0A5G2QUM6-1|A0A5G2QUM6_PIG Computationally mapped isoform of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=2 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443273, "end_pos": 47386319, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069339.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069339.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061871.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061871.2" } ] } }, { "isoform_ac": "A0A5G2R0H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0H3/entry", "sequence": { "sequence": "MTMDWDAAGQWDARKGTASRRAKPRSKRGQPGVGDRLGTRRPMAAGWATAPPMGRGLAGGRAGRALRARPGTSPAASPPLSQHSGPAHRAAPAPQPGGSPRRGLADPDPSAARSMLGGGTRGGRRAEMRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSCFPRCGLSRLFSTASPQYTFPLA", "length": 485, "header": "tr|A0A5G2R0H3-1|A0A5G2R0H3_PIG Computationally mapped isoform of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=2 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443403, "end_pos": 47385404, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085402.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085402.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064010.2" } ] } }, { "isoform_ac": "A0A8W4FD44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD44/entry", "sequence": { "sequence": "MTMDWDAAGQWDARKGTASRRAKPRSKRGQPGVGDRLGTRRPMAAGWATAPPMGRGLAGGRAGRALRARPGTSPAASPPLSQHSGPAHRAAPAPQPGGSPRRGLADPDPSAARSMLGGGTRGGRRAEMRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKGIVGQLICLPLTKMFPPPSRPFQECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSDCFPRCGLSRLFSTASPQYTFPLA", "length": 481, "header": "tr|A0A8W4FD44-1|A0A8W4FD44_PIG Computationally mapped isoform of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=1 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443403, "end_pos": 47385404, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096272.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096272.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077242.1" } ] } }, { "isoform_ac": "F6Q5E9-1", "url": "https://www.uniprot.org/uniprotkb/F6Q5E9/entry", "sequence": { "sequence": "MAWKGQGGGTRGGRRAEMRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGSRDEDGESLVPREVPEEYEDGGFMEEVRRELENLERSLSVEMALSELAATSELLEGEEI", "length": 366, "header": "tr|F6Q5E9-1|F6Q5E9_PIG Computationally mapped isoform of Dickkopf-related protein 3 OS=Sus scrofa OX=9823 GN=DKK3 PE=1 SV=1 CANONICAL=A0A5G2QGW8-1" }, "locus": { "chromosome": "2", "start_pos": 47443273, "end_pos": 47385315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014641.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014641.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014246.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014246.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 26, "start_aa": "Thr", "end_pos": 26, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr26", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "negative regulation of Wnt signaling pathway", "id": "GO:0030178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "adrenal gland development", "id": "GO:0030325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030325", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "negative regulation of aldosterone biosynthetic process", "id": "GO:0032348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032348", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "negative regulation of cortisol biosynthetic process", "id": "GO:2000065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000065", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "receptor antagonist activity", "id": "GO:0048019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048019", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" }, { "name": "co-receptor binding", "id": "GO:0039706", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039706", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 349, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGW8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW8" }, { "id": "PF04706", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04706" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dickkopf N-terminal cysteine-rich", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 196, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 26 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 121, "end_pos": 123 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGX4-1", "uniprot_ac": "A0A5G2QGX4", "uniprot_id": "A0A5G2QGX4_PIG", "mass": { "chemical_mass": 34513.0, "monoisotopic_mass": 34513.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGX4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGX4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043817", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043817", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVSNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLCIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPIHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 296, "header": "tr|A0A5G2QGX4-1|A0A5G2QGX4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGX4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVSNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLCIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPIHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 296, "header": "tr|A0A5G2QGX4-1|A0A5G2QGX4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QGX4-1" }, "locus": { "chromosome": "1", "start_pos": 201506007, "end_pos": 201505120, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089614.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089614.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065761.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065761.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGX4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 296, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGX4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGX4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 293, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX4" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGX5-1", "uniprot_ac": "A0A5G2QGX5", "uniprot_id": "A0A5G2QGX5_PIG", "mass": { "chemical_mass": 17776.0, "monoisotopic_mass": 17776.0 }, "refseq": {}, "gene_names": [ { "name": "LMO1", "type": "recommended", "evidence": [ { "id": "A0A5G2QGX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ] } ], "protein_names": [ { "name": "LIM domain only 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QGX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMO1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5", "locus": { "chromosome": "9", "start_pos": 1082974, "end_pos": 1076938, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023057", "url": "https://www.ensembl.org/id/ENSSSCG00000023057" } ] } } ], "crossref": [ { "id": "A0A5G2QGX5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023057", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023057", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09388", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09388", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09389", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09389", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45787", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45787", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45787:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45787:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Z8", "url": "https://www.uniprot.org/uniprotkb/I3L7Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Z8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LSWQDKQGCVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLDYEEGQLTGAFEPQAQ", "length": 156, "header": "tr|A0A5G2QGX5-1|A0A5G2QGX5_PIG Isoform 1 of LIM domain only 1 OS=Sus scrofa OX=9823 GN=LMO1 PE=4 SV=1 CANONICAL=A0A5G2QGX5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5/entry", "sequence": { "sequence": "LSWQDKQGCVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLDYEEGQLTGAFEPQAQ", "length": 156, "header": "tr|A0A5G2QGX5-1|A0A5G2QGX5_PIG Isoform 1 of LIM domain only 1 OS=Sus scrofa OX=9823 GN=LMO1 PE=4 SV=1 CANONICAL=A0A5G2QGX5-1" }, "locus": { "chromosome": "9", "start_pos": 1082746, "end_pos": 1076938, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090004.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090004.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063063.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063063.1" } ] } }, { "isoform_ac": "I3L7Z8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Z8/entry", "sequence": { "sequence": "MQKRARVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLDYEEGQLTGAFEPQAQ", "length": 153, "header": "tr|I3L7Z8-1|I3L7Z8_PIG Computationally mapped isoform of LIM domain only 1 OS=Sus scrofa OX=9823 GN=LMO1 PE=4 SV=2 CANONICAL=A0A5G2QGX5-1" }, "locus": { "chromosome": "9", "start_pos": 1082746, "end_pos": 1077269, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022371.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022371.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020156.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGX5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 156, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGX5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGX5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX5" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 84, "start_aa": "Lys", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGY3-1", "uniprot_ac": "A0A5G2QGY3", "uniprot_id": "A0A5G2QGY3_PIG", "mass": { "chemical_mass": 67623.0, "monoisotopic_mass": 67623.0 }, "refseq": { "ac": "XP_003126888", "name": "gigaxonin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126888" }, "gene_names": [ { "name": "GAN", "type": "recommended", "evidence": [ { "id": "A0A5G2QGY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ] }, { "name": "GAN", "type": "synonym", "evidence": [ { "id": "XP_003126888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126888" } ] } ], "protein_names": [ { "name": "Gigaxonin", "type": "recommended", "evidence": [ { "id": "A0A5G2QGY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3/entry#names_and_taxonomy" } ] }, { "name": "gigaxonin", "type": "synonym", "evidence": [ { "id": "XP_003126888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126888" } ] } ], "function": [ { "annotation": "Probable cytoskeletal component that directly or indirectly plays an important role in neurofilament architecture. May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Controls degradation of TBCB. Controls degradation of MAP1B and MAP1S, and is critical for neuronal maintenance and survival.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3#function" }, { "database": "UniProtKB", "id": "ARBA00054337", "url": "https://www.uniprot.org/uniprotkb/ARBA00054337#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GAN", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3", "locus": { "chromosome": "6", "start_pos": 6933503, "end_pos": 6989653, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002690", "url": "https://www.ensembl.org/id/ENSSSCG00000002690" } ] } } ], "crossref": [ { "id": "A0A5G2QGY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002690", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002690", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18245", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18245", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18455", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18455", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518489", "url": "https://www.ncbi.nlm.nih.gov/gene/100518489", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518489", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518489", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHVHYVA", "url": "https://omabrowser.org/oma/group/QHVHYVA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QGY3", "url": "https://www.orthodb.org/?gene=A0A5G2QGY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126888", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126888", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S473", "url": "https://www.uniprot.org/uniprotkb/F1S473", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S473-1", "url": "https://www.uniprot.org/uniprotkb/F1S473-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGSAVSDPHHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEETIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLSEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTVGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVFGGQDENKQTLSSGEKYDPDANTWTALPPMNEARHNFGIVEIDGMLYVLGGEDGEKELISMECYDTYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGGEMVTCKSEFYHDEFKRWIYLNDQNLCIPTSSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597, "header": "tr|A0A5G2QGY3-1|A0A5G2QGY3_PIG Isoform 1 of Gigaxonin OS=Sus scrofa OX=9823 GN=GAN PE=4 SV=1 CANONICAL=A0A5G2QGY3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3/entry", "sequence": { "sequence": "MAEGSAVSDPHHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEETIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLSEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTVGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVFGGQDENKQTLSSGEKYDPDANTWTALPPMNEARHNFGIVEIDGMLYVLGGEDGEKELISMECYDTYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGGEMVTCKSEFYHDEFKRWIYLNDQNLCIPTSSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597, "header": "tr|A0A5G2QGY3-1|A0A5G2QGY3_PIG Isoform 1 of Gigaxonin OS=Sus scrofa OX=9823 GN=GAN PE=4 SV=1 CANONICAL=A0A5G2QGY3-1" }, "locus": { "chromosome": "6", "start_pos": 6989479, "end_pos": 6934359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089898.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089898.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061272.1" } ] } }, { "isoform_ac": "F1S473-1", "url": "https://www.uniprot.org/uniprotkb/F1S473/entry", "sequence": { "sequence": "MAEGSAVSDPHHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEETIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDSSYLREQMLSEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTVGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVFGGQDENKQTLSSGEKYDPDANTWTALPPMNEARHNFGIVEIDGMLYVLGGEDGEKELISMECYDTYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGGEMVTCKSEFYHDEFKRWIYLNDQNLCIPTSSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 586, "header": "tr|F1S473-1|F1S473_PIG Computationally mapped isoform of Gigaxonin OS=Sus scrofa OX=9823 GN=GAN PE=4 SV=3 CANONICAL=A0A5G2QGY3-1" }, "locus": { "chromosome": "6", "start_pos": 6989479, "end_pos": 6934359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002983.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002983.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002904.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002904.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518489", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518489", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XN98-1", "protein_name": "Gigaxonin", "gene_name": "GAN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGPSAVSDPQHPARLLRALSSFREESRFCDAHLVLEGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVDIMKEILDYIFSGQIRLNEETIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLASEYLETHFRDVSSTEEFLELTPQKLKEVLSMEKLNVGNERYVFEAVIRWISHDSESRKVHMKDVMSAVWVSGLDAAYLREQMMSEPLVREIVKECNNIPLTPPQQGEAMLASFKPRGYSECIVTVGGEERVSRKPTSVMRCMCPLYDPNRQLWIELAPMSIPRINHGVLSAEGFLFVLGGQDENKGTLSSGEKYDPDTNSWSSLPPMNEARHNFGVVEIDGILYILGGEDGERELISMETYDIYNRTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVASELYVFGGVRSRDDSQASEMVTCKSEFYHDEFKRWIYLNDQNLCIPTSSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWQRTKPLFPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVPSP", "length": 597 }, "evidence": [ { "id": "A0A5G2QGY3", "url": "https://omabrowser.org/oma/group/A0A5G2QGY3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LN48-1", "protein_name": "Gigaxonin", "gene_name": "Gan", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEGSAVSDPQHAARLLRALSSFREEARFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVTIMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDVEMRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTIGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVLGGQDENKQTLSSGEKYDPDANTWTALPPMNEARHNFGIVEIDGMLYILGGEDGDRELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGSEMVTCKSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597 }, "evidence": [ { "id": "A0A5G2QGY3", "url": "https://omabrowser.org/oma/group/A0A5G2QGY3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CA72-1", "protein_name": "Gigaxonin", "gene_name": "Gan", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEGSAVSDPQHAARLLRALSSFREEARFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDVEMRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLASFKPRGYSECIVTIGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVLGGQDENKQTLSSGEKYDPDANTWTALPPMHEARHNFGIVEIDGMLYILGGEDGDRELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDIQGSEMVTCKSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597 }, "evidence": [ { "id": "A0A5G2QGY3", "url": "https://omabrowser.org/oma/group/A0A5G2QGY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2C0-1", "protein_name": "Gigaxonin", "gene_name": "GAN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLANFKPRGYSECIVTVGGEERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVFGGQDENKQTLSSGEKYDPDANTWTALPPMNEARHNFGIVEIDGMLYILGGEDGEKELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMKKKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDAQGSEMVTCKSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPLLPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP", "length": 597 }, "evidence": [ { "id": "A0A5G2QGY3", "url": "https://omabrowser.org/oma/group/A0A5G2QGY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 597, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGY3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY3" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 99, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QGZ8-1", "uniprot_ac": "A0A5G2QGZ8", "uniprot_id": "A0A5G2QGZ8_PIG", "mass": { "chemical_mass": 32513.0, "monoisotopic_mass": 32513.0 }, "refseq": {}, "gene_names": [ { "name": "BSG", "type": "recommended", "evidence": [ { "id": "A0A5G2QGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ] } ], "protein_names": [ { "name": "Basigin", "type": "recommended", "evidence": [ { "id": "A0A5G2QGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BSG", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QGZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027907", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027907", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10075", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10075", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10075:SF107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10075:SF107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTSSQWPGFFPFHLIFGCPGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDGVCRIPTCSMGSIGPALLTPPSSFACAAPCTDEDTGSAPLKSSGHHVNDKGKNVRQRNAS", "length": 298, "header": "tr|A0A5G2QGZ8-1|A0A5G2QGZ8_PIG Isoform 1 of Basigin OS=Sus scrofa OX=9823 GN=BSG PE=1 SV=2 CANONICAL=A0A5G2QGZ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8/entry", "sequence": { "sequence": "MGTSSQWPGFFPFHLIFGCPGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDGVCRIPTCSMGSIGPALLTPPSSFACAAPCTDEDTGSAPLKSSGHHVNDKGKNVRQRNAS", "length": 298, "header": "tr|A0A5G2QGZ8-1|A0A5G2QGZ8_PIG Isoform 1 of Basigin OS=Sus scrofa OX=9823 GN=BSG PE=1 SV=2 CANONICAL=A0A5G2QGZ8-1" }, "locus": { "chromosome": "2", "start_pos": 77738564, "end_pos": 77736434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081759.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081759.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063594.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063594.2" } ] } }, { "isoform_ac": "A0A5G2QW86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW86/entry", "sequence": { "sequence": "MGTSSQWPGFFPFHLIFGCPGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDDEDTGSAPL", "length": 247, "header": "tr|A0A5G2QW86-1|A0A5G2QW86_PIG Computationally mapped isoform of Basigin OS=Sus scrofa OX=9823 GN=BSG PE=1 SV=2 CANONICAL=A0A5G2QGZ8-1" }, "locus": { "chromosome": "2", "start_pos": 77738564, "end_pos": 77736648, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087008.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087008.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062444.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062444.2" } ] } }, { "isoform_ac": "A0A5G2RDX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX9/entry", "sequence": { "sequence": "MGTSSQWPGFFPFHLIFGCPGSRIWTSIDDVGSKTRLTCALNHSATEIAGHRWEKGGKVLKEDALPDLRTEFEVDSDDRSGQYSCIFLPEHAGRTDLEVKGPPNVKAVKKSEHATEGETVVLACKSDSFPPVTEWLWYKMSDSGDQVIANSSQNKFFVVSSETKTELHIPDLDLKEDPGKYACNGTSSEGTGQAVIVLRVRNRFAALWPFLGIVAEVLVLVTVIFIYEKRRKPDEVLDVGLLHGEVSCPDTPSCIPRKSSGHHVNDKGKNVRQRNAS", "length": 277, "header": "tr|A0A5G2RDX9-1|A0A5G2RDX9_PIG Computationally mapped isoform of Basigin OS=Sus scrofa OX=9823 GN=BSG PE=1 SV=1 CANONICAL=A0A5G2QGZ8-1" }, "locus": { "chromosome": "2", "start_pos": 77738564, "end_pos": 77736434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081400.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081400.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072720.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072720.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "D-mannose binding", "id": "GO:0005537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005537", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QGZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 298, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QGZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QGZ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGZ8" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 183, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 184, "end_pos": 186 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH11-1", "uniprot_ac": "A0A5G2QH11", "uniprot_id": "A0A5G2QH11_PIG", "mass": { "chemical_mass": 15271.0, "monoisotopic_mass": 15271.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Immunoglobulin V-set domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QH11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH11", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH11", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045274", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045274", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23268:SF111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23268:SF111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSWALCYMILCLLGAGESMDAEIYQMRFLLAGAGQDVTLECKQNLNHNAMYWYRQDPGQGLRLIYYSTVEKGVQRGDVAEGYSASREEKGLFLLTVRLATQTKQLCTSVPVAPQWSVATAHLCINLLQPCSPMTASI", "length": 138, "header": "tr|A0A5G2QH11-1|A0A5G2QH11_PIG Isoform 1 of Immunoglobulin V-set domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH11-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11/entry", "sequence": { "sequence": "MGSWALCYMILCLLGAGESMDAEIYQMRFLLAGAGQDVTLECKQNLNHNAMYWYRQDPGQGLRLIYYSTVEKGVQRGDVAEGYSASREEKGLFLLTVRLATQTKQLCTSVPVAPQWSVATAHLCINLLQPCSPMTASI", "length": 138, "header": "tr|A0A5G2QH11-1|A0A5G2QH11_PIG Isoform 1 of Immunoglobulin V-set domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH11-1" }, "locus": { "chromosome": "18", "start_pos": 7504424, "end_pos": 7503885, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085384.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085384.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064068.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064068.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 138, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH11-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH11" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH11" }, { "id": "PF07686", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin V-set", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 98, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH26-1", "uniprot_ac": "A0A5G2QH26", "uniprot_id": "A0A5G2QH26_PIG", "mass": { "chemical_mass": 21481.0, "monoisotopic_mass": 21481.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH26", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH26", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041004", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041004", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKTLNKVGIEGTYLNIIKVIYNKPTANIILNGEKLKVFPLKSRTRQVCPLSPLLFNIVLEVLATAIRQTKEIKGIQIGREEVKLSLYADDMILCIENPKDSTQKLLELINKFSKVAGYKIFFLGYKINMQKSVAFLYANNEIVETEFKNTIPFKIAHTKIKYLGINLTKEMRDLHAENYKTLIKEI", "length": 187, "header": "tr|A0A5G2QH26-1|A0A5G2QH26_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH26-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26/entry", "sequence": { "sequence": "MIKTLNKVGIEGTYLNIIKVIYNKPTANIILNGEKLKVFPLKSRTRQVCPLSPLLFNIVLEVLATAIRQTKEIKGIQIGREEVKLSLYADDMILCIENPKDSTQKLLELINKFSKVAGYKIFFLGYKINMQKSVAFLYANNEIVETEFKNTIPFKIAHTKIKYLGINLTKEMRDLHAENYKTLIKEI", "length": 187, "header": "tr|A0A5G2QH26-1|A0A5G2QH26_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH26-1" }, "locus": { "chromosome": "4", "start_pos": 38021986, "end_pos": 38021426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078839.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078839.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064083.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064083.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH26-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH26-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH26" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH26" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 168, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH36-1", "uniprot_ac": "A0A5G2QH36", "uniprot_id": "A0A5G2QH36_PIG", "mass": { "chemical_mass": 12707.0, "monoisotopic_mass": 12707.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH36", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH36", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042175", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042175", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSCGSSMYRFLRYLQTILHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLLRSFAHFSID", "length": 112, "header": "tr|A0A5G2QH36-1|A0A5G2QH36_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QH36-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36/entry", "sequence": { "sequence": "MPKSGIAGSCGSSMYRFLRYLQTILHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLLRSFAHFSID", "length": 112, "header": "tr|A0A5G2QH36-1|A0A5G2QH36_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QH36-1" }, "locus": { "chromosome": "8", "start_pos": 56556981, "end_pos": 56556646, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073773.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073773.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063639.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063639.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH36-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH36-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH36" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH38-1", "uniprot_ac": "A0A5G2QH38", "uniprot_id": "A0A5G2QH38_PIG", "mass": { "chemical_mass": 9660.0, "monoisotopic_mass": 9660.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH38", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048573", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048573", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LNALSASLKRKGTQGFGKEPREPSTGDTSLMLLLSLRHVRISLPWGTFHESDRILLLALESQIWNQEHTCPDAGSPSLRSQGLQECF", "length": 87, "header": "tr|A0A5G2QH38-1|A0A5G2QH38_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH38-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38/entry", "sequence": { "sequence": "LNALSASLKRKGTQGFGKEPREPSTGDTSLMLLLSLRHVRISLPWGTFHESDRILLLALESQIWNQEHTCPDAGSPSLRSQGLQECF", "length": 87, "header": "tr|A0A5G2QH38-1|A0A5G2QH38_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH38-1" }, "locus": { "chromosome": "7", "start_pos": 113279556, "end_pos": 113278990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078917.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078917.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061328.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061328.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 87, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH38" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH40-1", "uniprot_ac": "A0A5G2QH40", "uniprot_id": "A0A5G2QH40_PIG", "mass": { "chemical_mass": 21567.0, "monoisotopic_mass": 21567.0 }, "refseq": {}, "gene_names": [ { "name": "TMPRSS5", "type": "recommended", "evidence": [ { "id": "A0A5G2QH40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ] } ], "protein_names": [ { "name": "Transmembrane protease serine 5", "type": "recommended", "evidence": [ { "id": "A0A5G2QH40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40/entry#names_and_taxonomy" } ] }, { "name": "Spinesin", "type": "synonym", "evidence": [ { "id": "A0A5G2QH40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in hearing.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40#function" }, { "database": "UniProtKB", "id": "ARBA00056576", "url": "https://www.uniprot.org/uniprotkb/ARBA00056576#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMPRSS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH40", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH40", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015049", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015049", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TA54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TA54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TA54-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TA54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "THSFRLSRLSSWRVHVGLVSHSTVRPHQGAVVERIIAHPLYSAQNHDYDLALLQLRTPLHFSDTVGAVCLPTEEQAFPRGSQCWVSGWGHTDPSHTHSSDTLQDTVVPLLSTQLCNSSCVYSGALTPRMLCAGYLDGRADACQGDSGGPLVCLDGDTWRLVGVVSWGHGCAEPNHPGVYSKVAEFLDWIQDTAQNSLH", "length": 198, "header": "tr|A0A5G2QH40-1|A0A5G2QH40_PIG Isoform 1 of Transmembrane protease serine 5 OS=Sus scrofa OX=9823 GN=TMPRSS5 PE=4 SV=1 CANONICAL=A0A5G2QH40-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TA54-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TA54/entry", "sequence": { "sequence": "THSFRLSRLSSWRVHVGLVSHSTVRPHQGAVVERIIAHPLYSAQNHDYDLALLQLRTPLHFSDTVGAVCLPTEEQAFPRGSQCWVSGWGHTDPSHTHSSDTLQDTVVPLLSTQLCNSSCVYSGALTPRMLCAGYLDGRADACQNSLH", "length": 147, "header": "tr|A0A4X1TA54-1|A0A4X1TA54_PIG Computationally mapped isoform of Transmembrane serine protease 5 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH40-1" }, "locus": { "chromosome": "9", "start_pos": 41331700, "end_pos": 41326871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016415.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016415.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015974.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015974.4" } ] } }, { "isoform_ac": "A0A5G2QH40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40/entry", "sequence": { "sequence": "THSFRLSRLSSWRVHVGLVSHSTVRPHQGAVVERIIAHPLYSAQNHDYDLALLQLRTPLHFSDTVGAVCLPTEEQAFPRGSQCWVSGWGHTDPSHTHSSDTLQDTVVPLLSTQLCNSSCVYSGALTPRMLCAGYLDGRADACQGDSGGPLVCLDGDTWRLVGVVSWGHGCAEPNHPGVYSKVAEFLDWIQDTAQNSLH", "length": 198, "header": "tr|A0A5G2QH40-1|A0A5G2QH40_PIG Isoform 1 of Transmembrane protease serine 5 OS=Sus scrofa OX=9823 GN=TMPRSS5 PE=4 SV=1 CANONICAL=A0A5G2QH40-1" }, "locus": { "chromosome": "9", "start_pos": 41331700, "end_pos": 41326871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071145.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071145.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063644.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063644.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH40-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 198, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH40-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH40" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH40" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 194, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH44-1", "uniprot_ac": "A0A5G2QH44", "uniprot_id": "A0A5G2QH44_PIG", "mass": { "chemical_mass": 21948.0, "monoisotopic_mass": 21948.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH44", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH44", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041686", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041686", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH44-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMWVRVCFSRKVLSRYVPKNGIPRSYGSSMSSFLRYLHTVLHSCCTSLHSHQQCGRVPFSPHPLQHLLFVDLLMMAILTGGRWYLMVVLICISLIIRDVEHFVMCLLAICISSLEKCLFRSFAHFSRRLLDFLLLSCVSCLYILEIKPLSVASFETTFSHSVSCLFVVVFFFISFAVQKACQFDEVLLES", "length": 191, "header": "tr|A0A5G2QH44-1|A0A5G2QH44_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH44-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH44-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44/entry", "sequence": { "sequence": "MNMWVRVCFSRKVLSRYVPKNGIPRSYGSSMSSFLRYLHTVLHSCCTSLHSHQQCGRVPFSPHPLQHLLFVDLLMMAILTGGRWYLMVVLICISLIIRDVEHFVMCLLAICISSLEKCLFRSFAHFSRRLLDFLLLSCVSCLYILEIKPLSVASFETTFSHSVSCLFVVVFFFISFAVQKACQFDEVLLES", "length": 191, "header": "tr|A0A5G2QH44-1|A0A5G2QH44_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH44-1" }, "locus": { "chromosome": "14", "start_pos": 62466946, "end_pos": 62466422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080731.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080731.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063649.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063649.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH44" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH44-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 191, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH44-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH44" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH45-1", "uniprot_ac": "A0A5G2QH45", "uniprot_id": "A0A5G2QH45_PIG", "mass": { "chemical_mass": 14047.0, "monoisotopic_mass": 14047.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH45", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH45", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046740", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046740", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSIFSFLRNLHTVFDSGCTSLQSHQQCNRVPFSPHPLQPLLFVDFWMMAILAGVRWYLIVVLICISLIMSDVEHLFMCLLAICMSSSENCLFRSAYFLMGLFVFLVWSGRRCL", "length": 124, "header": "tr|A0A5G2QH45-1|A0A5G2QH45_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH45-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45/entry", "sequence": { "sequence": "MPRSGIAGSNGSSIFSFLRNLHTVFDSGCTSLQSHQQCNRVPFSPHPLQPLLFVDFWMMAILAGVRWYLIVVLICISLIMSDVEHLFMCLLAICMSSSENCLFRSAYFLMGLFVFLVWSGRRCL", "length": 124, "header": "tr|A0A5G2QH45-1|A0A5G2QH45_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH45-1" }, "locus": { "chromosome": "17", "start_pos": 13929346, "end_pos": 13928975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090596.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090596.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063144.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063144.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH45-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH45-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH45" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH47-1", "uniprot_ac": "A0A5G2QH47", "uniprot_id": "A0A5G2QH47_PIG", "mass": { "chemical_mass": 12803.0, "monoisotopic_mass": 12803.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH47", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH47", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041922", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041922", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QH47-1|A0A5G2QH47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH47-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QH47-1|A0A5G2QH47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH47-1" }, "locus": { "chromosome": "1", "start_pos": 130958283, "end_pos": 130957948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094001.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094001.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080800.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080800.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH47" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH47-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH47-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH47" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH50-1", "uniprot_ac": "A0A5G2QH50", "uniprot_id": "A0A5G2QH50_PIG", "mass": { "chemical_mass": 12002.0, "monoisotopic_mass": 12002.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Annexin-2 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2QH50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH50", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH50", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050190", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050190", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR38820", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38820", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38820:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38820:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQTVPRCVREPWDSAEDSQEPEALQILSSGDPGGWRLPLYPSLGQLSWDDQDVSRELLSTPCGLLRPFCPKHGPRAQSACRPSAEPLAPHTPTTPGTRRQHLSGFPSM", "length": 109, "header": "tr|A0A5G2QH50-1|A0A5G2QH50_PIG Isoform 1 of Annexin-2 receptor OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH50-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50/entry", "sequence": { "sequence": "MEQTVPRCVREPWDSAEDSQEPEALQILSSGDPGGWRLPLYPSLGQLSWDDQDVSRELLSTPCGLLRPFCPKHGPRAQSACRPSAEPLAPHTPTTPGTRRQHLSGFPSM", "length": 109, "header": "tr|A0A5G2QH50-1|A0A5G2QH50_PIG Isoform 1 of Annexin-2 receptor OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH50-1" }, "locus": { "chromosome": "16", "start_pos": 27695220, "end_pos": 27694593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089825.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089825.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063149.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063149.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 109, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH50" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH53-1", "uniprot_ac": "A0A5G2QH53", "uniprot_id": "A0A5G2QH53_PIG", "mass": { "chemical_mass": 10544.0, "monoisotopic_mass": 10544.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "F-box domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QH53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH53", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH53", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041376", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041376", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VATALGLNQLPSELLLMVLSQVPPRMLIRHCRQVCRRWRALVDCQDLTHLDLSSHPQRGLIWKRPGWILTQSSWARHRVPQFPHLYKTES", "length": 90, "header": "tr|A0A5G2QH53-1|A0A5G2QH53_PIG Isoform 1 of F-box domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH53-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53/entry", "sequence": { "sequence": "VATALGLNQLPSELLLMVLSQVPPRMLIRHCRQVCRRWRALVDCQDLTHLDLSSHPQRGLIWKRPGWILTQSSWARHRVPQFPHLYKTES", "length": 90, "header": "tr|A0A5G2QH53-1|A0A5G2QH53_PIG Isoform 1 of F-box domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH53-1" }, "locus": { "chromosome": "10", "start_pos": 11862282, "end_pos": 11860026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086083.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086083.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063659.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063659.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 90, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH53" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH53" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 52, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q8A7-1", "uniprot_ac": "A0A5G2Q8A7", "uniprot_id": "A0A5G2Q8A7_PIG", "mass": { "chemical_mass": 44012.0, "monoisotopic_mass": 44012.0 }, "refseq": {}, "gene_names": [ { "name": "LMCD1", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ] } ], "protein_names": [ { "name": "LIM and cysteine-rich domains protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2Q8A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcriptional cofactor that restricts GATA6 function by inhibiting DNA-binding, resulting in repression of GATA6 transcriptional activation of downstream target genes. Represses GATA6-mediated trans activation of lung- and cardiac tissue-specific promoters. Inhibits DNA-binding by GATA4 and GATA1 to the cTNC promoter. Plays a critical role in the development of cardiac hypertrophy via activation of calcineurin/nuclear factor of activated T-cells signaling pathway.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX1#function" }, { "database": "UniProtKB", "id": "ARBA00054580", "url": "https://www.uniprot.org/uniprotkb/ARBA00054580#function" }, { "database": "UniProtKB", "id": "A0A5G2R4Z6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Z6#function" }, { "database": "UniProtKB", "id": "A0A4X1V1H5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1H5#function" }, { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMCD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7", "locus": { "chromosome": "13", "start_pos": 64994228, "end_pos": 64933700, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011538", "url": "https://www.ensembl.org/id/ENSSSCG00000011538" } ] } } ], "crossref": [ { "id": "A0A5G2Q8A7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8A7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011538", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011538", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09340", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09340", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09829", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09829", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24211", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24211", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24211:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24211:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V1H5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V1H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4Z6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FND9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FND9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FND9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FND9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKVAKDLNPGVQKGHTMAYEDFQARSLIRAVARAYTRATAMPDMSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVCELCKGVAPADSPVVYSDRAGYSKQWHPACFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEDLAWHRKHFVCEGCEQQLGGRAYIITKGQLLCPTCSKSKRT", "length": 393, "header": "tr|A0A5G2Q8A7-1|A0A5G2Q8A7_PIG Isoform 1 of LIM and cysteine-rich domains protein 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=1 CANONICAL=A0A5G2Q8A7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V1H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1H5/entry", "sequence": { "sequence": "MSEMQGDVFGLRATFVEGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVCELCKGVAPADSPVVYSDRAGYSKQWHPACFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEDLAWHRKHFVCEGCEQQLGGRAYIITKGQLLCPTCSKSKRT", "length": 251, "header": "tr|A0A4X1V1H5-1|A0A5G2Q8A7_PIG Computationally mapped isoform of LIM and cysteine-rich domains protein 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=2 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64993716, "end_pos": 64967063, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088289.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088289.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061510.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061510.1" } ] } }, { "isoform_ac": "A0A5G2Q8A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7/entry", "sequence": { "sequence": "MAKVAKDLNPGVQKGHTMAYEDFQARSLIRAVARAYTRATAMPDMSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVCELCKGVAPADSPVVYSDRAGYSKQWHPACFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEDLAWHRKHFVCEGCEQQLGGRAYIITKGQLLCPTCSKSKRT", "length": 393, "header": "tr|A0A5G2Q8A7-1|A0A5G2Q8A7_PIG Isoform 1 of LIM and cysteine-rich domains protein 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=1 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64993716, "end_pos": 64933813, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071771.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071771.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060420.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060420.1" } ] } }, { "isoform_ac": "A0A5G2QVD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD0/entry", "sequence": { "sequence": "MAKVAKDLNPGVQKMSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVSLPQPSASASGLAEAAWAGLQGQGPSCRLCSLIHVLVHGHGPVPQPNCGSSEKGHLTMLRGKGRLGGGAEAQAGLGRITRNHPGL", "length": 325, "header": "tr|A0A5G2QVD0-1|A0A5G2QVD0_PIG Computationally mapped isoform of LIM and cysteine rich domains 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=2 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64980349, "end_pos": 64933813, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078504.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078504.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068928.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068928.2" } ] } }, { "isoform_ac": "A0A5G2QVX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX1/entry", "sequence": { "sequence": "MSFMMYPSAWYIADMSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVCELCKGVAPADSPVVYSDRAGYSKQWHPACFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEDLAWHRKHFVCEGCEQQLGGRAYIITKGQLLCPTCSKSKRT", "length": 363, "header": "tr|A0A5G2QVX1-1|A0A5G2QVX1_PIG Computationally mapped isoform of LIM and cysteine-rich domains protein 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=2 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64993716, "end_pos": 64966045, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084381.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084381.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068295.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068295.2" } ] } }, { "isoform_ac": "A0A5G2R4Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Z6/entry", "sequence": { "sequence": "MSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVCELCKGVAPADSPVVYSDRAGYSKQWHPACFVCAKCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFSEDYQRVEDLAWHRKHFVCEGCEQQLGGRAYIITKGQLLCPTCSKSKRT", "length": 349, "header": "tr|A0A5G2R4Z6-1|A0A5G2R4Z6_PIG Computationally mapped isoform of LIM and cysteine-rich domains protein 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=2 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64993716, "end_pos": 64967025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080959.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080959.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072156.2" } ] } }, { "isoform_ac": "A0A8W4FND9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FND9/entry", "sequence": { "sequence": "GLFISGPLNPMSLGQQQSARGVPCLRCKGTCSGFEPHSWRKICKSCKCSQEDHFLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLMHQLPIYDQDPSRCRGLLESELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTANGSLGDPSKEYVSLPQPSASASGLAEAAWAGLQGQGPSCRLCSLIHVLVHGHGPVPQPNCGSSEKGHLTMLRGKGRLGGGAEAQAGLGRITRNHPGL", "length": 321, "header": "tr|A0A8W4FND9-1|A0A8W4FND9_PIG Computationally mapped isoform of LIM and cysteine rich domains 1 OS=Sus scrofa OX=9823 GN=LMCD1 PE=4 SV=1 CANONICAL=A0A5G2Q8A7-1" }, "locus": { "chromosome": "13", "start_pos": 64980349, "end_pos": 64966895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094676.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094676.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080864.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080864.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V1H5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V1H5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" }, { "name": "regulation of cardiac muscle hypertrophy", "id": "GO:0010611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010611", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" }, { "name": "positive regulation of calcineurin-NFAT signaling cascade", "id": "GO:0070886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q8A7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 393, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q8A7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q8A7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q8A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 269, "end_pos": 334, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q8A7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8A7" }, { "id": "PS51303", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51303" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PET", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 236, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 259, "end_pos": 261 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QC91-1", "uniprot_ac": "A0A5G2QC91", "uniprot_id": "A0A5G2QC91_PIG", "mass": { "chemical_mass": 24711.0, "monoisotopic_mass": 24711.0 }, "refseq": {}, "gene_names": [ { "name": "FGF8", "type": "recommended", "evidence": [ { "id": "A0A5G2QC91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ] } ], "protein_names": [ { "name": "Fibroblast growth factor", "type": "recommended", "evidence": [ { "id": "A0A5G2QC91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91/entry#names_and_taxonomy" } ] }, { "name": "FGF", "type": "synonym", "evidence": [ { "id": "A0A5G2QC91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91", "locus": { "chromosome": "14", "start_pos": 112808162, "end_pos": 112814248, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036146", "url": "https://www.ensembl.org/id/ENSSSCG00000036146" } ] } } ], "crossref": [ { "id": "A0A5G2QC91", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC91", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036146", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036146", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23322", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23322", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11486", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11486", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-109704", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1257604", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-190322", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190322", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-190373", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190373", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654219", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654219", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654687", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654687", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654688", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654688", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654693", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654693", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654712", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654719", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654719", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654726", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654726", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC91-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7G2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5URC6", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5URC6-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSPRSALSCLLLHLLVLCLQAQVTVQSSPNFTQHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR", "length": 215, "header": "tr|A0A5G2QC91-1|A0A5G2QC91_PIG Isoform 1 of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF8 PE=3 SV=1 CANONICAL=A0A5G2QC91-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC91-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91/entry", "sequence": { "sequence": "MGSPRSALSCLLLHLLVLCLQAQVTVQSSPNFTQHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR", "length": 215, "header": "tr|A0A5G2QC91-1|A0A5G2QC91_PIG Isoform 1 of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF8 PE=3 SV=1 CANONICAL=A0A5G2QC91-1" }, "locus": { "chromosome": "14", "start_pos": 112814049, "end_pos": 112808399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069658.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069658.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062179.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062179.1" } ] } }, { "isoform_ac": "A0A5G2R7G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7G2/entry", "sequence": { "sequence": "MGSPRSALSCLLLHLLVLCLQAQEGPGGGPALGRELASLFRAGRESQGVSQQVTVQSSPNFTQHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR", "length": 244, "header": "tr|A0A5G2R7G2-1|A0A5G2R7G2_PIG Computationally mapped isoform of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF8 PE=3 SV=1 CANONICAL=A0A5G2QC91-1" }, "locus": { "chromosome": "14", "start_pos": 112814049, "end_pos": 112808399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071754.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071754.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066541.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066541.1" } ] } }, { "isoform_ac": "A0ABB5URC6-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC6/entry", "sequence": { "sequence": "MGSPRSALSCLLLHLLVLCLQAQHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR", "length": 204, "header": "tr|A0ABB5URC6-1|A0ABB5URC6_PIG Computationally mapped isoform of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF8 PE=3 SV=1 CANONICAL=A0A5G2QC91-1" }, "locus": { "chromosome": "14", "start_pos": 112814049, "end_pos": 112808399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107133.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107133.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081527.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081527.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-109704", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "resource": "Reactome", "description": "PI3K Cascade" }, { "id": "R-SSC-1257604", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "resource": "Reactome", "description": "PIP3 activates AKT signaling" }, { "id": "R-SSC-190322", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190322", "resource": "Reactome", "description": "FGFR4 ligand binding and activation" }, { "id": "R-SSC-190373", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190373", "resource": "Reactome", "description": "FGFR1c ligand binding and activation" }, { "id": "R-SSC-5654219", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654219", "resource": "Reactome", "description": "Phospholipase C-mediated cascade: FGFR1" }, { "id": "R-SSC-5654228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654228", "resource": "Reactome", "description": "Phospholipase C-mediated cascade; FGFR4" }, { "id": "R-SSC-5654687", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654687", "resource": "Reactome", "description": "Downstream signaling of activated FGFR1" }, { "id": "R-SSC-5654688", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654688", "resource": "Reactome", "description": "SHC-mediated cascade:FGFR1" }, { "id": "R-SSC-5654689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654689", "resource": "Reactome", "description": "PI-3K cascade:FGFR1" }, { "id": "R-SSC-5654693", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654693", "resource": "Reactome", "description": "FRS-mediated FGFR1 signaling" }, { "id": "R-SSC-5654712", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "resource": "Reactome", "description": "FRS-mediated FGFR4 signaling" }, { "id": "R-SSC-5654719", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654719", "resource": "Reactome", "description": "SHC-mediated cascade:FGFR4" }, { "id": "R-SSC-5654720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "resource": "Reactome", "description": "PI-3K cascade:FGFR4" }, { "id": "R-SSC-5654726", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654726", "resource": "Reactome", "description": "Negative regulation of FGFR1 signaling" }, { "id": "R-SSC-5654733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "resource": "Reactome", "description": "Negative regulation of FGFR4 signaling" }, { "id": "R-SSC-5658623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658623", "resource": "Reactome", "description": "FGFRL1 modulation of FGFR1 signaling" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" }, { "id": "R-SSC-6811558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "resource": "Reactome", "description": "PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "type 1 fibroblast growth factor receptor binding", "id": "GO:0005105", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005105", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "type 2 fibroblast growth factor receptor binding", "id": "GO:0005111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005111", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "positive regulation of MAPK cascade", "id": "GO:0043410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "neuroepithelial cell differentiation", "id": "GO:0060563", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060563", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "odontogenesis", "id": "GO:0042476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042476", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "bone development", "id": "GO:0060348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060348", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "dorsal/ventral pattern formation", "id": "GO:0009953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009953", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "metanephros development", "id": "GO:0001656", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001656", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "negative regulation of cardiac muscle tissue development", "id": "GO:0055026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055026", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "mesonephros development", "id": "GO:0001823", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001823", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "outflow tract septum morphogenesis", "id": "GO:0003148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003148", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "gonad development", "id": "GO:0008406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008406", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "fibroblast growth factor receptor signaling pathway", "id": "GO:0008543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008543", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" }, { "name": "dopaminergic neuron differentiation", "id": "GO:0071542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071542", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QC91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 215, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QC91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QC91" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q732-1", "uniprot_ac": "A0A5G2Q732", "uniprot_id": "A0A5G2Q732_PIG", "mass": { "chemical_mass": 56346.0, "monoisotopic_mass": 56346.0 }, "refseq": {}, "gene_names": [ { "name": "CACNB4", "type": "recommended", "evidence": [ { "id": "A0A5G2Q732", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ] } ], "protein_names": [ { "name": "Voltage-dependent L-type calcium channel subunit beta-4", "type": "recommended", "evidence": [ { "id": "A0A5G2Q732", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732/entry#names_and_taxonomy" } ] }, { "name": "Calcium channel voltage-dependent subunit beta 4", "type": "synonym", "evidence": [ { "id": "A0A5G2Q732", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents. Increases CACNA1B peak calcium current and shifts the voltage dependencies of channel activation and inactivation. Increases CACNA1C peak calcium current and shifts the voltage dependencies of channel activation and inactivation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHX5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHX5#function" }, { "database": "UniProtKB", "id": "ARBA00045432", "url": "https://www.uniprot.org/uniprotkb/ARBA00045432#function" } ] }, { "annotation": "The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHX5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHX5#function" }, { "database": "UniProtKB", "id": "ARBA00002749", "url": "https://www.uniprot.org/uniprotkb/ARBA00002749#function" }, { "database": "UniProtKB", "id": "A0A287AHB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AHB4#function" }, { "database": "UniProtKB", "id": "A0A287AHZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHZ5#function" }, { "database": "UniProtKB", "id": "A0A287AJJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJJ7#function" }, { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CACNB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732", "locus": { "chromosome": "15", "start_pos": 459856, "end_pos": 186434, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029073", "url": "https://www.ensembl.org/id/ENSSSCG00000029073" } ] } } ], "crossref": [ { "id": "A0A5G2Q732", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q732", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029073", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029073", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12043", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12043", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112308", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112308", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AHB4", "url": "https://www.uniprot.org/uniprotkb/A0A287AHB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHZ5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287AJJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q732-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8J4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGX8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHX5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMA5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5D3", "url": "https://www.uniprot.org/uniprotkb/I3L5D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5D3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5D3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 502, "header": "tr|A0A5G2Q732-1|A0A5G2Q732_PIG Isoform 1 of Voltage-dependent L-type calcium channel subunit beta-4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=2 CANONICAL=A0A5G2Q732-1" }, "isoforms": [ { "isoform_ac": "A0A287AHB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHB4/entry", "sequence": { "sequence": "MSSSYAKNGTADGQRSPTSQVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 519, "header": "tr|A0A287AHB4-1|A0A287AHB4_PIG Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=2 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 186633, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047147.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047147.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043421.2" } ] } }, { "isoform_ac": "A0A287AHZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHZ5/entry", "sequence": { "sequence": "MGFPSQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 464, "header": "tr|A0A287AHZ5-1|A0A287AHZ5_PIG Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=3 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 402786, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052162.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052162.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043489.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043489.2" } ] } }, { "isoform_ac": "A0A287AJJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJJ7/entry", "sequence": { "sequence": "MPMGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 474, "header": "tr|A0A287AJJ7-1|A0A287AJJ7_PIG Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=2 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 311871, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051892.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051892.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044066.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044066.2" } ] } }, { "isoform_ac": "A0A5G2Q732-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732/entry", "sequence": { "sequence": "MDVVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 502, "header": "tr|A0A5G2Q732-1|A0A5G2Q732_PIG Isoform 1 of Voltage-dependent L-type calcium channel subunit beta-4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=2 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 186958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081529.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081529.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059848.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059848.2" } ] } }, { "isoform_ac": "A0A5G2Q8J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8J4/entry", "sequence": { "sequence": "MSSSYAKNGTADGQRSPTSQVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 478, "header": "tr|A0A5G2Q8J4-1|A0A5G2Q8J4_PIG Computationally mapped isoform of Calcium voltage-gated channel auxiliary subunit beta 4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=1 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 186633, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073925.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073925.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060206.1" } ] } }, { "isoform_ac": "A0A8W4FGX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGX8/entry", "sequence": { "sequence": "MAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 411, "header": "tr|A0A8W4FGX8-1|A0A8W4FGX8_PIG Computationally mapped isoform of Calcium voltage-gated channel auxiliary subunit beta 4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=1 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 311885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096713.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096713.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077565.1" } ] } }, { "isoform_ac": "A0A8W4FHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHX5/entry", "sequence": { "sequence": "MYDNLYLHGIEDSEAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 486, "header": "tr|A0A8W4FHX5-1|A0A8W4FHX5_PIG Computationally mapped isoform of Voltage-dependent L-type calcium channel subunit beta-3 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=1 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 309765, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097230.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097230.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077913.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077913.1" } ] } }, { "isoform_ac": "A0A8W4FMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMA5/entry", "sequence": { "sequence": "MAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 441, "header": "tr|A0A8W4FMA5-1|A0A8W4FMA5_PIG Computationally mapped isoform of Calcium voltage-gated channel auxiliary subunit beta 4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=1 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 311885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102012.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102012.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079439.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079439.1" } ] } }, { "isoform_ac": "I3L5D3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5D3/entry", "sequence": { "sequence": "MAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTSTDGAHPPLRCCAIDASSGVSGAVTEGLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTASSTPMTPLLGRNLGSTALSPYPTAISGLQSQRMRHGNHSTENSPIERRSLMTADENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGYSHDSRHRL", "length": 409, "header": "tr|I3L5D3-1|I3L5D3_PIG Computationally mapped isoform of Calcium voltage-gated channel auxiliary subunit beta 4 OS=Sus scrofa OX=9823 GN=CACNB4 PE=3 SV=3 CANONICAL=A0A5G2Q732-1" }, "locus": { "chromosome": "15", "start_pos": 455556, "end_pos": 311885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023642.3", "url": "https://www.ensembl.org/id/ENSSSCT00000023642.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019232.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019232.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-112308", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112308", "resource": "Reactome", "description": "Presynaptic depolarization and calcium channel opening" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "voltage-gated calcium channel complex", "id": "GO:0005891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005891", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels", "id": "GO:0099626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099626", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "high voltage-gated calcium channel activity", "id": "GO:0008331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008331", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "calcium ion transport", "id": "GO:0006816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006816", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle exocytosis", "id": "GO:2000300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000300", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q732", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q732-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 502, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q732-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q732" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q732", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q732" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 143, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD49-1", "uniprot_ac": "A0A5G2QD49", "uniprot_id": "A0A5G2QD49_PIG", "mass": { "chemical_mass": 28578.0, "monoisotopic_mass": 28578.0 }, "refseq": {}, "gene_names": [ { "name": "SLC47A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QD49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ] } ], "protein_names": [ { "name": "Solute carrier family 47 member 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QD49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC47A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49", "locus": { "chromosome": "12", "start_pos": 60021188, "end_pos": 60056938, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033329", "url": "https://www.ensembl.org/id/ENSSSCG00000033329" } ] } } ], "crossref": [ { "id": "A0A5G2QD49", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033329", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033329", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13132", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13132", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WFFVWKL", "url": "https://omabrowser.org/oma/group/WFFVWKL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BPI3", "url": "https://www.orthodb.org/?gene=A0A287BPI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-549127", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BPI3", "url": "https://www.uniprot.org/uniprotkb/A0A287BPI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAAEETSAPGQGGPAPGPERRALCSLPSAALRRELRALLFLAGPAFLAQLMVFLISFVSSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLTQSYVTTFIPALPAQVHANLKLNVAQDGTAVLSREPPYPVGPENLGGVLLRDVAKKEATPLGQQPPQEEHVEVHPRAEPTLSGRQLLLRRGLLLLGAVSLLLVGILVRVCVRIQ", "length": 268, "header": "tr|A0A5G2QD49-1|A0A5G2QD49_PIG Isoform 1 of Solute carrier family 47 member 1 OS=Sus scrofa OX=9823 GN=SLC47A1 PE=3 SV=1 CANONICAL=A0A5G2QD49-1" }, "isoforms": [ { "isoform_ac": "A0A287BPI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPI3/entry", "sequence": { "sequence": "MEAAEETSAPGQGGPAPGPERRALCSLPSAALRRELRALLFLAGPAFLAQLMVFLISFVSSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLTQSYVTTFIPALPATFLYTLQVKYLLNQGIVLPQIVTGVVANLVNALANYLFLYPLHLGVMGSALANTVSQFALALLLFLYIVVKKLHRDTWGGWSWECLQDWASFFSLAVPSMLMLCIEWWAYEIGSFLSGTLGMVELGAQSVVYELAVIVYMVPTGFSVAASVQVGNALGAGNIEQARRSSVVALVVTELFAVTFCVLLLSCKDLVGYVFTKDREIIALVAQVVPIYAVSHLFEGLACTCGGVLRGSGNQRVGAIVNTIGYYVVGLPIGISLMFATGLGVVGLWLGIIICTISQAVCFLGFIARLNWKTACQQAQVHANLKLNVAQDGTAVLSREPPYPVGPENLGGVLLRDVAKKEATPLGQQPPQEEHVEVHPRAEPTLSGRQLLLRRGLLLLGAVSLLLVGILVRVCVRIQ", "length": 570, "header": "tr|A0A287BPI3-1|A0A287BPI3_PIG Computationally mapped isoform of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=SLC47A1 PE=3 SV=1 CANONICAL=A0A5G2QD49-1" }, "locus": { "chromosome": "12", "start_pos": 60056927, "end_pos": 60021555, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037340.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037340.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058527.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058527.1" } ] } }, { "isoform_ac": "A0A5G2QD49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49/entry", "sequence": { "sequence": "MEAAEETSAPGQGGPAPGPERRALCSLPSAALRRELRALLFLAGPAFLAQLMVFLISFVSSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLTQSYVTTFIPALPAQVHANLKLNVAQDGTAVLSREPPYPVGPENLGGVLLRDVAKKEATPLGQQPPQEEHVEVHPRAEPTLSGRQLLLRRGLLLLGAVSLLLVGILVRVCVRIQ", "length": 268, "header": "tr|A0A5G2QD49-1|A0A5G2QD49_PIG Isoform 1 of Solute carrier family 47 member 1 OS=Sus scrofa OX=9823 GN=SLC47A1 PE=3 SV=1 CANONICAL=A0A5G2QD49-1" }, "locus": { "chromosome": "12", "start_pos": 60056927, "end_pos": 60021555, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071216.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071216.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061516.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061516.1" } ] } }, { "isoform_ac": "A0A5G2RLY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY7/entry", "sequence": { "sequence": "MEAAEETSAPGQGGPAPGPERRALCSLPSAALRRELRALLFLAGPAFLAQLMVFLISFVSSVFCGHLGKLELDAVTLAIATYGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLTQSYVTTFIPALPATFLYTLQVKYLLNQGIVLPQIVTGVVANLVNALANYLFLYPLHLGVMGSALANTVSQFALALLLFLYIVVKKLHRDTWGGWSWECLQDWASFFSLAVPSMLMLCIEWWAYEIGSFLSGTLGMVELGAQSVVYELAVIVYMVPTGFSVAASVQVGNALGAGNIEQARRSSVVALVVTELFAVTFCVLLLSCKDLVGYVFTKDREIIALVAQVVPIYAVSHLFEGLACTCGGVLRGSGNQRVGAIVNTIGYYVVGLPIGISLMFATGLGVVGSGPCQFETKRGPGRDRSSLEGATLPSGP", "length": 443, "header": "tr|A0A5G2RLY7-1|A0A5G2RLY7_PIG Computationally mapped isoform of Solute carrier family 47 member 1 OS=Sus scrofa OX=9823 GN=SLC47A1 PE=3 SV=1 CANONICAL=A0A5G2QD49-1" }, "locus": { "chromosome": "12", "start_pos": 60056927, "end_pos": 60021772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074501.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074501.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073459.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073459.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-549127", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "resource": "Reactome", "description": "SLC-mediated transport of organic cations" } ], "orthologs": [ { "uniprot_canonical_ac": "P38767-1", "protein_name": "Ethionine resistance-conferring protein 1", "gene_name": "ERC1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSKQFSHTTNDRRSSIIYSTSVGKAGLFTPADYIPQESEENLIEGEEQEGSEEEPSYTGNDDETEREGEYHSLLDANNSRTLQQEAWQQGYDSHDRKRLLDEERDLLIDNKLLSQHGNGGGDIESHGHGQAIGPDEEERPAEIANTWESAIESGQKISTTFKRETQVITMNALPLIFTFILQNSLSLASIFSVSHLGTKELGGVTLGSMTANITGLAAIQGLCTCLDTLCAQAYGAKNYHLVGVLVQRCAVITILAFLPMMYVWFVWSEKILALMIPERELCALAANYLRVTAFGVPGFILFECGKRFLQCQGIFHASTIVLFVCAPLNALMNYLLVWNDKIGIGYLGAPLSVVINYWLMTLGLLIYAMTTKHKERPLKCWNGIIPKEQAFKNWRKMINLAIPGVVMVEAEFLGFEVLTIFASHLGTDALGAQSIVATIASLAYQVPFSISVSTSTRVANFIGASLYDSCMITCRVSLLLSFVCSSMNMFVICRYKEQIASLFSTESAVVKMVVDTLPLLAFMQLFDAFNASTAGCLRGQGRQKNRWVHQPSRILLPRCAHGICVSIPVSSGCRRLMVGYN", "length": 581 }, "evidence": [ { "id": "A0A5G2QD49", "url": "https://omabrowser.org/oma/group/A0A5G2QD49/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5I0E9-1", "protein_name": "Multidrug and toxin extrusion protein 1", "gene_name": "Slc47a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVLEEPAPGPGGADAAERRGLRRLLLSGFQEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAIIVYMIPAGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIVALVAQVVPIYAVSHLFEALACTCGGVLRGTGNQKVGAIVNAIGYYVIGLPIGISLMFVAKLGVIGLWSGIIICSVCQTSCFLVFIARLNWKLACQQAQVHANLKVNVALNSAVSQEPAHPVGPESHGEIMMTDLEKKDEIQLDQQMNQQQALPVHPKDSNKLSGKQLALRRGLLFLGVVLVLVGGILVRVYIRTE", "length": 566 }, "evidence": [ { "id": "A0A5G2QD49", "url": "https://omabrowser.org/oma/group/A0A5G2QD49/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K0H1-1", "protein_name": "Multidrug and toxin extrusion protein 1", "gene_name": "Slc47a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERTEESAPGPGGADAASERRGLRCLLLPGFLEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSITYELAIIVYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIGLPIGIALMFAAKLGVIGLWSGIIICTTCQTTCFLAFIARLNWKRACQQAQVHANLKVNVALNSAVSHEPAHPVCPESHGEIMMTDLEKKDETQLDQPMNQQQALPIRPKDSNKLSGKQLALRRGLLLLGVVLVLVGGILVRVYIRIE", "length": 567 }, "evidence": [ { "id": "A0A5G2QD49", "url": "https://omabrowser.org/oma/group/A0A5G2QD49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96FL8-1", "protein_name": "Multidrug and toxin extrusion protein 1", "gene_name": "SLC47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAPEEPAPVRGGPEATLEVRGSRCLRLSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKKACQQAQVHANLKVNNVPRSGNSALPQDPLHPGCPENLEGILTNDVGKTGEPQSDQQMRQEEPLPEHPQDGAKLSRKQLVLRRGLLLLGVFLILLVGILVRFYVRIQ", "length": 570 }, "evidence": [ { "id": "A0A5G2QD49", "url": "https://omabrowser.org/oma/group/A0A5G2QD49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LUH2-1", "protein_name": "Protein DETOXIFICATION 19", "gene_name": "DTX19", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADPATSSPLLDDHVGGEDERGRRSRSSTLVQKVIDVEEAKAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNVATV", "length": 477 }, "evidence": [ { "id": "A0A5G2QD49", "url": "https://omabrowser.org/oma/group/A0A5G2QD49/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "xenobiotic transmembrane transporter activity", "id": "GO:0042910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042910", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "thiamine transmembrane transporter activity", "id": "GO:0015234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015234", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "putrescine transmembrane transporter activity", "id": "GO:0015489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015489", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "L-arginine transmembrane transporter activity", "id": "GO:0061459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061459", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "polyspecific organic cation:proton antiporter activity", "id": "GO:0140968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140968", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "antiporter activity", "id": "GO:0015297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015297", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "organic cation transport", "id": "GO:0015695", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015695", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "xenobiotic transmembrane transport", "id": "GO:0006855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "L-arginine import across plasma membrane", "id": "GO:0097638", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097638", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "xenobiotic detoxification by transmembrane export across the plasma membrane", "id": "GO:1990961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990961", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 268, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD49" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q848-1", "uniprot_ac": "A0A5G2Q848", "uniprot_id": "A0A5G2Q848_PIG", "mass": { "chemical_mass": 162485.0, "monoisotopic_mass": 162485.0 }, "refseq": {}, "gene_names": [ { "name": "COL11A2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q848", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ] } ], "protein_names": [ { "name": "Collagen alpha-2(XI) chain", "type": "recommended", "evidence": [ { "id": "A0A5G2Q848", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RA57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA57#function" }, { "database": "UniProtKB", "id": "ARBA00059117", "url": "https://www.uniprot.org/uniprotkb/ARBA00059117#function" }, { "database": "UniProtKB", "id": "K7GME7", "url": "https://www.uniprot.org/uniprotkb/K7GME7#function" }, { "database": "UniProtKB", "id": "K7GST7", "url": "https://www.uniprot.org/uniprotkb/K7GST7#function" }, { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848#function" }, { "database": "UniProtKB", "id": "F1S2C1", "url": "https://www.uniprot.org/uniprotkb/F1S2C1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL11A2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848", "locus": { "chromosome": "7", "start_pos": 25204491, "end_pos": 25234888, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001473", "url": "https://www.ensembl.org/id/ENSSSCG00000001473" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001473", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001473", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520915", "url": "https://www.ncbi.nlm.nih.gov/gene/100520915", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520915", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520915", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TCLYPSV", "url": "https://omabrowser.org/oma/group/TCLYPSV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2RA57", "url": "https://www.orthodb.org/?gene=A0A5G2RA57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S2C1", "url": "https://www.orthodb.org/?gene=F1S2C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GME7", "url": "https://www.orthodb.org/?gene=K7GME7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GST7", "url": "https://www.orthodb.org/?gene=K7GST7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1089", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1089", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000171", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000171", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q848-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPA8", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPA8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPB1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPB1-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQE3", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQE3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQL8", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQL8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2C1", "url": "https://www.uniprot.org/uniprotkb/F1S2C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2C1-1", "url": "https://www.uniprot.org/uniprotkb/F1S2C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GME7", "url": "https://www.uniprot.org/uniprotkb/K7GME7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GME7-1", "url": "https://www.uniprot.org/uniprotkb/K7GME7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GST7", "url": "https://www.uniprot.org/uniprotkb/K7GST7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GST7-1", "url": "https://www.uniprot.org/uniprotkb/K7GST7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQDPTPGGEEGILESSPLPPPEEAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1651, "header": "tr|A0A5G2Q848-1|A0A5G2Q848_PIG Isoform 1 of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=2 CANONICAL=A0A5G2Q848-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q848-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQDPTPGGEEGILESSPLPPPEEAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1651, "header": "tr|A0A5G2Q848-1|A0A5G2Q848_PIG Isoform 1 of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=2 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25205506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074418.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074418.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060339.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060339.2" } ] } }, { "isoform_ac": "A0A5G2RA57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA57/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1630, "header": "tr|A0A5G2RA57-1|A0A5G2RA57_PIG Computationally mapped isoform of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=1 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25205506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067613.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067613.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073199.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073199.1" } ] } }, { "isoform_ac": "A0ABB5UPA8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPA8/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEEGILESSPLPPPEEPTGS", "length": 317, "header": "tr|A0ABB5UPA8-1|A0ABB5UPA8_PIG Computationally mapped isoform of Collagen type XI alpha 2 chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=1 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25226839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107642.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107642.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082036.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082036.1" } ] } }, { "isoform_ac": "A0ABB5UPB1-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPB1/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEEGILESSPLPPPEEVPDRGIWGGWHRAPNRALRLHLWLWGRLS", "length": 342, "header": "tr|A0ABB5UPB1-1|A0ABB5UPB1_PIG Computationally mapped isoform of Collagen type XI alpha 2 chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=1 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25226757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107641.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107641.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082035.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082035.1" } ] } }, { "isoform_ac": "A0ABB5UQE3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQE3/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQDPTPGGEEGILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTEPPTGPYDYTYGYGDDYREETELGPALSAETAHSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGWTWFEGK", "length": 963, "header": "tr|A0ABB5UQE3-1|A0ABB5UQE3_PIG Computationally mapped isoform of Collagen type XI alpha 2 chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=1 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25214519, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107643.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107643.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082037.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082037.1" } ] } }, { "isoform_ac": "A0ABB5UQL8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQL8/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEEGILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTEPPTGPYDYTYGYGDDYREETELGPALSAETAHSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGPLGETRASGRTWPHGSTGSAGTPRRHWEVWSQGNIWW", "length": 860, "header": "tr|A0ABB5UQL8-1|A0ABB5UQL8_PIG Computationally mapped isoform of Collagen type XI alpha 2 chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=1 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25216083, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107644.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107644.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082038.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082038.1" } ] } }, { "isoform_ac": "F1S2C1-1", "url": "https://www.uniprot.org/uniprotkb/F1S2C1/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1656, "header": "tr|F1S2C1-1|F1S2C1_PIG Computationally mapped isoform of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=3 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25205506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001640.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001640.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001598.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001598.3" } ] } }, { "isoform_ac": "K7GME7-1", "url": "https://www.uniprot.org/uniprotkb/K7GME7/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEEGILESSPLPPPEEEQTDLQVPSTADRFLTEEYGEGGTEPPTGPYDYTYGYGDDYREETELGPALSAETAHSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1737, "header": "tr|K7GME7-1|K7GME7_PIG Computationally mapped isoform of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=2 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25205506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036382.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036382.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029039.2", "url": "https://www.ensembl.org/id/ENSSSCP00000029039.2" } ] } }, { "isoform_ac": "K7GST7-1", "url": "https://www.uniprot.org/uniprotkb/K7GST7/entry", "sequence": { "sequence": "MERCSRCHRLLLLVPLVLGLSAAPAWAGASPVDVLRALRFPSLPDGVRRTRGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPIRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLILDCKKRVTRPLPRSAHPVLDTHGVIIFGARILDEEVFEGDVQELVIIPGVQAAYESCEQKELDCEGGWRETPLKQQSHRTQRSPKQQPPRLHRPQNQEPQRQSTESLYYDYEPPYYDVMTTGTTPDYQDPTPGGEEGILESSPLPPPEEAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPRGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGAGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKPGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPSGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEVGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSSGEDQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1677, "header": "tr|K7GST7-1|K7GST7_PIG Computationally mapped isoform of Collagen alpha-2(XI) chain OS=Sus scrofa OX=9823 GN=COL11A2 PE=4 SV=2 CANONICAL=A0A5G2Q848-1" }, "locus": { "chromosome": "7", "start_pos": 25234636, "end_pos": 25205506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036253.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036253.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030976.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030976.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1171, "start_aa": "Thr", "end_pos": 1171, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1171", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1222, "start_aa": "Thr", "end_pos": 1222, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1222", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1239, "start_aa": "Thr", "end_pos": 1239, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1239", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 269, "start_aa": "Thr", "end_pos": 269, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr269", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 567, "start_aa": "Thr", "end_pos": 567, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr567", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 757, "start_aa": "Thr", "end_pos": 757, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr757", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 973, "start_aa": "Thr", "end_pos": 973, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr973", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520915", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520915", "resource": "KEGG Pathway" }, { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-3000171", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000171", "resource": "Reactome", "description": "Non-integrin membrane-ECM interactions" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K069-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "Col11a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERCSRCHRLLLLLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRKSKGVCPADVAYRVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRSGLQAPLLTLYSAQGVQQLGLELGRPVRFLYEDQRGRPQASAQPIFRGLSLADGKWHHVAVAVKGQSVTLIVDCKKRVTRPLPRSVHPVLDTHGVVIFGAHVLDDEVFEGDVQELLIVPGVQAAYQSCGQKDLECEREQRDGPQTQKPHRAQRSPKKEPARLHKPQNQEPQQQPTESLYYDYEPPYYDVMTTETSPDYQYPTPGEEEGVLESSLLPSLEEEQTDLQVPPTADSFQAEEYGEGGTEPPAGFYDYTYGYGDDYREETELGPALSAETDHTGAVAHGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGPPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPRGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTAGKDGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPFGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGSQGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSPGQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSKLMQDEEATPTGGAPGSPAGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPTRRGGVLLGPVCFMG", "length": 1736 }, "evidence": [ { "id": "A0A5G2Q848", "url": "https://omabrowser.org/oma/group/A0A5G2Q848/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9TJC4-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERCSRCHHLLLLVLLLLWLSAAPAWAGTAPVDVLRALRFPALPDGVRRARGICPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRARPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIIDCKKRVTRPLPRSARPVLDTRGVIIFGARILDEEVFEGDIQELSIIPGVQAAYESCDQKELECEGGWRERPQRQPSHRTQRSPKQQPPRLHRPQNQEPQAQDPTPGEEEGILESSPLPPPEEAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGFPGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARMALRGPPGPMGYTGRPGPLGQPGSPGMKGESGDLGPQGPRGPQGLMGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGIKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGSAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGAKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGETGQAGEAGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDTGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAVPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPMGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGAPVGVVQLTFLRLLSVSARQNISYPCSGEAQDSPLKLRGANEDELSPETSPYIKEIRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSELGAPPRRGGVLLGPVCFMG", "length": 1650 }, "evidence": [ { "id": "A0A5G2Q848", "url": "https://omabrowser.org/oma/group/A0A5G2Q848/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AB32T5W0-1", "protein_name": "Collagen alpha-2(XI) chain isoform X1", "gene_name": "col11a2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDIRKKRRPWCMETSFVLLLCLSMAQADPVDVLRVLQLPSLPEGVQKVPGFCTSRLSGTPDHAYRITKKAQISAPTKQLFSGRFPENFSIMTLVKAKAGLQAFLLSIYNEQGVQQLGLELGRSPIFLYEDQHRKPAPEDYPLFKGVNLADGKWHRIAISVQKKNITLILDCKNRITKTLPRSNNPVLDTKGITVFGARLLDEEVFQGEIQQLLIASNPQAAYDFCEHYSPDCDSPLPKVQSQDPNTYHFDEEQDDYEYPYYYEGTTSVPPSPSKPPSVPAETLTEQAGKANNGKVTKQKTAPAAKPAPAKPAKSKPTPAPKTAKSKPTAAQLLISKIKPTPASKLAAKPKATPAPKNDKKKTNDNGKVNNGQTKVNGNGNGKSNGNGKDTNGKAKAGSNGKPNNNGNGNGKKTNGDAKINGNGPKTVKTVTKVASAKKSETPATKTVTGKPKAQVKAQPTKSKTDKTKANASPAKPKDTKAKAASVTQKPAVFKPTPVPLPRPSKTILDVNNVKSMSRNFPPFDKAVVSATTIKKKPTNGYQQDVDPAYSEADHTPTETDYYYTVEEEAAPQPESDLTGYDESINQVDETVPVEEMDATKTGGEVASQTPEEPFTEEYITSDFGMKEYDYSYKDYNEPIIESKTEDTLGPALSAVTEEGGASVRAIKGEKGEPAVLEPGMLIEGPPGPEGPAGLPGPSGPQGQPGSVGDPGERGPTGKAGLPGADGVPGPPGTSVMLPFRFGQSAGEKGPVASAQEAQAQAILSQARLALKGPSGPMGFTGRPGPLGTPGSPGFKGERGDPGAQGPRGPQGVSGPPGKAGRRGRAGADGARGMPGESGIKGDRGFDGLPGLPGDKGYRGQPGGMGPPGPHGEDGERGDDGDVGPRGLPGEPGPRGLLGPKGPSGLPGPPGVRGNDGPHGPKGNLGPQGEPGPPGQQGAPGTQGMPGPQGATGPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPGGTKGNQGPNGPQGSIGYPGPRGLKGAQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEVGVPGPRGEDGPEGPKGRVGPPGEIGPLGLLGEKGKLGVPGLPGYPGRQGIKGSLGFPGFPGTNGEKGTRGLIGKPGPRGQRGPTGPRGQRGPRGATGKSGAKGGSGSDGPPGPPGERGLTGPQGANGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKVGPPGPPGVVGPHGPSGETGQMGERGHPGPPGPPGEQGLSGSSGKEGTKGDPGPPGGPGKDGPPGLRGFPGERGLPGTPGSGGLKGNEGPAGPPGPAGSSGERGGAGTAGPVGPPGRPGPQGPPGTSGEKGVPGEKGPVGPAGRDGIQGPVGLPGPAGPPGISGEDGDKGEVGEPGQKGAKGSKGEHGPPGPPGPMGPVGQPGAAGADGETGPRGQQGQFGAKGDEGTRGFPGPPGPIGLQGLPGPGGEKGETGDVGPLGPPGPPGPRGPAGPNGADGPQGPPGGLGNPGPIGEKGEPGESGPPGVGGEPGKLGPRGERGEKGESGQPGTPGPPGGKGPTGDDGPKGNPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEQGEAGSPGPTGENGPPGPPGKRGPAGTRGPEGRQGEKGSKGDSGALGPPGKTGPVGPQGQPGKPGTEGLRGLPGTVGEQGSPGAAGPKGPPGPLGPPGLAGLRGDPGAKGEKGHPGMLGLIGPAGEQGEKGDRGMPGPQGSTGPKGETGISGGTGPLGPAGPAGMPGPRGVKGAKGASGGAGPKGEKGVQGPPGPPGPPGDVIQPLPIQIPKKSKRSIDASKILSEADAEAADTTGSEFLTGNEGMEEIFGSLNSLRQEIESMRFPLGTKESPGRTCQDLHLSQPDLKDGEYWIDPNQGCARDSFKVYCNFTAGGETCLYPSKAVENVKMNSWIKEKPGSLFSQFAKGNKFSYVDSVGEAVGVVQLGFLRLLSVQARQNLTYHCQRSVAWTDQTTDGGYKRALRLQGANDEEISYETSPYIKALIDGCSYRKGLDRTVLEVNTPQVEQLPLLDIRISDFGEDNQKFGFEVGPVCFLG", "length": 2060 }, "evidence": [ { "id": "A0A5G2Q848", "url": "https://omabrowser.org/oma/group/A0A5G2Q848/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERCSRCHRLLLLLPLVLGLSAAPGWAGAPPVDVLRALRFPSLPDGVRRAKGICPADVAYRVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPVRFLYEDQTGRPQPPSQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTHGVIIFGARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQPTESLYYDYEPPYYDVMTTGTTPDYQDPTPGEEEEILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPLGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGAARDGPLRLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG", "length": 1736 }, "evidence": [ { "id": "A0A5G2Q848", "url": "https://omabrowser.org/oma/group/A0A5G2Q848/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64739-2", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "Col11a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERCSRCHRLLLFLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRRSKGVCPGDVAYRVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPVRFLYEDQRGRPQASAQPIFRGLSLADGKWHHVAVAVKGQSVTLIVDCKKRVTRPLPRSVHPVLDTHGVVIFGAHILDDEVFEGDVQELLVVPGVQAAYQSCGQKDLECEREQRDGPQTQKPHRAQRSPKKEPARLHKPQSQEPQKQPTESLYYDYEPPYYDVMTTGTAPDYQYPTPGEEEGVLESSPLPFLEEEQTDLQVSPTADSFQAEEYGEGGTDSPAGFYDYTYGYGDDYREETELGPALSAETAHSGAVAHGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGPPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGMKGDRGFDGLPGLPGEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEKGARGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGTAGESGPMGERGHSGPPGPPGEQGLPGTSGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDGGPMGPPGPPGPRGPAGPNGADGPQGSPGGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDNGPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSPGQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSKLIQDEEAVPTGGAPGSPAGLEEIFGSLDSLREEIEQMRRPAGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSQDGPLKLRGANEDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFADLGAPTRRGGVLLGPVCFMG", "length": 1736 }, "evidence": [ { "id": "A0A5G2Q848", "url": "https://omabrowser.org/oma/group/A0A5G2Q848/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "collagen trimer", "id": "GO:0005581", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005581", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent", "id": "GO:0005201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005201", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "collagen fibril organization", "id": "GO:0030199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030199", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "skeletal system morphogenesis", "id": "GO:0048705", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048705", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" }, { "name": "cartilage development", "id": "GO:0051216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051216", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q848", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1518, "end_pos": 1520, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q848", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q848" }, { "id": "PS51461", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51461" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrillar collagen NC1", "eco_id": "ECO_0000259", "start_pos": 1455, "end_pos": 1650, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 269, 567, 757, 973, 1171, 1222, 1239 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1518, "end_pos": 1520 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QD95-1", "uniprot_ac": "A0A5G2QD95", "uniprot_id": "A0A5G2QD95_PIG", "mass": { "chemical_mass": 100366.0, "monoisotopic_mass": 100366.0 }, "refseq": {}, "gene_names": [ { "name": "EXOSC10", "type": "recommended", "evidence": [ { "id": "A0A5G2QD95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ] } ], "protein_names": [ { "name": "Exosome complex component 10", "type": "recommended", "evidence": [ { "id": "A0A5G2QD95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EXOSC10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95", "locus": { "chromosome": "6", "start_pos": 71258999, "end_pos": 71282433, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003412", "url": "https://www.ensembl.org/id/ENSSSCG00000003412" } ] } } ], "crossref": [ { "id": "A0A5G2QD95", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD95", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003412", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003412", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06147", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06147", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012588", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012588", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049559", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049559", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12124", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12124", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12124:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12124:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00570", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00570", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9930044", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6V4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCA1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCA9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD47", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHR9", "url": "https://www.uniprot.org/uniprotkb/F1RHR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHR9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAVQARGLLPAGEEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGEARTGTPGDHRTREEEKCIAAKKIKQSLGNKSMSFPTGKSDRGFRHNWPKR", "length": 881, "header": "tr|A0A5G2QD95-1|A0A5G2QD95_PIG Isoform 1 of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=2 CANONICAL=A0A5G2QD95-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAVQARGLLPAGEEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGEARTGTPGDHRTREEEKCIAAKKIKQSLGNKSMSFPTGKSDRGFRHNWPKR", "length": 881, "header": "tr|A0A5G2QD95-1|A0A5G2QD95_PIG Isoform 1 of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=2 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71259100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070401.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070401.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062581.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062581.2" } ] } }, { "isoform_ac": "A0A8W4F6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6V4/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAVQARGLLPAGEEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMVSNGCVC", "length": 700, "header": "tr|A0A8W4F6V4-1|A0A8W4F6V4_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=1 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71265707, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101774.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101774.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074940.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074940.1" } ] } }, { "isoform_ac": "A0A8W4FCA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA1/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRELFTWFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAVQARGLLPAGEEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGESWLLLSLNGFLSFQKCIAAKKIKQSLGNKSMSFPTGKSDRGFRHNWPKR", "length": 853, "header": "tr|A0A8W4FCA1-1|A0A8W4FCA1_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=1 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71259100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093540.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093540.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076888.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076888.1" } ] } }, { "isoform_ac": "A0A8W4FCA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCA9/entry", "sequence": { "sequence": "MVLIVRLVCCHVPDRGSSSHLSLPFFPPWKIFITQLIFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEVSGFVSLSETTPDP", "length": 721, "header": "tr|A0A8W4FCA9-1|A0A8W4FCA9_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=1 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71281689, "end_pos": 71264609, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099324.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099324.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075932.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075932.1" } ] } }, { "isoform_ac": "A0A8W4FD47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD47/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGNSKSKPSFQFDPNKQPQSGKVRPWTEKAGLSRGLFSALFHHREDRSIWGSFSFSLSPLPSPQVQTIPINYSSKKTKCLESLRAGVWFWRMLVSFLPWEF", "length": 918, "header": "tr|A0A8W4FD47-1|A0A8W4FD47_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=1 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71260576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094970.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094970.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077320.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077320.1" } ] } }, { "isoform_ac": "A0A8W4FHT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT2/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDGYPLTPTSGPAAEEEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGNSKSKPSFQFDPNKQPQSGKVRPWTEKAGLSRGLFSALFHHREDRSIWGSFSFSLSPLPSPQVQTIPINYSSKKTKCLESLRAGVWFWRMLVSFLPWEF", "length": 893, "header": "tr|A0A8W4FHT2-1|A0A8W4FHT2_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=1 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71260576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102841.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102841.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078436.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078436.1" } ] } }, { "isoform_ac": "F1RHR9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHR9/entry", "sequence": { "sequence": "MAPPSPREPKAPSAKSASKSDGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGTGCFSGNMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVRKSGPLPNPERLENVLFGPHDCSHTPSDEPSGTFWEAGEALLDTRCLIATAVITLFNEPSAEENGKRPLTVAQKKAQNIMESFENPFRMFLPSLEHRAHISQAAKSDPSSKIFEISNRWKLASQVQVQKESKEIAKKKAAEQTAARDQAREEFGAAAAQAVSVRQQAALETAARKRERVTSDPRTTEQKQEKKRLKISKKPKDPDPSEKEFTPYDYSKSDFKAFAGESWLLLSLNGFLSFQKCIAAKKIKQSLGNKSMSFPTGKSDRGFRHNWPKR", "length": 867, "header": "tr|F1RHR9-1|F1RHR9_PIG Computationally mapped isoform of Exosome complex component 10 OS=Sus scrofa OX=9823 GN=EXOSC10 PE=3 SV=5 CANONICAL=A0A5G2QD95-1" }, "locus": { "chromosome": "6", "start_pos": 71282396, "end_pos": 71259100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003785.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003785.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003698.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003698.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-9930044", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "resource": "Reactome", "description": "Nuclear RNA decay" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "telomerase RNA binding", "id": "GO:0070034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070034", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear exosome (RNase complex)", "id": "GO:0000176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000176", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "euchromatin", "id": "GO:0000791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000791", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:0000184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000184", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000467", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000467", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "regulation of nucleobase-containing compound metabolic process", "id": "GO:0019219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019219", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear mRNA surveillance", "id": "GO:0071028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071028", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "negative regulation of telomere maintenance via telomerase", "id": "GO:0032211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032211", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "histone mRNA catabolic process", "id": "GO:0071044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071044", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "regulation of telomerase RNA localization to Cajal body", "id": "GO:1904872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent rRNA catabolic process", "id": "GO:0071035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071035", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "TRAMP-dependent tRNA surveillance pathway", "id": "GO:0071038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071038", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "poly(A)-dependent snoRNA 3'-end processing", "id": "GO:0071051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071051", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent snoRNA catabolic process", "id": "GO:0071036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent snRNA catabolic process", "id": "GO:0071037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071037", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent CUT catabolic process", "id": "GO:0071039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071039", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent antisense transcript catabolic process", "id": "GO:0071040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071040", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 860, "end_pos": 862, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QD95-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 881, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QD95-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QD95" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QD95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD95" }, { "id": "PS50967", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50967" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HRDC", "eco_id": "ECO_0000259", "start_pos": 502, "end_pos": 582, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 352, "end_pos": 354 }, { "start_pos": 860, "end_pos": 862 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QAW6-1", "uniprot_ac": "A0A5G2QAW6", "uniprot_id": "A0A5G2QAW6_PIG", "mass": { "chemical_mass": 108733.0, "monoisotopic_mass": 108733.0 }, "refseq": { "ac": "XP_020950116", "name": "rho guanine nucleotide exchange factor 1 isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950116" }, "gene_names": [ { "name": "ARHGEF1", "type": "recommended", "evidence": [ { "id": "A0A5G2QAW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ] }, { "name": "ARHGEF1", "type": "synonym", "evidence": [ { "id": "XP_020950116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950116" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QAW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 1 isoform X10", "type": "synonym", "evidence": [ { "id": "XP_020950116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950116" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGEF1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6", "locus": { "chromosome": "6", "start_pos": 49975876, "end_pos": 49995339, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003040", "url": "https://www.ensembl.org/id/ENSSSCG00000003040" } ] } } ], "crossref": [ { "id": "A0A5G2QAW6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAW6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518073", "url": "https://www.ncbi.nlm.nih.gov/gene/100518073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GDSHCKY", "url": "https://omabrowser.org/oma/group/GDSHCKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45872", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45872", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45872:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45872:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09128", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09128", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17838", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17838", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020950116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950116", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZMZ3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQ45", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA62", "url": "https://www.uniprot.org/uniprotkb/A0A287AA62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFF7", "url": "https://www.uniprot.org/uniprotkb/A0A287AFF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJS0", "url": "https://www.uniprot.org/uniprotkb/A0A287AJS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC94", "url": "https://www.uniprot.org/uniprotkb/A0A287BC94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC94-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS77-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGG2", "url": "https://www.uniprot.org/uniprotkb/F1RGG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGG2-1", "url": "https://www.uniprot.org/uniprotkb/F1RGG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTAVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 968, "header": "tr|A0A5G2QAW6-1|A0A5G2QAW6_PIG Isoform 1 of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMZ3/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTAVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 972, "header": "tr|A0A286ZMZ3-1|A0A286ZMZ3_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066326.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066326.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032827.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032827.1" } ] } }, { "isoform_ac": "A0A286ZQ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ45/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTAVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 943, "header": "tr|A0A286ZQ45-1|A0A286ZQ45_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050245.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050245.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033583.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033583.1" } ] } }, { "isoform_ac": "A0A287AA62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA62/entry", "sequence": { "sequence": "MTDGDAGDGERRLRVRKGLDTTGRSRGLGAGRKNLNAESERWRQREGHGQKHTQRNKREEDRETHKDGRQGRLLCGRTAPRPCQLLMVDADGRNVEPAPSGQIDRQSRERPGGVGAGRGGCPQVQGRSGESRGGAGGQKGKEAEVPGGRGAQAGSGEGRRGGGLRKNAPTSCPARARKRELGHRARDRRARPRAPRRSPPRADTSPAEPMEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTARGPRELAPALAPVSADRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQCLRPSPPHSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERYPGLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 1180, "header": "tr|A0A287AA62-1|A0A287AA62_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49995140, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041398.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041398.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040702.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040702.2" } ] } }, { "isoform_ac": "A0A287AFF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFF7/entry", "sequence": { "sequence": "MTDGDAGDGERRLRVRKGLDTTGRSRGLGAGRKNLNAESERWRQREGHGQKHTQRNKREEDRETHKDGRQGRLLCGRTAPRPCQLLMVDADGRNVEPAPSGQIDRQSRERPGGVGAGRGGCPQVQGRSGESRGGAGGQKGKEAEVPGGRGAQAGSGEGRRGGGLRKNAPTSCPARARKRELGHRARDRRARPRAPRRSPPRADTSPAEPMEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTARGPRELAPALAPVSADRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQCLRPSPPHSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTESPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 1121, "header": "tr|A0A287AFF7-1|A0A287AFF7_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=2 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49995140, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045905.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045905.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042573.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042573.2" } ] } }, { "isoform_ac": "A0A287AJS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJS0/entry", "sequence": { "sequence": "MTDGDAGDGERRLRVRKGLDTTGRSRGLGAGRKNLNAESERWRQREGHGQKHTQRNKREEDRETHKDGRQGRLLCGRTAPRPCQLLMVDADGRNVEPAPSGQIDRQSRERPGGVGAGRGGCPQVQGRSGESRGGAGGQKGKEAEVPGGRGAQAGSGEGRRGGGLRKNAPTSCPARARKRELGHRARDRRARPRAPRRSPPRADTSPAEPMEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTAVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERRWKRLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 1181, "header": "tr|A0A287AJS0-1|A0A287AJS0_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=2 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49995140, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045918.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045918.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044252.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044252.2" } ] } }, { "isoform_ac": "A0A287BC94-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC94/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTESPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 880, "header": "tr|A0A287BC94-1|A0A287BC94_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=2 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042668.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042668.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053703.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053703.2" } ] } }, { "isoform_ac": "A0A5G2QAW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTAVLRVQVPPTVAFELDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQHTISPDEEKSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 968, "header": "tr|A0A5G2QAW6-1|A0A5G2QAW6_PIG Isoform 1 of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076130.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076130.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060554.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060554.1" } ] } }, { "isoform_ac": "A0A5G2QS77-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS77/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLLCCLHADMLGSLGPKEAKKAFIDFYHSFLDKTARGPRELAPALAPVSADRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQCLRPSPPHSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTERLSGRLGRSESLRVSDRRRPSRGSLGAKGRGGGRSRSDVDMDPSSATAVLGPARRATPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 968, "header": "tr|A0A5G2QS77-1|A0A5G2QS77_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=1 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077931.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077931.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067657.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067657.1" } ] } }, { "isoform_ac": "F1RGG2-1", "url": "https://www.uniprot.org/uniprotkb/F1RGG2/entry", "sequence": { "sequence": "MEAEDVARGAAPGPPRPGLVPVSIIGAEDEDFENELKTNPEEQSNQFQSLEQVKQRPAHLMALLQYVAMQFEPGPLVRVGLGRGGAGTDRTRPELISEDIQRQFVQEVVQRQQALVSRQLEDFRSKKLMGMTPWEQELTQLGAWVGRDRASFEARERHLAERQLTHLEEMQCLRPSPPHSAAVVNAISLYMRHLGVRTKSGDKKSGRNFFRKKVIGNRRSDEPTKAKKGLSSFLDAARWNRTEPQAPDFRHLKVETDAEKPVLTERKGGLGVPSRDRNIGAPGQDTPGVSPHPLPGDSPDREPGVDALPELGDPPPQGPVSLEPPVAAESTEEGADTESPEPGDEGEPGRSGLELEPEEPPGWRELVPLGTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFLLEELQNIFPSLEELIEVHSLFLDRLMKRRQDSGYLIEEIGDVLLAQFDGPEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAEREKVEQAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSRPKHRPSPSSSREPLLSSSENGNGGREMPPADGRMERIFTALLPFCRPGPEGQLAAKALQKVLSLKQLLFPLEEDSRTGPPLEGDGVPGGSPLSPAQIQEIREELLNLEETIKHLEEVEEEFCRLRLLLSQLGENTVPQPGCT", "length": 877, "header": "tr|F1RGG2-1|F1RGG2_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 1 OS=Sus scrofa OX=9823 GN=ARHGEF1 PE=1 SV=5 CANONICAL=A0A5G2QAW6-1" }, "locus": { "chromosome": "6", "start_pos": 49990274, "end_pos": 49976621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003377.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003377.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003294.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003294.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 118, "start_aa": "Thr", "end_pos": 118, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr118", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9P7X5-1", "protein_name": "Rho guanine nucleotide exchange factor 1 isoform X1", "gene_name": "arhgef1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLLFSILVGARFAGVGRTCDSMDYEDAHNGRGLSGAQGLNPVMNIIGAEDEDFENDEQPMVDDQCIHFNSIELLKSRPTHLLVFLHHVMLQFDCAPVLCYLHADLMKNLNTKDTKKHFGEFYNTFLEKGAILKVSVPSNIAPEIDRLRPELINEEQQKRYANEIQFAQSPEILRQLEDFRQKRMMGMTPNERELNDVESHRPTDRIPMDMKEKAVAESLLEKMVEANPSIVPDKDKSNSIFGAVAYYMKYLGVKTRAFDNKKSKSGWRPSVPSMLKPWSVNKQIKPVKPPGIGYDGKQSRLDFEAKQNKQPPHRVSVSDSVTPPGRKTGITVSGSTHGSESSEELPISVSVTPSPDFQTDTVGIINNRTDPKPASEGGEVSPVSTGGTVSICEPLAVIDVPPEDIQDSGRKKPRNVRRSESLCVERRHSRRGGSTRAKQSRSRSDVDLQSTSTSHPLSPSPQHSVSVEGDKTPEIALLTPTFVPAPQQEEIEPRLLELEQDPLNWRELASSESLHKLSKKEAKRQEVINELFVTEQAHVRMLSVLQTVFSRPLEKQEYMTANEVATIFSSLDDIIEMHYVFYENLKKLREEDEYIVKTISTPLLNRFSGSEGEWFQKLTARFCSYQSWALEQIKSRQKKDPRFNAFILEAESKPQCRRLQLKDIIPIEMQRLTKYPLLLENIAKNTEDATEKEKINQAAESCRKILNHVNEEVKQMENLLILKDYQRRLDTSGLKPSNELYSEYKTIDLTNRTMLFEGPLTWRVTKEKAIDVHCVLLSDLLVLFQKQDDKMLLKCQSKSNIAVQEGKQMLSPIIKLESVFLREVATDPKALYVIFTWDSGAQIYELVAQSVGERKNWTEAIKSAVDELKKASKSNTKLERNSRAGSVPNNIAVPLYGPAHPPLSPTENGGELLKNRVGRFSEKIRESDPPLIDYLAANGFDLLTHSHTPPEKSATVALDEVMCLKRLLVGSISLSDDAQTLGENGGMAPESQDADGTQLSVEESSTEAGPEVEEHEEDVENKGEEEKGISAPLVLSEERMEEVQMRLQALEEQLKRLRLVEEDHYKLQEALAKYTLQGGHYN", "length": 1082 }, "evidence": [ { "id": "A0A5G2QAW6", "url": "https://omabrowser.org/oma/group/A0A5G2QAW6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q61210-1", "protein_name": "Rho guanine nucleotide exchange factor 1", "gene_name": "Arhgef1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEVAGGAAPGPPRSGLVSIIIGAEDEDFENELEANSEDQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSVAFELDRTRPDLISEDVQRRFIQEVVQSQQAAVSRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGNYEARERHVAERLLSHLEETQHTISTDEEKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPPKTKKGLSSILDPARWNRGEPSAPDCRHLKVEADAEKPGPADRKGGLGMSSRDRTVGTPGQDNPGVSLHPLSTDSVDSREPGVDTPQEPGDTPPQGPTSLEPLAPPESTEDNGETESPEPGDDGEPGRSGLELEPEEPPGWRELVPPDTLLSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMADGGFFPLDELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEESTERGKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSLKVPAPASRLKPRPSPSSIREPLLSSSENGTGGAEMAPADARTERLLNDLLPFCRPGPEGQLAATALQKVLSLKQILLSTEEDSGAGPPRDGDGVPGGRAPGPVHTQEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPNLAAPERSAQTGLS", "length": 920 }, "evidence": [ { "id": "A0A5G2QAW6", "url": "https://omabrowser.org/oma/group/A0A5G2QAW6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92888-1", "protein_name": "Rho guanine nucleotide exchange factor 1", "gene_name": "ARHGEF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDFARGAASPGPSRPGLVPVSIIGAEDEDFENELETNSEEQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEARERHVAERLLMHLEEMQHTISTDEEKSAAVVNAIGLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVPAPASRPKPRPSPSSTREPLLSSSENGNGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAGPPRDGDGVPGGGPLSPARTQEIQENLLSLEETMKQLEELEEEFCRLRPLLSQLGGNSVPQPGCT", "length": 912 }, "evidence": [ { "id": "A0A5G2QAW6", "url": "https://omabrowser.org/oma/group/A0A5G2QAW6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1I6-1", "protein_name": "Rho guanine nucleotide exchange factor 1", "gene_name": "Arhgef1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEVAGGAAPGPPRSGLVSIIIGAEDEDFENELEANPEDQNSQFQSLEQVKRRPAHLMALLQHVALQFEPGPLLCCLHADMLSSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPSVAFELDRTRPDLISEDVQRRFIQEVVQSQQAAVTRQLEDFRSKRLMGMTPWEQELSLLEPWIGKDRGNYEARERHVAERLLSHLEEMQHTISTDEEKSAAVVTAISLYMRHLGVRTKSGDKKSGRNFFRKKVMGNRRSDEPPKTKKGLSSILDPARWNRGEPSAPDCRHLKVEVDEKPGPADRKGSLGISSRDRTVGTPGQDNPGVSLHPLSVDSLDSREPGVDTPQEPGDTPPQGPTSLEPLAPPESTEDNGETESPEPGDDGEPGRSGLEQEPEEPPGWRELVPSDTLLGLPKNQVKRQEVISELLVTEAAHVRMLRVLHDLFYQPMAEGGFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEEPAERAKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSNDPMLSEFKNLDITKKKLVHEGPLTWRLTKDKAVEVHVLLLDDLLLLLQRQDEGCCSSHTSRTLTPTPDGKTMLRPVLRLTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKSWCALITETAGSLKVPAPASRPKPRPSPSSTREPLLSSSENGTGGTEAAPADARTERILNDLLPFCRPGPEGQLAATALQKVLSLKQILLSTEEDSGAGPPRDGDGVPGGGAPGPTHTQEVEENLLSLEVVIKQLEELEEEFCRLRPFLSQLGEILSPNLAAPERSAQTGLS", "length": 919 }, "evidence": [ { "id": "A0A5G2QAW6", "url": "https://omabrowser.org/oma/group/A0A5G2QAW6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "G protein-coupled receptor binding", "id": "GO:0001664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001664", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" }, { "name": "Rho-activating G protein-coupled receptor signaling pathway", "id": "GO:0160221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160221", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QAW6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 968, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QAW6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QAW6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QAW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 473, "end_pos": 662, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QAW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW6" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 704, "end_pos": 817, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 118 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QG98-1", "uniprot_ac": "A0A5G2QG98", "uniprot_id": "A0A5G2QG98_PIG", "mass": { "chemical_mass": 12777.0, "monoisotopic_mass": 12777.0 }, "refseq": {}, "gene_names": [ { "name": "POLR2D", "type": "recommended", "evidence": [ { "id": "A0A5G2QG98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ] } ], "protein_names": [ { "name": "RNA polymerase II subunit D", "type": "synonym", "evidence": [ { "id": "A0A5G2QG98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Core component of RNA polymerase II (Pol II), a DNA-dependent RNA polymerase which synthesizes mRNA precursors and many functional non-coding RNAs using the four ribonucleoside triphosphates as substrates. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. POLR2D/RPB4 is part of a subcomplex with POLR2G/RPB7 that binds to a pocket formed by POLR2A/RPB1, POLR2B/RPB2 and POLR2F/RPABC2 at the base of the clamp element. The POLR2D/RPB4-POLR2G/RPB7 subcomplex seems to lock the clamp via POLR2G/RPB7 in the closed conformation thus preventing double-stranded DNA to enter the active site cleft. The POLR2D/RPB4-POLR2G/RPB7 subcomplex binds single-stranded DNA and RNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4#function" }, { "database": "UniProtKB", "id": "ARBA00057061", "url": "https://www.uniprot.org/uniprotkb/ARBA00057061#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR2D", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98", "locus": { "chromosome": "15", "start_pos": 59498132, "end_pos": 59479510, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039230", "url": "https://www.ensembl.org/id/ENSSSCG00000039230" } ] } } ], "crossref": [ { "id": "A0A5G2QG98", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039230", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039230", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "6EXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6EXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GMH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GMH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GML", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GML&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6TED", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6TED&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7B0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7B0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7EDX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7EDX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7EG7", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7EG7&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7EG8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7EG8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7EG9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7EG9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7EGA", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7EGA&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7F4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7F4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVT", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVT&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NVZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NVZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NW0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NW0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OKX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OKX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OKY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OKY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OL0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OL0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OO3", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OO3&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OOP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OOP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OPD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OPD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OZN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OZN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OZO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OZO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7OZP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7OZP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7PKS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7PKS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7ZWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7ZWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7ZX7", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7ZX7&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7ZX8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7ZX8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8A3Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8A3Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8BVW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8BVW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8BYQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8BYQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8BZ1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8BZ1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OEU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OEU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OEV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OEV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OEW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OEW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OF0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OF0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8RBX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8RBX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8S51", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8S51&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8S52", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8S52&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8S54", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8S54&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8S55", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8S55&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8S5N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8S5N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9ER2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9ER2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9FYX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9FYX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9G0A", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9G0A&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9RTN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9RTN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9RTT", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9RTT&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9RZD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9RZD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9S0U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9S0U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9S3G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9S3G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR005574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21297", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21297", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00006exv", "url": "https://www.rcsb.org/structure/pdb_00006exv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gmh", "url": "https://www.rcsb.org/structure/pdb_00006gmh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gml", "url": "https://www.rcsb.org/structure/pdb_00006gml", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ted", "url": "https://www.rcsb.org/structure/pdb_00006ted", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007b0y", "url": "https://www.rcsb.org/structure/pdb_00007b0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007edx", "url": "https://www.rcsb.org/structure/pdb_00007edx", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007eg7", "url": "https://www.rcsb.org/structure/pdb_00007eg7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007eg8", "url": "https://www.rcsb.org/structure/pdb_00007eg8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007eg9", "url": "https://www.rcsb.org/structure/pdb_00007eg9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007ega", "url": "https://www.rcsb.org/structure/pdb_00007ega", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007f4g", "url": "https://www.rcsb.org/structure/pdb_00007f4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvr", "url": "https://www.rcsb.org/structure/pdb_00007nvr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvs", "url": "https://www.rcsb.org/structure/pdb_00007nvs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvt", "url": "https://www.rcsb.org/structure/pdb_00007nvt", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvu", "url": "https://www.rcsb.org/structure/pdb_00007nvu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvy", "url": "https://www.rcsb.org/structure/pdb_00007nvy", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nvz", "url": "https://www.rcsb.org/structure/pdb_00007nvz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nw0", "url": "https://www.rcsb.org/structure/pdb_00007nw0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007okx", "url": "https://www.rcsb.org/structure/pdb_00007okx", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007oky", "url": "https://www.rcsb.org/structure/pdb_00007oky", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007ol0", "url": "https://www.rcsb.org/structure/pdb_00007ol0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007oo3", "url": "https://www.rcsb.org/structure/pdb_00007oo3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007oop", "url": "https://www.rcsb.org/structure/pdb_00007oop", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007opd", "url": "https://www.rcsb.org/structure/pdb_00007opd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007ozn", "url": "https://www.rcsb.org/structure/pdb_00007ozn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007ozo", "url": "https://www.rcsb.org/structure/pdb_00007ozo", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007ozp", "url": "https://www.rcsb.org/structure/pdb_00007ozp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007pks", "url": "https://www.rcsb.org/structure/pdb_00007pks", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007zwd", "url": "https://www.rcsb.org/structure/pdb_00007zwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007zx7", "url": "https://www.rcsb.org/structure/pdb_00007zx7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007zx8", "url": "https://www.rcsb.org/structure/pdb_00007zx8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008a3y", "url": "https://www.rcsb.org/structure/pdb_00008a3y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008bvw", "url": "https://www.rcsb.org/structure/pdb_00008bvw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008byq", "url": "https://www.rcsb.org/structure/pdb_00008byq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008bz1", "url": "https://www.rcsb.org/structure/pdb_00008bz1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oeu", "url": "https://www.rcsb.org/structure/pdb_00008oeu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oev", "url": "https://www.rcsb.org/structure/pdb_00008oev", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oew", "url": "https://www.rcsb.org/structure/pdb_00008oew", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008of0", "url": "https://www.rcsb.org/structure/pdb_00008of0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008rbx", "url": "https://www.rcsb.org/structure/pdb_00008rbx", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008s51", "url": "https://www.rcsb.org/structure/pdb_00008s51", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008s52", "url": "https://www.rcsb.org/structure/pdb_00008s52", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008s54", "url": "https://www.rcsb.org/structure/pdb_00008s54", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008s55", "url": "https://www.rcsb.org/structure/pdb_00008s55", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008s5n", "url": "https://www.rcsb.org/structure/pdb_00008s5n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009er2", "url": "https://www.rcsb.org/structure/pdb_00009er2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009fyx", "url": "https://www.rcsb.org/structure/pdb_00009fyx", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009g0a", "url": "https://www.rcsb.org/structure/pdb_00009g0a", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009rtn", "url": "https://www.rcsb.org/structure/pdb_00009rtn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009rtt", "url": "https://www.rcsb.org/structure/pdb_00009rtt", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009rzd", "url": "https://www.rcsb.org/structure/pdb_00009rzd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009s0u", "url": "https://www.rcsb.org/structure/pdb_00009s0u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009s3g", "url": "https://www.rcsb.org/structure/pdb_00009s3g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6EXV", "url": "https://www.rcsb.org/structure/6EXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GMH", "url": "https://www.rcsb.org/structure/6GMH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GML", "url": "https://www.rcsb.org/structure/6GML", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6TED", "url": "https://www.rcsb.org/structure/6TED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7B0Y", "url": "https://www.rcsb.org/structure/7B0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7EDX", "url": "https://www.rcsb.org/structure/7EDX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7EG7", "url": "https://www.rcsb.org/structure/7EG7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7EG8", "url": "https://www.rcsb.org/structure/7EG8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7EG9", "url": "https://www.rcsb.org/structure/7EG9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7EGA", "url": "https://www.rcsb.org/structure/7EGA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7F4G", "url": "https://www.rcsb.org/structure/7F4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVR", "url": "https://www.rcsb.org/structure/7NVR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVS", "url": "https://www.rcsb.org/structure/7NVS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVT", "url": "https://www.rcsb.org/structure/7NVT", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVU", "url": "https://www.rcsb.org/structure/7NVU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVY", "url": "https://www.rcsb.org/structure/7NVY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NVZ", "url": "https://www.rcsb.org/structure/7NVZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NW0", "url": "https://www.rcsb.org/structure/7NW0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OKX", "url": "https://www.rcsb.org/structure/7OKX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OKY", "url": "https://www.rcsb.org/structure/7OKY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OL0", "url": "https://www.rcsb.org/structure/7OL0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OO3", "url": "https://www.rcsb.org/structure/7OO3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OOP", "url": "https://www.rcsb.org/structure/7OOP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OPD", "url": "https://www.rcsb.org/structure/7OPD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OZN", "url": "https://www.rcsb.org/structure/7OZN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OZO", "url": "https://www.rcsb.org/structure/7OZO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OZP", "url": "https://www.rcsb.org/structure/7OZP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7PKS", "url": "https://www.rcsb.org/structure/7PKS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7ZWD", "url": "https://www.rcsb.org/structure/7ZWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7ZX7", "url": "https://www.rcsb.org/structure/7ZX7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7ZX8", "url": "https://www.rcsb.org/structure/7ZX8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8A3Y", "url": "https://www.rcsb.org/structure/8A3Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8BVW", "url": "https://www.rcsb.org/structure/8BVW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8BYQ", "url": "https://www.rcsb.org/structure/8BYQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8BZ1", "url": "https://www.rcsb.org/structure/8BZ1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OEU", "url": "https://www.rcsb.org/structure/8OEU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OEV", "url": "https://www.rcsb.org/structure/8OEV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OEW", "url": "https://www.rcsb.org/structure/8OEW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OF0", "url": "https://www.rcsb.org/structure/8OF0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8RBX", "url": "https://www.rcsb.org/structure/8RBX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8S51", "url": "https://www.rcsb.org/structure/8S51", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8S52", "url": "https://www.rcsb.org/structure/8S52", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8S54", "url": "https://www.rcsb.org/structure/8S54", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8S55", "url": "https://www.rcsb.org/structure/8S55", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8S5N", "url": "https://www.rcsb.org/structure/8S5N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9ER2", "url": "https://www.rcsb.org/structure/9ER2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9FYX", "url": "https://www.rcsb.org/structure/9FYX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9G0A", "url": "https://www.rcsb.org/structure/9G0A", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9RTN", "url": "https://www.rcsb.org/structure/9RTN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9RTT", "url": "https://www.rcsb.org/structure/9RTT", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9RZD", "url": "https://www.rcsb.org/structure/9RZD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S0U", "url": "https://www.rcsb.org/structure/9S0U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S3G", "url": "https://www.rcsb.org/structure/9S3G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF03874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112382", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-113418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5578749", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6781823", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6781823", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6796648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6803529", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803529", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72086", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72086", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72165", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73776", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73776", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73779", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73779", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75953", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75953", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76042", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76042", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77075", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77075", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9018519", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLEGRFEDEELQQILDDIQTKRSFQY", "length": 110, "header": "tr|A0A5G2QG98-1|A0A5G2QG98_PIG Isoform 1 of RNA polymerase II subunit D OS=Sus scrofa OX=9823 GN=POLR2D PE=1 SV=1 CANONICAL=A0A5G2QG98-1" }, "isoforms": [ { "isoform_ac": "A0A287ADR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4/entry", "sequence": { "sequence": "MWGPAQPYSDSALSPKPRPFRAVFRGSALPFPAVRVEVRGRSMAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY", "length": 184, "header": "tr|A0A287ADR4-1|A0A287ADR4_PIG Computationally mapped isoform of DNA-directed RNA polymerase II subunit RPB4 OS=Sus scrofa OX=9823 GN=POLR2D PE=1 SV=2 CANONICAL=A0A5G2QG98-1" }, "locus": { "chromosome": "15", "start_pos": 59494210, "end_pos": 59479576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064349.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064349.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042115.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042115.2" } ] } }, { "isoform_ac": "A0A5G2QG98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98/entry", "sequence": { "sequence": "MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLEGRFEDEELQQILDDIQTKRSFQY", "length": 110, "header": "tr|A0A5G2QG98-1|A0A5G2QG98_PIG Isoform 1 of RNA polymerase II subunit D OS=Sus scrofa OX=9823 GN=POLR2D PE=1 SV=1 CANONICAL=A0A5G2QG98-1" }, "locus": { "chromosome": "15", "start_pos": 59494210, "end_pos": 59479702, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069396.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069396.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063777.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063777.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Cryo-EM structure of a mammalian RNA polymerase II elongation complex inhibited by alpha-amanitin.", "journal": "J. Biol. Chem.", "date": "2018", "authors": "Liu Xiangyang, Farnung Lucas, Wigge Christoph, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "29550768", "url": "https://glygen.org/publication/PubMed/29550768" } ] }, { "title": "Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.", "journal": "Nature", "date": "2018", "authors": "Vos SM, Farnung L, Boehning M, Wigge C, Linden A, Urlaub H, Cramer P", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "30135578", "url": "https://glygen.org/publication/PubMed/30135578" } ] }, { "title": "Structure of paused transcription complex Pol II-DSIF-NELF.", "journal": "Nature", "date": "2018", "authors": "Vos SM, Farnung L, Urlaub H, Cramer P", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "30135580", "url": "https://glygen.org/publication/PubMed/30135580" } ] }, { "title": "Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation.", "journal": "Nat. Struct. Mol. Biol.", "date": "2020", "authors": "Vos SM, Farnung L, Linden A, Urlaub H, Cramer P", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "32541898", "url": "https://glygen.org/publication/PubMed/32541898" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structure of a transcribing RNA polymerase II-U1 snRNP complex.", "journal": "Science", "date": "2021", "authors": "Zhang S, Aibara S, Vos SM, Agafonov DE, Luhrmann R, Cramer P", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "33446560", "url": "https://glygen.org/publication/PubMed/33446560" } ] }, { "title": "Structural insights into preinitiation complex assembly on core promoters.", "journal": "Science", "date": "2021", "authors": "Chen Xizi, Qi Yilun, Wu Zihan, Wang Xinxin, Li Jiabei, Zhao Dan, Hou Haifeng, Li Yan, Yu Zishuo, Liu Weida, Wang Mo, Ren Yulei, Li Ze, Yang Huirong, Xu Yanhui", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "33795473", "url": "https://glygen.org/publication/PubMed/33795473" } ] }, { "title": "Structures of mammalian RNA polymerase II pre-initiation complexes.", "journal": "Nature", "date": "2021", "authors": "Aibara Shintaro, Schilbach Sandra, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "33902107", "url": "https://glygen.org/publication/PubMed/33902107" } ] }, { "title": "Allosteric transcription stimulation by RNA polymerase II super elongation complex.", "journal": "Mol. Cell", "date": "2021", "authors": "Chen Y, Vos SM, Dienemann C, Ninov M, Urlaub H, Cramer P", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "34265249", "url": "https://glygen.org/publication/PubMed/34265249" } ] }, { "title": "Structural basis of human transcription-DNA repair coupling.", "journal": "Nature", "date": "2021", "authors": "Kokic Goran, Wagner Felix R, Chernev Aleksandar, Urlaub Henning, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "34526721", "url": "https://glygen.org/publication/PubMed/34526721" } ] }, { "title": "Structure of an inactive RNA polymerase II dimer.", "journal": "Nucleic Acids Res.", "date": "2021", "authors": "Aibara Shintaro, Dienemann Christian, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "34530439", "url": "https://glygen.org/publication/PubMed/34530439" } ] }, { "title": "Structural basis of Integrator-mediated transcription regulation.", "journal": "Science", "date": "2021", "authors": "Fianu Isaac, Chen Ying, Dienemann Christian, Dybkov Olexandr, Linden Andreas, Urlaub Henning, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "34762484", "url": "https://glygen.org/publication/PubMed/34762484" } ] }, { "title": "RPAP2 regulates a transcription initiation checkpoint by inhibiting assembly of pre-initiation complex.", "journal": "Cell Rep.", "date": "2022", "authors": "Wang Xinxin, Qi Yilun, Wang Zhenning, Wang Li, Song Aixia, Tao Bolin, Li Jiabei, Zhao Dan, Zhang Hongwei, Jin Qianwei, Jiang Yi-Zhou, Chen Fei Xavier, Xu Yanhui, Chen Xizi", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "35476980", "url": "https://glygen.org/publication/PubMed/35476980" } ] }, { "title": "Structure of a backtracked hexasomal intermediate of nucleosome transcription.", "journal": "Mol. Cell", "date": "2022", "authors": "Farnung Lucas, Ochmann Moritz, Garg Gaurika, Vos Seychelle M, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "35858621", "url": "https://glygen.org/publication/PubMed/35858621" } ] }, { "title": "Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Rengachari Srinivasan, Schilbach Sandra, Kaliyappan Thangavelu, Gouge Jerome, Zumer Kristina, Schwarz Juliane, Urlaub Henning, Dienemann Christian, Vannini Alessandro, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "36424526", "url": "https://glygen.org/publication/PubMed/36424526" } ] }, { "title": "Structural basis of transcription reduction by a promoter-proximal+1 nucleosome.", "journal": "Mol. Cell", "date": "2023", "authors": "Abril-Garrido Julio, Dienemann Christian, Grabbe Frauke, Velychko Taras, Lidschreiber Michael, Wang Haibo, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "37148879", "url": "https://glygen.org/publication/PubMed/37148879" } ] }, { "title": "Structure of the transcribing RNA polymerase II-Elongin complex.", "journal": "Nat. Struct. Mol. Biol.", "date": "2023", "authors": "Chen Ying, Kokic Goran, Dienemann Christian, Dybkov Olexandr, Urlaub Henning, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "37932450", "url": "https://glygen.org/publication/PubMed/37932450" } ] }, { "title": "Structural basis of Integrator-dependent RNA polymerase II termination.", "journal": "Nature", "date": "2024", "authors": "Fianu Isaac, Ochmann Moritz, Walshe James L, Dybkov Olexandr, Cruz Joseph Neos, Urlaub Henning, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "38570683", "url": "https://glygen.org/publication/PubMed/38570683" } ] }, { "title": "Three-step mechanism of promoter escape by RNA polymerase II.", "journal": "Mol. Cell", "date": "2024", "authors": "Zhan Yumeng, Grabbe Frauke, Oberbeckmann Elisa, Dienemann Christian, Cramer Patrick", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "38604172", "url": "https://glygen.org/publication/PubMed/38604172" } ] }, { "title": "STK19 facilitates the clearance of lesion-stalled RNAPII during transcription-coupled DNA repair.", "journal": "Cell", "date": "2024", "authors": "van den Heuvel Diana, Rodr\u00edguez-Mart\u00ednez Marta, van der Meer Paula J, Nieto Moreno Nicolas, Park Jiyoung, Kim Hyun-Suk, van Schie Janne J M, Wondergem Annelotte P, D'Souza Areetha, Yakoub George, Herlihy Anna E, Kashyap Krushanka, Boissi\u00e8re Thierry, Walker Jane, Mitter Richard, Apelt Katja, de Lint Klaas, Kird\u00f6k Idil, Ljungman Mats, Wolthuis Rob M F, Cramer Patrick, Sch\u00e4rer Orlando D, Kokic Goran, Svejstrup Jesper Q, Luijsterburg Martijn S", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "39547229", "url": "https://glygen.org/publication/PubMed/39547229" } ] }, { "title": "IWS1 positions downstream DNA to globally stimulate Pol II elongation.", "journal": "Nat. Commun.", "date": "2025", "authors": "Yan Y., Urlaub H., Cramer P., Maier K.C., Ochmann M., Zumer K., Walshe J.L., Bauerle M., Neef U., Rus P., Zheenbekova A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "40835814", "url": "https://glygen.org/publication/PubMed/40835814" } ] }, { "title": "Molecular mechanism of co-transcriptional H3K36 methylation by SETD2.", "journal": "Nat. Commun.", "date": "2025", "authors": "Urlaub H., Cramer P., Dybkov O., Dienemann C., Ochmann M., Walshe J.L., Neef U., Oberthur C., Zheenbekova A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADR4", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR4" } ], "reference": [ { "type": "PubMed", "id": "41162378", "url": "https://glygen.org/publication/PubMed/41162378" } ] } ], "pathway": [ { "id": "R-SSC-112382", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "resource": "Reactome", "description": "Formation of RNA Pol II elongation complex" }, { "id": "R-SSC-113418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113418", "resource": "Reactome", "description": "Formation of the Early Elongation Complex" }, { "id": "R-SSC-5578749", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "resource": "Reactome", "description": "Transcriptional regulation by small RNAs" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-6781823", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6781823", "resource": "Reactome", "description": "Formation of TC-NER Pre-Incision Complex" }, { "id": "R-SSC-6782135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "resource": "Reactome", "description": "Dual incision in TC-NER" }, { "id": "R-SSC-6782210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in TC-NER" }, { "id": "R-SSC-6796648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "resource": "Reactome", "description": "TP53 Regulates Transcription of DNA Repair Genes" }, { "id": "R-SSC-6803529", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803529", "resource": "Reactome", "description": "FGFR2 alternative splicing" }, { "id": "R-SSC-6807505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "resource": "Reactome", "description": "RNA polymerase II transcribes snRNA genes" }, { "id": "R-SSC-72086", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72086", "resource": "Reactome", "description": "mRNA Capping" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-72165", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "resource": "Reactome", "description": "mRNA Splicing - Minor Pathway" }, { "id": "R-SSC-72203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "resource": "Reactome", "description": "Processing of Capped Intron-Containing Pre-mRNA" }, { "id": "R-SSC-73776", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73776", "resource": "Reactome", "description": "RNA Polymerase II Promoter Escape" }, { "id": "R-SSC-73779", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73779", "resource": "Reactome", "description": "RNA Polymerase II Transcription Pre-Initiation And Promoter Opening" }, { "id": "R-SSC-75953", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75953", "resource": "Reactome", "description": "RNA Polymerase II Transcription Initiation" }, { "id": "R-SSC-75955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "resource": "Reactome", "description": "RNA Polymerase II Transcription Elongation" }, { "id": "R-SSC-76042", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76042", "resource": "Reactome", "description": "RNA Polymerase II Transcription Initiation And Promoter Clearance" }, { "id": "R-SSC-77075", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77075", "resource": "Reactome", "description": "RNA Pol II CTD phosphorylation and interaction with CE" }, { "id": "R-SSC-9018519", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "resource": "Reactome", "description": "Estrogen-dependent gene expression" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "RNA polymerase II, core complex", "id": "GO:0005665", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005665", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase complex", "id": "GO:0000428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000428", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "translation initiation factor binding", "id": "GO:0031369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031369", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006367", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "transcription elongation by RNA polymerase II", "id": "GO:0006368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006368", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" }, { "name": "DNA-templated transcription initiation", "id": "GO:0006352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006352", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QG98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QG98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QG98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QG98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG98" }, { "id": "SM00657", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00657" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA polymerase Rpb4/RPC9 core", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 109, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 }, { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q9C4-1", "uniprot_ac": "A0A5G2Q9C4", "uniprot_id": "A0A5G2Q9C4_PIG", "mass": { "chemical_mass": 42350.0, "monoisotopic_mass": 42350.0 }, "refseq": {}, "gene_names": [ { "name": "ACOT7", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ] } ], "protein_names": [ { "name": "palmitoyl-CoA hydrolase", "type": "recommended", "evidence": [ { "id": "A0A5G2Q9C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4/entry#names_and_taxonomy" } ] }, { "name": "3.1.2.2", "type": "synonym", "evidence": [ { "id": "A0A5G2Q9C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACOT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4", "locus": { "chromosome": "6", "start_pos": 67152429, "end_pos": 67254103, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003377", "url": "https://www.ensembl.org/id/ENSSSCG00000003377" } ] } } ], "crossref": [ { "id": "A0A5G2Q9C4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9C4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003377", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003377", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03442", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03442", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514773", "url": "https://www.ncbi.nlm.nih.gov/gene/100514773", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514773", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514773", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTDVNWG", "url": "https://omabrowser.org/oma/group/PTDVNWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BB59", "url": "https://www.orthodb.org/?gene=A0A287BB59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11049:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11049:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-77289", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A7V2", "url": "https://www.uniprot.org/uniprotkb/A0A287A7V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8N7", "url": "https://www.uniprot.org/uniprotkb/A0A287B8N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8N7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB59", "url": "https://www.uniprot.org/uniprotkb/A0A287BB59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIK3", "url": "https://www.uniprot.org/uniprotkb/F1RIK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RIK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLLSRALRLWELGTQAASRRPVSAQECLRPRSPGTRCWLSTPADGPTSSLLFQPSVTARIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 382, "header": "tr|A0A5G2Q9C4-1|A0A5G2Q9C4_PIG Isoform 1 of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=2 CANONICAL=A0A5G2Q9C4-1" }, "isoforms": [ { "isoform_ac": "A0A287A7V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7V2/entry", "sequence": { "sequence": "MAPPLPSPSMAPPGLIHFAPGLPDTCVLPRPPASAAAAAAAAAAAASMSGPTADTPSAIQICRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 356, "header": "tr|A0A287A7V2-1|A0A287A7V2_PIG Computationally mapped isoform of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=1 CANONICAL=A0A5G2Q9C4-1" }, "locus": { "chromosome": "6", "start_pos": 67254095, "end_pos": 67152738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039994.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039994.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040023.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040023.1" } ] } }, { "isoform_ac": "A0A287B8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8N7/entry", "sequence": { "sequence": "MLLVRRAVALGALRKAASEASLREKAKLIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 350, "header": "tr|A0A287B8N7-1|A0A287B8N7_PIG Computationally mapped isoform of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=2 CANONICAL=A0A5G2Q9C4-1" }, "locus": { "chromosome": "6", "start_pos": 67234481, "end_pos": 67152738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047562.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047562.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052442.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052442.2" } ] } }, { "isoform_ac": "A0A287BB59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB59/entry", "sequence": { "sequence": "MAPPLPSPSMAPPGLIHFAPGLPDTCVLPRPPASAAAAAAAAAAAASMSGPTADTPSAIQICRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 385, "header": "tr|A0A287BB59-1|A0A287BB59_PIG Computationally mapped isoform of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=1 CANONICAL=A0A5G2Q9C4-1" }, "locus": { "chromosome": "6", "start_pos": 67254095, "end_pos": 67152738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056129.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056129.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053348.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053348.1" } ] } }, { "isoform_ac": "A0A5G2Q9C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4/entry", "sequence": { "sequence": "MRLLSRALRLWELGTQAASRRPVSAQECLRPRSPGTRCWLSTPADGPTSSLLFQPSVTARIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 382, "header": "tr|A0A5G2Q9C4-1|A0A5G2Q9C4_PIG Isoform 1 of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=2 CANONICAL=A0A5G2Q9C4-1" }, "locus": { "chromosome": "6", "start_pos": 67244873, "end_pos": 67152738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078280.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078280.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060537.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060537.2" } ] } }, { "isoform_ac": "F1RIK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RIK3/entry", "sequence": { "sequence": "MGAKACSCWGTSPAFLHRHRQIEGLEDAREIASRLISDRSGRAASRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQDGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGNKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKGRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKSLPVPQLLPETEDEKKRFEEGKGRYLQMKAKRQGQVEPQP", "length": 368, "header": "tr|F1RIK3-1|F1RIK3_PIG Computationally mapped isoform of palmitoyl-CoA hydrolase OS=Sus scrofa OX=9823 GN=ACOT7 PE=1 SV=3 CANONICAL=A0A5G2Q9C4-1" }, "locus": { "chromosome": "6", "start_pos": 67253267, "end_pos": 67152738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003747.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003747.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003661.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003661.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 48, "start_aa": "Thr", "end_pos": 48, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr48", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514773", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514773", "resource": "KEGG Pathway" }, { "id": "R-SSC-77289", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "resource": "Reactome", "description": "Mitochondrial Fatty Acid Beta-Oxidation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N7U4-1", "protein_name": "palmitoyl-CoA hydrolase", "gene_name": "ACOT7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLLTRALCLCALGRQAAFRRPVTAQEWCLRPGQRCWASIQAVGTRSALSSKFGVITRIMRPDDANVAGNVHGGTVLKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIIQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVNNFVKRYRAASAFFTYVSLSPEGKSLPVPQLVPETEDEKKRFEEGKGRYLQMKAKRQGQAETQA", "length": 380 }, "evidence": [ { "id": "A0A5G2Q9C4", "url": "https://omabrowser.org/oma/group/A0A5G2Q9C4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O00154-1", "protein_name": "Cytosolic acyl coenzyme A thioester hydrolase", "gene_name": "ACOT7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLLARALRLCEFGRQASSRRLVAGQGCVGPRRGCCAPVQVVGPRADLPPCGACITGRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVPETEDEKKRFEEGKGRYLQMKAKRQGHAEPQP", "length": 380 }, "evidence": [ { "id": "A0A5G2Q9C4", "url": "https://omabrowser.org/oma/group/A0A5G2Q9C4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91V12-1", "protein_name": "Cytosolic acyl coenzyme A thioester hydrolase", "gene_name": "Acot7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLLVGTLRLWEVGRQVAFSSLTPGQECSGLRKTFWAAMRAVRTRADHQKLGHCVTMGRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEVPPIVYLRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDNSQKRYRAASAFFTYVSLNQEGKPMPVPQLVPETEDEKKRFEEGKGRYLQMKAKRQGHTEPQP", "length": 381 }, "evidence": [ { "id": "A0A5G2Q9C4", "url": "https://omabrowser.org/oma/group/A0A5G2Q9C4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "acyl-CoA metabolic process", "id": "GO:0006637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006637", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "fatty acid catabolic process", "id": "GO:0009062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009062", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "coenzyme A biosynthetic process", "id": "GO:0015937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015937", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "medium-chain fatty-acyl-CoA catabolic process", "id": "GO:0036114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036114", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "long-chain fatty-acyl-CoA catabolic process", "id": "GO:0036116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036116", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "medium-chain fatty acid biosynthetic process", "id": "GO:0051792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051792", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "palmitic acid biosynthetic process", "id": "GO:1900535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900535", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "fatty acyl-CoA hydrolase activity", "id": "GO:0047617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047617", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "carboxylic ester hydrolase activity", "id": "GO:0052689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052689", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "long-chain fatty acyl-CoA binding", "id": "GO:0036042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036042", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" }, { "name": "long-chain fatty acyl-CoA hydrolase activity", "id": "GO:0052816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052816", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-5690043", "name": "Cytosolic ACOTs hydrolyse MCFA-CoA, LCFA-CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5690043", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690043" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q9C4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 382, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q9C4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q9C4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q9C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9C4" }, { "id": "PS51770", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51770" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HotDog ACOT-type", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 170, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 48 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 303, "end_pos": 305 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A4X1WCQ9-1", "uniprot_ac": "A0A4X1WCQ9", "uniprot_id": "A0A4X1WCQ9_PIG", "mass": { "chemical_mass": 16145.0, "monoisotopic_mass": 16145.0 }, "refseq": {}, "gene_names": [ { "name": "ARF3", "type": "recommended", "evidence": [ { "id": "A0A4X1WCQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ] } ], "protein_names": [ { "name": "ARF GTPase 3", "type": "synonym", "evidence": [ { "id": "A0A4X1WCQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "GTP-binding protein involved in protein trafficking; modulates vesicle budding and uncoating within the Golgi apparatus.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B5T6", "url": "https://www.uniprot.org/uniprotkb/A0A287B5T6#function" }, { "database": "UniProtKB", "id": "RU369003", "url": "https://www.uniprot.org/uniprotkb/RU369003#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARF3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9", "locus": { "chromosome": "5", "start_pos": 14975630, "end_pos": 14978446, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000051954", "url": "https://www.ensembl.org/id/ENSSSCG00000051954" } ] } } ], "crossref": [ { "id": "A0A4X1WCQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1WCQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031381", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031381", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04150", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04150", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100301570", "url": "https://www.ncbi.nlm.nih.gov/gene/100301570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IRQRHWF", "url": "https://omabrowser.org/oma/group/IRQRHWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B5T6", "url": "https://www.orthodb.org/?gene=A0A287B5T6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11711", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11711", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660514", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660514", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B5T6", "url": "https://www.uniprot.org/uniprotkb/A0A287B5T6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5T6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFW2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 144, "header": "tr|A0A4X1WCQ9-1|A0A4X1WCQ9_PIG Isoform 1 of ARF GTPase 3 OS=Sus scrofa OX=9823 GN=ARF3 PE=3 SV=1 CANONICAL=A0A4X1WCQ9-1" }, "isoforms": [ { "isoform_ac": "A0A287B5T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5T6/entry", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 181, "header": "tr|A0A287B5T6-1|A0A287B5T6_PIG Computationally mapped isoform of ADP-ribosylation factor OS=Sus scrofa OX=9823 GN=ARF3 PE=3 SV=3 CANONICAL=A0A4X1WCQ9-1" }, "locus": { "chromosome": "5", "start_pos": 14978353, "end_pos": 14976195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044404.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044404.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051450.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051450.3" } ] } }, { "isoform_ac": "A0A4X1WCQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9/entry", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 144, "header": "tr|A0A4X1WCQ9-1|A0A4X1WCQ9_PIG Isoform 1 of ARF GTPase 3 OS=Sus scrofa OX=9823 GN=ARF3 PE=3 SV=1 CANONICAL=A0A4X1WCQ9-1" }, "locus": { "chromosome": "5", "start_pos": 14978353, "end_pos": 14976195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097720.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097720.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079090.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079090.1" } ] } }, { "isoform_ac": "A0A5G2RFW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFW2/entry", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKGMAGPCNLCWGCRLPTYPGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 201, "header": "tr|A0A5G2RFW2-1|A0A5G2RFW2_PIG Computationally mapped isoform of ARF GTPase 3 OS=Sus scrofa OX=9823 GN=ARF3 PE=3 SV=1 CANONICAL=A0A4X1WCQ9-1" }, "locus": { "chromosome": "5", "start_pos": 14978353, "end_pos": 14976195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098097.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098097.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077451.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077451.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1660514", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660514", "resource": "Reactome", "description": "Synthesis of PIPs at the Golgi membrane" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1P8BDK6-1", "protein_name": "ADP-ribosylation factor", "gene_name": "ARFA1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATKA", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "G3I6J4-1", "protein_name": "ADP-ribosylation factor", "gene_name": "Arf3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P11076-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P61205-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "Arf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61206-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "Arf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5E9I6-1", "protein_name": "ADP-ribosylation factor 3", "gene_name": "ARF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK", "length": 181 }, "evidence": [ { "id": "A0A4X1WCQ9", "url": "https://omabrowser.org/oma/group/A0A4X1WCQ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" }, { "name": "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum", "id": "GO:0006890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006890", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" }, { "id": "A0A4X1WCQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "binding_site_uniprot": 31, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 31, "end_pos": 31, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" }, { "id": "A0A4X1WCQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCQ9" } ], "binding_site_uniprot": 48, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 48, "end_pos": 48, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2Q7Y9-1", "uniprot_ac": "A0A5G2Q7Y9", "uniprot_id": "A0A5G2Q7Y9_PIG", "mass": { "chemical_mass": 103131.0, "monoisotopic_mass": 103131.0 }, "refseq": {}, "gene_names": [ { "name": "MMRN2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ] } ], "protein_names": [ { "name": "Multimerin-2", "type": "recommended", "evidence": [ { "id": "A0A5G2Q7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Extracellular matrix protein that plays significant roles in the vascular system and is required for the maintenance and stability of blood vessel. Affects several essential steps in angiogenesis including endothelial cell proliferation, migration, and tube formation. Positively regulates angiogenesis by acting as a ligand for CD93 receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BB44", "url": "https://www.uniprot.org/uniprotkb/A0A287BB44#function" }, { "database": "UniProtKB", "id": "ARBA00054312", "url": "https://www.uniprot.org/uniprotkb/ARBA00054312#function" }, { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MMRN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9", "locus": { "chromosome": "14", "start_pos": 87896074, "end_pos": 87916342, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024048", "url": "https://www.ensembl.org/id/ENSSSCG00000024048" } ] } } ], "crossref": [ { "id": "A0A5G2Q7Y9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7Y9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024048", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024048", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BB44", "url": "https://www.uniprot.org/uniprotkb/A0A287BB44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEN5", "url": "https://www.uniprot.org/uniprotkb/F1SEN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SEN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEN6", "url": "https://www.uniprot.org/uniprotkb/F1SEN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILIVLLSLGGPLGAWAQIPGIKFSDPYSSRPPGVWKAEAEDISRDPARRNWCPYQTSRLVTFVAACKTEKFLVHSQKPCPQGAPDCQKVKVMYRMAHKPVYQVKQKVLASMAWKCCPGFAGPDCQDQDPMVIPEPEDPGDSLQEPWDGPVSFEPGHLAAEFSNVVEQQEHRLGDLQNDIDQVADSLPGLWKALASNLTVATEANQTELEFPDRSLEQVLLPHIDTFLQGRFSPMWRSFNQSLNSLSQAIRNLSLDVEANRQAIKRVQEGAVARGDLQELGAKFETKVQENAQRVGQLRQDVDDRLNAQHLSLHQSLSEVQADVDSKLKKALKAQESLGANGSLVLAAAGAAARPEPESLQARLGQLQRNLSALHVTTAHREEELQSTLADMRATLARHVDEIKELYSESDDTFDQISKVERLVEELQVNHTALRELRVILMEKSLIMEENKEDMERQLLELNLTLQHLQGAHADLIKYVKDCNCQKLYFDLDVIREGQRDTTRALEETQVSLDERRQQDGSSLQALSGRVAVLAQAVEAHQVEAEQARADASRLRSKLRALGDEVSTLRATKGEFRREIRQLHSSFSALLEDALRHEAVLTALFGEEVMEEMSEEEPGPLPLSYEQIRVALQDAASGLQEQSLGWDALARVAALEQASRGGKQAERLEPSRDATPEEAGGQDSAGLAQALQRLSSDLERVGQCCEVSRASSFNSSLEDLRGALSTTEHGLEQHQRLFHSLFGNFEGLVAANVSLDLGKLQAMLSRKKKQQRDLEGPKRRDRKQVEPLADTQVKGPALWWAGSPVAFYASFSEGTAALQTVKFNTTYFNIGSSYFPEHGYFRAPERGVYFFAVSIEFGPGPGTGQLVFGGHHRTPVYTTEEQRGRSTATTFAMAELQKGERVWFELTQGSIIKRSPPGSAFGGFLIFKT", "length": 929, "header": "tr|A0A5G2Q7Y9-1|A0A5G2Q7Y9_PIG Isoform 1 of Multimerin-2 OS=Sus scrofa OX=9823 GN=MMRN2 PE=1 SV=1 CANONICAL=A0A5G2Q7Y9-1" }, "isoforms": [ { "isoform_ac": "A0A287BB44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB44/entry", "sequence": { "sequence": "MGYSQGAGALATARSLERKDVAGNVKGARGLGWGGGCALAPSCSLGRVETWVWLSSPLLWLVLSRNWCPYQTSRLVTFVAACKTEKFLVHSQKPCPQGAPDCQKVKVMYRMAHKPVYQVKQKVLASMAWKCCPGFAGPDCQDQDPMVIPEPEDPGDSLQEPWDGPVSFEPGHLAAEFSNVVEQQEHRLGDLQNDIDQVADSLPGLWKALASNLTVATEANQTELEFPDRSLEQVLLPHIDTFLQGRFSPMWRSFNQSLNSLSQAIRNLSLDVEANRQAIKRVQEGAVARGDLQELGAKFETKVQENAQRVGQLRQDVDDRLNAQHLSLHQSLSEVQADVDSKLKKALKAQESLGANGSLVLAAAGAAARPEPESLQARLGQLQRNLSALHVTTAHREEELQSTLADMRATLARHVDEIKELYSESDDTFDQISKVERLVEELQVNHTALRELRVILMEKSLIMEENKEDMERQLLELNLTLQHLQGAHADLIKYVKDCNCQKLYFDLDVIREGQRDTTRALEETQVSLDERRQQDGSSLQALSGRVAVLAQAVEAHQVEAEQARADASRLRSKLRALGDEVSTLRATKGEFRREIRQLHSSFSALLEDALRHEAVLTALFGEEVMEEMSEEEPGPLPLSYEQIRVALQDAASGLQEQSLGWDALAQASRGGKQAERLEPSRDATPEEAGGQDSAGLAQALQRLSSDLERVGQCCEVSRASSFNSSLEDLRGALSTTEHGLEQHQRLFHSLFGNFEGLVAANVSLDLGKLQAMLSREGPKRRDRKQVEPLADTQVKGPALWWAGSPVAFYASFSEGTAALQTVKFNTTYFNIGSSYFPEHGYFRAPERGVYFFAVSIEFGPGPGTGQLVFGGHHRTPVYTTEEQRGRSTATTFAMAELQKGERVWFELTQGSIIKRSPPGSAFGGFLIFKT", "length": 930, "header": "tr|A0A287BB44-1|A0A287BB44_PIG Computationally mapped isoform of Multimerin-2 OS=Sus scrofa OX=9823 GN=MMRN2 PE=1 SV=3 CANONICAL=A0A5G2Q7Y9-1" }, "locus": { "chromosome": "14", "start_pos": 87908225, "end_pos": 87900744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043319.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043319.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053328.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053328.3" } ] } }, { "isoform_ac": "A0A5G2Q7Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9/entry", "sequence": { "sequence": "MILIVLLSLGGPLGAWAQIPGIKFSDPYSSRPPGVWKAEAEDISRDPARRNWCPYQTSRLVTFVAACKTEKFLVHSQKPCPQGAPDCQKVKVMYRMAHKPVYQVKQKVLASMAWKCCPGFAGPDCQDQDPMVIPEPEDPGDSLQEPWDGPVSFEPGHLAAEFSNVVEQQEHRLGDLQNDIDQVADSLPGLWKALASNLTVATEANQTELEFPDRSLEQVLLPHIDTFLQGRFSPMWRSFNQSLNSLSQAIRNLSLDVEANRQAIKRVQEGAVARGDLQELGAKFETKVQENAQRVGQLRQDVDDRLNAQHLSLHQSLSEVQADVDSKLKKALKAQESLGANGSLVLAAAGAAARPEPESLQARLGQLQRNLSALHVTTAHREEELQSTLADMRATLARHVDEIKELYSESDDTFDQISKVERLVEELQVNHTALRELRVILMEKSLIMEENKEDMERQLLELNLTLQHLQGAHADLIKYVKDCNCQKLYFDLDVIREGQRDTTRALEETQVSLDERRQQDGSSLQALSGRVAVLAQAVEAHQVEAEQARADASRLRSKLRALGDEVSTLRATKGEFRREIRQLHSSFSALLEDALRHEAVLTALFGEEVMEEMSEEEPGPLPLSYEQIRVALQDAASGLQEQSLGWDALARVAALEQASRGGKQAERLEPSRDATPEEAGGQDSAGLAQALQRLSSDLERVGQCCEVSRASSFNSSLEDLRGALSTTEHGLEQHQRLFHSLFGNFEGLVAANVSLDLGKLQAMLSRKKKQQRDLEGPKRRDRKQVEPLADTQVKGPALWWAGSPVAFYASFSEGTAALQTVKFNTTYFNIGSSYFPEHGYFRAPERGVYFFAVSIEFGPGPGTGQLVFGGHHRTPVYTTEEQRGRSTATTFAMAELQKGERVWFELTQGSIIKRSPPGSAFGGFLIFKT", "length": 929, "header": "tr|A0A5G2Q7Y9-1|A0A5G2Q7Y9_PIG Isoform 1 of Multimerin-2 OS=Sus scrofa OX=9823 GN=MMRN2 PE=1 SV=1 CANONICAL=A0A5G2Q7Y9-1" }, "locus": { "chromosome": "14", "start_pos": 87916294, "end_pos": 87900744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081699.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081699.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060259.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060259.1" } ] } }, { "isoform_ac": "F1SEN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SEN5/entry", "sequence": { "sequence": "MILIVLLSLGGPLGAWAQIPGIKFSDPYSSRPPGVWKAEAEDISRDPARRNWCPYQTSRLVTFVAACKTEKFLVHSQKPCPQGAPDCQKVKVMYRMAHKPVYQVKQKVLASMAWKCCPGFAGPDCQDQGHLAAEFSNVVEQQEHRLGDLQNDIDQVADSLPGLWKALASNLTVATEANQTELEFPDRSLEQVLLPHIDTFLQGRFSPMWRSFNQSLNSLSQAIRNLSLDVEANRQAIKRVQEGAVARGDLQELGAKFETKVQENAQRVGQLRQDVDDRLNAQHLSLHQSLSEVQADVDSKLKKALKAQESLGANGSLVLAAAGAAARPEPESLQARLGQLQRNLSALHVTTAHREEELQSTLADMRATLARHVDEIKELYSESDDTFDQISKVERLVEELQVNHTALRELRVILMEKSLIMEENKEDMERQLLELNLTLQHLQGAHADLIKYVKDCNCQKLYFDLDVIREGQRDTTRALEETQVSLDERRQQDGSSLQALSGRVAVLAQAVEAHQVEAEQARADASRLRSKLRALGDEVSTLRATKGEFRREIRQLHSSFSALLEDALRHEAVLTALFGEEVMEEMSEEEPGPLPLSYEQIRVALQDAASGLQEQSLGWDALAAGWQLWSRRRGAASRPSAWSPAGTRLQRRPAGRTLLGWLRRSSA", "length": 667, "header": "tr|F1SEN5-1|F1SEN5_PIG Computationally mapped isoform of Multimerin 2 OS=Sus scrofa OX=9823 GN=MMRN2 PE=1 SV=3 CANONICAL=A0A5G2Q7Y9-1" }, "locus": { "chromosome": "14", "start_pos": 87916294, "end_pos": 87904560, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011346.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011346.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011052.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011052.4" } ] } }, { "isoform_ac": "F1SEN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEN6/entry", "sequence": { "sequence": "MILIVLLSLGGPLGAWAQIPGIKFSDPYSSRPPGVWKAEAEDISRDPARRNWCPYQTSRLVTFVAACKTEKFLVHSQKPCPQGAPDCQKVKDIPSAFNPQTSSLHLTFCLGLGGHLAAEFSNVVEQQEHRLGDLQNDIDQVADSLPGLWKALASNLTVATEANQTELEFPDRSLEQVLLPHIDTFLQGRFSPMWRSFNQSLNSLSQAIRNLSLDVEANRQAIKRVQEGAVARGDLQELGAKFETKVQENAQRVGQLRQDVDDRLNAQHLSLHQSLSEVQADVDSKLKKALKAQESLGANGSLVLAAAGAAARPEPESLQARLGQLQRNLSALHVTTAHREEELQSTLADMRATLARHVDEIKELYSESDDTFDQISKVERLVEELQVNHTALRELRVILMEKSLIMEENKEDMERQLLELNLTLQHLQGAHADLIKYVKDCNCQKLYFDLDVIREGQRDTTRALEETQVSLDERRQQDGSSLQALSGRVAVLAQAVEAHQVEAEQARADASRLRSKLRALGDEVSTLRATKGEFRREIRQLHSSFSALLEDALRHEAVLTALFGEEVMEEMSEEEPGPLPLSYEQIRVALQDAASGLQEQSLGWDALAAGWQLWSRRRGAASRPSAWSPAGTRLQRRPAGRTLLGWLRRSSA", "length": 652, "header": "tr|F1SEN6-1|F1SEN6_PIG Computationally mapped isoform of Multimerin 2 OS=Sus scrofa OX=9823 GN=MMRN2 PE=1 SV=4 CANONICAL=A0A5G2Q7Y9-1" }, "locus": { "chromosome": "14", "start_pos": 87916294, "end_pos": 87904560, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011345.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011345.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011051.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011051.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5173105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173105", "resource": "Reactome", "description": "O-linked glycosylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of cell migration involved in sprouting angiogenesis", "id": "GO:0090051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090051", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis", "id": "GO:1903588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903588", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "negative regulation of vascular endothelial growth factor receptor signaling pathway", "id": "GO:0030948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030948", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "positive regulation of defense response to bacterium", "id": "GO:1900426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900426", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "cell migration involved in sprouting angiogenesis", "id": "GO:0002042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002042", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "positive regulation of epithelial tube formation", "id": "GO:1905278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905278", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "angiogenesis", "id": "GO:0001525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q7Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 752, "end_pos": 754, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2Q7Y9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 929, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2Q7Y9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2Q7Y9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2Q7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" }, { "id": "PS50871", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50871" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C1q", "eco_id": "ECO_0000259", "start_pos": 800, "end_pos": 929, "start_aa": "Trp", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2Q7Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Y9" }, { "id": "PS51041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EMI", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 127, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 197, "end_pos": 199 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 240, "end_pos": 242 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 714, "end_pos": 716 }, { "start_pos": 752, "end_pos": 754 }, { "start_pos": 824, "end_pos": 826 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QBZ0-1", "uniprot_ac": "A0A5G2QBZ0", "uniprot_id": "A0A5G2QBZ0_PIG", "mass": { "chemical_mass": 21718.0, "monoisotopic_mass": 21718.0 }, "refseq": {}, "gene_names": [ { "name": "DRAP1", "type": "recommended", "evidence": [ { "id": "A0A5G2QBZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ] } ], "protein_names": [ { "name": "Dr1-associated corepressor", "type": "recommended", "evidence": [ { "id": "A0A5G2QBZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0/entry#names_and_taxonomy" } ] }, { "name": "Dr1-associated protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QBZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0/entry#names_and_taxonomy" } ] }, { "name": "Negative cofactor 2-alpha", "type": "synonym", "evidence": [ { "id": "A0A5G2QBZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DRAP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0", "locus": { "chromosome": "2", "start_pos": 6409655, "end_pos": 6412395, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012965", "url": "https://www.ensembl.org/id/ENSSSCG00000012965" } ] } } ], "crossref": [ { "id": "A0A5G2QBZ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBZ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012965", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012965", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22906", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22906", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525028", "url": "https://www.ncbi.nlm.nih.gov/gene/100525028", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QPE2", "url": "https://www.orthodb.org/?gene=A0A5G2QPE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10252:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10252:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00808", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00808", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU28", "url": "https://www.uniprot.org/uniprotkb/F1RU28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU28-1", "url": "https://www.uniprot.org/uniprotkb/F1RU28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IGNASSLPLPQARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRGRKPGGGSRKNGGMGSKGKDKKLSGTDSEQEDESEDTDTDGEEETSQAPSQASQPPAHFQSPPTPFTPFTSTLPLPPAPQVPAAPDAEDEEDYDS", "length": 202, "header": "tr|A0A5G2QBZ0-1|A0A5G2QBZ0_PIG Isoform 1 of Dr1-associated corepressor OS=Sus scrofa OX=9823 GN=DRAP1 PE=1 SV=2 CANONICAL=A0A5G2QBZ0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0/entry", "sequence": { "sequence": "IGNASSLPLPQARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRGRKPGGGSRKNGGMGSKGKDKKLSGTDSEQEDESEDTDTDGEEETSQAPSQASQPPAHFQSPPTPFTPFTSTLPLPPAPQVPAAPDAEDEEDYDS", "length": 202, "header": "tr|A0A5G2QBZ0-1|A0A5G2QBZ0_PIG Isoform 1 of Dr1-associated corepressor OS=Sus scrofa OX=9823 GN=DRAP1 PE=1 SV=2 CANONICAL=A0A5G2QBZ0-1" }, "locus": { "chromosome": "2", "start_pos": 6411969, "end_pos": 6409733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078527.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078527.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062048.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062048.2" } ] } }, { "isoform_ac": "A0A5G2QPE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPE2/entry", "sequence": { "sequence": "MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRWGVSVHVGKAKAPGVGGVLGDGRGVGRPLGRWTPPSRRGRKPGGGSRKNGGMGSKGKDKKLSGTDSEQEDESEDTDTDGEEETSQAPSQASQPPAHFQSPPTPFTPFTSTLPLPPAPQVPAAPDAEDEEDYDS", "length": 243, "header": "tr|A0A5G2QPE2-1|A0A5G2QPE2_PIG Computationally mapped isoform of Dr1-associated corepressor OS=Sus scrofa OX=9823 GN=DRAP1 PE=1 SV=1 CANONICAL=A0A5G2QBZ0-1" }, "locus": { "chromosome": "2", "start_pos": 6411654, "end_pos": 6409733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082299.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082299.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060157.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060157.1" } ] } }, { "isoform_ac": "A0A8W4FBJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBJ4/entry", "sequence": { "sequence": "ISLPLPQARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRWGVSVHVGKAKAPGVGGVLGDGRGVGRPLGRWTPPSRRGRKPGGGSRKNGGMGSKGKDKKLSGTDSEQEDESEDTDTDGEEETSQAPSQASQPPAHFQSPPTPFTPFTSTLPLPPAPQVPAAPDAEDEEDYDS", "length": 236, "header": "tr|A0A8W4FBJ4-1|A0A8W4FBJ4_PIG Computationally mapped isoform of Dr1-associated corepressor OS=Sus scrofa OX=9823 GN=DRAP1 PE=1 SV=1 CANONICAL=A0A5G2QBZ0-1" }, "locus": { "chromosome": "2", "start_pos": 6412395, "end_pos": 6409733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092572.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092572.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076637.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076637.1" } ] } }, { "isoform_ac": "F1RU28-1", "url": "https://www.uniprot.org/uniprotkb/F1RU28/entry", "sequence": { "sequence": "MPSKKKKYNARFPPVSTWPASGGTSRALGRLRPRPGQGGGRIAPFGGPDAPPPSVPSPRRCPPPPSSRDAPSLCPPPRAPFRGPRRRGPSSLPLPQARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGPRRGRKPGGGSRKNGGMGSKGKDKKLSGTDSEQEDESEDTDTDGEEETSQAPSQASQPPAHFQSPPTPFTPFTSTLPLPPAPQVPAAPDAEDEEDYDS", "length": 287, "header": "tr|F1RU28-1|F1RU28_PIG Computationally mapped isoform of Dr1-associated corepressor OS=Sus scrofa OX=9823 GN=DRAP1 PE=1 SV=2 CANONICAL=A0A5G2QBZ0-1" }, "locus": { "chromosome": "2", "start_pos": 6411654, "end_pos": 6409733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014172.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014172.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013786.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013786.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "transcription by RNA polymerase II", "id": "GO:0006366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006366", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "core promoter sequence-specific DNA binding", "id": "GO:0001046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001046", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor activity", "id": "GO:0016251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016251", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor binding", "id": "GO:0001091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001091", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulator complex", "id": "GO:0090575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090575", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" }, { "name": "negative cofactor 2 complex", "id": "GO:0017054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017054", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QBZ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 202, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QBZ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QBZ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QBZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBZ0" }, { "id": "PF00808", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00808" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcription factor CBF/NF-Y/archaeal histone", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 71, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QFL2-1", "uniprot_ac": "A0A5G2QFL2", "uniprot_id": "A0A5G2QFL2_PIG", "mass": { "chemical_mass": 19167.0, "monoisotopic_mass": 19167.0 }, "refseq": {}, "gene_names": [ { "name": "CPPED1", "type": "recommended", "evidence": [ { "id": "A0A5G2QFL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ] } ], "protein_names": [ { "name": "Calcineurin like phosphoesterase domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QFL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Protein phosphatase that dephosphorylates AKT family kinase specifically at 'Ser-473', blocking cell cycle progression and promoting cell apoptosis. May play an inhibitory role in glucose uptake by adipocytes.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGA7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGA7#function" }, { "database": "UniProtKB", "id": "ARBA00024771", "url": "https://www.uniprot.org/uniprotkb/ARBA00024771#function" }, { "database": "UniProtKB", "id": "A0A5G2QI52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI52#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPPED1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2", "locus": { "chromosome": "3", "start_pos": 30489143, "end_pos": 30362646, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024206", "url": "https://www.ensembl.org/id/ENSSSCG00000024206" } ] } } ], "crossref": [ { "id": "A0A5G2QFL2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024206", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024206", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07395", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07395", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627178", "url": "https://www.ncbi.nlm.nih.gov/gene/100627178", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627178", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627178", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEPTHET", "url": "https://omabrowser.org/oma/group/NEPTHET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QI52", "url": "https://www.orthodb.org/?gene=A0A5G2QI52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43143:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43143:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "20629", "url": "https://www.rhea-db.org/rhea/20629", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGA7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGVKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELSEKGIDDDLLDLMKEK", "length": 172, "header": "tr|A0A5G2QFL2-1|A0A5G2QFL2_PIG Isoform 1 of Calcineurin like phosphoesterase domain containing 1 OS=Sus scrofa OX=9823 GN=CPPED1 PE=1 SV=1 CANONICAL=A0A5G2QFL2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2/entry", "sequence": { "sequence": "MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGVKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELSEKGIDDDLLDLMKEK", "length": 172, "header": "tr|A0A5G2QFL2-1|A0A5G2QFL2_PIG Isoform 1 of Calcineurin like phosphoesterase domain containing 1 OS=Sus scrofa OX=9823 GN=CPPED1 PE=1 SV=1 CANONICAL=A0A5G2QFL2-1" }, "locus": { "chromosome": "3", "start_pos": 30484020, "end_pos": 30362749, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067834.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067834.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063006.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063006.1" } ] } }, { "isoform_ac": "A0A5G2QI52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI52/entry", "sequence": { "sequence": "MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELSEKGIDDDLLDLMKEK", "length": 313, "header": "tr|A0A5G2QI52-1|A0A5G2QI52_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase CPPED1 OS=Sus scrofa OX=9823 GN=CPPED1 PE=1 SV=1 CANONICAL=A0A5G2QFL2-1" }, "locus": { "chromosome": "3", "start_pos": 30484020, "end_pos": 30362749, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079552.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079552.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064475.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064475.1" } ] } }, { "isoform_ac": "A0A8W4FGA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGA7/entry", "sequence": { "sequence": "SVEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELSEKGIDDDLLDLMKEK", "length": 290, "header": "tr|A0A8W4FGA7-1|A0A8W4FGA7_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase CPPED1 OS=Sus scrofa OX=9823 GN=CPPED1 PE=1 SV=1 CANONICAL=A0A5G2QFL2-1" }, "locus": { "chromosome": "3", "start_pos": 30484020, "end_pos": 30385647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099953.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099953.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078275.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078275.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627178", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627178", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PJC6-1", "protein_name": "Serine/threonine-protein phosphatase CPPED1", "gene_name": "CPPED1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSVMAAVGDVFRRARGRTLTAFRQGDEYQWKGPFYFIQGADPQFGLIKAWAVGNTGSGDDEWGEEIKLTEQAVQAINKLNPKPKFFVLCGDLIHGMPGTQWRKDQEQDLKNVLKNTDQDIPLVFVSGNHDIGNTPTRETIDNYCKSWGDDYFSFWVGGVFFLVLNSQLYFDSSKCPELKQAQDAWLNGQLAAAEKRKCKHIIVFQHIPLFLRKPDEDHDYFNLEKSVRQEIMEKFQNAGVKAVFSGHYHRNAGGWYRGLEMVVSSAIGCQLGEDKHGLRVVLVTDEKIVHRYYSLDELSSQGLEKEMVDMLAKQN", "length": 315 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3L7HBF4-1", "protein_name": "Serine/threonine-protein phosphatase CPPED1", "gene_name": "Cpped1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSFAEAGDVFHRARGRTLDAFSSEKEKEWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDEWEQEIRLTEKAVEAINKLSPKPKFFVLCGDLIHAMPGTPWQKEQTKDLQQVLKAVHKDIPLVFVSGNHDLGNVPTAETVKDFCQTWGDDYFSFWVGGVLFLVLNSQFFYDASKCPALKQAQDRWLDQQLSIAGQQRCQHAIVFQHIPLFLQSIDEEDDYFNLTKAVRKELADKFTRAGIKAVFSGHYHRNAGGTYQDLDMVVSSAIGCQLGKDTHGLRVVVITAEKIIHRYYSLDELNKRGIDDDLKELMKE", "length": 312 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SWY4-1", "protein_name": "Calcineurin like phosphoesterase domain containing 1", "gene_name": "CPPED1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTAEAGGVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWATGDCDNGGDEWEQEIRLAEQAVQAINKLNPKPKFFVLCGDLVHAMPGVKAVFSGHYHRNAGGTYRNLDMVVSSAIGCQLGTDTHGLRVVVVTAEKITHRYYSLDELSEKGIEDDLMDLLKEN", "length": 172 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66H71-1", "protein_name": "Serine/threonine-protein phosphatase CPPED1", "gene_name": "Cpped1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAAGAADVFHRARGRTLDAFSSEKEREWTGPFYFVQGADPQFGLMKAWSTGNCDNGGDEWGQEIRLTEQAVEAINKLNPKPKFFVLCGDLVHAMPGTRWRKEQTRDLQRVLKVVDQDIPLVLVSGNHDLGNAPTAETVEEFCQTWGDDYFSFWVGGALFLVLNSQFLYDASKCPALKQAQDHWLDQQLSIAEQQQCQHAIVFQHIPLFLKSIDEDDDYFNLTKTVRQELADKFTRAGIRAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGKDTHGLRVVVVTAEKIVHRYYSLDELSKRGLDDDLRELLKE", "length": 312 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BFS6-1", "protein_name": "Serine/threonine-protein phosphatase CPPED1", "gene_name": "Cpped1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAMEAADVFHRARGRTLDAFSSEKEREWKGPFYFVQGADTQFGLMKAWSTGNCDAGGDEWGQEIRLTEQAVEAINKLNPKPKFFVLCGDLVHAMPGTPWRQEQTRDLQRVLKAVDQDIPLVMVSGNHDLGNAPTAETVEEFCQTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQAQDHWLDQQLNIAEQKQCQHAIVFQHIPLFLQSIDEDDDYFNLTKTVRKELAEKLTRAGIRAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGKDTHGLRVVAITAEKIVHRYYSLDELSQGGVEEDLKELLKE", "length": 312 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRF8-1", "protein_name": "Serine/threonine-protein phosphatase CPPED1", "gene_name": "CPPED1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDEWEQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGKPWRTEQTEDLKRVLRAVDRAIPLVLVSGNHDIGNTPTAETVEEFCRTWGDDYFSFWVGGVLFLVLNSQFYENPSKCPSLKQAQDQWLDEQLSIARQRHCQHAIVFQHIPLFLESIDEDDDYYFNLSKSTRKKLADKFIHAGVKVVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDPHGLRVVVVTAEKIVHRYYSLDELSEKGIEDDLMDLIKKK", "length": 314 }, "evidence": [ { "id": "A0A5G2QFL2", "url": "https://omabrowser.org/oma/group/A0A5G2QFL2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20629", "name": "", "equation": "O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20629", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20629" } ] }, { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] }, { "id": "R-SSC-6798751", "name": "Exocytosis of azurophil granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, azurophil granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798751", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798751" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QFL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 172, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QFL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QFL2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QES5-1", "uniprot_ac": "A0A5G2QES5", "uniprot_id": "A0A5G2QES5_PIG", "mass": { "chemical_mass": 52104.0, "monoisotopic_mass": 52104.0 }, "refseq": {}, "gene_names": [ { "name": "ARFGAP3", "type": "recommended", "evidence": [ { "id": "A0A5G2QES5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ] } ], "protein_names": [ { "name": "ADP-ribosylation factor GTPase-activating protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QES5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5#function" }, { "database": "UniProtKB", "id": "ARBA00037105", "url": "https://www.uniprot.org/uniprotkb/ARBA00037105#function" }, { "database": "UniProtKB", "id": "A0A5G2QPF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF4#function" }, { "database": "UniProtKB", "id": "A0A5G2QYF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF9#function" }, { "database": "UniProtKB", "id": "F1SJR4", "url": "https://www.uniprot.org/uniprotkb/F1SJR4#function" }, { "database": "UniProtKB", "id": "A0A286ZSS1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSS1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARFGAP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5", "locus": { "chromosome": "5", "start_pos": 6055091, "end_pos": 5994174, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000037", "url": "https://www.ensembl.org/id/ENSSSCG00000000037" } ] } } ], "crossref": [ { "id": "A0A5G2QES5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000037", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000037", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09028", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09028", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523962", "url": "https://www.ncbi.nlm.nih.gov/gene/100523962", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ENGPSKV", "url": "https://omabrowser.org/oma/group/ENGPSKV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45686", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45686", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45686:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45686:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZSS1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QES5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJR4", "url": "https://www.uniprot.org/uniprotkb/F1SJR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPSSPPPKEEDFFASHASPEGSVPGWASAPPEPSSLTLRNVDTPPANSEGGAEQGPSVEGLNVPTKAALEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRYFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 474, "header": "tr|A0A5G2QES5-1|A0A5G2QES5_PIG Isoform 1 of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=1 CANONICAL=A0A5G2QES5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSS1/entry", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPSSPPPKEEDFFASHASPEGSVPGWASAPPEPSSLTLRNVDTPPANSEGGAEQGPSVEGLNVPTKAALEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIVSSLRLAYKDLEIQMKKEEKMNMSGQKKVESERLGMGFGNCRSGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 473, "header": "tr|A0A286ZSS1-1|A0A286ZSS1_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=1 CANONICAL=A0A5G2QES5-1" }, "locus": { "chromosome": "5", "start_pos": 6049476, "end_pos": 5994277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044776.1", "url": "https://www.ensembl.org/id/ENSSSCT00000044776.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034522.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034522.1" } ] } }, { "isoform_ac": "A0A5G2QES5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5/entry", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPSSPPPKEEDFFASHASPEGSVPGWASAPPEPSSLTLRNVDTPPANSEGGAEQGPSVEGLNVPTKAALEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRYFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 474, "header": "tr|A0A5G2QES5-1|A0A5G2QES5_PIG Isoform 1 of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=1 CANONICAL=A0A5G2QES5-1" }, "locus": { "chromosome": "5", "start_pos": 6049476, "end_pos": 5994277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073891.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073891.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060531.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060531.1" } ] } }, { "isoform_ac": "A0A5G2QPF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF4/entry", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPSSPPPKEEDFFASHASPEGAEQGPSVEGLNVPTKAALEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIVSSLRLAYKDLEIQMKKEEKMNMSGQKKVESERLGMGFGNCRSGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRYFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 487, "header": "tr|A0A5G2QPF4-1|A0A5G2QPF4_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=2 CANONICAL=A0A5G2QES5-1" }, "locus": { "chromosome": "5", "start_pos": 6049476, "end_pos": 5994277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074631.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074631.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066580.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066580.2" } ] } }, { "isoform_ac": "A0A5G2QYF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF9/entry", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASALWLDSCVVPPSSPPPKEEDFFASHASPEGAEQGPSVEGLNVPTKAALEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIVSSLRLAYKDLEIQMKKEEKMNMSGQKKVESERLGMGFGNCRSGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRYFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 443, "header": "tr|A0A5G2QYF9-1|A0A5G2QYF9_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=2 CANONICAL=A0A5G2QES5-1" }, "locus": { "chromosome": "5", "start_pos": 6049476, "end_pos": 5994277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088200.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088200.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066981.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066981.2" } ] } }, { "isoform_ac": "F1SJR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR4/entry", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCATNDTNAKYNSRAAQLYRERIKSLASQATRKHGTDLWLDSCVVPPSSPPPKEEDFFASHASPEGSVPGWASAPPEPSSLTLRNVDTPPANSEEVSSIIKKKPNQARRGLGAKKGSLGAQKLANTSFNEIEKQAQAVDKMKEQEDLLARTASKEESIVSSLRLAYKDLEIQMKKEEKMNMSGQKKVESERLGMGFGNCRSGISHSVTSDMQTIEQETPVVAKPRKKYSDDNDDSYFTSTSRYFDEPMELRSSSFSSWDDSSDSYWKKETIKDTDPTLKTTGYTDRPAARRKPDHEPVDDTDEAQKKFGNVKAISSDMYFGRQAQADYETRARLERFSASSSISSADLFEEQRKQTAGNYNLTSVLPTAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 497, "header": "tr|F1SJR4-1|F1SJR4_PIG Computationally mapped isoform of ADP-ribosylation factor GTPase-activating protein 3 OS=Sus scrofa OX=9823 GN=ARFGAP3 PE=4 SV=4 CANONICAL=A0A5G2QES5-1" }, "locus": { "chromosome": "5", "start_pos": 6049476, "end_pos": 5994277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000039.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000039.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000039.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000039.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A8JNX0-1", "protein_name": "ADP-ribosylation factor GTPase activating protein 3, isoform H", "gene_name": "ArfGAP3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASPAAGPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNCSTTDAQVKYNSRAAQLYRDKLCAQAQQAMKTHGTKLHLEQTDKSEGNEAAREEDFFAQCDNEVDFNVQNNNVSKQDPNPPTVAPVISVETQQGGAPSVNLLNSVVPAAVPSSIGARKVQPKKGGLGARKVGGLGATKVKTNFADIEARANAANEMKTSAAAAPVVKPQTAEDELETVASMRLAYQELSMQKTREEAKLKTMDPAKAKQMERLGMGFNLRGSDMAHSALGDMETIQQSAAPKAKLSLLESENFFTDFSLYGNSSSGGGGGGSSEKRESSVGGTSKLDKFELDALGYETIEPIGGSHSNITSMFSRSNDYDKPKTSAPVKKNSGSSQTHTKGGTSTDPVIAQQKFGNSKGFGSDQYFASEQSSADVSASLNRFQGSRAISSSDYFGDGSPGGTGGNRASSVNFSAPDLDVESVKESVRQGVHKVAGRLSNLANDVMTSWQDKYGY", "length": 553 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "G3HXT1-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 3", "gene_name": "Arfgap3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGDPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATNDTNAKYNSRAAQLYREKVKSLATQATRKHGTDLWLDSCAAPPVSPPPKEEDFFAAHASQEVSGAVQVSAKPEPAPLMPWAVETTPEKNEGGPEQGPSVEGLNAPGKAAVEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNASFTEIEKQAQAVDKRKEQEGLARGAPKEESIVSSLRLAYKDLEIHTKKDEKLNLSGQKKVEAERLGMGFGSSRSGISHSVTSDMQTIEQESPTLAKPRRKYQEDPEESYFTSSSSRYFDDPMELRGNSFSSWDDSADSYWKKDSSRDPEPAMKSTGSSDRSSARWKPDYEPVGNTDEAQKKFGNVKAISSDMYFGRQAQADFETRARLERLSTSSSISSADLFDEQRKQAAGNYNLSNVLPNAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 517 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4KLN7-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 3", "gene_name": "Arfgap3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCATKDTNAKYNSRAAQLYREKIKTLATQATRRHGTDLWLDSCAAPPASPPPKEEDFFASHASLEVSGATQASAQPEPASSTPWGLETTPEKHEGGPGQGPSVEGLNTPGKTAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQEDLARGTPKEESIVSSLRLAYKDLEIHKKQDERLNLSGQKKAEAERLGMGFGSCRGGISHSVTSDMQTIEQESPTLAKPRRKYQEDPEDSYFSSSSKWSEQSSSRYFDDPMELRSSHFSSWDDSADSYWKKDSSRDPEPATKSTGSSDRPSSRRKPEYEPVGNTDEAQKKFGNVKAISSDMYFGIQSQTDFETRARLERLSTSSSISSADLFDEQRKQTTGNYNLSNVLPNAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 525 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D8S3-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 3", "gene_name": "Arfgap3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDPSKQDILAIFKRLRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNSNASSFFHQHGCATKDTNAKYNSRAAQLYREKIKTLATQATRRHGTDLWLDSCAAPPVSPPPKEEDFFASHASLEVSGAMQASAQPESASSTPWGLETTPEKHEGGPGQGPSVEGLNTPGKAAPEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQEDLARGAPKEESIVSSLRLAYKDLEISRKKDERLNLSGQKKVEAERLGMGFGSCRSGISHSVTSDMQTIEQESPTLAKPRRKYQEDPEDSYFSSSSKWSEQSSRYFDDPMELRSSSFSSWDDGADSYWKKDSSRDPEPAMRSTGSSDRPSARRKPEYEPIGSTDEAQKKFGNVKAISSDMYFGIQAQTDFETRARLERLSTSSSISSADLFDEQRKQTAGNYNLSNVLPNAPDMAQFKQGVRSVAGKLSVFANGVMTSIQDRYGS", "length": 523 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FIQ0-1", "protein_name": "Probable ADP-ribosylation factor GTPase-activating protein AGD9", "gene_name": "AGD9", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATENLTDKNVVFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYRQTLAKEVAKAMAEETVLPSLSSVATSQPVESSENGFTSESPKESSLKQEAAVVSSPKASQKVVASTFKKPLVSRKSGKTGGLGARKLTTKSKDNLYEQKPEEPVPVIPAASPTNDTSAAGSSFASRFEYFDDEQSGGQSGTRVLSHVAPPKSSNFFNEFGMDSAFPKKSSSSSSKAQVEETDEARKKFSNAKSISSAQFFGNQNRDADLDSKATLQKFSGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML", "length": 402 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NP61-1", "protein_name": "ADP-ribosylation factor GTPase-activating protein 3", "gene_name": "ARFGAP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSCVVPPLSPPPKEEDFFASHVSPEVSDTAWASAIAEPSSLTSRPVETTLENNEGGQEQGPSVEGLNVPTKATLEVSSIIKKKPNQAKKGLGAKKGSLGAQKLANTCFNEIEKQAQAADKMKEQEDLAKVVSKEESIVSSLRLAYKDLEIQMKKDEKMNISGKKNVDSDRLGMGFGNCRSVISHSVTSDMQTIEQESPIMAKPRKKYNDDSDDSYFTSSSSYFDEPVELRSSSFSSWDDSSDSYWKKETSKDTETVLKTTGYSDRPTARRKPDYEPVENTDEAQKKFGNVKAISSDMYFGRQSQADYETRARLERLSASSSISSADLFEEPRKQPAGNYSLSSVLPNAPDMAQFKQGVRSVAGKLSVFANGVVTSIQDRYGS", "length": 516 }, "evidence": [ { "id": "A0A5G2QES5", "url": "https://omabrowser.org/oma/group/A0A5G2QES5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" }, { "name": "COPI coating of Golgi vesicle", "id": "GO:0048205", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048205", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" }, { "name": "protein secretion", "id": "GO:0009306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009306", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QES5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QES5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 474, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QES5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QES5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QES5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QES5" }, { "id": "PS50115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arf-GAP", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 126, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 84, "end_pos": 86 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNL0-1", "uniprot_ac": "A0A5G2QNL0", "uniprot_id": "A0A5G2QNL0_PIG", "mass": { "chemical_mass": 88333.0, "monoisotopic_mass": 88333.0 }, "refseq": {}, "gene_names": [ { "name": "BCL11B", "type": "recommended", "evidence": [ { "id": "A0A5G2QNL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ] } ], "protein_names": [ { "name": "BCL11 transcription factor B", "type": "synonym", "evidence": [ { "id": "A0A5G2QNL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BCL11B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0", "locus": { "chromosome": "7", "start_pos": 120205008, "end_pos": 120295936, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002507", "url": "https://www.ensembl.org/id/ENSSSCG00000002507" } ] } } ], "crossref": [ { "id": "A0A5G2QNL0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002507", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002507", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45993", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45993", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45993:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45993:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25491", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25491", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9933946", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933946", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QG38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAQ5", "url": "https://www.uniprot.org/uniprotkb/F1SAQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRKQGNPQHLSQRELITPEPDHVEAAILEEDEGLEIEEPSGLGLMVAGPDPDLLTCGQCQMNFPLGDILVFIEHKKKQCGGSLGACYDKGLDKGSPPPSSRSELRKVSEPVEIGIQVTPDEDDHLLSPTKGICPKQENMAGKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASSSLTPRLTIPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPGGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELAGEGLKAADGDFRHHESDPSLGHEPEEEDEEEEEEEEELLLENESRPESSFSMDSELSRNRENGGGGGGVAGVPGAGGAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGDPGDDDDAGGCGDAGPGGAVNGRGGGFAPGAEPFPGLFPRKPAPLPSPGLNSAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS", "length": 822, "header": "tr|A0A5G2QNL0-1|A0A5G2QNL0_PIG Isoform 1 of BCL11 transcription factor B OS=Sus scrofa OX=9823 GN=BCL11B PE=4 SV=1 CANONICAL=A0A5G2QNL0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG38/entry", "sequence": { "sequence": "MSRRKQGNPQHLSQRELITRKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASSSLTPRLTIPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPGGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELAGEGLKAADGDFRHHESDPSLGHEPEEEDEEEEEEEEELLLENESRPESSFSMDSELSRNRENGGGGGGVAGVPGAGGAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGDPGDDDDAGGCGDAGPGGAVNGRGGGFAPGAEPFPGLFPRKPAPLPSPGLNSAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS", "length": 699, "header": "tr|A0A5G2QG38-1|A0A5G2QNL0_PIG Computationally mapped isoform of BCL11 transcription factor B OS=Sus scrofa OX=9823 GN=BCL11B PE=4 SV=1 CANONICAL=A0A5G2QNL0-1" }, "locus": { "chromosome": "7", "start_pos": 120295737, "end_pos": 120205011, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088847.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088847.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062746.1" } ] } }, { "isoform_ac": "A0A5G2QNL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0/entry", "sequence": { "sequence": "MSRRKQGNPQHLSQRELITPEPDHVEAAILEEDEGLEIEEPSGLGLMVAGPDPDLLTCGQCQMNFPLGDILVFIEHKKKQCGGSLGACYDKGLDKGSPPPSSRSELRKVSEPVEIGIQVTPDEDDHLLSPTKGICPKQENMAGKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASSSLTPRLTIPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPGGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELAGEGLKAADGDFRHHESDPSLGHEPEEEDEEEEEEEEELLLENESRPESSFSMDSELSRNRENGGGGGGVAGVPGAGGAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGDPGDDDDAGGCGDAGPGGAVNGRGGGFAPGAEPFPGLFPRKPAPLPSPGLNSAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS", "length": 822, "header": "tr|A0A5G2QNL0-1|A0A5G2QNL0_PIG Isoform 1 of BCL11 transcription factor B OS=Sus scrofa OX=9823 GN=BCL11B PE=4 SV=1 CANONICAL=A0A5G2QNL0-1" }, "locus": { "chromosome": "7", "start_pos": 120295737, "end_pos": 120205011, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080767.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080767.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059896.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059896.1" } ] } }, { "isoform_ac": "F1SAQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ5/entry", "sequence": { "sequence": "MSRRKQGNPQHLSQRELITPEPDHVEAAILEEDEGLEIEEPSGLGLMVAGPDPDLLTCGQCQMNFPLGDILVFIEHKKKQCGGSLGACYDKGLDKGSPPPSSRSELRKVSEPVEIGIQVTPDEDDHLLSPTKGICPKQENMAGPCRPAQPPAMAPIAASSSHPHTSVITSPLRALGALPCCSARPVSGDGTQGEGQTEAPFGCQCQLSGKDEPSSYICTTCKQPFNSAWFLLQHAQNTHGFRIYLEPGPASSSLTPRLTIPPPLGPEAVAQSPLMNFLGDSNPFNLLRMTGPILRDHPGFGEGRLPGTPPLFSPPPRHHLDPHRLSAEEMGLVAQHPSAFDRVMRLNPMAIDSPAMDFSRRLRELAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPGGTPPPQPPAKSKSCEFCGKTFKFQSNLIVHRRSHTGEKPYKCQLCDHACSQASKLKRHMKTHMHKAGSLAGRSDDGLSAASSPEPGTSELAGEGLKAADGDFRHHESDPSLGHEPEEEDEEEEEEEEELLLENESRPESSFSMDSELSRNRENGGGGGGVAGVPGAGGAAKALADEKALVLGKVMENVGLGALPQYGELLADKQKRGAFLKRAAGGDPGDDDDAGGCGDAGPGGAVNGRGGGFAPGAEPFPGLFPRKPAPLPSPGLNSAAKRIKVEKDLELPPAALIPSENVYSQWLVGYAASRHFMKDPFLGFTDARQSPFATSSEHSSENGSLRFSTPPGDLLDGGLSGRSGTASGGSTPHLGGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACAQSSKLTRHMKTHGQIGKEVYRCDICQMPFSVYSTLEKHMKKWHGEHLLTNDVKIEQAERS", "length": 888, "header": "tr|F1SAQ5-1|A0A5G2QNL0_PIG Computationally mapped isoform of BCL11 transcription factor B OS=Sus scrofa OX=9823 GN=BCL11B PE=4 SV=4 CANONICAL=A0A5G2QNL0-1" }, "locus": { "chromosome": "7", "start_pos": 120295737, "end_pos": 120205011, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002785.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002785.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002714.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002714.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ5", "url": "https://www.uniprot.org/uniprotkb/F1SAQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9933946", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933946", "resource": "Reactome", "description": "Formation of the embryonic stem cell BAF (esBAF) complex" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "hematopoietic stem cell migration", "id": "GO:0035701", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035701", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "lymphoid lineage cell migration into thymus", "id": "GO:0097535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097535", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "SWI/SNF complex", "id": "GO:0016514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016514", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 675, "end_pos": 677, "annotation": "n_glycosylation_sequon" }, { "start_pos": 735, "end_pos": 737, "annotation": "n_glycosylation_sequon" }, { "start_pos": 738, "end_pos": 740, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNL0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 822, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNL0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNL0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 173, "start_aa": "Tyr", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 675, "end_pos": 677 }, { "start_pos": 735, "end_pos": 737 }, { "start_pos": 738, "end_pos": 740 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPV8-1", "uniprot_ac": "A0A5G2QPV8", "uniprot_id": "A0A5G2QPV8_PIG", "mass": { "chemical_mass": 18294.0, "monoisotopic_mass": 18294.0 }, "refseq": {}, "gene_names": [ { "name": "SERF2", "type": "recommended", "evidence": [ { "id": "A0A5G2QPV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8" } ] } ], "protein_names": [ { "name": "Small EDRK-rich factor 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QPV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Positive regulator of amyloid protein aggregation and proteotoxicity. Induces conformational changes in amyloid proteins, such as HTT, driving them into compact formations preceding the formation of aggregates.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8#function" }, { "database": "UniProtKB", "id": "ARBA00045391", "url": "https://www.uniprot.org/uniprotkb/ARBA00045391#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SERF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8", "locus": { "chromosome": "1", "start_pos": 127761345, "end_pos": 127767520, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024263", "url": "https://www.ensembl.org/id/ENSSSCG00000024263" } ] } } ], "crossref": [ { "id": "A0A5G2QPV8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024263", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024263", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13596", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13596", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13596:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13596:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13596:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13596:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04419", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04419", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VB23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VB23-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LS25", "url": "https://www.uniprot.org/uniprotkb/I3LS25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LS25-1", "url": "https://www.uniprot.org/uniprotkb/I3LS25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRVGIQPHAEFCPIHFHLILCALHPPASCPFCPLVPPSAPSSLPPGTRRSCSRSRKRQTRRRRNPSSFVASCPTLLPFACVPGASPTTLAFSPVVLTGPSTDGIPFALSLQRVPFVLPSPQVASLPLGHSWG", "length": 169, "header": "tr|A0A5G2QPV8-1|A0A5G2QPV8_PIG Isoform 1 of Small EDRK-rich factor 2 OS=Sus scrofa OX=9823 GN=SERF2 PE=3 SV=1 CANONICAL=A0A5G2QPV8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VB23-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB23/entry", "sequence": { "sequence": "MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQSAITPSWNFLCSAYVYLPILSPPKEYTQTYYAAVLAGWWGSGGGPAAQPVAGGRWQFLHILGTQPQSH", "length": 106, "header": "tr|A0A4X1VB23-1|A0A5G2QPV8_PIG Computationally mapped isoform of Small EDRK-rich factor 2 OS=Sus scrofa OX=9823 GN=SERF2 PE=3 SV=1 CANONICAL=A0A5G2QPV8-1" }, "locus": { "chromosome": "1", "start_pos": 127767456, "end_pos": 127761348, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088612.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088612.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063596.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063596.1" } ] } }, { "isoform_ac": "A0A5G2QPV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8/entry", "sequence": { "sequence": "MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQRVGIQPHAEFCPIHFHLILCALHPPASCPFCPLVPPSAPSSLPPGTRRSCSRSRKRQTRRRRNPSSFVASCPTLLPFACVPGASPTTLAFSPVVLTGPSTDGIPFALSLQRVPFVLPSPQVASLPLGHSWG", "length": 169, "header": "tr|A0A5G2QPV8-1|A0A5G2QPV8_PIG Isoform 1 of Small EDRK-rich factor 2 OS=Sus scrofa OX=9823 GN=SERF2 PE=3 SV=1 CANONICAL=A0A5G2QPV8-1" }, "locus": { "chromosome": "1", "start_pos": 127767456, "end_pos": 127765842, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079036.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079036.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064104.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064104.1" } ] } }, { "isoform_ac": "I3LS25-1", "url": "https://www.uniprot.org/uniprotkb/I3LS25/entry", "sequence": { "sequence": "MTRGNQRELARQKNMKKQSDSVKGKRRDDGLSAAARKQSAPSSLPPGTRRSCSRSRKRQTRRRRNPSSFVASCPTLLPFACVPGASPTTLAFSPVVLTGPSTDGIPFALSLQRVPFVLPSPQVASLPLGHSWG", "length": 133, "header": "tr|I3LS25-1|I3LS25_PIG Computationally mapped isoform of Small EDRK-rich factor 2 OS=Sus scrofa OX=9823 GN=SERF2 PE=3 SV=3 CANONICAL=A0A5G2QPV8-1" }, "locus": { "chromosome": "1", "start_pos": 127767456, "end_pos": 127765842, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095908.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095908.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075240.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075240.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VB23", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VB23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPV8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV8" }, { "id": "PF04419", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04419" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small EDRK-rich factor-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 37, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPL8-1", "uniprot_ac": "A0A5G2QPL8", "uniprot_id": "A0A5G2QPL8_PIG", "mass": { "chemical_mass": 43007.0, "monoisotopic_mass": 43007.0 }, "refseq": {}, "gene_names": [ { "name": "SLAMF7", "type": "recommended", "evidence": [ { "id": "A0A5G2QPL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ] } ], "protein_names": [ { "name": "SLAM family member 7", "type": "synonym", "evidence": [ { "id": "A0A5G2QPL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLAMF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8", "locus": { "chromosome": "4", "start_pos": 89759872, "end_pos": 89785692, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006378", "url": "https://www.ensembl.org/id/ENSSSCG00000006378" } ] } } ], "crossref": [ { "id": "A0A5G2QPL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006378", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006378", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VSI8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VSI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VUY3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VUY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TN36", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TN36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1TN36-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TN36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHLISSLPAHRFFSHIGYHRILSRVPCAIQDSFKLSWFELEPLPQVRQTGYLLHLQQNQLSQEQGPAACGVLKKLVGAVGGSVTFPLNLSANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRNKERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEYELRVYEYLSKPKVTVGLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILPISLRREKRDMTFICLARNPISSNSSNPIFAWKLCKGTTGGLATSGIFSILLSFILLCFLALMLIILIIRRERRKASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHLKNTIPEENSLNTLYSTVQIPPKVEKPHSLPELPDTPGPFTYENII", "length": 385, "header": "tr|A0A5G2QPL8-1|A0A5G2QPL8_PIG Isoform 1 of SLAM family member 7 OS=Sus scrofa OX=9823 GN=SLAMF7 PE=4 SV=1 CANONICAL=A0A5G2QPL8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VSI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSI8/entry", "sequence": { "sequence": "MLASPACFILFLLCQLTEYLSKPKVTVGLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILPISLRREKRDMTFICLARNPISSNSSNPIFAWKLCKASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHLKNTIPEENSLNTLYSTVQIPPKVEKPHSLPELPDTPGPFTYENII", "length": 187, "header": "tr|A0A4X1VSI8-1|A0A5G2QPL8_PIG Computationally mapped isoform of SLAM family member 7 OS=Sus scrofa OX=9823 GN=SLAMF7 PE=4 SV=1 CANONICAL=A0A5G2QPL8-1" }, "locus": { "chromosome": "4", "start_pos": 89785667, "end_pos": 89771111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069066.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069066.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069587.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069587.1" } ] } }, { "isoform_ac": "A0A4X1VUY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUY3/entry", "sequence": { "sequence": "MLASPACFILFLLCQLTGPAACGVLKKLVGAVGGSVTFPLNLSANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRNKERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEYELRVYASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHLKNTIPEENSLNTLYSTVQIPPKVEKPHSLPELPDTPGPFTYENII", "length": 207, "header": "tr|A0A4X1VUY3-1|A0A5G2QPL8_PIG Computationally mapped isoform of SLAM family member 7 OS=Sus scrofa OX=9823 GN=SLAMF7 PE=4 SV=1 CANONICAL=A0A5G2QPL8-1" }, "locus": { "chromosome": "4", "start_pos": 89785667, "end_pos": 89771111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081319.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081319.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063319.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063319.1" } ] } }, { "isoform_ac": "A0A5G2QPL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8/entry", "sequence": { "sequence": "MLHLISSLPAHRFFSHIGYHRILSRVPCAIQDSFKLSWFELEPLPQVRQTGYLLHLQQNQLSQEQGPAACGVLKKLVGAVGGSVTFPLNLSANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRNKERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEYELRVYEYLSKPKVTVGLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILPISLRREKRDMTFICLARNPISSNSSNPIFAWKLCKGTTGGLATSGIFSILLSFILLCFLALMLIILIIRRERRKASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHLKNTIPEENSLNTLYSTVQIPPKVEKPHSLPELPDTPGPFTYENII", "length": 385, "header": "tr|A0A5G2QPL8-1|A0A5G2QPL8_PIG Isoform 1 of SLAM family member 7 OS=Sus scrofa OX=9823 GN=SLAMF7 PE=4 SV=1 CANONICAL=A0A5G2QPL8-1" }, "locus": { "chromosome": "4", "start_pos": 89785650, "end_pos": 89771111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075253.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075253.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064019.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064019.1" } ] } }, { "isoform_ac": "A0A8D1TN36-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1TN36/entry", "sequence": { "sequence": "MLASPACFILFLLCQLTGPAACGVLKKLVGAVGGSVTFPLNLSANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRNKERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEYELRVYEYLSKPKVTVGLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILPISLRREKRDMTFICLARNPISSNSSNPIFAWKLCKGTTGGLATSGIFSILLSFILLCFLALMLIILIIRRERRKASIEEKGGVGTHPEILSCSPPSGETLEYDTIPHLKNTIPEENSLNTLYSTVQIPPKG", "length": 315, "header": "tr|A0A8D1TN36-1|A0A8D1TN36_PIG Computationally mapped isoform of SLAM family member 7 OS=Sus scrofa OX=9823 GN=SLAMF7 PE=4 SV=1 CANONICAL=A0A5G2QPL8-1" }, "locus": { "chromosome": "4", "start_pos": 89785667, "end_pos": 89760613, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057707.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057707.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059003.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059003.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSI8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" }, { "name": "T cell activation", "id": "GO:0042110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042110", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPL8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 385, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPL8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPL8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL8" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 262, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 136, "end_pos": 138 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 193, "end_pos": 195 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ31-1", "uniprot_ac": "A0A5G2QQ31", "uniprot_id": "A0A5G2QQ31_PIG", "mass": { "chemical_mass": 8617.0, "monoisotopic_mass": 8617.0 }, "refseq": { "ac": "NP_001231649", "name": "small integral membrane protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649" }, "gene_names": [ { "name": "SMIM7", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31" } ] }, { "name": "C19orf42", "type": "synonym", "evidence": [ { "id": "NP_001231649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649" } ] }, { "name": "C2H19orf42", "type": "synonym", "evidence": [ { "id": "NP_001231649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649" } ] }, { "name": "SMIM7", "type": "synonym", "evidence": [ { "id": "NP_001231649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 7", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 7", "type": "synonym", "evidence": [ { "id": "NP_001231649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31", "locus": { "chromosome": "2", "start_pos": 60976497, "end_pos": 60961363, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013863", "url": "https://www.ensembl.org/id/ENSSSCG00000013863" } ] } } ], "crossref": [ { "id": "A0A5G2QQ31", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ31", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013863", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013863", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512765", "url": "https://www.ncbi.nlm.nih.gov/gene/100512765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512765", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LWNILVM", "url": "https://omabrowser.org/oma/group/LWNILVM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQ31", "url": "https://www.orthodb.org/?gene=A0A5G2QQ31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28622", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28622", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28622:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28622:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27938", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231649", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231649", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q935", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q935", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q935-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q935-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9W0", "url": "https://www.uniprot.org/uniprotkb/F1S9W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9W0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9W0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNVFMMFCMIVLFGS", "length": 75, "header": "tr|A0A5G2QQ31-1|A0A5G2QQ31_PIG Isoform 1 of Small integral membrane protein 7 OS=Sus scrofa OX=9823 GN=SMIM7 PE=3 SV=1 CANONICAL=A0A5G2QQ31-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q935-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q935/entry", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNVFMMFCMIVLKKSYALSVRAIIPILLFMNCETQ", "length": 95, "header": "tr|A0A5G2Q935-1|A0A5G2QQ31_PIG Computationally mapped isoform of Small integral membrane protein 7 OS=Sus scrofa OX=9823 GN=SMIM7 PE=3 SV=1 CANONICAL=A0A5G2QQ31-1" }, "locus": { "chromosome": "2", "start_pos": 60966481, "end_pos": 60961566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075498.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075498.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059797.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059797.1" } ] } }, { "isoform_ac": "A0A5G2QQ31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31/entry", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNVFMMFCMIVLFGS", "length": 75, "header": "tr|A0A5G2QQ31-1|A0A5G2QQ31_PIG Isoform 1 of Small integral membrane protein 7 OS=Sus scrofa OX=9823 GN=SMIM7 PE=3 SV=1 CANONICAL=A0A5G2QQ31-1" }, "locus": { "chromosome": "2", "start_pos": 60969691, "end_pos": 60961566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079653.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079653.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066830.1" } ] } }, { "isoform_ac": "F1S9W0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9W0/entry", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGSLAPELQIWNQEHSFSDAESLFLCS", "length": 66, "header": "tr|F1S9W0-1|F1S9W0_PIG Computationally mapped isoform of Small integral membrane protein 7 OS=Sus scrofa OX=9823 GN=SMIM7 PE=3 SV=4 CANONICAL=A0A5G2QQ31-1" }, "locus": { "chromosome": "2", "start_pos": 60969755, "end_pos": 60961566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015143.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015143.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014738.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014738.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q935", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q935" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512765", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512765", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7HBG1-1", "protein_name": "Small integral membrane protein 7 isoform X1", "gene_name": "Smim7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLRQHPGVPTEPEVLPDLHRPVECVHDAVHDCSVWLLRTQSSPAGCRGSVSVLMTSRMFHRKTRDFPRGLELIWMEIVHFPAT", "length": 104 }, "evidence": [ { "id": "A0A5G2QQ31", "url": "https://omabrowser.org/oma/group/A0A5G2QQ31/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3SZ97-1", "protein_name": "Small integral membrane protein 7", "gene_name": "SMIM7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNVFMMFCMIVLFGS", "length": 75 }, "evidence": [ { "id": "A0A5G2QQ31", "url": "https://omabrowser.org/oma/group/A0A5G2QQ31/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RKS2-1", "protein_name": "Small integral membrane protein 7", "gene_name": "Smim7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESKEPSTGDNIREFLLSLRYFRIFIALWNVFMMLCMIVLFGS", "length": 75 }, "evidence": [ { "id": "A0A5G2QQ31", "url": "https://omabrowser.org/oma/group/A0A5G2QQ31/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BQ49-1", "protein_name": "Small integral membrane protein 7", "gene_name": "SMIM7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESREPSTGDNIREFLLSLRYFRIFIALWNIFMMFCMIVLFGS", "length": 75 }, "evidence": [ { "id": "A0A5G2QQ31", "url": "https://omabrowser.org/oma/group/A0A5G2QQ31/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ31-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 75, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ31-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ31" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJC1-1", "uniprot_ac": "A0A5G2QJC1", "uniprot_id": "A0A5G2QJC1_PIG", "mass": { "chemical_mass": 142516.0, "monoisotopic_mass": 142516.0 }, "refseq": {}, "gene_names": [ { "name": "MYBPC2", "type": "recommended", "evidence": [ { "id": "A0A5G2QJC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ] } ], "protein_names": [ { "name": "Myosin-binding protein C, fast-type", "type": "recommended", "evidence": [ { "id": "A0A5G2QJC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1/entry#names_and_taxonomy" } ] }, { "name": "C-protein, skeletal muscle fast isoform", "type": "synonym", "evidence": [ { "id": "A0A5G2QJC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.", "evidence": [ { "database": "UniProtKB", "id": "F1RH19", "url": "https://www.uniprot.org/uniprotkb/F1RH19#function" }, { "database": "UniProtKB", "id": "ARBA00053486", "url": "https://www.uniprot.org/uniprotkb/ARBA00053486#function" }, { "database": "UniProtKB", "id": "F1RH20", "url": "https://www.uniprot.org/uniprotkb/F1RH20#function" }, { "database": "UniProtKB", "id": "A0A5G2QB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB13#function" }, { "database": "UniProtKB", "id": "A0A5G2QEJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ9#function" }, { "database": "UniProtKB", "id": "A0A5G2QGP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP4#function" }, { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYBPC2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1", "locus": { "chromosome": "6", "start_pos": 55310295, "end_pos": 55281803, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003218", "url": "https://www.ensembl.org/id/ENSSSCG00000003218" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003218", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003218", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05748", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05748", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05894", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05894", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YEHSRHT", "url": "https://omabrowser.org/oma/group/YEHSRHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18362", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18362", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-390522", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390522", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH19", "url": "https://www.uniprot.org/uniprotkb/F1RH19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH19-1", "url": "https://www.uniprot.org/uniprotkb/F1RH19-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH20", "url": "https://www.uniprot.org/uniprotkb/F1RH20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH20-1", "url": "https://www.uniprot.org/uniprotkb/F1RH20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPESLQATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVRNLWGGREGTQARAGGCAGLLGRGRAARRGKCVGWGRGPMCDQRALVVTDKSPQGSRSSGAWEESAGLSCGDSCGEGGSGGSGVALESGHTHPDRCPGPQVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEGAVRTSVGFLPPLNGHRGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQVVWTKGGAPIDTSRVHVRTSNFDTVFFVRQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSEVRTPHSPPAAPLSRAETCDQSAPHPLGAGWEANPDPSRDAAGGHAGAGAGGD", "length": 1290, "header": "tr|A0A5G2QJC1-1|A0A5G2QJC1_PIG Isoform 1 of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=2 CANONICAL=A0A5G2QJC1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB13/entry", "sequence": { "sequence": "MPEAKPATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEAPRQDSAGQSLESFKRSGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVGEPPRQSSVLIRASPDSLVATTLSVPLRRVPQPYAEPAPGIVSPEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQVVWTKGGAPIDTSRVHVRTSNFDTVFFVRQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSECRSEAPASTQGSWLLSPDPDLPEPLSLSRVITRFLSRTQ", "length": 1220, "header": "tr|A0A5G2QB13-1|A0A5G2QJC1_PIG Computationally mapped isoform of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=1 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55310184, "end_pos": 55282623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071750.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071750.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061227.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061227.1" } ] } }, { "isoform_ac": "A0A5G2QEJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ9/entry", "sequence": { "sequence": "MPEAKPATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVRNLWGGREGTQARAGGCAGLLGRGRAARRGKCVGWGRGPMCDQRALVVTDKSPQGSRSSGAWEESAGLSCGDSCGEGGSGGSGVALESGHTHPDRCPGPQVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEAPRQDSAGQSLESFKRSGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSEVRTPHSPPAAPLSRAETCDQSAPHPLGAGWEANPDPSRDAAGGHAGAGAGGD", "length": 1260, "header": "tr|A0A5G2QEJ9-1|A0A5G2QJC1_PIG Computationally mapped isoform of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=1 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55308909, "end_pos": 55282623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088015.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088015.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062108.1" } ] } }, { "isoform_ac": "A0A5G2QGP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGP4/entry", "sequence": { "sequence": "MPESLQATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVRNLWGGREGTQARAGGCAGLLGRGRAARRGKCVGWGRGPMCDQRALVVTDKSPQGSRSSGAWEESAGLSCGDSCGEGGSGGSGVALESGHTHPDRCPGPQVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEGAVRTSVGFLPPLNGHRGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSETCDHEAPASTQGSWLLSPDPDLPEPLSLSRVITRFLSRTQHTSVLLESVALLSSSWVGGGLVTWGRVTGAATVGPP", "length": 1278, "header": "tr|A0A5G2QGP4-1|A0A5G2QJC1_PIG Computationally mapped isoform of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=2 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55310292, "end_pos": 55282914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069121.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069121.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061171.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061171.2" } ] } }, { "isoform_ac": "A0A5G2QJC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1/entry", "sequence": { "sequence": "MPESLQATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVRNLWGGREGTQARAGGCAGLLGRGRAARRGKCVGWGRGPMCDQRALVVTDKSPQGSRSSGAWEESAGLSCGDSCGEGGSGGSGVALESGHTHPDRCPGPQVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEGAVRTSVGFLPPLNGHRGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQVVWTKGGAPIDTSRVHVRTSNFDTVFFVRQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSEVRTPHSPPAAPLSRAETCDQSAPHPLGAGWEANPDPSRDAAGGHAGAGAGGD", "length": 1290, "header": "tr|A0A5G2QJC1-1|A0A5G2QJC1_PIG Isoform 1 of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=2 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55308909, "end_pos": 55282914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087602.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087602.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064562.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064562.2" } ] } }, { "isoform_ac": "F1RH19-1", "url": "https://www.uniprot.org/uniprotkb/F1RH19/entry", "sequence": { "sequence": "MPEAKPATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVRNLWGGREGTQARAGGCAGLLGRGRAARRGKCVGWGRGPMCDQRALVVTDKSPQGSRSSGAWEESAGLSCGDSCGEGGSGGSGVALESGHTHPDRCPGPQVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEAPRQDSAGQSLESFKRSGEGKPEGAGELDFSGLLKKRQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQVVWTKGGAPIDTSRVHVRTSNFDTVFFVRQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSEVRTPHSPPAAPLSRAETCDQSAPHPLGAGWEANPDPSRDAAGGHAGAGAGGD", "length": 1290, "header": "tr|F1RH19-1|F1RH19_PIG Computationally mapped isoform of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=5 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55308909, "end_pos": 55282623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003575.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003575.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003492.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003492.5" } ] } }, { "isoform_ac": "F1RH20-1", "url": "https://www.uniprot.org/uniprotkb/F1RH20/entry", "sequence": { "sequence": "MPEAKPATKKAPAGKDAAKPAPKEAPPKGAPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVENGKDALIVAKVNGKELPGKPEIKWFKGKWLELGSKSGARFSFKESHDSASNVYTLELRIGKVVLGDRGDYRLEVKAKDFCDSCAFNIDVEAPRQDSAGQSLESFKRSQVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDQGNKIKLVVEISDPDLPLKWYKNGQEIKPSSKYVFENVGKKRILCINKCTLADDAAYEVAVKDEKCFTELFVREPPVLIVTPLEDQQVYVGDRVEMTVEVSEEGAQVMWLKDGVELTREDSFKSRYRFKKDGKRHILIYSDVSLEDRGRYQVMTNGGQCEAELSVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAVVVVAGNKLRLDVSITGEPPPVATWMKEDEVFSGTEGRVRLEQRADISSFVIESAERGDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTTVGEDWAILVWEPPKYDGGQPVTGYLLERKKKGSQRWMKLNFEVFTETTYESTNMIEGILYEMRVFAVNAIGVSQPSVNTKPFMPIAPTSEPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCVEGSDEWIPANTEPVERCGFTVKNLPTGARITFRVVGVNIAGRSQPATLAQPVTIREIVEQPKIRLPRHLRQTYIRKVGEHLNLVIPFQGKPRPQVVWTKGGAPIDTSRVHVRTSNFDTVFFVRQAARSDSGEYELSVQIENMKDTATVHIRVVEKAGPPQNVMVKEVWGTNALVEWQPPKDDGNTEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIMGNEYYFRVYSENICGLSDSPGVSKNTARILKTGITFKLPEFKEHDFRTPPKFLTPLPDRVVVAGYTAALNCAVRGHPKPKVVWMKNQMEIGEDPKFLMTNHQGVLTLNIRRPSPFDSGTYSCRASTSWGRPWPSASWKSECRSEAPASTQGSWLLSPDPDLPEPLSLSRVITRFLSRTQHTSVLLESVALLSSSWVGGGLVTWGRVTGAATVGPP", "length": 1192, "header": "tr|F1RH20-1|F1RH20_PIG Computationally mapped isoform of Myosin-binding protein C, fast-type OS=Sus scrofa OX=9823 GN=MYBPC2 PE=1 SV=5 CANONICAL=A0A5G2QJC1-1" }, "locus": { "chromosome": "6", "start_pos": 55310292, "end_pos": 55282623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003574.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003574.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003491.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003491.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 837, "start_aa": "Thr", "end_pos": 837, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr837", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-390522", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390522", "resource": "Reactome", "description": "Striated Muscle Contraction" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZA38-1", "protein_name": "Myosin-binding protein C, fast-type", "gene_name": "Mybpc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEAKPAAKKAPKGKDAPKEAPAAKQTPPAEPPKEAPPEDQSPTVEEPTGLFLKKPDSVSVETGKDTVILAKVNGKELPGKPSIKWFKGKWQELGSKSGARFTFKESHDSASNVYTVELHIGKVVLGDRGDYRLEVKAKDVCDSCPFNVDVEAPRQDSSGQSLESFKRSGDGKSEDAGELDFSGLLKKREVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDRGNKIKLVVEISDPDLPLKWFKNGQEIKPSSKYVFENVGKKRILTINKCTLADDAAYEVAVKDEKCFTELFVKEPPVLIVTPLEDQQVFVGDRVEMSVEVSEEGAQVMWMKDGVEMTREDSYKARYRFKKDGKRHILIYSDVAQEDGGRYQVITNGGQCEAELIVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSDNSIVVVAGNKLRLDVAITGEPPPTATWLKGDEVFTVSEGRTRIEQRPDCSSFVIESAERSDEGRYTIKVTNPAGEDVASIFLRVVDVPDPPEAVRVTSVGEDWAILVWEPPKYDGGQPVTGYLMERKKKGSHRWMKLNFEVFTDTTYESTKMIEGVLYEMRVFAVNAIGVSQPSMNTKPFMPIAPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVSANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIREIVEQPKIRLPRHLRQTYIRKVGEALNLVIPFQGKPRPQVVWTKGGAPLDTSRVNVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAGPAENVMVKEVWGTNALVEWQPPKDDGNSEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIVGNEYYFRVFSENICGLSDSPGVSKNTARILKTGITLKPMEYKEHDFRTAPKFLTPLMDRVVVAGYAAALNCAVRGHPKPKVVWMKNKMEIHEDPKFLITNYQGILTLNIRRPSPFDAGTYSCRAFNELGEALAECKLDVRGEEGMVPH", "length": 1143 }, "evidence": [ { "id": "A0A5G2QJC1", "url": "https://omabrowser.org/oma/group/A0A5G2QJC1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P16419-1", "protein_name": "Myosin-binding protein C, fast-type", "gene_name": "MYBPC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPEPSKAAPKKEAKKKEEKKEEKKEAPPPQEHKDEAPDDVHPPETPDPEGLFLSKPQNVMVESGRDVTVSARVAGAALPCAPAVKWFKGKWAELGDKSARCRLRHSVDDDKVHTFELTITKVAMGDRGDYRCEVTAKEQKDSCSFSIDVEAPRSSEGNVLQAFKRTGEGKDDTAGELDFSGLLKKREVQVEEKKKKKDEDDQFPPEIWELLKGVTKKSEYERIAFQYGITDLRGMLKRLKKVHVEPKKSEAFIRKLDPAYQVDKGNKIKLVVELSDPDLPLKWYKNGQLLKPSTKYVFENVGLKRILTIHKCSLADDAAYECRVNDEKCFTEVFVKEPPVTVVRGLEDQQVVVGDRVVLEAEVSEEGAQVMWLKDGVDVTRDDAFKYRFKKDGKKHFLIINEAELSDSAHYKIMTNGGESEAELSVEEKQLEVLQDMADLTVKASEQAVFKCEVSDEKVTGRWFRNGVEVKPSKRIHISHNGRFHKLVIDDVRPEDEGDYTFIPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKAAENTIVVVAGNKVRLDVPISGEPAPTVTWKRGDQLFTATEGRVHIDSQADLSSFVIESAERSDEGRYCITVTNPVGEDSATLHVRVVDVPDPPQSVRVTSVGEDWAVLSWEAPPFDGGMPITGYLMERKKKGSMRWMKLNFEVFPDTTYESTKMIEGVFYEMRVFAVNAIGVSQPSLNTQPFMPIAPTSEPTHVVLEDVTDTTATIKWRPPERIGAGGVDGYLVEWCREGSNEWVAANTELVERCGLTARGLPTGERLLFRVISVNMAGKSPPATMAQPVTIREIVERPKIRLPRHLRQTYIRRVGEQVNLVIPFQGKPRPQVTWSREGGALPAEVQTRTSDVDSVFFIRSAARPLSGNYEMRVRIDNMEDCATLRLRVVERPGPPQAVRVMEVWGSNALLQWEPPKDDGNAEISGYTVQKADTRTMEWFTVLEHSRPTRCTVSELVMGNEYRFRVYSENVCGTSQEPATSHNTARIAKEGLTLKMVPYKERDLRAAPQFLTPLVDRSVVAGYTVTLNCAVRGHPKPKVTWLKNSVEIGADPKFLSRHGLGVLSLLIRRPGPFDGGTYGCRAVNEMGEATTECRLDVRVPQ", "length": 1132 }, "evidence": [ { "id": "A0A5G2QJC1", "url": "https://omabrowser.org/oma/group/A0A5G2QJC1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q14324-1", "protein_name": "Myosin-binding protein C, fast-type", "gene_name": "MYBPC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPEAKPAAKKAPKGKDAPKGAPKEAPPKEAPAEAPKEAPPEDQSPTAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAPRQDASGQSLESFKRTSEKKSDTAGELDFSGLLKKREVVEEEKKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDRGNKIKLMVEISDPDLTLKWFKNGQEIKPSSKYVFENVGKKRILTINKCTLADDAAYEVAVKDEKCFTELFVKEPPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKDGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIVEEKQLEVLQDIADLTVKASEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSENAIVVVAGNKLRLDVSITGEPPPVATWLKGDEVFTTTEGRTRIEKRVDCSSFVIESAQREDEGRYTIKVTNPVGEDVASIFLQVVDVPDPPEAVRITSVGEDWAILVWEPPMYDGGKPVTGYLVERKKKGSQRWMKLNFEVFTETTYESTKMIEGILYEMRVFAVNAIGVSQPSMNTKPFMPIAPTSEPLHLIVEDVTDTTTTLKWRPPNRIGAGGIDGYLVEYCLEGSEEWVPANTEPVERCGFTVKNLPTGARILFRVVGVNIAGRSEPATLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAGPPINVMVKEVWGTNALVEWQAPKDDGNSEIMGYFVQKADKKTMEWFNVYERNRHTSCTVSDLIVGNEYYFRVYTENICGLSDSPGVSKNTARILKTGITFKPFEYKEHDFRMAPKFLTPLIDRVVVAGYSAALNCAVRGHPKPKVVWMKNKMEIREDPKFLITNYQGVLTLNIRRPSPFDAGTYTCRAVNELGEALAECKLEVRVPQ", "length": 1141 }, "evidence": [ { "id": "A0A5G2QJC1", "url": "https://omabrowser.org/oma/group/A0A5G2QJC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5XKE0-1", "protein_name": "Myosin-binding protein C, fast-type", "gene_name": "Mybpc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEAKPAAKKASKGKDAPKEAPAKQTPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVETGKDAVILAKVNGKELPGKPTIKWFKGKWQELGSKSGARFIFKESHDSTSNVYTVELHIGKVVLGDRGDYRLEIKAKDVCDSCSFNVDVEAPRQDSSGQSLESFKRSGDGKSEDAGELDFSGLLKKREVVEEEKKKKKDDDDLGIPPEIWELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDRGNKIKLVVEISDPDLPLKWFKNGQEIKPSSKYVFENVGKKRILTINKCTLADDAAYEVAVQDEKCFTELFVKEPPVLIVTPLEDQQVFVGDRVEMSVEVSEEGAQVMWMKDGVEMTREDSYKARYRFKKDGKRHILIYSDVAQEDGGRYQVITNGGQCEAELIVEEKQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSDNSIVVVAGNKLRLDVAITGEPPPTATWLRGDEVFTATEGRTHIEQRPDCSSFVIESAERSDEGRYTIKVTNPVGEDVASIFLRVVDVPDPPEAVRVTSVGEDWAILVWEPPKYDGGQPVTGYLMERKKKGSQRWMKINFEVFTDTTYESTKMIEGVLYEMRVFAVNAIGVSQPSMNTKPFMPIAPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIREIVEQPKIRLPRHLRQTYIRKVGEALNLVIPFQGKPRPQVVWTKGGAPLDTSRVNVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAGPAENVMVKEVWGTNALVEWQPPKDDGNSEITGYFVQKADKKTMEWFNVYEHNRHTSCTVSDLIVGNEYYFRIFSENICGLSDSPGVSKNTARILKTGITLKPLEYKEHDFRTAPKFLTPLMDRVVVAGYTAALNCAVRGHPKPKVVWMKNKMEIHEDPKFLITNYQGILTLNIRRPSPFDAGTYSCRAFNELGEALAECKLDVRVPQ", "length": 1136 }, "evidence": [ { "id": "A0A5G2QJC1", "url": "https://omabrowser.org/oma/group/A0A5G2QJC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" }, { "name": "structural constituent of muscle", "id": "GO:0008307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008307", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" }, { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "myosin filament", "id": "GO:0032982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032982", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" }, { "name": "M band", "id": "GO:0031430", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031430", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 741, "end_pos": 837, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QJC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC1" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 445, "end_pos": 533, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 837 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNU9-1", "uniprot_ac": "A0A5G2QNU9", "uniprot_id": "A0A5G2QNU9_PIG", "mass": { "chemical_mass": 134544.0, "monoisotopic_mass": 134544.0 }, "refseq": {}, "gene_names": [ { "name": "IGSF3", "type": "recommended", "evidence": [ { "id": "A0A5G2QNU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9" } ] } ], "protein_names": [ { "name": "Immunoglobulin superfamily member 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QNU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IGSF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9", "locus": { "chromosome": "4", "start_pos": 104166988, "end_pos": 103994390, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006737", "url": "https://www.ensembl.org/id/ENSSSCG00000006737" } ] } } ], "crossref": [ { "id": "A0A5G2QNU9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNU9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006737", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006737", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00099", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00099", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCE7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAX8", "url": "https://www.uniprot.org/uniprotkb/F1SAX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCFFSVLSCLAVLGAVAAQRQVAVQEGPLYRTEGSHITIWCNVSGYQEPLEQNFQWSIYLPSAPEREVQIVSTRDSSFPYAIYTQRVRSGKIYVERVQGNLALLHITDLQARDAGEYECHTPNTEDQYFGSYSAKMNLVVIPDSLQTTAVPQTLHKVEQDPLELTCEVATETLQHSHLSVAWLRQRGSEKPVEVISLSRDFVLQSSSDYAQRQSLGEVRLDKLGSSTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYPMTRKRSEGTLVNVQPTDKEFTVRLETDKRLYTVGEPVEFRCILEAQNIPDRYFAVSWAFNSSLIASMGPNAVPILNSEFNHREARGQLKVAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPIKSSISVEVASNASIVLEGENLHLSCSIRTAGRPLGRFSVMWQLVDRQNRRSNIMWLDRDGTLQHGASYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQVVGERRASTLISITALETGFAVTAISRTPGVTYSDSFDLQCIIKPHYPSRVPVAVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRRNYNNSWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENRPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHSSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLKLSQAQGNLSVLETRQVQLECVVLNRTSAASQLLVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCRVEEWLPPGGAWYKRAEDTAGQTAVRVTRPDAALQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGRRSSLALEDGEEEEEEEEGEEEEDPTERTALLSVGPDAIFGPEGSPWEGRLRFQRLSPLLYRLTVLQASPQDTGNYSCRVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSSTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSEGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID", "length": 1190, "header": "tr|A0A5G2QNU9-1|A0A5G2QNU9_PIG Isoform 1 of Immunoglobulin superfamily member 3 OS=Sus scrofa OX=9823 GN=IGSF3 PE=1 SV=1 CANONICAL=A0A5G2QNU9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE7/entry", "sequence": { "sequence": "AELSLLCVSLPPGAVAAQRQVAVQEGPLYRTEGSHITIWCNVSGYQEPLEQNFQWSIYLPSAPEREVQIVSTRDSSFPYAIYTQRVRSGKIYVERVQGNLALLHITDLQARDAGEYECHTPNTEDQYFGSYSAKMNLPSVLPEVIPDSLQTTAVPQTLHKVEQDPLELTCEVATETLQHSHLSVAWLRQRGSEKPVEVISLSRDFVLQSSSDYAQRQSLGEVRLDKLGSSTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYPMTRKRSEGTLVNVQPTDKEFTVRLETDKRLYTVGEPVEFRCILEAQNIPDRYFAVSWAFNSSLIASMGPNAVPILNSEFNHREARGQLKVAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPIKSSISVEVASNASIVLEGENLHLSCSIRTAGRPLGRFSVMWQLVDRQNRRSNIMWLDRDGTLQHGASYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQVVGERRASTLISITALETGFAVTAISRTPGVTYSDSFDLQCIIKPHYPSRVPVAVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRRNYNNSWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENRPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHSSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLKLSQAQGNLSVLETRQVQLECVVLNRTSAASQLLVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAPGGAWYKRAEDTAGQTAVRVTRPDAALQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGRRSSLALEDGEEEEEEEEGEEEEDPTERTALLSVGPDAIFGPEGSPWEGRLRFQRLSPLLYRLTVLQASPQDTGNYSCRVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSSTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSEGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID", "length": 1177, "header": "tr|A0A5G2QCE7-1|A0A5G2QNU9_PIG Computationally mapped isoform of Immunoglobulin superfamily member 3 OS=Sus scrofa OX=9823 GN=IGSF3 PE=1 SV=2 CANONICAL=A0A5G2QNU9-1" }, "locus": { "chromosome": "4", "start_pos": 104164241, "end_pos": 104120831, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088892.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088892.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061774.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061774.2" } ] } }, { "isoform_ac": "A0A5G2QNU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9/entry", "sequence": { "sequence": "MKCFFSVLSCLAVLGAVAAQRQVAVQEGPLYRTEGSHITIWCNVSGYQEPLEQNFQWSIYLPSAPEREVQIVSTRDSSFPYAIYTQRVRSGKIYVERVQGNLALLHITDLQARDAGEYECHTPNTEDQYFGSYSAKMNLVVIPDSLQTTAVPQTLHKVEQDPLELTCEVATETLQHSHLSVAWLRQRGSEKPVEVISLSRDFVLQSSSDYAQRQSLGEVRLDKLGSSTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYPMTRKRSEGTLVNVQPTDKEFTVRLETDKRLYTVGEPVEFRCILEAQNIPDRYFAVSWAFNSSLIASMGPNAVPILNSEFNHREARGQLKVAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPIKSSISVEVASNASIVLEGENLHLSCSIRTAGRPLGRFSVMWQLVDRQNRRSNIMWLDRDGTLQHGASYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQVVGERRASTLISITALETGFAVTAISRTPGVTYSDSFDLQCIIKPHYPSRVPVAVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRRNYNNSWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENRPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHSSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLKLSQAQGNLSVLETRQVQLECVVLNRTSAASQLLVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCRVEEWLPPGGAWYKRAEDTAGQTAVRVTRPDAALQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGRRSSLALEDGEEEEEEEEGEEEEDPTERTALLSVGPDAIFGPEGSPWEGRLRFQRLSPLLYRLTVLQASPQDTGNYSCRVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSSTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSEGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID", "length": 1190, "header": "tr|A0A5G2QNU9-1|A0A5G2QNU9_PIG Isoform 1 of Immunoglobulin superfamily member 3 OS=Sus scrofa OX=9823 GN=IGSF3 PE=1 SV=1 CANONICAL=A0A5G2QNU9-1" }, "locus": { "chromosome": "4", "start_pos": 104164241, "end_pos": 104059010, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089796.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089796.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059972.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059972.1" } ] } }, { "isoform_ac": "A0A5G2R0X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X1/entry", "sequence": { "sequence": "MKCFFSVLSCLAVLGAVAAQRQVAVQEGPLYRTEGSHITIWCNVSGYQEPLEQNFQWSIYLPSAPEREVQIVSTRDSSFPYAIYTQRVRSGKIYVERVQGNLALLHITDLQARDAGEYECHTPNTEDQYFGSYSAKMNLVVIPDSLQTTAVPQTLHKVEQDPLELTCEVATETLQHSHLSVAWLRQRGSEKPVEVISLSRDFVLQSSSDYAQRQSLGEVRLDKLGSSTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYPMTRKRSEGTLVNVQPTDKEFTVRLETDKRLYTVGEPVEFRCILEAQNIPDRYFAVSWAFNSSLIASMGPNAVPILNSEFNHREARGQLKVAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPITDNWVVKVPQHHQILPQGHLESSISVEVASNASIVLEGENLHLSCSIRTAGRPLGRFSVMWQLVDRQNRRSNIMWLDRDGTLQHGASYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQVVGERRASTLISITALETGFAVTAISRTPGVTYSDSFDLQCIIKPHYPSRVPVAVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRRNYNNSWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENRPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHSSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLKLSQAQGNLSVLETRQVQLECVVLNRTSAASQLLVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCRVEEWLPPGGAWYKRAEDTAGQTAVRVTRPDAALQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGRRSSLALEDGEEEEEEEEGEEEEDPTERTALLSVGPDAIFGPEGSPWEGRLRFQRLSPLLYRLTVLQASPQDTGNYSCRVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSSTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSEGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID", "length": 1210, "header": "tr|A0A5G2R0X1-1|A0A5G2R0X1_PIG Computationally mapped isoform of Immunoglobulin superfamily member 3 OS=Sus scrofa OX=9823 GN=IGSF3 PE=1 SV=1 CANONICAL=A0A5G2QNU9-1" }, "locus": { "chromosome": "4", "start_pos": 104164241, "end_pos": 104059010, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081309.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081309.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070758.1" } ] } }, { "isoform_ac": "F1SAX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAX8/entry", "sequence": { "sequence": "VSLLCVSLPPGAVAAQRQVAVQEGPLYRTEGSHITIWCNVSGYQEPLEQNFQWSIYLPSAPEREVQIVSTRDSSFPYAIYTQRVRSGKIYVERVQGNLALLHITDLQARDAGEYECHTPNTEDQYFGSYSAKMNLVVIPDSLQTTAVPQTLHKVEQDPLELTCEVATETLQHSHLSVAWLRQRGSEKPVEVISLSRDFVLQSSSDYAQRQSLGEVRLDKLGSSTFRLTIFHLQPSDQGEFYCEAAEWIQDPDGSWYPMTRKRSEGTLVNVQPTDKEFTVRLETDKRLYTVGEPVEFRCILEAQNIPDRYFAVSWAFNSSLIASMGPNAVPILNSEFNHREARGQLKVAKESDSVFVLKIYHLRQEDSGKYNCRVTEREKTVTGEFIDKESKRPKNIPIIVLPIKSSISVEVASNASIVLEGENLHLSCSIRTAGRPLGRFSVMWQLVDRQNRRSNIMWLDRDGTLQHGASYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECHVTEWVRAVDGEWQVVGERRASTLISITALETGFAVTAISRTPGVTYSDSFDLQCIIKPHYPSRVPVAVTWRFQPVGTVEFHDLVTFTRDGGVQWGDRSSSFRTRTAIEKAESSNNVRLSISRASDTEAGKYQCVAELWRRNYNNSWTRLAERTSNLLEIRVLQPVTKLQVSKSKRTLTLVENRPIQLNCSVKSQTSQNSHFAVLWYVHKPSDADGKLILKTTHSSAFEYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCHVEEWLLSPNYAWYKLAEEVSGRTEVTVKQPDSRLKLSQAQGNLSVLETRQVQLECVVLNRTSAASQLLVEWFVWKPNHPERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCRPGGAWYKRAEDTAGQTAVRVTRPDAALQVDTVVPNATVSEKAAFQLDCSIVSRSSQDSRFAVAWYSLRTKAGGRRSSLALEDGEEEEEEEEGEEEEDPTERTALLSVGPDAIFGPEGSPWEGRLRFQRLSPLLYRLTVLQASPQDTGNYSCRVEEWLPSPQKEWYRLTEEESAPIGIRVLDTSSTLQSIICSNDALFYFVFFYPFPIFGILIITILLVRFKSRNSSKNSEGKNGVPLLWIKEPHLNYSPTCLEPPVLSIHPGAID", "length": 1180, "header": "tr|F1SAX8-1|F1SAX8_PIG Computationally mapped isoform of Immunoglobulin superfamily member 3 OS=Sus scrofa OX=9823 GN=IGSF3 PE=1 SV=4 CANONICAL=A0A5G2QNU9-1" }, "locus": { "chromosome": "4", "start_pos": 104164241, "end_pos": 104120971, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007380.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007380.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007185.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007185.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lacrimal gland development", "id": "GO:0032808", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032808", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1073, "end_pos": 1075, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1149, "end_pos": 1151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1171, "end_pos": 1173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" }, { "start_pos": 700, "end_pos": 702, "annotation": "n_glycosylation_sequon" }, { "start_pos": 825, "end_pos": 827, "annotation": "n_glycosylation_sequon" }, { "start_pos": 842, "end_pos": 844, "annotation": "n_glycosylation_sequon" }, { "start_pos": 960, "end_pos": 962, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNU9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1190, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNU9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNU9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU9" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 138, "start_aa": "Glu", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1073, "end_pos": 1075 }, { "start_pos": 1149, "end_pos": 1151 }, { "start_pos": 1171, "end_pos": 1173 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 418, "end_pos": 420 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 655, "end_pos": 657 }, { "start_pos": 700, "end_pos": 702 }, { "start_pos": 825, "end_pos": 827 }, { "start_pos": 842, "end_pos": 844 }, { "start_pos": 960, "end_pos": 962 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM19-1", "uniprot_ac": "A0A5G2QM19", "uniprot_id": "A0A5G2QM19_PIG", "mass": { "chemical_mass": 59759.0, "monoisotopic_mass": 59759.0 }, "refseq": {}, "gene_names": [ { "name": "PEPD", "type": "recommended", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ] } ], "protein_names": [ { "name": "Xaa-Pro dipeptidase", "type": "recommended", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry#names_and_taxonomy" } ] }, { "name": "3.4.13.9", "type": "synonym", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry#names_and_taxonomy" } ] }, { "name": "Imidodipeptidase", "type": "synonym", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry#names_and_taxonomy" } ] }, { "name": "Peptidase D", "type": "synonym", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry#names_and_taxonomy" } ] }, { "name": "Proline dipeptidase", "type": "synonym", "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Dipeptidase that catalyzes the hydrolysis of dipeptides with a prolyl (Xaa-Pro) or hydroxyprolyl residue in the C-terminal position. The preferred dipeptide substrate is Gly-Pro, but other Xaa-Pro dipeptides, such as Ala-Pro, Met-Pro, Phe-Pro, Val-Pro and Leu-Pro, can be cleaved. Plays an important role in collagen metabolism because the high level of iminoacids in collagen.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19#function" }, { "database": "UniProtKB", "id": "ARBA00056110", "url": "https://www.uniprot.org/uniprotkb/ARBA00056110#function" }, { "database": "UniProtKB", "id": "A0A5G2QMV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEPD", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19", "locus": { "chromosome": "6", "start_pos": 43177062, "end_pos": 43290369, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002868", "url": "https://www.ensembl.org/id/ENSSSCG00000002868" } ] } } ], "crossref": [ { "id": "A0A5G2QM19", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM19", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002868", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002868", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01087", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01087", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48480", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48480", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48480:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48480:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "76407", "url": "https://www.rhea-db.org/rhea/76407", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QCI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM19-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW46-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LR43", "url": "https://www.uniprot.org/uniprotkb/I3LR43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LR43-1", "url": "https://www.uniprot.org/uniprotkb/I3LR43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RAATPGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMERPCLCSLPGAYPTLFCLPAGLPLKSIFQARTQRLLLSPPCIHPSLSLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 538, "header": "tr|A0A5G2QM19-1|A0A5G2QM19_PIG Isoform 1 of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=2 CANONICAL=A0A5G2QM19-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCI8/entry", "sequence": { "sequence": "MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 429, "header": "tr|A0A5G2QCI8-1|A0A5G2QM19_PIG Computationally mapped isoform of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=1 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43290291, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067726.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067726.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061820.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061820.1" } ] } }, { "isoform_ac": "A0A5G2QM19-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19/entry", "sequence": { "sequence": "RAATPGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMERPCLCSLPGAYPTLFCLPAGLPLKSIFQARTQRLLLSPPCIHPSLSLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 538, "header": "tr|A0A5G2QM19-1|A0A5G2QM19_PIG Isoform 1 of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=2 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43281914, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083242.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083242.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063141.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063141.2" } ] } }, { "isoform_ac": "A0A5G2QMV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV2/entry", "sequence": { "sequence": "MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 452, "header": "tr|A0A5G2QMV2-1|A0A5G2QMV2_PIG Computationally mapped isoform of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=1 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43290291, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072167.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072167.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066212.1" } ] } }, { "isoform_ac": "A0A5G2QQV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV1/entry", "sequence": { "sequence": "MPMSLDLAGAPDVSSVTSSDSDSSADLEAGGWGCRPVCSQDQEPCGRKAKATQPPLAWVFVFSRADFSGTMSKLECSSSLIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQDGDMCLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 463, "header": "tr|A0A5G2QQV1-1|A0A5G2QQV1_PIG Computationally mapped isoform of Peptidase D OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=1 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43271473, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074412.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074412.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066427.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066427.1" } ] } }, { "isoform_ac": "A0A5G2QW46-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW46/entry", "sequence": { "sequence": "RAATPGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLVSGWGPRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 414, "header": "tr|A0A5G2QW46-1|A0A5G2QW46_PIG Computationally mapped isoform of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=2 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43281914, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083138.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083138.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062409.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062409.2" } ] } }, { "isoform_ac": "A0A5G2RE96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE96/entry", "sequence": { "sequence": "RAATPGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVFLGPGNCLLLSSTSSRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 433, "header": "tr|A0A5G2RE96-1|A0A5G2RE96_PIG Computationally mapped isoform of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=1 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43281914, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067969.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067969.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072921.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072921.1" } ] } }, { "isoform_ac": "I3LR43-1", "url": "https://www.uniprot.org/uniprotkb/I3LR43/entry", "sequence": { "sequence": "MAAATGPSFWLGNETLKVPLALFVLNRRRLCERLRKNPAVQAGSVVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDIDSGTSTLFVPRLPPSHATWMGKIHSKEHFKEKYAVDDVHYADEIASVLTSRSPSVLLTLRGVNTDSGSVCREASFEGISKFNVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEMESLFDMGGEYYCFASDITCSFPANGKFTEDQKAIYEAVLRSCRAVMNSMKPGVWWPDMHRLADRVHLEELTRIGILTGSVDAMVQVHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQAGMVLTVEPGIYFIDHLLDEALADPARACFFNCEVLQRFRGFGGVRIEEDVVVTNSGMELLTCVPRTVEEIEACMAGRDKAFVPFSGPK", "length": 444, "header": "tr|I3LR43-1|I3LR43_PIG Computationally mapped isoform of Xaa-Pro dipeptidase OS=Sus scrofa OX=9823 GN=PEPD PE=1 SV=2 CANONICAL=A0A5G2QM19-1" }, "locus": { "chromosome": "6", "start_pos": 43290291, "end_pos": 43177323, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028877.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028877.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026575.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026575.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 4, "start_aa": "Thr", "end_pos": 4, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr4", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "negative regulation of programmed cell death", "id": "GO:0043069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043069", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "collagen catabolic process", "id": "GO:0030574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030574", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "metallopeptidase activity", "id": "GO:0008237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008237", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "manganese ion binding", "id": "GO:0030145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030145", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "metalloaminopeptidase activity", "id": "GO:0070006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070006", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" }, { "name": "proline dipeptidase activity", "id": "GO:0102009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102009", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "76407", "name": "", "equation": "Xaa-L-Pro dipeptide + H2O = an L-alpha-amino acid + L-proline", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "76407", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/76407" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM19-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 538, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM19-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM19" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM19" }, { "id": "SM01011", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminopeptidase P N-terminal", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 155, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 4 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNC0-1", "uniprot_ac": "A0A5G2QNC0", "uniprot_id": "A0A5G2QNC0_PIG", "mass": { "chemical_mass": 38926.0, "monoisotopic_mass": 38926.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100512544", "type": "recommended", "evidence": [ { "id": "A0A5G2QNC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ] } ], "protein_names": [ { "name": "B30.2/SPRY domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QNC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100512544", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNC0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033716", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033716", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000041674", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041674", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15819", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15819", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512544", "url": "https://www.ncbi.nlm.nih.gov/gene/100512544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512544", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RBQ4", "url": "https://www.orthodb.org/?gene=A0A5G2RBQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A755", "url": "https://www.uniprot.org/uniprotkb/A0A287A755", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A755-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A755-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC69", "url": "https://www.uniprot.org/uniprotkb/A0A287BC69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN14-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RER6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RER6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RER6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RER6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSVFLQRNQLITLWGFPCRSVRLQRSVSLLTVLGELRDENDNLRKINGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 342, "header": "tr|A0A5G2QNC0-1|A0A5G2QNC0_PIG Isoform 1 of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "isoforms": [ { "isoform_ac": "A0A287A755-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A755/entry", "sequence": { "sequence": "QKYNNNSAWNHCCNNDTFISRFLQTLFQNKRFSPWTFRQSSENKWSVRLQRSVSLLTVLGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 283, "header": "tr|A0A287A755-1|A0A287A755_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=2 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 64670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051917.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051917.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039775.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039775.2" } ] } }, { "isoform_ac": "A0A287BC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC69/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGELRDENDNLRKINGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 304, "header": "tr|A0A287BC69-1|A0A287BC69_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=2 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060090.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060090.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053678.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053678.2" } ] } }, { "isoform_ac": "A0A5G2QEY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY5/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSVFLQRNQLITLWGFPCRSVRLQRSVSLLTVLGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 328, "header": "tr|A0A5G2QEY5-1|A0A5G2QNC0_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078483.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078483.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063271.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063271.1" } ] } }, { "isoform_ac": "A0A5G2QGN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGN7/entry", "sequence": { "sequence": "MLPALCSTSVPPTFCCFCISTYVLNLTILTYYLYLKPDRFYLSCFLKCNTEVIQDRKRKYEGFKRGKGIMTGSNGKDNRSKWRRKKAKGFPTFSFAAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 304, "header": "tr|A0A5G2QGN7-1|A0A5G2QNC0_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 120015, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079945.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079945.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062973.1" } ] } }, { "isoform_ac": "A0A5G2QGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGV1/entry", "sequence": { "sequence": "MYGFNCIFLMKSRNPLISMGVLCFLSARRKAQFKKAWRDAPLYPGDPLVFAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 241, "header": "tr|A0A5G2QGV1-1|A0A5G2QNC0_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 137792, "end_pos": 135793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076108.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076108.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063038.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063038.1" } ] } }, { "isoform_ac": "A0A5G2QN14-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN14/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 297, "header": "tr|A0A5G2QN14-1|A0A5G2QN14_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079520.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079520.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065438.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065438.1" } ] } }, { "isoform_ac": "A0A5G2QNC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSVFLQRNQLITLWGFPCRSVRLQRSVSLLTVLGELRDENDNLRKINGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 342, "header": "tr|A0A5G2QNC0-1|A0A5G2QNC0_PIG Isoform 1 of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087902.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087902.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065544.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065544.1" } ] } }, { "isoform_ac": "A0A5G2RBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBQ4/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSGELRDENDNLRKINGALQDEIARRKAQFKKAWRDAPLYPDWRKEEFKAANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 311, "header": "tr|A0A5G2RBQ4-1|A0A5G2RBQ4_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078719.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078719.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071607.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071607.1" } ] } }, { "isoform_ac": "A0A5G2RER6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RER6/entry", "sequence": { "sequence": "MNKLSKIMSAALLITILNLFYQVASEKPGENENCSDKNIIIIVLGIIAAIMTLLFLVFCKLYFKTRGSLHGHSGELRDENDNLRKINGALQDEIARRKAQFKKAWRDAPLYPANVTLDEATAHPALLVSERGRRVTWQETCQDLPRSTQRFNSIPCVLGQLRINSGRACWEVEVGDMQSWDLGICRDNVTREGVFTMSPQNGFWAIRLYDGDYWALTSPETSLPLRERPLKVGIFLDYEAGDVSFYNMTDGSHIFTFPQSTFYGVLRPLFRLWSSDSGSLTICSAEGECTDVVIHMPTLQVK", "length": 302, "header": "tr|A0A5G2RER6-1|A0A5G2RER6_PIG Computationally mapped isoform of B30.2/SPRY domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100512544 PE=1 SV=1 CANONICAL=A0A5G2QNC0-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 121670, "end_pos": 43720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067384.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067384.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069402.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069402.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512544", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512544", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 342, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC0" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 329, "start_aa": "Ala", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKP6-1", "uniprot_ac": "A0A5G2QKP6", "uniprot_id": "A0A5G2QKP6_PIG", "mass": { "chemical_mass": 27434.0, "monoisotopic_mass": 27434.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QKP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007001", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007001", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000044384", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044384", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QGG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLFGFGSKTTVLSAGSSGEGSSGVNQLPGYHVRDKDLGKIHRAACEGDVARVQQILLLRRNGPNDKDKRNRTALHLACAGGRPAVVTLLAKWKCQLNICDSENRTALIKAVQCQQEECTSILLEHGADPNLVDVKGYTALHYAAFGPNISIAAKLLSYNANIEARDKDDLTPLLLAVSENQQQMVEFLLQKEANIHAVDKMKRTALILAVNFASSSVVRLLLEQGVDISPQDRYGRNAEDYAVIKGHQM", "length": 251, "header": "tr|A0A5G2QKP6-1|A0A5G2QKP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QKP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG8/entry", "sequence": { "sequence": "MKKLFGFGSKTTVLSAGSSGEGSSGVNQLPGYHVRDKDLGKIHRAACEGDVARVQQILLLRRNGPNDKDKRNRLSNVSKKNVPVFCWNMVPTQILWMSRATRPSTMLPLVRISPSQQKTRYGSTNFLFKYKRLWLTVPLGQFLLTEI", "length": 147, "header": "tr|A0A5G2QGG8-1|A0A5G2QKP6_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKP6-1" }, "locus": { "chromosome": "17", "start_pos": 13603525, "end_pos": 13597678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073741.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073741.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063862.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063862.1" } ] } }, { "isoform_ac": "A0A5G2QKP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP6/entry", "sequence": { "sequence": "MKKLFGFGSKTTVLSAGSSGEGSSGVNQLPGYHVRDKDLGKIHRAACEGDVARVQQILLLRRNGPNDKDKRNRTALHLACAGGRPAVVTLLAKWKCQLNICDSENRTALIKAVQCQQEECTSILLEHGADPNLVDVKGYTALHYAAFGPNISIAAKLLSYNANIEARDKDDLTPLLLAVSENQQQMVEFLLQKEANIHAVDKMKRTALILAVNFASSSVVRLLLEQGVDISPQDRYGRNAEDYAVIKGHQM", "length": 251, "header": "tr|A0A5G2QKP6-1|A0A5G2QKP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QKP6-1" }, "locus": { "chromosome": "17", "start_pos": 13603525, "end_pos": 13594844, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081420.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081420.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062637.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062637.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 251, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKP6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH65-1", "uniprot_ac": "A0A5G2QH65", "uniprot_id": "A0A5G2QH65_PIG", "mass": { "chemical_mass": 12754.0, "monoisotopic_mass": 12754.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element dsRBD-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QH65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH65", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH65", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSADFSAETLQARREWHDILNVMKGNNLQPRLLYPTRLLFRFEGQIKTFTDKQKLREFSNTKPGLSLVFKTYTKGTSIGRKEQEKERKKSSNSKSKAINKMAIKHTYQ", "length": 109, "header": "tr|A0A5G2QH65-1|A0A5G2QH65_PIG Isoform 1 of L1 transposable element dsRBD-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH65-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65/entry", "sequence": { "sequence": "MLSADFSAETLQARREWHDILNVMKGNNLQPRLLYPTRLLFRFEGQIKTFTDKQKLREFSNTKPGLSLVFKTYTKGTSIGRKEQEKERKKSSNSKSKAINKMAIKHTYQ", "length": 109, "header": "tr|A0A5G2QH65-1|A0A5G2QH65_PIG Isoform 1 of L1 transposable element dsRBD-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QH65-1" }, "locus": { "chromosome": "5", "start_pos": 95474270, "end_pos": 95473944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082078.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082078.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063674.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063674.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH65-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 109, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH65-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH65" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH65" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 70, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH90-1", "uniprot_ac": "A0A5G2QH90", "uniprot_id": "A0A5G2QH90_PIG", "mass": { "chemical_mass": 14158.0, "monoisotopic_mass": 14158.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH90", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH90", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044175", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044175", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QH90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRNLHTVFHSGCTNLQSPQQCTRVPFSPHPIQDLLFVDFLKMTILAGVRWYLRVVLISISLIMSDAEHLFMCFSVICMSSLEKCQFRSSAHFLMGLSVFSIWSCRRCL", "length": 125, "header": "tr|A0A5G2QH90-1|A0A5G2QH90_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QH90-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90/entry", "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRNLHTVFHSGCTNLQSPQQCTRVPFSPHPIQDLLFVDFLKMTILAGVRWYLRVVLISISLIMSDAEHLFMCFSVICMSSLEKCQFRSSAHFLMGLSVFSIWSCRRCL", "length": 125, "header": "tr|A0A5G2QH90-1|A0A5G2QH90_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QH90-1" }, "locus": { "chromosome": "2", "start_pos": 115315594, "end_pos": 115315097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080890.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080890.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064153.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064153.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH90-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 125, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH90-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH90" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QH93-1", "uniprot_ac": "A0A5G2QH93", "uniprot_id": "A0A5G2QH93_PIG", "mass": { "chemical_mass": 61853.0, "monoisotopic_mass": 61853.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110261321", "type": "recommended", "evidence": [ { "id": "A0A5G2QH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110261321", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93", "locus": {} } ], "crossref": [ { "id": "A0A5G2QH93", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032196", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032196", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF304", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF304", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGPLSPQLTAVPSFPPCSPPLPAPLFPRPVAEAAPMNPAQGRVVFEDVAIHFSQDEWCLLDEAQRLLYWRVMLQNIALLSSVGCWHRAQAEEAEQGDSVRVSQVKTPKMHSPLLKDILRLAEHDGTQPEHEVYVCAASLSPQRTVMGREGGQDLPASPGLLQHSAPHNGGTLPSQWRETFENGHNDYRCSQCGKTFSHKYVLVEHQKHHTGEKRYHPSESGELFISRFRLVQHQEIHTEVKLLEHVGCGRFFTRTSGLIEHRRVRTRPVPYKCHQCGKCVKDSATLLVHQRVHTGEKPYKCSECGKFFRYSFTLKRHQRVHAGERPYECSVCGKFFVDSSTLLIHQRVHTRGRRFECNKCGQFFRYSFTLERHQKAHTGERPYECRECGKLFRHNSNHIRHRRNHTGERPYECHVCGRLFSQNSHLIRHQNVHTREKTYECSQCGKFFMDSSTLMVHQRVHTGEKPYECSECGKVFRYNSSLIKHRRIHTGEKPYECINCGRSFSQNSHLIRHQEVHAKEYCRQRKTAKKSLV", "length": 534, "header": "tr|A0A5G2QH93-1|A0A5G2QH93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261321 PE=3 SV=1 CANONICAL=A0A5G2QH93-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93/entry", "sequence": { "sequence": "MRGPLSPQLTAVPSFPPCSPPLPAPLFPRPVAEAAPMNPAQGRVVFEDVAIHFSQDEWCLLDEAQRLLYWRVMLQNIALLSSVGCWHRAQAEEAEQGDSVRVSQVKTPKMHSPLLKDILRLAEHDGTQPEHEVYVCAASLSPQRTVMGREGGQDLPASPGLLQHSAPHNGGTLPSQWRETFENGHNDYRCSQCGKTFSHKYVLVEHQKHHTGEKRYHPSESGELFISRFRLVQHQEIHTEVKLLEHVGCGRFFTRTSGLIEHRRVRTRPVPYKCHQCGKCVKDSATLLVHQRVHTGEKPYKCSECGKFFRYSFTLKRHQRVHAGERPYECSVCGKFFVDSSTLLIHQRVHTRGRRFECNKCGQFFRYSFTLERHQKAHTGERPYECRECGKLFRHNSNHIRHRRNHTGERPYECHVCGRLFSQNSHLIRHQNVHTREKTYECSQCGKFFMDSSTLMVHQRVHTGEKPYECSECGKVFRYNSSLIKHRRIHTGEKPYECINCGRSFSQNSHLIRHQEVHAKEYCRQRKTAKKSLV", "length": 534, "header": "tr|A0A5G2QH93-1|A0A5G2QH93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261321 PE=3 SV=1 CANONICAL=A0A5G2QH93-1" }, "locus": { "chromosome": "6", "start_pos": 61896099, "end_pos": 61889921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070740.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070740.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063709.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QH93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 534, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QH93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QH93" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 188, "end_pos": 215, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QH93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH93" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 138, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 405, "end_pos": 407 }, { "start_pos": 480, "end_pos": 482 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHA0-1", "uniprot_ac": "A0A5G2QHA0", "uniprot_id": "A0A5G2QHA0_PIG", "mass": { "chemical_mass": 24504.0, "monoisotopic_mass": 24504.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "PABIR family member 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QHA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHA0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030908", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030908", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22227:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22227:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS02", "url": "https://www.uniprot.org/uniprotkb/K7GS02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS02-1", "url": "https://www.uniprot.org/uniprotkb/K7GS02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRGRPVFVSTGVKDGRAAKVSTHSSKSYPLSSLFPLFFSPYLSSPHLVDLFLSEPEQGNLESSEVSFGTDLSQEKMEVALKLQPSSATTDDNTLRRSNSAPLISGLGDNSQVFQADTLGTRRNSAFLAQHCPLVLSSPSQASVSCLDQNKQEEGMDLANKETMYQWEVQTVIQLNQSWKESLKLSNNDLEKPSSPKCTDLIPVSPVASVTWGIRKSIFICSW", "length": 223, "header": "tr|A0A5G2QHA0-1|A0A5G2QHA0_PIG Isoform 1 of PABIR family member 3 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QHA0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0/entry", "sequence": { "sequence": "MLRGRPVFVSTGVKDGRAAKVSTHSSKSYPLSSLFPLFFSPYLSSPHLVDLFLSEPEQGNLESSEVSFGTDLSQEKMEVALKLQPSSATTDDNTLRRSNSAPLISGLGDNSQVFQADTLGTRRNSAFLAQHCPLVLSSPSQASVSCLDQNKQEEGMDLANKETMYQWEVQTVIQLNQSWKESLKLSNNDLEKPSSPKCTDLIPVSPVASVTWGIRKSIFICSW", "length": 223, "header": "tr|A0A5G2QHA0-1|A0A5G2QHA0_PIG Isoform 1 of PABIR family member 3 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QHA0-1" }, "locus": { "chromosome": "X", "start_pos": 110658827, "end_pos": 110622355, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078897.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078897.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064163.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064163.2" } ] } }, { "isoform_ac": "K7GS02-1", "url": "https://www.uniprot.org/uniprotkb/K7GS02/entry", "sequence": { "sequence": "MLRGRPVFVSTGVKDGRAAKVSTHSSKSYPLSSLFPLFFSPYLSSPHLVDLFLSEPEQGNLESSEVSFGTDLSQEKMEVALKLQPSSATTDDNTLRRSNSAPLISGLGDNSQVFQADTLGTRRNSAFLAQHCPLVLSSPSQASVSCLDQNKQEEGMDLANKETMYQWEVQTVIQLNQSWKESLKLSIFICSW", "length": 192, "header": "tr|K7GS02-1|K7GS02_PIG Computationally mapped isoform of PABIR family member 3 OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=A0A5G2QHA0-1" }, "locus": { "chromosome": "X", "start_pos": 110658827, "end_pos": 110622355, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035919.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035919.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030682.4", "url": "https://www.ensembl.org/id/ENSSSCP00000030682.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase inhibitor activity", "id": "GO:0004865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004865", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 223, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHA0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 176, "end_pos": 178 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHB5-1", "uniprot_ac": "A0A5G2QHB5", "uniprot_id": "A0A5G2QHB5_PIG", "mass": { "chemical_mass": 51631.0, "monoisotopic_mass": 51631.0 }, "refseq": {}, "gene_names": [ { "name": "MINDY4B", "type": "recommended", "evidence": [ { "id": "A0A5G2QHB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ] } ], "protein_names": [ { "name": "MINDY family member 4B", "type": "synonym", "evidence": [ { "id": "A0A5G2QHB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MINDY4B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5", "locus": { "chromosome": "13", "start_pos": 91048861, "end_pos": 91082576, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047943", "url": "https://www.ensembl.org/id/ENSSSCG00000047943" } ] } } ], "crossref": [ { "id": "A0A5G2QHB5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047943", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047943", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR025257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12473", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12473", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12473:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12473:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13898", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13898", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMEPLDQEQSSQELDLEEIARKISLLDRWREIFSYHRLGTNNTTSQNHEGNRISAGETEDGTGTPRPKGQGHLPSSSLCSIPKPSIISSKSGGFPISLAMATKLRQSLFGNTIQVFSYDWTKAYFRFHDPFSDLAFALEVGKGSAQSIQMAVQGSIIKHLLFTRKGKDCNFLSLCTISKQEQERALAAALAGILWAAGAAQKATICLFTEDTHIALTPDYSRDGFTERLQLFELLEKEATEKFIYDHLQCFKGEGSHGVILFLYSLIFSRTFERLQKDLDVSTTYLLQPNAGGFLCSQAVLNMVLTGRARPHVFNGCQKGKSQEMLHGVLTRSDVGYLQWGKTTSEDNGFSQVGSMLKTPKLPIWLCNINGNYSILFSTNRQLLSDWKTERFFDLYFYSGQPAQSKPAHLTVDTHSHHWERVQREDEHRPGRFSPVEMTIRTKWEATINWNGTAPFF", "length": 458, "header": "tr|A0A5G2QHB5-1|A0A5G2QHB5_PIG Isoform 1 of MINDY family member 4B OS=Sus scrofa OX=9823 GN=MINDY4B PE=3 SV=1 CANONICAL=A0A5G2QHB5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5/entry", "sequence": { "sequence": "MAMEPLDQEQSSQELDLEEIARKISLLDRWREIFSYHRLGTNNTTSQNHEGNRISAGETEDGTGTPRPKGQGHLPSSSLCSIPKPSIISSKSGGFPISLAMATKLRQSLFGNTIQVFSYDWTKAYFRFHDPFSDLAFALEVGKGSAQSIQMAVQGSIIKHLLFTRKGKDCNFLSLCTISKQEQERALAAALAGILWAAGAAQKATICLFTEDTHIALTPDYSRDGFTERLQLFELLEKEATEKFIYDHLQCFKGEGSHGVILFLYSLIFSRTFERLQKDLDVSTTYLLQPNAGGFLCSQAVLNMVLTGRARPHVFNGCQKGKSQEMLHGVLTRSDVGYLQWGKTTSEDNGFSQVGSMLKTPKLPIWLCNINGNYSILFSTNRQLLSDWKTERFFDLYFYSGQPAQSKPAHLTVDTHSHHWERVQREDEHRPGRFSPVEMTIRTKWEATINWNGTAPFF", "length": 458, "header": "tr|A0A5G2QHB5-1|A0A5G2QHB5_PIG Isoform 1 of MINDY family member 4B OS=Sus scrofa OX=9823 GN=MINDY4B PE=3 SV=1 CANONICAL=A0A5G2QHB5-1" }, "locus": { "chromosome": "13", "start_pos": 91082576, "end_pos": 91048864, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073524.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073524.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061403.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061403.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ], "pmid": "" }, { "name": "K48-linked deubiquitinase activity", "id": "GO:1990380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein K48-linked deubiquitination", "id": "GO:0071108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071108", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHB5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 458, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHB5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB5" }, { "id": "SM01174", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Deubiquitinating enzyme MINDY-3/4 conserved", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 453, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 373, "end_pos": 375 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 452, "end_pos": 454 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHB8-1", "uniprot_ac": "A0A5G2QHB8", "uniprot_id": "A0A5G2QHB8_PIG", "mass": { "chemical_mass": 14051.0, "monoisotopic_mass": 14051.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHB8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041834", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041834", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000552", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000552", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00935", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00935", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRHQPNKVTQDKKGKDVLCAQGKRCYTGSRVAMVGRLGRFSGKRLKLQRRLECADPNCRSKRMLAIRRCTPFELGGDTKRKGQAIQFCASYFYYEDNTILRLFPFGFSCFFGREINYYQ", "length": 120, "header": "tr|A0A5G2QHB8-1|A0A5G2QHB8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QHB8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8/entry", "sequence": { "sequence": "MRRHQPNKVTQDKKGKDVLCAQGKRCYTGSRVAMVGRLGRFSGKRLKLQRRLECADPNCRSKRMLAIRRCTPFELGGDTKRKGQAIQFCASYFYYEDNTILRLFPFGFSCFFGREINYYQ", "length": 120, "header": "tr|A0A5G2QHB8-1|A0A5G2QHB8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QHB8-1" }, "locus": { "chromosome": "10", "start_pos": 5784719, "end_pos": 5784360, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098821.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098821.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081113.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081113.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHB8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHB8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHD0-1", "uniprot_ac": "A0A5G2QHD0", "uniprot_id": "A0A5G2QHD0_PIG", "mass": { "chemical_mass": 15009.0, "monoisotopic_mass": 15009.0 }, "refseq": {}, "gene_names": [ { "name": "ASPHD1", "type": "recommended", "evidence": [ { "id": "A0A5G2QHD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0" } ] } ], "protein_names": [ { "name": "Aspartate beta-hydroxylase domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QHD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASPHD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHD0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040342", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040342", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007803", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TFANGRC", "url": "https://omabrowser.org/oma/group/TFANGRC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46332", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46332", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46332:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46332:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NUL1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NUL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NUL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NUL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GASRRESERGRGRGRERENPRVGSSEKQGQEGEGVGRRERSRCGGRLVAGSRRLVAGSRGCGSRWGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVVFIVDLWHPNVAGAERQALDFVFAPDP", "length": 139, "header": "tr|A0A5G2QHD0-1|A0A5G2QHD0_PIG Isoform 1 of Aspartate beta-hydroxylase domain containing 1 OS=Sus scrofa OX=9823 GN=ASPHD1 PE=3 SV=1 CANONICAL=A0A5G2QHD0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0/entry", "sequence": { "sequence": "GASRRESERGRGRGRERENPRVGSSEKQGQEGEGVGRRERSRCGGRLVAGSRRLVAGSRGCGSRWGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVVFIVDLWHPNVAGAERQALDFVFAPDP", "length": 139, "header": "tr|A0A5G2QHD0-1|A0A5G2QHD0_PIG Isoform 1 of Aspartate beta-hydroxylase domain containing 1 OS=Sus scrofa OX=9823 GN=ASPHD1 PE=3 SV=1 CANONICAL=A0A5G2QHD0-1" }, "locus": { "chromosome": "3", "start_pos": 18124351, "end_pos": 18120582, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081324.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081324.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061418.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061418.1" } ] } }, { "isoform_ac": "A0A8D1NUL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NUL1/entry", "sequence": { "sequence": "MSANTFGNAGFSVLLPGARLEGRCGPTNARVRCHLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVVFIVDLWHPNVAGAERQALDFVFAPDP", "length": 109, "header": "tr|A0A8D1NUL1-1|A0A8D1NUL1_PIG Computationally mapped isoform of Aspartate beta-hydroxylase domain containing 1 OS=Sus scrofa OX=9823 GN=ASPHD1 PE=3 SV=1 CANONICAL=A0A5G2QHD0-1" }, "locus": { "chromosome": "3", "start_pos": 18124351, "end_pos": 18121886, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057159.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057159.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053313.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053313.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHD0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 139, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHD0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD0" }, { "id": "PF05118", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aspartyl/asparaginy/proline hydroxylase", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 121, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHD3-1", "uniprot_ac": "A0A5G2QHD3", "uniprot_id": "A0A5G2QHD3_PIG", "mass": { "chemical_mass": 27492.0, "monoisotopic_mass": 27492.0 }, "refseq": {}, "gene_names": [ { "name": "C17H20orf173", "type": "recommended", "evidence": [ { "id": "A0A5G2QHD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ] } ], "protein_names": [ { "name": "Chromosome 17 C20orf173 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QHD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C17H20orf173", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049711", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049711", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR038578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46032", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46032", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46032:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46032:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSLCPHTFYPRPSGVLFREPGRGAVSYQTLEPSPGPDMKRSWQIFVLWVFWVFILWLMVPCLDPKHEWAPQEKWINMVPWRCCCPWFKCRISGYPSRTLNYSLCHDTVRRDQFDAGNQKMKGYLMGAAESTSPNAVLWWLGMHSASELGKVWKKLLEAIPRPSVSHLHLFCGSCALTGNSKILRATSLHSNVNQYSVVSRNARDQGSWRQLLLLLPKLFDLAWTSDVLSEEILEDGPVP", "length": 240, "header": "tr|A0A5G2QHD3-1|A0A5G2QHD3_PIG Isoform 1 of Chromosome 17 C20orf173 homolog OS=Sus scrofa OX=9823 GN=C17H20orf173 PE=4 SV=2 CANONICAL=A0A5G2QHD3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3/entry", "sequence": { "sequence": "MLSLCPHTFYPRPSGVLFREPGRGAVSYQTLEPSPGPDMKRSWQIFVLWVFWVFILWLMVPCLDPKHEWAPQEKWINMVPWRCCCPWFKCRISGYPSRTLNYSLCHDTVRRDQFDAGNQKMKGYLMGAAESTSPNAVLWWLGMHSASELGKVWKKLLEAIPRPSVSHLHLFCGSCALTGNSKILRATSLHSNVNQYSVVSRNARDQGSWRQLLLLLPKLFDLAWTSDVLSEEILEDGPVP", "length": 240, "header": "tr|A0A5G2QHD3-1|A0A5G2QHD3_PIG Isoform 1 of Chromosome 17 C20orf173 homolog OS=Sus scrofa OX=9823 GN=C17H20orf173 PE=4 SV=2 CANONICAL=A0A5G2QHD3-1" }, "locus": { "chromosome": "17", "start_pos": 38876215, "end_pos": 38874800, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089755.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089755.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063245.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063245.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "beta-galactoside (CMP) alpha-2,3-sialyltransferase activity", "id": "GO:0003836", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003836", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sialylation", "id": "GO:0097503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHD3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 240, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHD3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHD5-1", "uniprot_ac": "A0A5G2QHD5", "uniprot_id": "A0A5G2QHD5_PIG", "mass": { "chemical_mass": 24044.0, "monoisotopic_mass": 24044.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Calponin-homology (CH) domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QHD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049415", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049415", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10878", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10878", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10878:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10878:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTQVVVRLCNSRLPPEPSQQLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQTSPSNQQEMKNNVEKVLQFVASKKIRMHQTSAKDIVEGNLKSIMRLVLALAAHFKPGSSRTVSQGRDAGAPLQSHQPHCATAVAQGAAAALADVCHDMSRSGRDVFRYRQRNSSVDEEIENPCWSVRALVQQYEGQQRSPSESSCSR", "length": 218, "header": "tr|A0A5G2QHD5-1|A0A5G2QHD5_PIG Isoform 1 of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHD5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5/entry", "sequence": { "sequence": "MGTQVVVRLCNSRLPPEPSQQLQAYVAWVNAQLKKRPAVKPVQDLRQDLRDGVILAYLIEIVAGEKLSGVQTSPSNQQEMKNNVEKVLQFVASKKIRMHQTSAKDIVEGNLKSIMRLVLALAAHFKPGSSRTVSQGRDAGAPLQSHQPHCATAVAQGAAAALADVCHDMSRSGRDVFRYRQRNSSVDEEIENPCWSVRALVQQYEGQQRSPSESSCSR", "length": 218, "header": "tr|A0A5G2QHD5-1|A0A5G2QHD5_PIG Isoform 1 of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHD5-1" }, "locus": { "chromosome": "9", "start_pos": 39694108, "end_pos": 39657977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079652.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079652.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063759.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063759.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 218, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD5" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 126, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHD8-1", "uniprot_ac": "A0A5G2QHD8", "uniprot_id": "A0A5G2QHD8_PIG", "mass": { "chemical_mass": 14723.0, "monoisotopic_mass": 14723.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041021", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041021", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RAHLTVVGCGHGSESGHSRAELPDYTLGEKTGAGGLLETLQKGAQEGAEGPPENWRYPGGTLVAPAVYGEQSELLGCSGGRAAFAVGRTTVGVTPRLETQQNWGSRTVPARVGDAVQTQTPLSPLPTWLVHVSLKRGRNPS", "length": 141, "header": "tr|A0A5G2QHD8-1|A0A5G2QHD8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHD8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8/entry", "sequence": { "sequence": "RAHLTVVGCGHGSESGHSRAELPDYTLGEKTGAGGLLETLQKGAQEGAEGPPENWRYPGGTLVAPAVYGEQSELLGCSGGRAAFAVGRTTVGVTPRLETQQNWGSRTVPARVGDAVQTQTPLSPLPTWLVHVSLKRGRNPS", "length": 141, "header": "tr|A0A5G2QHD8-1|A0A5G2QHD8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHD8-1" }, "locus": { "chromosome": "10", "start_pos": 66663755, "end_pos": 66662534, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084419.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084419.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063250.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063250.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 94, "start_aa": "Thr", "end_pos": 94, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr94", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHD8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 141, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHD8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHD8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 94 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHE2-1", "uniprot_ac": "A0A5G2QHE2", "uniprot_id": "A0A5G2QHE2_PIG", "mass": { "chemical_mass": 47014.0, "monoisotopic_mass": 47014.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF584", "type": "recommended", "evidence": [ { "id": "A0A5G2QHE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ] } ], "protein_names": [ { "name": "Zinc finger protein 584", "type": "synonym", "evidence": [ { "id": "A0A5G2QHE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF584", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2", "locus": { "chromosome": "6", "start_pos": 63005691, "end_pos": 62992506, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004004", "url": "https://www.ensembl.org/id/ENSSSCG00000004004" } ] } } ], "crossref": [ { "id": "A0A5G2QHE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004004", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004004", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519782", "url": "https://www.ncbi.nlm.nih.gov/gene/100519782", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519782", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519782", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WVPSMVD", "url": "https://omabrowser.org/oma/group/WVPSMVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1C0P4", "url": "https://www.orthodb.org/?gene=A0A8D1C0P4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1C0P4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C0P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1C0P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C0P4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEAQGRVTFDDVAVYFSREEWGLLDSTQRGLYHDVMLENFTLVGSLGLVPLRSPVVAQMEGKEGPWVPNTDMTAISRAEARRGHSLGCLCRLQDKEAPPQQRKSCRVLQPQTTHREGNPCRSTKCRGTFPPTSSCQQQQGGHATEKPFKCSSCGQAFLKAFALLDHLITHSKDRPFRCPPDGNASKESSSLVHHQKIHTGESSHVCSECGKAFTYPSKLRKHQKVHTGIKPFECGECGKTFNRKDALVLHQRIHTGERPYECSECGKSFSVLSTLIRHRKVHIGERPYECRECGKFFKYNHSFMLHQRVHTGERPYECKQCAKTYVTRSGLYQHWKVHTGERPYACSLCGKTFTTRSYRNRHQQFHTEERSYECTECGKVFKHSSTLLQHKKVHIGERSRGCGKAFRHAW", "length": 412, "header": "tr|A0A5G2QHE2-1|A0A5G2QHE2_PIG Isoform 1 of Zinc finger protein 584 OS=Sus scrofa OX=9823 GN=ZNF584 PE=3 SV=2 CANONICAL=A0A5G2QHE2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2/entry", "sequence": { "sequence": "MAEEAQGRVTFDDVAVYFSREEWGLLDSTQRGLYHDVMLENFTLVGSLGLVPLRSPVVAQMEGKEGPWVPNTDMTAISRAEARRGHSLGCLCRLQDKEAPPQQRKSCRVLQPQTTHREGNPCRSTKCRGTFPPTSSCQQQQGGHATEKPFKCSSCGQAFLKAFALLDHLITHSKDRPFRCPPDGNASKESSSLVHHQKIHTGESSHVCSECGKAFTYPSKLRKHQKVHTGIKPFECGECGKTFNRKDALVLHQRIHTGERPYECSECGKSFSVLSTLIRHRKVHIGERPYECRECGKFFKYNHSFMLHQRVHTGERPYECKQCAKTYVTRSGLYQHWKVHTGERPYACSLCGKTFTTRSYRNRHQQFHTEERSYECTECGKVFKHSSTLLQHKKVHIGERSRGCGKAFRHAW", "length": 412, "header": "tr|A0A5G2QHE2-1|A0A5G2QHE2_PIG Isoform 1 of Zinc finger protein 584 OS=Sus scrofa OX=9823 GN=ZNF584 PE=3 SV=2 CANONICAL=A0A5G2QHE2-1" }, "locus": { "chromosome": "6", "start_pos": 63004333, "end_pos": 62992797, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079210.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079210.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064208.2" } ] } }, { "isoform_ac": "A0A8D1C0P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1C0P4/entry", "sequence": { "sequence": "MAEEAQGRVTFDDVAVYFSREEWGLLDSTQRGLYHDVMLENFTLVGSLGCLCRLQDKEAPPQQRKSCRVLLPEKPVLCRASGKAISATLSFLQPQTTHREGNPCRSTKCRGTFPPTSSCQQQQGGHATEKPFKCSSCGQAFLKAFALLDHLITHSKDRPFRCPPDGNASKESSSLVHHQKIHTGESSHVCSECGKAFTYPSKLRKHQKVHTGIKPFECGECGKTFNRKDALVLHQRIHTGERPYECSECGKSFSVLSTLIRHRKVHIGERPYECRECGKFFKYNHSFMLHQRVHTGERPYECKQCAKTYVTRSGLYQHWKVHTGERPYACSLCGKTFTTRSYRNRHQQFHTEERSYECTECGKVFKHSSTLLQHKKVHIGERS", "length": 383, "header": "tr|A0A8D1C0P4-1|A0A8D1C0P4_PIG Computationally mapped isoform of Zinc finger protein 584 OS=Sus scrofa OX=9823 GN=ZNF584 PE=3 SV=1 CANONICAL=A0A5G2QHE2-1" }, "locus": { "chromosome": "6", "start_pos": 63004295, "end_pos": 62992797, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004427.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004427.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004326.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004326.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519782", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519782", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8IVC4-1", "protein_name": "Zinc finger protein 584", "gene_name": "ZNF584", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGEAEAQLDPSLQGLVMFEDVTVYFSREEWGLLNVTQKGLYRDVMLENFALVSSLGLAPSRSPVFTQLEDDEQSWVPSWVDVTPVSRAEARRGFGLDGLCRVEDERAHPEHLKSYRVIQHQDTHSEGKPRRHTEHGAAFPPGSSCGQQQEVHVAEKLFKCSDCGKVFLKAFALLDHLITHSEERPFRCPTGRSAFKKSAHINPRKIHTGETAHVCNECGKAFSYPSKLRKHQKVHTGIKPFKCSDCGKTFNRKDALVLHQRIHTGERPYECSKCGKTFSVLSTLIRHRKVHIGERPYECTECGKFFKYNNSFILHQRVHTGERPFECKQCGKGYVTRSGLYQHWKVHTGERPYECSLCGKTFTTRSYRNRHQQFHTEERSYECTECGKAFKHSSTLLQHKKVHTPERRQEDRAHGKVVSC", "length": 421 }, "evidence": [ { "id": "A0A5G2QHE2", "url": "https://omabrowser.org/oma/group/A0A5G2QHE2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 412, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHE2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 177, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHE2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 80, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHF6-1", "uniprot_ac": "A0A5G2QHF6", "uniprot_id": "A0A5G2QHF6_PIG", "mass": { "chemical_mass": 34327.0, "monoisotopic_mass": 34327.0 }, "refseq": {}, "gene_names": [ { "name": "C3H16orf54", "type": "recommended", "evidence": [ { "id": "A0A5G2QHF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6" } ] } ], "protein_names": [ { "name": "Chromosome 3 C16orf54 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QHF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C3H16orf54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHF6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029752", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029752", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623246", "url": "https://www.ncbi.nlm.nih.gov/gene/100623246", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1AVX4", "url": "https://www.orthodb.org/?gene=A0A8D1AVX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36134:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36134:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1AVX4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AVX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1AVX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AVX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPTPEQPSGPMEEPLALAASSWPPLPCGPCVPIMLVLAALAAVFLLTTAVLAERLFRRSLRPDPGTLAPTLVWRPGGELWIEPTGTPRERSEDWYGSSVPLLMDRAPDPPTLGGTLEARATAPPAPNSPRNSLVPQTPPQAPARSTFWRPQVWEERPGGSGQEALIPSGASSLGSPWRRSQLSGGVKAGPAWVFDPQGLEDWPPEASETSESPSPHLRASPPQARMPLPGCLLWGFQFLWIWAWAAWVWMEPVLQRSLEWPLLSCQGLRHRELDLGPALGLKLPKSHSELRTQGTRQAGNSTSTLLQQAPKMPAL", "length": 316, "header": "tr|A0A5G2QHF6-1|A0A5G2QHF6_PIG Isoform 1 of Chromosome 3 C16orf54 homolog OS=Sus scrofa OX=9823 GN=C3H16orf54 PE=4 SV=1 CANONICAL=A0A5G2QHF6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6/entry", "sequence": { "sequence": "MPPTPEQPSGPMEEPLALAASSWPPLPCGPCVPIMLVLAALAAVFLLTTAVLAERLFRRSLRPDPGTLAPTLVWRPGGELWIEPTGTPRERSEDWYGSSVPLLMDRAPDPPTLGGTLEARATAPPAPNSPRNSLVPQTPPQAPARSTFWRPQVWEERPGGSGQEALIPSGASSLGSPWRRSQLSGGVKAGPAWVFDPQGLEDWPPEASETSESPSPHLRASPPQARMPLPGCLLWGFQFLWIWAWAAWVWMEPVLQRSLEWPLLSCQGLRHRELDLGPALGLKLPKSHSELRTQGTRQAGNSTSTLLQQAPKMPAL", "length": 316, "header": "tr|A0A5G2QHF6-1|A0A5G2QHF6_PIG Isoform 1 of Chromosome 3 C16orf54 homolog OS=Sus scrofa OX=9823 GN=C3H16orf54 PE=4 SV=1 CANONICAL=A0A5G2QHF6-1" }, "locus": { "chromosome": "3", "start_pos": 18013378, "end_pos": 18012352, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083144.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083144.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064223.1" } ] } }, { "isoform_ac": "A0A8D1AVX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AVX4/entry", "sequence": { "sequence": "MLGRAGNGGSQFLTQQLPLLRRPEGAEMVGVGPAGGGTKTLGPLDVCLRHPGIWEDRAASGTGLRMPSRRAWLQTQMPPTPEQPSGPMEEPLALAASSWPPLPCGPCVPIMLVLAALAAVFLLTTAVLAERLFRRSLRPDPGTLAPTLVWRPGGELWIEPTGTPRERSEDWYGSSVPLLMDRAPDPPTLGGTLEARATAPPAPNSPRNSLVPQTPPQAPARSTFWRPQVWEERPHAPGLVSWAEPEQRPEASGYLGSPQARRQRPGSPDPEWGLQPRVTLEEISAFWRREGRTSVGF", "length": 297, "header": "tr|A0A8D1AVX4-1|A0A8D1AVX4_PIG Computationally mapped isoform of Chromosome 3 C16orf54 homolog OS=Sus scrofa OX=9823 GN=C3H16orf54 PE=4 SV=1 CANONICAL=A0A5G2QHF6-1" }, "locus": { "chromosome": "3", "start_pos": 18013829, "end_pos": 18012716, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031601.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031601.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024980.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024980.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 4, "start_aa": "Thr", "end_pos": 4, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr4", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHF6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 4 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHF9-1", "uniprot_ac": "A0A5G2QHF9", "uniprot_id": "A0A5G2QHF9_PIG", "mass": { "chemical_mass": 29678.0, "monoisotopic_mass": 29678.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QHF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHF9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043849", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043849", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKMMQDIGNKLQAKMDNLQETLTKEMQDIKLKQEEMQNTITEIKNSLEAANSRIQEAEERISEVEDRLVEIMNAEQKREKRLKTNESLRELWDNVKHSNIHIIGVPEGEEREKGTEKIFREIRAENFPKMGKEPLTQIQEVQQVPYKINPRRNTLRHILIKLTKIKDKEKILKAAREKKQVTYKGTPIRLWADFSAETLQARREWHLILNVMKGKNLQLRLPYPARFSLRFEGEIKTFTDKQKLSIQQY", "length": 250, "header": "tr|A0A5G2QHF9-1|A0A5G2QHF9_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QHF9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9/entry", "sequence": { "sequence": "MLKMMQDIGNKLQAKMDNLQETLTKEMQDIKLKQEEMQNTITEIKNSLEAANSRIQEAEERISEVEDRLVEIMNAEQKREKRLKTNESLRELWDNVKHSNIHIIGVPEGEEREKGTEKIFREIRAENFPKMGKEPLTQIQEVQQVPYKINPRRNTLRHILIKLTKIKDKEKILKAAREKKQVTYKGTPIRLWADFSAETLQARREWHLILNVMKGKNLQLRLPYPARFSLRFEGEIKTFTDKQKLSIQQY", "length": 250, "header": "tr|A0A5G2QHF9-1|A0A5G2QHF9_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QHF9-1" }, "locus": { "chromosome": "13", "start_pos": 126638002, "end_pos": 126637253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070090.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070090.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063784.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063784.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHF9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 194, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHF9" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 197, "end_pos": 245, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHH2-1", "uniprot_ac": "A0A5G2QHH2", "uniprot_id": "A0A5G2QHH2_PIG", "mass": { "chemical_mass": 82893.0, "monoisotopic_mass": 82893.0 }, "refseq": {}, "gene_names": [ { "name": "CMIP", "type": "recommended", "evidence": [ { "id": "A0A5G2QHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ] } ], "protein_names": [ { "name": "C-Maf-inducing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CMIP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2", "locus": { "chromosome": "6", "start_pos": 6654411, "end_pos": 6881813, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002689", "url": "https://www.ensembl.org/id/ENSSSCG00000002689" } ] } } ], "crossref": [ { "id": "A0A5G2QHH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002689", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002689", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056429", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056429", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR25480", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR25480", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR25480:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR25480:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AG75", "url": "https://www.uniprot.org/uniprotkb/A0A287AG75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AG75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S474", "url": "https://www.uniprot.org/uniprotkb/F1S474", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S474-1", "url": "https://www.uniprot.org/uniprotkb/F1S474-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLTSSSGGGDPRQIEETKPLLGGDVPAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDIQVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVEPASTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTGVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW", "length": 745, "header": "tr|A0A5G2QHH2-1|A0A5G2QHH2_PIG Isoform 1 of C-Maf-inducing protein OS=Sus scrofa OX=9823 GN=CMIP PE=4 SV=1 CANONICAL=A0A5G2QHH2-1" }, "isoforms": [ { "isoform_ac": "A0A287AG75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG75/entry", "sequence": { "sequence": "MRYKLLQEGDIQVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVEPASTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTGVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW", "length": 724, "header": "tr|A0A287AG75-1|A0A287AG75_PIG Computationally mapped isoform of C-Maf-inducing protein OS=Sus scrofa OX=9823 GN=CMIP PE=4 SV=2 CANONICAL=A0A5G2QHH2-1" }, "locus": { "chromosome": "6", "start_pos": 6881470, "end_pos": 6655124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039878.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039878.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042858.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042858.2" } ] } }, { "isoform_ac": "A0A5G2QHH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2/entry", "sequence": { "sequence": "MDLTSSSGGGDPRQIEETKPLLGGDVPAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDIQVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVEPASTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTGVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW", "length": 745, "header": "tr|A0A5G2QHH2-1|A0A5G2QHH2_PIG Isoform 1 of C-Maf-inducing protein OS=Sus scrofa OX=9823 GN=CMIP PE=4 SV=1 CANONICAL=A0A5G2QHH2-1" }, "locus": { "chromosome": "6", "start_pos": 6881614, "end_pos": 6655124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072957.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072957.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061463.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061463.1" } ] } }, { "isoform_ac": "F1S474-1", "url": "https://www.uniprot.org/uniprotkb/F1S474/entry", "sequence": { "sequence": "MLSSTAGGHPLERSRQSQPGSRQAPFAQRLQELPCSLSFNDGWGEHACLCEPPRRLRQAAARQPQHREACFQHVLSHTSPGEGHLPGDSLSPVEKPPGSALRGRRTRASVAACAVGAVAGEMAAVAQKKIYKYKKVLSNPSRWEVVLKEIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFCKDFGKCPRLRLFTQEYILALNELNAGMEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVEPASTAKPALTASAGNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIISTLESTGVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW", "length": 714, "header": "tr|F1S474-1|F1S474_PIG Computationally mapped isoform of C-Maf-inducing protein OS=Sus scrofa OX=9823 GN=CMIP PE=4 SV=4 CANONICAL=A0A5G2QHH2-1" }, "locus": { "chromosome": "6", "start_pos": 6706178, "end_pos": 6655124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002982.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002982.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002903.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002903.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 645, "end_pos": 647, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHH2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 745, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHH2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHH2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH2" }, { "id": "PF23066", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23066" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-Maf-inducing protein PH", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 168, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 552, "end_pos": 554 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 645, "end_pos": 647 }, { "start_pos": 715, "end_pos": 717 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHH9-1", "uniprot_ac": "A0A5G2QHH9", "uniprot_id": "A0A5G2QHH9_PIG", "mass": { "chemical_mass": 50721.0, "monoisotopic_mass": 50721.0 }, "refseq": { "ac": "XP_003135101", "name": "properdin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135101" }, "gene_names": [ { "name": "CFP", "type": "recommended", "evidence": [ { "id": "A0A5G2QHH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ] }, { "name": "CFP", "type": "synonym", "evidence": [ { "id": "XP_003135101", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135101" } ] } ], "protein_names": [ { "name": "Complement factor properdin", "type": "synonym", "evidence": [ { "id": "A0A5G2QHH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9/entry#names_and_taxonomy" } ] }, { "name": "properdin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003135101", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135101" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9", "locus": { "chromosome": "X", "start_pos": 42143697, "end_pos": 42152868, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012278", "url": "https://www.ensembl.org/id/ENSSSCG00000012278" } ] } } ], "crossref": [ { "id": "A0A5G2QHH9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHH9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522293", "url": "https://www.ncbi.nlm.nih.gov/gene/100522293", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522293", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522293", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQACRSP", "url": "https://omabrowser.org/oma/group/CQACRSP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QHH9", "url": "https://www.orthodb.org/?gene=A0A5G2QHH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22906:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22906:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173736", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173736", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003135101", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135101", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPTQRQAPQLLLLPLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSLEDCCLNADYAFQETSSKFCMPCRPPQWSPWSAWAPCSVTCTEGSQLRHRRCVGWGGQCPENVELGTLQWQLQACENQPCCPEMGGWSSWGPWAPCSATCSRGTRTRRRACDRPTPKCGGHCPGEAQESEDCDTQQVCPTHGAWAAWGPWGPCQSTCKGGPSEPVERRKRTCTAPEPSTKPPGNPCSGSANDQRMCSGLPPCPVAGGWGPWGAVSPCPVTCGLGQTREQRSCDHPVPQHGGPFCVGEAFRTHICNTAVPCPVDGEWGLWGEWSNCVRRGIKHISCQEIPGQQTRSRICKGRKFDGRRCLGEQQDIRHCYSIQRCPLKEASWSEWSTWGLCIPPCGPSPVRTRQRLCQPKLPNFPPTITPVEGQGEKNVTFWGKPLVKCDVLQGQHMMVEEKRPCLHAPPCNEP", "length": 463, "header": "tr|A0A5G2QHH9-1|A0A5G2QHH9_PIG Isoform 1 of Complement factor properdin OS=Sus scrofa OX=9823 GN=CFP PE=1 SV=2 CANONICAL=A0A5G2QHH9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9/entry", "sequence": { "sequence": "MPTQRQAPQLLLLPLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSLEDCCLNADYAFQETSSKFCMPCRPPQWSPWSAWAPCSVTCTEGSQLRHRRCVGWGGQCPENVELGTLQWQLQACENQPCCPEMGGWSSWGPWAPCSATCSRGTRTRRRACDRPTPKCGGHCPGEAQESEDCDTQQVCPTHGAWAAWGPWGPCQSTCKGGPSEPVERRKRTCTAPEPSTKPPGNPCSGSANDQRMCSGLPPCPVAGGWGPWGAVSPCPVTCGLGQTREQRSCDHPVPQHGGPFCVGEAFRTHICNTAVPCPVDGEWGLWGEWSNCVRRGIKHISCQEIPGQQTRSRICKGRKFDGRRCLGEQQDIRHCYSIQRCPLKEASWSEWSTWGLCIPPCGPSPVRTRQRLCQPKLPNFPPTITPVEGQGEKNVTFWGKPLVKCDVLQGQHMMVEEKRPCLHAPPCNEP", "length": 463, "header": "tr|A0A5G2QHH9-1|A0A5G2QHH9_PIG Isoform 1 of Complement factor properdin OS=Sus scrofa OX=9823 GN=CFP PE=1 SV=2 CANONICAL=A0A5G2QHH9-1" }, "locus": { "chromosome": "X", "start_pos": 42152622, "end_pos": 42146085, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076672.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076672.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061473.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061473.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522293", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522293", "resource": "KEGG Pathway" }, { "id": "R-SSC-173736", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173736", "resource": "Reactome", "description": "Alternative complement activation" }, { "id": "R-SSC-174577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174577", "resource": "Reactome", "description": "Activation of C3 and C5" }, { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061HYL4-1", "protein_name": "Properdin isoform X1", "gene_name": "Cfp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLAGMQAPPTLLLLLLTLPATGSDPVFCFTKYEESSGKCKGLLGGDVSVEDCCLNAAYAFQEHGGGPCQACRSPRWSPWSSWAPCSVTCSEGSQLRHRRCVGRGGQCSEKVAPRTLEWQLQACEDQPCCPEIGGWSEWGPWGPCSVTCSKGTRTRQRLCDNPAPKCGGHCPEEAQQSQACDTQKVCPTHGAWAAWGPWSSCSGSCLGGTEQPKETRSRSCSAPAPSHQPPGKPCLGSAYEHRGCSGLPPCPVPGGWGPWSPVSPCSVTCGLGQTLERRTCDHPVPRHGGLFCAGDATRTHICNTATPCPVNGEWEEWGKWSHCSRVNMKSISCEEIPGQQSRTRSCGGRKFNGQRCSGNYQHIRHCYDIHNCFLKGTWSQWSSWGLCTPPCGPNPTRVRQRLCTPLLPKFSPTVSMVEGQGEKNVTFWGTPRPQCEALQGQKLMVEEKRPCLHVPVCKDPEEEKP", "length": 465 }, "evidence": [ { "id": "A0A5G2QHH9", "url": "https://omabrowser.org/oma/group/A0A5G2QHH9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8M1NF67-1", "protein_name": "Uncharacterized protein LOC100149189 precursor", "gene_name": "si:ch73-237c6.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNPNLLWILLLGIYVQQSASQMVQCFSAFSISTGKCADLLGETEKDFCCINPSYGFAEADGVCRSCGHAAWSEWSSWSQCSVSCTEGVTQRRRFCYGNGSCSDPEDLGTIQTKPCVKKDCCPEDGGWSKWGNWQPCSVTCENGQKKRQRACSNPAPKCGGSCSGEPQEIEPCSADTVCPTHGGWSTWGNWGRCPVTCIEEGRNTQKEVRTRTCTNPSPSTAPPGRFCEGSEKDTRPCSGLPFCPIDGSWGSWSGSSACSVTCGVGRQMQSRICDSPSPKHGGKPCHGVEQKSSLCSTLAKCPIHGRWTEWSEWSICKSQSTRKITCRTREGTRRKLRDCVGTEHEGKLCDGEIVEHGSCFDIDKCDMEAILSEWSEWSYCKPDCGQDSKQTRSRKCVPDISEYQSDDYSLFYGKPVINCEKVKDETETRPCKNVPQC", "length": 437 }, "evidence": [ { "id": "A0A5G2QHH9", "url": "https://omabrowser.org/oma/group/A0A5G2QHH9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P11680-1", "protein_name": "Properdin", "gene_name": "Cfp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPAEMQAPQWLLLLLVILPATGSDPVLCFTQYEESSGRCKGLLGRDIRVEDCCLNAAYAFQEHDGGLCQACRSPQWSAWSLWGPCSVTCSEGSQLRHRRCVGRGGQCSENVAPGTLEWQLQACEDQPCCPEMGGWSEWGPWGPCSVTCSKGTQIRQRVCDNPAPKCGGHCPGEAQQSQACDTQKTCPTHGAWASWGPWSPCSGSCLGGAQEPKETRSRSCSAPAPSHQPPGKPCSGPAYEHKACSGLPPCPVAGGWGPWSPLSPCSVTCGLGQTLEQRTCDHPAPRHGGPFCAGDATRNQMCNKAVPCPVNGEWEAWGKWSDCSRLRMSINCEGTPGQQSRSRSCGGRKFNGKPCAGKLQDIRHCYNIHNCIMKGSWSQWSTWSLCTPPCSPNATRVRQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGTPRPLCEALQGQKLVVEEKRSCLHVPVCKDPEEKKP", "length": 464 }, "evidence": [ { "id": "A0A5G2QHH9", "url": "https://omabrowser.org/oma/group/A0A5G2QHH9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P27918-1", "protein_name": "Properdin", "gene_name": "CFP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MITEGAQAPRLLLPPLLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL", "length": 469 }, "evidence": [ { "id": "A0A5G2QHH9", "url": "https://omabrowser.org/oma/group/A0A5G2QHH9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" }, { "name": "cytoplasmic side of Golgi membrane", "id": "GO:0098548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098548", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" }, { "name": "complement activation, alternative pathway", "id": "GO:0006957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006957", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" }, { "name": "positive regulation of complement activation, alternative pathway", "id": "GO:0045958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045958", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHH9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 463, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHH9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHH9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 427, "end_pos": 429 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHK1-1", "uniprot_ac": "A0A5G2QHK1", "uniprot_id": "A0A5G2QHK1_PIG", "mass": { "chemical_mass": 111829.0, "monoisotopic_mass": 111829.0 }, "refseq": {}, "gene_names": [ { "name": "RSC1A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QHK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ] } ], "protein_names": [ { "name": "Regulator of solute carriers 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QHK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RSC1A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1", "locus": { "chromosome": "6", "start_pos": 74855423, "end_pos": 74809350, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003461", "url": "https://www.ensembl.org/id/ENSSSCG00000003461" } ] } } ], "crossref": [ { "id": "A0A5G2QHK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003461", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003461", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01796", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01796", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05479", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05479", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "396699", "url": "https://www.ncbi.nlm.nih.gov/gene/396699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SPEHQIT", "url": "https://omabrowser.org/oma/group/SPEHQIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15397", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15397", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15397:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15397:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09668", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09668", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUV8", "url": "https://www.uniprot.org/uniprotkb/F1SUV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVILRQKENADPRPSVQFPNLPRIDFRSIAVPGTSNSRQRQAQGVQQSHSSPGEIASSPQGLDNPALLRDMLLANPHELSLLKERNPPLADALLSGDLEKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTFLPEGELPECARLAYGAGREEVRPEEIADQELAEALQKSVEDAEKGGKETTSLGMSSLPTSDGFNHQAHPSGQRPEIGSPPSLAHSVSASVCPFKPSDPDSIEPKAVKAVKALKASAEFQITFERKEQLPLQDPSDCASSADNAPANQTPAIPLQNSLEEAIVADNLEKSAEGSTQGLKSHLHTRQEASLSVTTTRMQEPQRLIGEKGWHPEYQDPSQVNGLQQHEEPRNEQHEVVQQNAPHDPEHLCNTGDLELLGERQQNQPKSVGLETAVRGDRPQQDVDLPGTEKNILPYGCFGCSSSETFMEVDTVEQSLVAVLNSAGGQNTSVRNISASDLTVDNPLMEVETSKCNPSSEFLSNPTSTQNLQLPESSVEMSGTNKEYGNHPSSLSLCGTCQPSVESAEESCSSITAALKELHELLVISSKPALENTSEEVTCRSEIVTEGQTDVKDLSERWTQSEHLTAAQNEQCSQVSFHQATSVSVKTEELTDTSTDAGTEDVENITSSGPGDGLLVDKENVPRSRESVNESSLVTLDSAKTSNQPHCTLGVEISPGLLADEKGALNQTSEQTESLSSSFILVKDLGQGTQNPVTNRPETRENVCPEAAGLRQEFEPPTSHPSSSPSFLAPLIFPAADIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 1028, "header": "tr|A0A5G2QHK1-1|A0A5G2QHK1_PIG Isoform 1 of Regulator of solute carriers 1 OS=Sus scrofa OX=9823 GN=RSC1A1 PE=1 SV=1 CANONICAL=A0A5G2QHK1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1/entry", "sequence": { "sequence": "MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVILRQKENADPRPSVQFPNLPRIDFRSIAVPGTSNSRQRQAQGVQQSHSSPGEIASSPQGLDNPALLRDMLLANPHELSLLKERNPPLADALLSGDLEKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTFLPEGELPECARLAYGAGREEVRPEEIADQELAEALQKSVEDAEKGGKETTSLGMSSLPTSDGFNHQAHPSGQRPEIGSPPSLAHSVSASVCPFKPSDPDSIEPKAVKAVKALKASAEFQITFERKEQLPLQDPSDCASSADNAPANQTPAIPLQNSLEEAIVADNLEKSAEGSTQGLKSHLHTRQEASLSVTTTRMQEPQRLIGEKGWHPEYQDPSQVNGLQQHEEPRNEQHEVVQQNAPHDPEHLCNTGDLELLGERQQNQPKSVGLETAVRGDRPQQDVDLPGTEKNILPYGCFGCSSSETFMEVDTVEQSLVAVLNSAGGQNTSVRNISASDLTVDNPLMEVETSKCNPSSEFLSNPTSTQNLQLPESSVEMSGTNKEYGNHPSSLSLCGTCQPSVESAEESCSSITAALKELHELLVISSKPALENTSEEVTCRSEIVTEGQTDVKDLSERWTQSEHLTAAQNEQCSQVSFHQATSVSVKTEELTDTSTDAGTEDVENITSSGPGDGLLVDKENVPRSRESVNESSLVTLDSAKTSNQPHCTLGVEISPGLLADEKGALNQTSEQTESLSSSFILVKDLGQGTQNPVTNRPETRENVCPEAAGLRQEFEPPTSHPSSSPSFLAPLIFPAADIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 1028, "header": "tr|A0A5G2QHK1-1|A0A5G2QHK1_PIG Isoform 1 of Regulator of solute carriers 1 OS=Sus scrofa OX=9823 GN=RSC1A1 PE=1 SV=1 CANONICAL=A0A5G2QHK1-1" }, "locus": { "chromosome": "6", "start_pos": 74849085, "end_pos": 74809586, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087169.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087169.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063844.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063844.1" } ] } }, { "isoform_ac": "A0A5G2QK11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK11/entry", "sequence": { "sequence": "MQSVRSHDACSVCVLQLEWAPDQASDTDHLSYRRTICCFHKKGGKETTSLGMSSLPTSDGFNHQAHPSGQRPEIGSPPSLAHSVSASVCPFKPSDPDSIEPKAVKAVKALKASAEFQITFERKEQLPLQDPSDCASSADNAPANQTPAIPLQNSLEEAIVADNLEKSAEGSTQGLKSHLHTRQEASLSVTTTRMQEPQRLIGEKGWHPEYQDPSQVNGLQQHEEPRNEQHEVVQQNAPHDPEHLCNTGDLELLGERQQNQPKSVGLETAVRGDRPQQDVDLPGTEKNILPYGCFGCSSSETFMEVDTVEQSLVAVLNSAGGQNTSVRNISASDLTVDNPLMEVETSKCNPSSEFLSNPTSTQNLQLPESSVEMSGTNKEYGNHPSSLSLCGTCQPSVESAEESCSSITAALKELHELLVISSKPALENTSEEVTCRSEIVTEGQTDVKDLSERWTQSEHLTAAQNEQCSQVSFHQATSVSVKTEELTDTSTDAGTEDVENITSSGPGDGLLVDKENVPRSRESVNESSLVTLDSAKTSNQPHCTLGVEISPGLLADEKGALNQTSEQTESLSSSFILVKDLGQGTQNPVTNRPETRENVCPEAAGLRQEFEPPTSHPSSSPSFLAPLIFPAADIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 674, "header": "tr|A0A5G2QK11-1|A0A5G2QK11_PIG Computationally mapped isoform of Regulator of solute carriers 1 OS=Sus scrofa OX=9823 GN=RSC1A1 PE=4 SV=1 CANONICAL=A0A5G2QHK1-1" }, "locus": { "chromosome": "6", "start_pos": 74849085, "end_pos": 74840659, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070670.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070670.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064313.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064313.2" } ] } }, { "isoform_ac": "A0A5G2QSS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS8/entry", "sequence": { "sequence": "MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGDVVILRQKENADPRPSVQFPKKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQTTFLPEGELPECARLAYGAGREEVRPEEIADQELAEALQKSVEDAEKGGKETTSLGMSSLPTSDGFNHQAHPSGQRPEIGSPPSLAHSVSASVCPFKPSDPDSIEPKAVKAVKALKASAEFQITFERKEQLPLQDPSDCASSADNAPANQTPAIPLQNSLEEAIVADNLEKSAEGSTQGLKSHLHTRQEASLSVTTTRMQEPQRLIGEKGWHPEYQDPSQVNGLQQHEEPRNEQHEVVQQNAPHDPEHLCNTGDLELLGERQQNQPKSVGLETAVRGDRPQQDVDLPGTEKNILPYGCFGCSSSETFMEVDTVEQSLVAVLNSAGGQNTSVRNISASDLTVDNPLMEVETSKCNPSSEFLSNPTSTQNLQLPESSVEMSGTNKEYGNHPSSLSLCGTCQPSVESAEESCSSITAALKELHELLVISSKPALENTSEEVTCRSEIVTEGQTDVKDLSERWTQSEHLTAAQNEQCSQVSFHQATSVSVKTEELTDTSTDAGTEDVENITSSGPGDGLLVDKENVPRSRESVNESSLVTLDSAKTSNQPHCTLGVEISPGLLADEKGALNQTSEQTESLSSSFILVKDLGQGTQNPVTNRPETRENVCPEAAGLRQEFEPPTSHPSSSPSFLAPLIFPAADIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 949, "header": "tr|A0A5G2QSS8-1|A0A5G2QSS8_PIG Computationally mapped isoform of Regulator of solute carriers 1 OS=Sus scrofa OX=9823 GN=RSC1A1 PE=1 SV=1 CANONICAL=A0A5G2QHK1-1" }, "locus": { "chromosome": "6", "start_pos": 74849085, "end_pos": 74809586, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082945.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082945.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067985.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067985.1" } ] } }, { "isoform_ac": "F1SUV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUV8/entry", "sequence": { "sequence": "MSSLPTSDGFNHQAHPSGQRPEIGSPPSLAHSVSASVCPFKPSDPDSIEPKAVKAVKALKASAEFQITFERKEQLPLQDPSDCASSADNAPANQTPAIPLQNSLEEAIVADNLEKSAEGSTQGLKSHLHTRQEASLSVTTTRMQEPQRLIGEKGWHPEYQDPSQVNGLQQHEEPRNEQHEVVQQNAPHDPEHLCNTGDLELLGERQQNQPKSVGLETAVRGDRPQQDVDLPGTEKNILPYGCFGCSSSETFMEVDTVEQSLVAVLNSAGGQNTSVRNISASDLTVDNPLMEVETSKCNPSSEFLSNPTSTQNLQLPESSVEMSGTNKEYGNHPSSLSLCGTCQPSVESAEESCSSITAALKELHELLVISSKPALENTSEEVTCRSEIVTEGQTDVKDLSERWTQSEHLTAAQNEQCSQVSFHQATSVSVKTEELTDTSTDAGTEDVENITSSGPGDGLLVDKENVPRSRESVNESSLVTLDSAKTSNQPHCTLGVEISPGLLADEKGALNQTSEQTESLSSSFILVKDLGQGTQNPVTNRPETRENVCPEAAGLRQEFEPPTSHPSSSPSFLAPLIFPAADIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 623, "header": "tr|F1SUV8-1|F1SUV8_PIG Computationally mapped isoform of Regulator of solute carriers 1 OS=Sus scrofa OX=9823 GN=RSC1A1 PE=4 SV=1 CANONICAL=A0A5G2QHK1-1" }, "locus": { "chromosome": "6", "start_pos": 74849085, "end_pos": 74847217, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061903.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061903.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053537.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053537.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q92681-1", "protein_name": "Regulatory solute carrier protein family 1 member 1", "gene_name": "RSC1A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSLPTSDGFNHPARSSGQSPDVGNPMSLARSVSASVCPIKPSDSDRIEPKAVKALKASAEFQLNSEKKEHLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVAGNLEKSAERSTQGLKFHLHTRQEASLSVTSTRMHEPQMFLGEKDWHPENQNLSQVSDPQQHEEPGNEQYEVAQQKASHDQEYLCNIGDLELPEERQQNQHKIVDLEATMKGNGLPQNVDPPSAKKSIPSSECSGCSNSETFMEIDTAQQSLVTLLNSTGRQNANVKNIGALDLTLDNPLMEVETSKCNPSSEILNDSISTQDLQPPETNVEIPGTNKEYGHYSSPSLCGSCQPSVESAEESCPSITAALKELHELLVVSSKPASENTSEEVICQSETIAEGQTSIKDLSERWTQNEHLTQNEQCPQVSFHQAISVSVETEKLTGTSSDTGREAVENVNFRSLGDGLSTDKEGVPKSRESINKNRSVTVTSAKTSNQLHCTLGVEISPKLLAGEEDALNQTSEQTKSLSSNFILVKDLGQGIQNSVTDRPETRENVCPDASRPLLEYEPPTSHPSSSPAILPPLIFPATDIDRILRAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 617 }, "evidence": [ { "id": "A0A5G2QHK1", "url": "https://omabrowser.org/oma/group/A0A5G2QHK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ER99-1", "protein_name": "Regulatory solute carrier protein family 1 member 1", "gene_name": "Rsc1a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLPTSDGFDHPAPSGQSPEVGSPTSLARSVSASVCAIKPGDPNSIESLAMEATKASAEFQTNSKKTDPPPLQVLPDLASSAEQSLAMPFHKSSKEAVVAGNLEKSVEKGTQGLRVYLHTRQDASLTLTTTGMREPQIFAEEKSWHPENQTPSPVNGLQQHRETGSVQREAGQQSVPQDQGCLCDAEDLELHEEVVSLEALRKGELQRHAHLPSAEKGLPASGLCSCPCSEALMEVDTAEQSLVAMCSSTGRQDAVIKSPSVAHLASDNPTMEVETLQSNPSCEPVEHSILTRELQLPEDNVDMSTMDNKDDNSSSLLSGHGQPSVESAEEFCSSVTVALKELHELLVISCKPASEESPEHVTCQSEIGAESQPSVSDLSGRRVQSVHLTPSDQYSQGSCHQATSESGKTEIVGTAPCAAVEDEASTSFEGLGDGLSPDREDVRRSTESARKSCSVAITSAKLSEQLPCTSGVEIAPELAASEGAHSQPSEHVHNPGPDRPETSSVCPGAGLPRSGLDQPPTQSLSTPSVLPPFIFPAADVDRILGAGFTLQEALGALHRVGGNADLALLVLLAKNIVVPT", "length": 582 }, "evidence": [ { "id": "A0A5G2QHK1", "url": "https://omabrowser.org/oma/group/A0A5G2QHK1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" }, { "name": "regulation of DNA stability", "id": "GO:0097752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097752", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" }, { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" }, { "name": "cellular response to hydroxyurea", "id": "GO:0072711", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072711", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 677, "end_pos": 679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 682, "end_pos": 684, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 854, "end_pos": 856, "annotation": "n_glycosylation_sequon" }, { "start_pos": 879, "end_pos": 881, "annotation": "n_glycosylation_sequon" }, { "start_pos": 916, "end_pos": 918, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHK1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1028, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHK1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" }, { "id": "PS50030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBA", "eco_id": "ECO_0000259", "start_pos": 988, "end_pos": 1022, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK1" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 81, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 498, "end_pos": 500 }, { "start_pos": 677, "end_pos": 679 }, { "start_pos": 682, "end_pos": 684 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 854, "end_pos": 856 }, { "start_pos": 879, "end_pos": 881 }, { "start_pos": 916, "end_pos": 918 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHK5-1", "uniprot_ac": "A0A5G2QHK5", "uniprot_id": "A0A5G2QHK5_PIG", "mass": { "chemical_mass": 12689.0, "monoisotopic_mass": 12689.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHK5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051348", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051348", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFAEAPQAASVEEKGQKPFASGDYTTTKANVNKPFPTAAPDESEVTGGHTPLPQPRPAPVASQPAGGLKELDCTDLLIPMKSPKSVTSLLFLSFHALSHGFVGSGPCRVLLSLTVHGGEGTY", "length": 122, "header": "tr|A0A5G2QHK5-1|A0A5G2QHK5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHK5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5/entry", "sequence": { "sequence": "MFAEAPQAASVEEKGQKPFASGDYTTTKANVNKPFPTAAPDESEVTGGHTPLPQPRPAPVASQPAGGLKELDCTDLLIPMKSPKSVTSLLFLSFHALSHGFVGSGPCRVLLSLTVHGGEGTY", "length": 122, "header": "tr|A0A5G2QHK5-1|A0A5G2QHK5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHK5-1" }, "locus": { "chromosome": "12", "start_pos": 61501528, "end_pos": 61501040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085405.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085405.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063849.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063849.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHK5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHK5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHK7-1", "uniprot_ac": "A0A5G2QHK7", "uniprot_id": "A0A5G2QHK7_PIG", "mass": { "chemical_mass": 54827.0, "monoisotopic_mass": 54827.0 }, "refseq": {}, "gene_names": [ { "name": "REELD1", "type": "recommended", "evidence": [ { "id": "A0A5G2QHK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7" } ] } ], "protein_names": [ { "name": "Reeler domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QHK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "REELD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7", "locus": { "chromosome": "8", "start_pos": 82380149, "end_pos": 82398579, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041625", "url": "https://www.ensembl.org/id/ENSSSCG00000041625" } ] } } ], "crossref": [ { "id": "A0A5G2QHK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08544", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08544", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45828", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45828", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45828:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45828:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVPAAPAGWACAALCLASWSSAFSHGASSVACVDMQPKHTPAQPQNPRTHHITILTGSSSYSPGDTVPVAVRSRRDFLGFLLQARRVSDHQIVGTFVFTPPHSKLMTCSEEADTVTHSDKSRKRNLWFEWRAPAQPAGDIRFLLSVVQSYFLYWARIESSVVSQQTHNGARSDGHVELGWPMPIPGQRPKGMEGTAPAPGLSITLPLQSADVSAVASRGAAEEDSLGPVPASVGVTALPGGAETPFQPWSHTAAAVSNGLQPSRDSSPTLEPSLDVRGLEGLVALREFSESFASSPNTHHRTQNDPRFESLETCLPWDRDEQDKDKASNTTVVRPSLYNIHLTHPGPWSSEALMGSGARAAKPTSVFHTSVTSRPPTARGRAEASRPSASFSPPSEHKEPRVGKGNGEAGVGPPRKTNPGLELGQDEARTPPGILLRAPQLGILLCLSAALGMAMAVGLRYVHAQYCRKRTGVSFREPTREAVARGDDRETVHERRIRDNSFLVKSDL", "length": 509, "header": "tr|A0A5G2QHK7-1|A0A5G2QHK7_PIG Isoform 1 of Reeler domain containing 1 OS=Sus scrofa OX=9823 GN=REELD1 PE=4 SV=1 CANONICAL=A0A5G2QHK7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7/entry", "sequence": { "sequence": "MRVPAAPAGWACAALCLASWSSAFSHGASSVACVDMQPKHTPAQPQNPRTHHITILTGSSSYSPGDTVPVAVRSRRDFLGFLLQARRVSDHQIVGTFVFTPPHSKLMTCSEEADTVTHSDKSRKRNLWFEWRAPAQPAGDIRFLLSVVQSYFLYWARIESSVVSQQTHNGARSDGHVELGWPMPIPGQRPKGMEGTAPAPGLSITLPLQSADVSAVASRGAAEEDSLGPVPASVGVTALPGGAETPFQPWSHTAAAVSNGLQPSRDSSPTLEPSLDVRGLEGLVALREFSESFASSPNTHHRTQNDPRFESLETCLPWDRDEQDKDKASNTTVVRPSLYNIHLTHPGPWSSEALMGSGARAAKPTSVFHTSVTSRPPTARGRAEASRPSASFSPPSEHKEPRVGKGNGEAGVGPPRKTNPGLELGQDEARTPPGILLRAPQLGILLCLSAALGMAMAVGLRYVHAQYCRKRTGVSFREPTREAVARGDDRETVHERRIRDNSFLVKSDL", "length": 509, "header": "tr|A0A5G2QHK7-1|A0A5G2QHK7_PIG Isoform 1 of Reeler domain containing 1 OS=Sus scrofa OX=9823 GN=REELD1 PE=4 SV=1 CANONICAL=A0A5G2QHK7-1" }, "locus": { "chromosome": "8", "start_pos": 82395373, "end_pos": 82380152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087591.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087591.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064259.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064259.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 509, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHK7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHK7" }, { "id": "PS51019", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51019" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reelin", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 179, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 330, "end_pos": 332 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHP6-1", "uniprot_ac": "A0A5G2QHP6", "uniprot_id": "A0A5G2QHP6_PIG", "mass": { "chemical_mass": 22678.0, "monoisotopic_mass": 22678.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047196", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047196", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVHVSFSRKVLSGYMLKSGTLGSYGSSMYRFRRYLHTVLLHSGCTSLHSHQQCRRVPFFPHPLQHLLFVDLLMMAILTGVRWYLVVVLICFPLIIGDVEHFFVYLLAICTSSLGKCLFRSFAHFPIGLLAFFLLSCIICLYILEMKPLSTASFESIFSHSVSCLFVFFLVCFVVQRLVSLIRSHWFIFAFISVALGD", "length": 198, "header": "tr|A0A5G2QHP6-1|A0A5G2QHP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6/entry", "sequence": { "sequence": "MQVHVSFSRKVLSGYMLKSGTLGSYGSSMYRFRRYLHTVLLHSGCTSLHSHQQCRRVPFFPHPLQHLLFVDLLMMAILTGVRWYLVVVLICFPLIIGDVEHFFVYLLAICTSSLGKCLFRSFAHFPIGLLAFFLLSCIICLYILEMKPLSTASFESIFSHSVSCLFVFFLVCFVVQRLVSLIRSHWFIFAFISVALGD", "length": 198, "header": "tr|A0A5G2QHP6-1|A0A5G2QHP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHP6-1" }, "locus": { "chromosome": "15", "start_pos": 54504280, "end_pos": 54503687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073260.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073260.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061513.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061513.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 198, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHP6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHP8-1", "uniprot_ac": "A0A5G2QHP8", "uniprot_id": "A0A5G2QHP8_PIG", "mass": { "chemical_mass": 10912.0, "monoisotopic_mass": 10912.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHP8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048762", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048762", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILYPATLLNLLISSRSFGVESLGFSMYSIMSSAYSDSLISSLPIWMPLISFVCLIAVARTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QHP8-1|A0A5G2QHP8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHP8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8/entry", "sequence": { "sequence": "MLILYPATLLNLLISSRSFGVESLGFSMYSIMSSAYSDSLISSLPIWMPLISFVCLIAVARTSKTMLKSSGESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QHP8-1|A0A5G2QHP8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHP8-1" }, "locus": { "chromosome": "1", "start_pos": 134422792, "end_pos": 134422490, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066697.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066697.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063401.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063401.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHP8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHP8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHP8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHR3-1", "uniprot_ac": "A0A5G2QHR3", "uniprot_id": "A0A5G2QHR3_PIG", "mass": { "chemical_mass": 16862.0, "monoisotopic_mass": 16862.0 }, "refseq": {}, "gene_names": [ { "name": "ERICH2", "type": "recommended", "evidence": [ { "id": "A0A5G2QHR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3" } ] } ], "protein_names": [ { "name": "Glutamate rich 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QHR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ERICH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHR3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035909", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035909", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21520", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21520", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21520:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21520:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QHR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METVKETGEMSKNVVIAEQEKKNEYCLEDTDDKLSDSTDDDTNDEDNEEDSNPSKGIHAPLELMTEFLRAEMGQDYHLAKKLCQMILIYEPENPEAKEFLSLIEEMLLMEKAQNLEEDDEESEEDSSSESEGENSEDSSGESSDDCEDG", "length": 149, "header": "tr|A0A5G2QHR3-1|A0A5G2QHR3_PIG Isoform 1 of Glutamate rich 2 OS=Sus scrofa OX=9823 GN=ERICH2 PE=4 SV=1 CANONICAL=A0A5G2QHR3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3/entry", "sequence": { "sequence": "METVKETGEMSKNVVIAEQEKKNEYCLEDTDDKLSDSTDDDTNDEDNEEDSNPSKGIHAPLELMTEFLRAEMGQDYHLAKKLCQMILIYEPENPEAKEFLSLIEEMLLMEKAQNLEEDDEESEEDSSSESEGENSEDSSGESSDDCEDG", "length": 149, "header": "tr|A0A5G2QHR3-1|A0A5G2QHR3_PIG Isoform 1 of Glutamate rich 2 OS=Sus scrofa OX=9823 GN=ERICH2 PE=4 SV=1 CANONICAL=A0A5G2QHR3-1" }, "locus": { "chromosome": "15", "start_pos": 76972521, "end_pos": 76958873, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071148.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071148.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063924.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 149, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHR3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHR4-1", "uniprot_ac": "A0A5G2QHR4", "uniprot_id": "A0A5G2QHR4_PIG", "mass": { "chemical_mass": 52918.0, "monoisotopic_mass": 52918.0 }, "refseq": {}, "gene_names": [ { "name": "CORO6", "type": "recommended", "evidence": [ { "id": "A0A5G2QHR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ] } ], "protein_names": [ { "name": "Coronin", "type": "recommended", "evidence": [ { "id": "A0A5G2QHR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CORO6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4", "locus": { "chromosome": "12", "start_pos": 45806004, "end_pos": 45814574, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017792", "url": "https://www.ensembl.org/id/ENSSSCG00000017792" } ] } } ], "crossref": [ { "id": "A0A5G2QHR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10856", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10856", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10856:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10856:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08953", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08953", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16300", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16300", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN75", "url": "https://www.uniprot.org/uniprotkb/F1RN75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN75-1", "url": "https://www.uniprot.org/uniprotkb/F1RN75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9X0", "url": "https://www.uniprot.org/uniprotkb/I3L9X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9X0-1", "url": "https://www.uniprot.org/uniprotkb/I3L9X0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAERFAAHEGMRPMRAVFTRQGQIFTTGFTRMSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPPGPRRSQSASDTPLSQQHTLETLLEEIKALREQVQAQERRITALENMLCELVDGTD", "length": 471, "header": "tr|A0A5G2QHR4-1|A0A5G2QHR4_PIG Isoform 1 of Coronin OS=Sus scrofa OX=9823 GN=CORO6 PE=3 SV=2 CANONICAL=A0A5G2QHR4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4/entry", "sequence": { "sequence": "MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAERFAAHEGMRPMRAVFTRQGQIFTTGFTRMSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPPGPRRSQSASDTPLSQQHTLETLLEEIKALREQVQAQERRITALENMLCELVDGTD", "length": 471, "header": "tr|A0A5G2QHR4-1|A0A5G2QHR4_PIG Isoform 1 of Coronin OS=Sus scrofa OX=9823 GN=CORO6 PE=3 SV=2 CANONICAL=A0A5G2QHR4-1" }, "locus": { "chromosome": "12", "start_pos": 45812586, "end_pos": 45806987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089287.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089287.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063421.2" } ] } }, { "isoform_ac": "F1RN75-1", "url": "https://www.uniprot.org/uniprotkb/F1RN75/entry", "sequence": { "sequence": "MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVANNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPPGPRRSQSASDTPLSQQHTLETLLEEIKALREQVQAQERRITALENMLCELVDGTD", "length": 431, "header": "tr|F1RN75-1|F1RN75_PIG Computationally mapped isoform of Coronin OS=Sus scrofa OX=9823 GN=CORO6 PE=3 SV=4 CANONICAL=A0A5G2QHR4-1" }, "locus": { "chromosome": "12", "start_pos": 45812586, "end_pos": 45806987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019364.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019364.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018850.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018850.4" } ] } }, { "isoform_ac": "I3L9X0-1", "url": "https://www.uniprot.org/uniprotkb/I3L9X0/entry", "sequence": { "sequence": "MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAERARPHEGARPLRAVFTTDGKLLSTGFSRMSERQLALWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPPGPRRSQSASDTPLSQHTLETLLEEIKALREQVQAQERRITALENMLCELVDGTD", "length": 470, "header": "tr|I3L9X0-1|I3L9X0_PIG Computationally mapped isoform of Coronin OS=Sus scrofa OX=9823 GN=CORO6 PE=3 SV=3 CANONICAL=A0A5G2QHR4-1" }, "locus": { "chromosome": "12", "start_pos": 45812586, "end_pos": 45806987, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024471.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024471.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020834.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020834.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 471, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHR4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHR4" }, { "id": "SM01166", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01166" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1899", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 68, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 186, "end_pos": 188 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHT9-1", "uniprot_ac": "A0A5G2QHT9", "uniprot_id": "A0A5G2QHT9_PIG", "mass": { "chemical_mass": 83729.0, "monoisotopic_mass": 83729.0 }, "refseq": {}, "gene_names": [ { "name": "NOX5", "type": "recommended", "evidence": [ { "id": "A0A5G2QHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ] } ], "protein_names": [ { "name": "NADPH oxidase 5", "type": "synonym", "evidence": [ { "id": "A0A5G2QHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9", "locus": { "chromosome": "1", "start_pos": 166907522, "end_pos": 166868087, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004966", "url": "https://www.ensembl.org/id/ENSSSCG00000004966" } ] } } ], "crossref": [ { "id": "A0A5G2QHT9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHT9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004966", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004966", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06186", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06186", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11972:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11972:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3299685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVPGDAGLPPEGCRGIMSAEEDAKWLQWVTHQFETIAGEDGEINLQEFKRALNVKESFFAERFFALFDLDGSGTITLQELQEALTLLIHGSPTDKLKFLFQVYDIDGNGCIDVDELRTVLQSCLHESAISLPQEKLDQLTLVLFEAADKDCSGTITFDELRDELQCFPGVMENLTISAVHWLMPPAAQPGRHRPRLLTSAYWHNHRSHLLCLATYVGLHVLLFALAASAHRAFGTSIMVAKGCGQCLNFDCSFIVVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVAVGLSLVHTVAHVVNFALQAQSEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLVQFACSSSCVRRSGHFEVFYWTHLSYLPMWLLLILHGPNFWKWLLIPGTLFFIEKTIGLAVSRMEAQCIVEVNLLPSKVTHLLIKRPPLFHYRPGDYLYLNIPSIAHYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRLYESFKKSDPMGDGCKSLSRSLKMRRSQRKAQVSEVSSENHQFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFASILQSILYRHQKRKHVCPSCQHSWLESIQVDDMKLHKVDFIWINRDQRSFEWFVSLLTKLEMDQAKEPQEGRFLELHMYMTSALGKNDMKAIGLQMALDLLAKKEKKDSITGLQTRTQPGRPDWNKVFQKVAAEKKGKVQVFFCGSPALAKVLKGHCEQFSFKFFQENF", "length": 737, "header": "tr|A0A5G2QHT9-1|A0A5G2QHT9_PIG Isoform 1 of NADPH oxidase 5 OS=Sus scrofa OX=9823 GN=NOX5 PE=4 SV=1 CANONICAL=A0A5G2QHT9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9/entry", "sequence": { "sequence": "MSVPGDAGLPPEGCRGIMSAEEDAKWLQWVTHQFETIAGEDGEINLQEFKRALNVKESFFAERFFALFDLDGSGTITLQELQEALTLLIHGSPTDKLKFLFQVYDIDGNGCIDVDELRTVLQSCLHESAISLPQEKLDQLTLVLFEAADKDCSGTITFDELRDELQCFPGVMENLTISAVHWLMPPAAQPGRHRPRLLTSAYWHNHRSHLLCLATYVGLHVLLFALAASAHRAFGTSIMVAKGCGQCLNFDCSFIVVLMLRRCLTWLRATWLAQVLPLDQNIQFHQLMGYVAVGLSLVHTVAHVVNFALQAQSEASPFQFWELLLTTRPGIGWVHGSASPTGVALLLLLLVQFACSSSCVRRSGHFEVFYWTHLSYLPMWLLLILHGPNFWKWLLIPGTLFFIEKTIGLAVSRMEAQCIVEVNLLPSKVTHLLIKRPPLFHYRPGDYLYLNIPSIAHYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRLYESFKKSDPMGDGCKSLSRSLKMRRSQRKAQVSEVSSENHQFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFASILQSILYRHQKRKHVCPSCQHSWLESIQVDDMKLHKVDFIWINRDQRSFEWFVSLLTKLEMDQAKEPQEGRFLELHMYMTSALGKNDMKAIGLQMALDLLAKKEKKDSITGLQTRTQPGRPDWNKVFQKVAAEKKGKVQVFFCGSPALAKVLKGHCEQFSFKFFQENF", "length": 737, "header": "tr|A0A5G2QHT9-1|A0A5G2QHT9_PIG Isoform 1 of NADPH oxidase 5 OS=Sus scrofa OX=9823 GN=NOX5 PE=4 SV=1 CANONICAL=A0A5G2QHT9-1" }, "locus": { "chromosome": "1", "start_pos": 166902033, "end_pos": 166868127, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079965.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079965.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063451.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063451.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3299685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "resource": "Reactome", "description": "Detoxification of Reactive Oxygen Species" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "NADPH oxidase complex", "id": "GO:0043020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "endothelial cell proliferation", "id": "GO:0001935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001935", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "superoxide anion generation", "id": "GO:0042554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042554", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "proton channel activity", "id": "GO:0015252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "superoxide-generating NAD(P)H oxidase activity", "id": "GO:0016175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016175", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" }, { "name": "superoxide-generating NADPH oxidase activity", "id": "GO:0106292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106292", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHT9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 737, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHT9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHT9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 91, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHT9" }, { "id": "PS51384", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51384" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD-binding FR-type", "eco_id": "ECO_0000259", "start_pos": 412, "end_pos": 548, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 174, "end_pos": 176 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHU5-1", "uniprot_ac": "A0A5G2QHU5", "uniprot_id": "A0A5G2QHU5_PIG", "mass": { "chemical_mass": 166391.0, "monoisotopic_mass": 166391.0 }, "refseq": { "ac": "XP_020938495", "name": "EH domain-binding protein 1-like protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938495" }, "gene_names": [ { "name": "EHBP1L1", "type": "recommended", "evidence": [ { "id": "A0A5G2QHU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ] }, { "name": "EHBP1L1", "type": "synonym", "evidence": [ { "id": "XP_020938495", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938495" } ] } ], "protein_names": [ { "name": "EH domain binding protein 1 like 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QHU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5/entry#names_and_taxonomy" } ] }, { "name": "EH domain-binding protein 1-like protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020938495", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938495" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EHBP1L1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5", "locus": { "chromosome": "2", "start_pos": 6662463, "end_pos": 6678888, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012988", "url": "https://www.ensembl.org/id/ENSSSCG00000012988" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012988", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012988", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21255", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21255", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518056", "url": "https://www.ncbi.nlm.nih.gov/gene/100518056", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938495", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938495", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ84", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRI6", "url": "https://www.uniprot.org/uniprotkb/F1RRI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRI6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVVECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFVIENESKGQRKVLATAEVDLARHAGPVPAQVPLRLRLKPKSVKVVQAELSLTLSGVLLREGRATDDDMQSLASLMSMKPSDVGNLDDFAESDEEEANGPGAPEARARVSQPDTSRELKTLCEEEEEGRVQPQQAAASPSSVEDTSLAPVSAPAPPARSPRGQGSEAATVAGGQVGPKAPRPPGTPPEMRSSRHPGQDVAPTPAPRLRKGSDVPWPPVHQGEKEAPKASGTPSAGVDSAVETQAWASPQEGTEAQGAELGPGIEDRDSSNSLEGQKPKAEEGGLGDMPETSGVDTEHESGVREVSSPRSEVRAGKGEESVEIGLVAAEQKSKVRHVDTKGAEATGVTSEARFKATPEAPPRGSQGRTAVRTRDEAPQVLGPPPAEPAGPSRHLDDLKGASAAARQEREGAEVWGRAPGVGGTGLEEGPSAGAASAGPQVSRCQEAPPVADQGAMSRGLRVWEVETGDSRVLGTETGVEESELLGTQETEVGGSGFPEAETETAQVEILGAQESEAADVAESEELGNQRTEAGGSGVLETKTWMSETELLGPQEKSGGSGGLKIEAETVESDILGAQGTEVRGSRVPEIEARGAEAEVLGTQEKELGHSGISEIKSEVRGTQETEVGGSEVLGFETDTAGTETLGTQETEIGGSGVPGMEAEAAEGETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIGPEILGLQEMVTGGSEAPGIEAEAAEAEALGPWKMVAEGSGVPGIEAETLGPQEMVAGGSGAPGIEAEAEGAQETEVGDSGFSGPGLGMAEAEGLGTQQTETAVLEAEKAKARTSGVQEAESGLWGTLKYEGLRVPVIKHKVLGSQRAEAETTFLRGQEAEGGFWGVSEAMPEVWGAKEAEREVPGVSENQSGIFEAQEAEAGVSGTEKGKEAEGNLPEASLIEVQVASGAGAGVPSPSGASSPEEPEEDRRLPGSQAPPAQVSFSQSLLEWCQEVTAGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDFASLDPLNVKQNNKQAFDGFAALGVSRLLEPADMVLLAVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGAGTYRVASAQPSPPDELDAGDLAQRLREHRTEAPQELQEAATRADRAAPEAASKDRGAEAAQEARSAEAPADGPGARASEPPAEGLVNGVGAPGAAGGVRLRRSSVNAEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSSSFSVDETDSGAAGAAGAAGAAAEGVSPDPSPAPGPAPATAPQQPPGGTPAAEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVETQLRSLMESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEDWLKTAAQQHREQLLLEELVSLVNQRDELVRNLDQKERIALEEDERLERGLEQRRRKLSRQLSRRERCVLS", "length": 1580, "header": "tr|A0A5G2QHU5-1|A0A5G2QHU5_PIG Isoform 1 of EH domain binding protein 1 like 1 OS=Sus scrofa OX=9823 GN=EHBP1L1 PE=1 SV=1 CANONICAL=A0A5G2QHU5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5/entry", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVVECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFVIENESKGQRKVLATAEVDLARHAGPVPAQVPLRLRLKPKSVKVVQAELSLTLSGVLLREGRATDDDMQSLASLMSMKPSDVGNLDDFAESDEEEANGPGAPEARARVSQPDTSRELKTLCEEEEEGRVQPQQAAASPSSVEDTSLAPVSAPAPPARSPRGQGSEAATVAGGQVGPKAPRPPGTPPEMRSSRHPGQDVAPTPAPRLRKGSDVPWPPVHQGEKEAPKASGTPSAGVDSAVETQAWASPQEGTEAQGAELGPGIEDRDSSNSLEGQKPKAEEGGLGDMPETSGVDTEHESGVREVSSPRSEVRAGKGEESVEIGLVAAEQKSKVRHVDTKGAEATGVTSEARFKATPEAPPRGSQGRTAVRTRDEAPQVLGPPPAEPAGPSRHLDDLKGASAAARQEREGAEVWGRAPGVGGTGLEEGPSAGAASAGPQVSRCQEAPPVADQGAMSRGLRVWEVETGDSRVLGTETGVEESELLGTQETEVGGSGFPEAETETAQVEILGAQESEAADVAESEELGNQRTEAGGSGVLETKTWMSETELLGPQEKSGGSGGLKIEAETVESDILGAQGTEVRGSRVPEIEARGAEAEVLGTQEKELGHSGISEIKSEVRGTQETEVGGSEVLGFETDTAGTETLGTQETEIGGSGVPGMEAEAAEGETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIGPEILGLQEMVTGGSEAPGIEAEAAEAEALGPWKMVAEGSGVPGIEAETLGPQEMVAGGSGAPGIEAEAEGAQETEVGDSGFSGPGLGMAEAEGLGTQQTETAVLEAEKAKARTSGVQEAESGLWGTLKYEGLRVPVIKHKVLGSQRAEAETTFLRGQEAEGGFWGVSEAMPEVWGAKEAEREVPGVSENQSGIFEAQEAEAGVSGTEKGKEAEGNLPEASLIEVQVASGAGAGVPSPSGASSPEEPEEDRRLPGSQAPPAQVSFSQSLLEWCQEVTAGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDFASLDPLNVKQNNKQAFDGFAALGVSRLLEPADMVLLAVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGAGTYRVASAQPSPPDELDAGDLAQRLREHRTEAPQELQEAATRADRAAPEAASKDRGAEAAQEARSAEAPADGPGARASEPPAEGLVNGVGAPGAAGGVRLRRSSVNAEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSSSFSVDETDSGAAGAAGAAGAAAEGVSPDPSPAPGPAPATAPQQPPGGTPAAEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVETQLRSLMESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEDWLKTAAQQHREQLLLEELVSLVNQRDELVRNLDQKERIALEEDERLERGLEQRRRKLSRQLSRRERCVLS", "length": 1580, "header": "tr|A0A5G2QHU5-1|A0A5G2QHU5_PIG Isoform 1 of EH domain binding protein 1 like 1 OS=Sus scrofa OX=9823 GN=EHBP1L1 PE=1 SV=1 CANONICAL=A0A5G2QHU5-1" }, "locus": { "chromosome": "2", "start_pos": 6678689, "end_pos": 6663107, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074897.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074897.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064359.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064359.1" } ] } }, { "isoform_ac": "A0A8W4FJ84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ84/entry", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVVEYCSSVSLQPSQWTFVIENESKGQRKVLATAEVDLARHAGPVPAQVPLRLRLKPKSVKVVQAELSLTLSGVLLREGRATDDDMQSLASLMSMKPSDVGNLDDFAESDEEEANGPGAPEARARVSQPDTSRELKTLCEEEEEGRVQPQQAAASPSSVEDTSLAPVSAPAPPARSPRGQGSEAATVAGGQVGPKAPRPPGTPPEMRSSRHPGQDVAPTPAPRLRKGSDVPWPPVHQGEKEAPKASGTPSAGVDSAVETQAWASPQEGTEAQGAELGPGIEDRDSSNSLEGQKPKAEEGGLGDMPETSGVDTEHESGVREVSSPRSEVRAGKGEESVEIGLVAAEQKSKVRHVDTKGAEATGVTSEARFKATPEAPPRGSQGRTAVRTRDEAPQVLGPPPAEPAGPSRHLDDLKGASAAARQEREGAEVWGRAPGVGGTGLEEGPSAGAASAGPQVSRCQEAPPVADQGAMSRGLRVWEVETGDSRVLGTETGVEESELLGTQETEVGGSGFPEAETETAQVEILGAQESEAADVAESEELGNQRTEAGGSGVLETKTWMSETELLGPQEKSGGSGGLKIEAETVESDILGAQGTEVRGSRVPEIEARGAEAEVLGTQEKELGHSGISEIKSEVRGTQETEVGGSEVLGFETDTAGTETLGTQETEIGGSGVPGMEAEAAEGETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIGPEILGLQEMVTGGSEAPGIEAEAAEAEALGPWKMVAEGSGVPGIEAETLGPQEMVAGGSGAPGIEAEAEGAQETEVGDSGFSGPGLGMAEAEGLGTQQTETAVLEAEKAKARTSGVQEAESGLWGTLKYEGLRVPVIKHKVLGSQRAEAETTFLRGQEAEGGFWGVSEAMPEVWGAKEAEREVPGVSENQSGIFEAQEAEAGVSGTEKGKEAEGNLPEASLIEVQVASGAGAGVPSPSGASSPEEPEEDRRLPGSQAPPAQVSFSQSLLEWCQEVTAGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDFASLDPLNVKQNNKQAFDGFAALGVSRLLEPADMVLLAVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGAGTYRVASAQPSPPDELDAGDLAQRLREHRTEAPQELQEAATRADRAAPEAASKDRGAEAAQEARSAEAPADGPGARASEPPAEGLVNGVGAPGAAGGVRLRRSSVNAEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSSSFSVDETDSGAAGAAGAAGAAAEGVSPDPSPAPGPAPATAPQQPPDGAWAEPTLSSAPPPSTQQRFQDTSQYVCAELQALEQEQRQIDGRAAEVETQLRSLMESGANRLQEEVLIQEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFELLSRELRAMLAIEDWLKTAAQQHREQLLLEELVSLVNQRDELVRNLDQKERIALEEDERLERGLEQRRRKLSRQLSRRERCVLS", "length": 1523, "header": "tr|A0A8W4FJ84-1|A0A8W4FJ84_PIG Computationally mapped isoform of EH domain binding protein 1 like 1 OS=Sus scrofa OX=9823 GN=EHBP1L1 PE=1 SV=1 CANONICAL=A0A5G2QHU5-1" }, "locus": { "chromosome": "2", "start_pos": 6678689, "end_pos": 6663107, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093714.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093714.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079290.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079290.1" } ] } }, { "isoform_ac": "F1RRI6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI6/entry", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVVECTKKCMRPEWTFVIENESKGQRKVLATAEVDLARHAGPVPAQVPLRLRLKPKSVKVVQAELSLTLSGVLLREGRATDDDMQSLASLMSMKPSDVGNLDDFAESDEEEANGPGAPEARARVSQPDTSRELKTLCEEEEEGRVQPQQAAASPSSVEDTSLAPVSAPAPPARSPRGQGSEAATVAGGQVGPKAPRPPGTPPEMRSSRHPGQDVAPTPAPRLRKGSDVPWPPVHQGEKEAPKASGTPSAGVDSAVETQAWASPQEGTEAQGAELGPGIEDRDSSNSLEGQKPKAEEGGLGDMPETSGVDTEHESGVREVSSPRSEVRAGKGEESVEIGLVAAEQKSKVRHVDTKGAEATGVTSEARFKATPEAPPRGSQGRTAVRTRDEAPQVLGPPPAEPAGPSRHLDDLKGASAAARQEREGAEVWGRAPGVGGTGLEEGPSAGAASAGPQVSRCQEAPPVADQGAMSRGLRVWEVETGDSRVLGTETGVEESELLGTQETEVGGSGFPEAETETAQVEILGAQESEAADVAESEELGNQRTEAGGSGVLETKTWMSETELLGPQEKSGGSGGLKIEAETVESDILGAQGTEVRGSRVPEIEARGAEAEVLGTQEKELGHSGISEIKSEVRGTQETEVGGSEVLGFETDTAGTETLGTQETEIGGSGVPGMEAEAAEGETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIEAETLGPQEMVAGGSGAPGIGPEILGLQEMVTGGSEAPGIEAEAAEAEALGPWKMVAEGSGVPGIEAETLGPQEMVAGGSGAPGIEAEAEGAQETEVGDSGFSGPGLGMAEAEGLGTQQTETAVLEAEKAKARTSGVQEAESGLWGTLKYEGLRVPVIKHKVLGSQRAEAETTFLRGQEAEGGFWGVSEAMPEVWGAKEAEREVPGVSENQSGIFEAQEAEAGVSGTEKGKEAEGNLPEASLIEVQVASGAGAGVPSPSGASSPEEPEEDRRLPGSQAPPAQVSFSQSLLEWCQEVTAGYRGVRITNFTTSWRNGLAFCAILHRFYPDKIDFASLDPLNVKQNNKQAFDGFAALGVSRLLEPADMVLLAVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGAGTYRVASAQPSPPDELDAGDLAQRLREHRTEAPQELQEAATRADRAAPEAASKDRGAEAAQEARSAEAPADGPGARASEPPAEGLVNGVGAPGAAGGVRLRRSSVNAEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSSSFSVDETDSGAAGAAGAAGAAAVSALRCVGVRGAGGAGAGPQASPPPPTPAPGLVSVSVLLLRGAGVPRPTSTRDRTCANAMTQSRCSDSAAGSLLNLLRHRRFF", "length": 1393, "header": "tr|F1RRI6-1|F1RRI6_PIG Computationally mapped isoform of EH domain binding protein 1 like 1 OS=Sus scrofa OX=9823 GN=EHBP1L1 PE=1 SV=5 CANONICAL=A0A5G2QHU5-1" }, "locus": { "chromosome": "2", "start_pos": 6678689, "end_pos": 6669285, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014198.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014198.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013812.5", "url": "https://www.ensembl.org/id/ENSSSCP00000013812.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1394, "start_aa": "Thr", "end_pos": 1394, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1394", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 330, "start_aa": "Thr", "end_pos": 330, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr330", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" }, { "name": "endocytic recycling", "id": "GO:0032456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032456", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1012, "end_pos": 1014, "annotation": "n_glycosylation_sequon" }, { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1109, "end_pos": 1111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1344, "end_pos": 1346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" }, { "id": "PS51848", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BMERB", "eco_id": "ECO_0000259", "start_pos": 1406, "end_pos": 1558, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 157, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QHU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU5" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 1085, "end_pos": 1190, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 301, 330, 1394 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1012, "end_pos": 1014 }, { "start_pos": 104, "end_pos": 106 }, { "start_pos": 1109, "end_pos": 1111 }, { "start_pos": 1344, "end_pos": 1346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHU6-1", "uniprot_ac": "A0A5G2QHU6", "uniprot_id": "A0A5G2QHU6_PIG", "mass": { "chemical_mass": 14812.0, "monoisotopic_mass": 14812.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050505", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050505", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKGIASIISLCDLSLLAYRNAIDFCVLILYPATLPNSWMSSNSFLVESLGFSRYSIMSSANSDSFTSSFPIWIPFISFTSLIAVARTSRTMLMSSGESGHPCLVPDLSGNSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QHU6-1|A0A5G2QHU6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHU6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6/entry", "sequence": { "sequence": "MVKGIASIISLCDLSLLAYRNAIDFCVLILYPATLPNSWMSSNSFLVESLGFSRYSIMSSANSDSFTSSFPIWIPFISFTSLIAVARTSRTMLMSSGESGHPCLVPDLSGNSFSFSPLRMMFAVGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QHU6-1|A0A5G2QHU6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHU6-1" }, "locus": { "chromosome": "13", "start_pos": 58956778, "end_pos": 58956374, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086704.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086704.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061563.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061563.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHU6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHU8-1", "uniprot_ac": "A0A5G2QHU8", "uniprot_id": "A0A5G2QHU8_PIG", "mass": { "chemical_mass": 148792.0, "monoisotopic_mass": 148792.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QHU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QHU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHU8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHU8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050448", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050448", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QHU8-1|A0A5G2QHU8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHU8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QHU8-1|A0A5G2QHU8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHU8-1" }, "locus": { "chromosome": "7", "start_pos": 6817208, "end_pos": 6813393, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078271.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078271.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063964.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHU8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHU8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHU8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHU8" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHV5-1", "uniprot_ac": "A0A5G2QHV5", "uniprot_id": "A0A5G2QHV5_PIG", "mass": { "chemical_mass": 8783.0, "monoisotopic_mass": 8783.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHV5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050585", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050585", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLMSESVLPMFSSRSLTVSCRIFKSFSHLEFIFVHGVRLCSSFIALHAAVQVSQQCLLNRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A5G2QHV5-1|A0A5G2QHV5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHV5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5/entry", "sequence": { "sequence": "MMLMSESVLPMFSSRSLTVSCRIFKSFSHLEFIFVHGVRLCSSFIALHAAVQVSQQCLLNRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A5G2QHV5-1|A0A5G2QHV5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHV5-1" }, "locus": { "chromosome": "6", "start_pos": 116121567, "end_pos": 116121337, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080187.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080187.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061573.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061573.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHV5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 77, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHV5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHV5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHX3-1", "uniprot_ac": "A0A5G2QHX3", "uniprot_id": "A0A5G2QHX3_PIG", "mass": { "chemical_mass": 17659.0, "monoisotopic_mass": 17659.0 }, "refseq": {}, "gene_names": [ { "name": "SLC10A3", "type": "recommended", "evidence": [ { "id": "A0A5G2QHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ] } ], "protein_names": [ { "name": "Ubiquitin-like protein 4A", "type": "recommended", "evidence": [ { "id": "A0A5G2QHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC10A3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3", "locus": { "chromosome": "X", "start_pos": 125010131, "end_pos": 125011928, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025766", "url": "https://www.ensembl.org/id/ENSSSCG00000025766" } ] } } ], "crossref": [ { "id": "A0A5G2QHX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025766", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025766", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01807", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01807", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46555:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46555:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A2J4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLTVKALQGRECSLQVSEDELVSTLKHLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSVGPNSKLNLVVKPLEKVLLEESAARRLAEAPPPQAWQLVSKVLGRHFSAADASRVLDQLQRDYERSLSRLTLDDIERLASRFLHPEVTEAMEKGFSK", "length": 157, "header": "tr|A0A5G2QHX3-1|A0A5G2QHX3_PIG Isoform 1 of Ubiquitin-like protein 4A OS=Sus scrofa OX=9823 GN=SLC10A3 PE=1 SV=1 CANONICAL=A0A5G2QHX3-1" }, "isoforms": [ { "isoform_ac": "A0A287A2J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2J4/entry", "sequence": { "sequence": "MRLGRWVGGEGAEAGWLTDFRPSVPTHPLRGAGPSLLEGAAGRRAPGSPACLLPSSAGLPRAAGDEQDRAKPPAASRRRSREPTGSHASEARLRDSRRRRRHIPAARVRRRRRRRGGALWGRGGRGGGGRAPRAASGGGGRFRRAPGAAARGRGRLGCAPAGVDAAAAAMQLTVKALQGRECSLQVSEDELVSTLKHLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSVGPNSKLNLVVKPLEKVLLEESAARRLAEAPPPPPAAWQLVSKVLGRHFSAADASRVLDQLQRDYERSLSRLTLDDIERLASRFLHPEVTEAMEKGFSNVCFIPGLCLRIRRWLPTAATTSLDHSQQGAPSRPVV", "length": 364, "header": "tr|A0A287A2J4-1|A0A287A2J4_PIG Computationally mapped isoform of Ubiquitin-like protein 4A OS=Sus scrofa OX=9823 GN=SLC10A3 PE=1 SV=2 CANONICAL=A0A5G2QHX3-1" }, "locus": { "chromosome": "X", "start_pos": 125010072, "end_pos": 125007173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040003.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040003.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037970.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037970.2" } ] } }, { "isoform_ac": "A0A5G2QHX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3/entry", "sequence": { "sequence": "MQLTVKALQGRECSLQVSEDELVSTLKHLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSVGPNSKLNLVVKPLEKVLLEESAARRLAEAPPPQAWQLVSKVLGRHFSAADASRVLDQLQRDYERSLSRLTLDDIERLASRFLHPEVTEAMEKGFSK", "length": 157, "header": "tr|A0A5G2QHX3-1|A0A5G2QHX3_PIG Isoform 1 of Ubiquitin-like protein 4A OS=Sus scrofa OX=9823 GN=SLC10A3 PE=1 SV=1 CANONICAL=A0A5G2QHX3-1" }, "locus": { "chromosome": "X", "start_pos": 125009565, "end_pos": 125008661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066929.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066929.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064389.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064389.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "post-translational protein targeting to endoplasmic reticulum membrane", "id": "GO:0006620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006620", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "pmid": "" }, { "name": "tail-anchored membrane protein insertion into ER membrane", "id": "GO:0071816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071816", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "pmid": "" }, { "name": "BAT3 complex", "id": "GO:0071818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071818", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 157, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHX3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX3" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 72, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHX7-1", "uniprot_ac": "A0A5G2QHX7", "uniprot_id": "A0A5G2QHX7_PIG", "mass": { "chemical_mass": 9859.0, "monoisotopic_mass": 9859.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "KRAB domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QHX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044698", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044698", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VEANLTGIHEDGPLTLEDVAIEFSQEEWACLDPAQRALYRDVMLETCRNLLSLEEHRFPLGVGICPWVSLHFPLCASWEPLLCLAEH", "length": 87, "header": "tr|A0A5G2QHX7-1|A0A5G2QHX7_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHX7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7/entry", "sequence": { "sequence": "VEANLTGIHEDGPLTLEDVAIEFSQEEWACLDPAQRALYRDVMLETCRNLLSLEEHRFPLGVGICPWVSLHFPLCASWEPLLCLAEH", "length": 87, "header": "tr|A0A5G2QHX7-1|A0A5G2QHX7_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QHX7-1" }, "locus": { "chromosome": "6", "start_pos": 57060271, "end_pos": 57059772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084417.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084417.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063496.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063496.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHX7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 87, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHX7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHX7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHX7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 87, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHZ7-1", "uniprot_ac": "A0A5G2QHZ7", "uniprot_id": "A0A5G2QHZ7_PIG", "mass": { "chemical_mass": 33537.0, "monoisotopic_mass": 33537.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QHZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QHZ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051344", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051344", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QHZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILAGVRWYLIMVLICISLITSDAEHLFMCFLAICMSSLENCLFRSPAHFLMGLFVFLVLSCRRYLQILELNPLSVDSFAKIFSHSVGCLFVFRVSFAVQKLLSLIRSHLFIFVFTVITLRGGSEKMLLLFMLEIVWPVFSSRSFIVSGLLSRSLIHLEFIFVYGVRECSNFILFHVAVQFSQHHLLNKAVFSPLYILASFVIDELAVGAWVEFCAFSPIPLIYISVFVPILHGFDDCCSVLKSGSLIPPAPFFFWLFWAAPLFIFKILYLFEEFQIILPLLFYIPCYQC", "length": 292, "header": "tr|A0A5G2QHZ7-1|A0A5G2QHZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHZ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7/entry", "sequence": { "sequence": "MMAILAGVRWYLIMVLICISLITSDAEHLFMCFLAICMSSLENCLFRSPAHFLMGLFVFLVLSCRRYLQILELNPLSVDSFAKIFSHSVGCLFVFRVSFAVQKLLSLIRSHLFIFVFTVITLRGGSEKMLLLFMLEIVWPVFSSRSFIVSGLLSRSLIHLEFIFVYGVRECSNFILFHVAVQFSQHHLLNKAVFSPLYILASFVIDELAVGAWVEFCAFSPIPLIYISVFVPILHGFDDCCSVLKSGSLIPPAPFFFWLFWAAPLFIFKILYLFEEFQIILPLLFYIPCYQC", "length": 292, "header": "tr|A0A5G2QHZ7-1|A0A5G2QHZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QHZ7-1" }, "locus": { "chromosome": "11", "start_pos": 11448626, "end_pos": 11447751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078449.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078449.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064025.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI18-1", "uniprot_ac": "A0A5G2QI18", "uniprot_id": "A0A5G2QI18_PIG", "mass": { "chemical_mass": 125892.0, "monoisotopic_mass": 125892.0 }, "refseq": {}, "gene_names": [ { "name": "SCAF4", "type": "recommended", "evidence": [ { "id": "A0A5G2QI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ] } ], "protein_names": [ { "name": "SR-related CTD associated factor 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCAF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18", "locus": { "chromosome": "13", "start_pos": 195333260, "end_pos": 195396204, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021023", "url": "https://www.ensembl.org/id/ENSSSCG00000021023" } ] } } ], "crossref": [ { "id": "A0A5G2QI18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021023", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021023", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12461", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12461", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17005", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17005", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23140:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23140:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R464", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R464", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R464-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R464-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELPQATTNSVPTVPQLPSSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAAAATATAAATTAPPAPVAAVPAAAAAAAAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGVPEDRDGRQQQPPPPQQQQQQQQQQQQPPPQPQPQQQPPPTQQPQPTQQQSQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDERENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRESRREKEENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGGAESAVVKPEELPAEATSSVEPEKDSGSAAEAPR", "length": 1148, "header": "tr|A0A5G2QI18-1|A0A5G2QI18_PIG Isoform 1 of SR-related CTD associated factor 4 OS=Sus scrofa OX=9823 GN=SCAF4 PE=1 SV=2 CANONICAL=A0A5G2QI18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELPQATTNSVPTVPQLPSSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAAAATATAAATTAPPAPVAAVPAAAAAAAAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGVPEDRDGRQQQPPPPQQQQQQQQQQQQPPPQPQPQQQPPPTQQPQPTQQQSQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDERENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRESRREKEENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGGAESAVVKPEELPAEATSSVEPEKDSGSAAEAPR", "length": 1148, "header": "tr|A0A5G2QI18-1|A0A5G2QI18_PIG Isoform 1 of SR-related CTD associated factor 4 OS=Sus scrofa OX=9823 GN=SCAF4 PE=1 SV=2 CANONICAL=A0A5G2QI18-1" }, "locus": { "chromosome": "13", "start_pos": 195395793, "end_pos": 195338024, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067926.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067926.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063541.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063541.2" } ] } }, { "isoform_ac": "A0A5G2R464-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R464/entry", "sequence": { "sequence": "SYSNFLFSLMDMKPPISRAKMILITKAAIKAIKVRCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELPQATTNSVPTVPQLPSSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAAAATATAAATTAPPTPAAPPAPVAAVPAAAAAAAAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGVPEDRDGRQQQPPPPQQQQQQQQQQQQPPPQPQPQQQPPPTQQPQPTQQQSQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDERENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRESRREKEENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGGAESAVVKPEELPAEATSSVEPEKDSGSAAEAPR", "length": 1114, "header": "tr|A0A5G2R464-1|A0A5G2R464_PIG Computationally mapped isoform of SR-related CTD associated factor 4 OS=Sus scrofa OX=9823 GN=SCAF4 PE=1 SV=1 CANONICAL=A0A5G2QI18-1" }, "locus": { "chromosome": "13", "start_pos": 195375118, "end_pos": 195338024, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070259.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070259.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071123.1" } ] } }, { "isoform_ac": "A0A5G2RJB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJB4/entry", "sequence": { "sequence": "MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELPQATTNSVPTVPQLPSSDAFAAVAQLFQSTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDTAAAATATAAATTAPPAPVAAVPAAAAAAAAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGVPEDRDGRQQQPPPPQQQQQQQQQQQQPPPQPQPQQQPPPTQQPQPTQQQSQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDERENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRESRREKEENRGKEKPEVTDRAGGNKTVEPPISQVGNVDTVSELDKGGAESAVVKPEELPAEATSSVEPEKDSGSAAEAPR", "length": 1126, "header": "tr|A0A5G2RJB4-1|A0A5G2RJB4_PIG Computationally mapped isoform of SR-related CTD associated factor 4 OS=Sus scrofa OX=9823 GN=SCAF4 PE=1 SV=1 CANONICAL=A0A5G2QI18-1" }, "locus": { "chromosome": "13", "start_pos": 195395793, "end_pos": 195338024, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076417.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076417.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071904.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 375, "start_aa": "Thr", "end_pos": 375, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr375", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 389, "start_aa": "Thr", "end_pos": 389, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr389", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 749, "start_aa": "Thr", "end_pos": 749, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr749", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 974, "start_aa": "Thr", "end_pos": 974, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr974", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 980, "start_aa": "Thr", "end_pos": 980, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr980", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" }, { "name": "RNA polymerase II C-terminal domain phosphoserine binding", "id": "GO:1990269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990269", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" }, { "name": "negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled", "id": "GO:2000805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000805", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1092, "end_pos": 1094, "annotation": "n_glycosylation_sequon" }, { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 766, "end_pos": 768, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1148, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI18" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" }, { "id": "PS51391", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51391" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CID", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 139, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QI18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI18" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 509, "end_pos": 583, "start_aa": "Thr", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 375, 389, 749, 974, 980 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1092, "end_pos": 1094 }, { "start_pos": 147, "end_pos": 149 }, { "start_pos": 766, "end_pos": 768 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI29-1", "uniprot_ac": "A0A5G2QI29", "uniprot_id": "A0A5G2QI29_PIG", "mass": { "chemical_mass": 56362.0, "monoisotopic_mass": 56362.0 }, "refseq": {}, "gene_names": [ { "name": "KRT4", "type": "recommended", "evidence": [ { "id": "A0A5G2QI29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ] } ], "protein_names": [ { "name": "Keratin 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QI29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29", "locus": { "chromosome": "5", "start_pos": 18091743, "end_pos": 18099178, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024610", "url": "https://www.ensembl.org/id/ENSSSCG00000024610" } ] } } ], "crossref": [ { "id": "A0A5G2QI29", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI29", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024610", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024610", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZPQ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R348", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R348", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R348-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R348-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQN8", "url": "https://www.uniprot.org/uniprotkb/I3LQN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQN8-1", "url": "https://www.uniprot.org/uniprotkb/I3LQN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIARQQCVRGRPQGFSCGSAIVGGGKKSAFSSISLSGGAGRCSSGGFGSRSLYNLGGKKSISISVAGARQGAGFGAAGCFGAGGFGGGLGGSFGGWGGAGSLVCPAGGIQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKVLETKWNLLQQQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSLKNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAALKKAKEELARMLREYQELMSVKLALDIEIATYRKLLEGEECRMSGECQSAVSISVVGGAASAGGIGSGGVGSCSGFGLGAGFGSGSGSGFGFGSGVCGSAGSKIISTTTTSTLTKRSQR", "length": 526, "header": "tr|A0A5G2QI29-1|A0A5G2QI29_PIG Isoform 1 of Keratin 4 OS=Sus scrofa OX=9823 GN=KRT4 PE=1 SV=2 CANONICAL=A0A5G2QI29-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPQ6/entry", "sequence": { "sequence": "MIARQQCVRGRPQGFSCGSAIVGGGKKSAFSSISLSGGAGRCSSGGFGSRSLYNLGGKKSISISVAGARQGAGFGAAGCFGAGGFGTGFGAGGFGGGLGGSFGGWGGAGSLVCPAGGIQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKVLETKWNLLQQQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSLKNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAALKKAKEELARMLREYQELMSVKLALDIEIATYRGWQGGQAPLGPAWRCLGVSASFTPLPTPFLGLISPVSPQCRGMDSAFLEFGRIFLIWAW", "length": 508, "header": "tr|A0A286ZPQ6-1|A0A286ZPQ6_PIG Computationally mapped isoform of Keratin 4 OS=Sus scrofa OX=9823 GN=KRT4 PE=1 SV=3 CANONICAL=A0A5G2QI29-1" }, "locus": { "chromosome": "5", "start_pos": 18098980, "end_pos": 18092044, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038083.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038083.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033586.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033586.3" } ] } }, { "isoform_ac": "A0A5G2QI29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29/entry", "sequence": { "sequence": "MIARQQCVRGRPQGFSCGSAIVGGGKKSAFSSISLSGGAGRCSSGGFGSRSLYNLGGKKSISISVAGARQGAGFGAAGCFGAGGFGGGLGGSFGGWGGAGSLVCPAGGIQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKVLETKWNLLQQQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSLKNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAALKKAKEELARMLREYQELMSVKLALDIEIATYRKLLEGEECRMSGECQSAVSISVVGGAASAGGIGSGGVGSCSGFGLGAGFGSGSGSGFGFGSGVCGSAGSKIISTTTTSTLTKRSQR", "length": 526, "header": "tr|A0A5G2QI29-1|A0A5G2QI29_PIG Isoform 1 of Keratin 4 OS=Sus scrofa OX=9823 GN=KRT4 PE=1 SV=2 CANONICAL=A0A5G2QI29-1" }, "locus": { "chromosome": "5", "start_pos": 18098980, "end_pos": 18092225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070434.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070434.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064450.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064450.2" } ] } }, { "isoform_ac": "A0A5G2R348-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R348/entry", "sequence": { "sequence": "MIARQQCVRGRPQGFSCGSAIVGGGKKSAFSSISLSGGAGRCSSGGFGSRSLYNLGGKKSISISVAGARQGAGFGAAGCFGAGGFGTGFGAGGFGGGLGGSFGGWGGAGSLVCPAGGIQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKWNLLQQQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSLKNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAALKKAKEELARMLREYQELMSVKLALDIEIATYRKGDDVPAAPLGPAWRCLGVSASFTPLPTPFLGLISPVSPQCRGMDSAFLEFGRIFLIWAW", "length": 495, "header": "tr|A0A5G2R348-1|A0A5G2R348_PIG Computationally mapped isoform of Keratin 4 OS=Sus scrofa OX=9823 GN=KRT4 PE=1 SV=2 CANONICAL=A0A5G2QI29-1" }, "locus": { "chromosome": "5", "start_pos": 18098980, "end_pos": 18092044, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076811.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076811.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071520.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071520.2" } ] } }, { "isoform_ac": "I3LQN8-1", "url": "https://www.uniprot.org/uniprotkb/I3LQN8/entry", "sequence": { "sequence": "MIARQQCVRGRPQGFSCGSAIVGGGKKSAFSSISLSGGAGRCSSGGFGSRSLYNLGGKKSISISVAGARQGAGFGAAGCFGAGGFGTGFGAGGFGGGLGGSFGGWGGAGSLVCPAGGIQQVTINQSLLTPLHVEIDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKQKTTTSSKNLDPFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLKKDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLDSIIAEVRAQYEEITQRSKAEAEALYQIKIQQLQISVDQHGDSLKNTKNEISELNRMIQRLRAEIENIKKQCQTLQGSVADAEQRGEAALKDAYSKRAELEAALKKAKEELARMLREYQELMSVKLALDIEIATYRKLLEGEECRMSGECQSAVSISVVGGAASAGGIGSGGVGSCSGFGLGAGFGSGSGSGFGFGSGVCGSAGSKIISTTTTSTLTKRSQR", "length": 524, "header": "tr|I3LQN8-1|I3LQN8_PIG Computationally mapped isoform of Keratin 4 OS=Sus scrofa OX=9823 GN=KRT4 PE=1 SV=4 CANONICAL=A0A5G2QI29-1" }, "locus": { "chromosome": "5", "start_pos": 18098980, "end_pos": 18092225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031030.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031030.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026418.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026418.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" }, { "name": "negative regulation of epithelial cell proliferation", "id": "GO:0050680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050680", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 526, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI29" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QI29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI29" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 450, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI37-1", "uniprot_ac": "A0A5G2QI37", "uniprot_id": "A0A5G2QI37_PIG", "mass": { "chemical_mass": 20800.0, "monoisotopic_mass": 20800.0 }, "refseq": { "ac": "XP_020931356", "name": "cbp/p300-interacting transactivator 4-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931356" }, "gene_names": [ { "name": "LOC102167213", "type": "recommended", "evidence": [ { "id": "A0A5G2QI37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ] }, { "name": "LOC102167213", "type": "synonym", "evidence": [ { "id": "XP_020931356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931356" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QI37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37/entry#names_and_taxonomy" } ] }, { "name": "cbp/p300-interacting transactivator 4-like", "type": "synonym", "evidence": [ { "id": "XP_020931356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931356" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102167213", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37", "locus": {} } ], "crossref": [ { "id": "A0A5G2QI37", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI37", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032174", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032174", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102167213", "url": "https://www.ncbi.nlm.nih.gov/gene/102167213", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102167213", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167213", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QI37", "url": "https://www.orthodb.org/?gene=A0A5G2QI37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17045", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17045", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17045:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17045:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8866907", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866907", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931356", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931356", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADHLLLVEGNHLMPRPQLTVPAQGTHVVWMLQPHWGLGLDKWLLPRGTPLGLPLQPPRGVLMCGAFGSHRPSSPFCLCCCHHQPASSTHLQPRVTLYPSPETAHTPPLPAPWEAPLGLQPVPGGPALPPPPPTHALVCMERELIHEEALTSLELELGLHPVRELPKLFLGQSQFNCFSDFGLAPPTGSVSC", "length": 192, "header": "tr|A0A5G2QI37-1|A0A5G2QI37_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC102167213 PE=3 SV=1 CANONICAL=A0A5G2QI37-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37/entry", "sequence": { "sequence": "MADHLLLVEGNHLMPRPQLTVPAQGTHVVWMLQPHWGLGLDKWLLPRGTPLGLPLQPPRGVLMCGAFGSHRPSSPFCLCCCHHQPASSTHLQPRVTLYPSPETAHTPPLPAPWEAPLGLQPVPGGPALPPPPPTHALVCMERELIHEEALTSLELELGLHPVRELPKLFLGQSQFNCFSDFGLAPPTGSVSC", "length": 192, "header": "tr|A0A5G2QI37-1|A0A5G2QI37_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC102167213 PE=3 SV=1 CANONICAL=A0A5G2QI37-1" }, "locus": { "chromosome": "15", "start_pos": 103841, "end_pos": 103266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061668.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061668.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102167213", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167213", "resource": "KEGG Pathway" }, { "id": "R-SSC-8866907", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866907", "resource": "Reactome", "description": "Activation of the TFAP2 (AP-2) family of transcription factors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI37" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI37-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 192, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI37-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI37" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI59-1", "uniprot_ac": "A0A5G2QI59", "uniprot_id": "A0A5G2QI59_PIG", "mass": { "chemical_mass": 98764.0, "monoisotopic_mass": 98764.0 }, "refseq": {}, "gene_names": [ { "name": "SMTN", "type": "recommended", "evidence": [ { "id": "A0A5G2QI59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ] } ], "protein_names": [ { "name": "Smoothelin", "type": "synonym", "evidence": [ { "id": "A0A5G2QI59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMTN", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59", "locus": { "chromosome": "14", "start_pos": 47902698, "end_pos": 47879317, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010017", "url": "https://www.ensembl.org/id/ENSSSCG00000010017" } ] } } ], "crossref": [ { "id": "A0A5G2QI59", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010017", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010017", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21258", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21258", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21259", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21259", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KTPYPGF", "url": "https://omabrowser.org/oma/group/KTPYPGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Z1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPD7", "url": "https://www.uniprot.org/uniprotkb/F1RPD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RPD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRAQEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSPEPPPSPPRAPSPEPQEPPATLNSDRQVVNKLLHCPTEPTAAQGPTKGLSDTKRADPAGPRPCQRSLSVLSPRQPVQNREPTPLAGGPSPFQRTGSVRDRVRKFTSDSPMAAGLQEGPPRGTLGPSTPARLPGPSHTRATPASFSSSGPSSRGPSDTSSRFNKEQQGTASQLQSCPREDGPGGRGLAARPLENRAGGPVARSEEPSAPLPVAVGTAEPGASMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITHISSPGTVARLGTVTHVTSFSHASPGSQGGCSLKMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARARPGEDRGNTATKTTMRHSQQTADGSAVSTVTKTERLVHSNDGTRTARTTVESSFVRRSENGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAEKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKS", "length": 910, "header": "tr|A0A5G2QI59-1|A0A5G2QI59_PIG Isoform 1 of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=1 CANONICAL=A0A5G2QI59-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59/entry", "sequence": { "sequence": "MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRAQEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSPEPPPSPPRAPSPEPQEPPATLNSDRQVVNKLLHCPTEPTAAQGPTKGLSDTKRADPAGPRPCQRSLSVLSPRQPVQNREPTPLAGGPSPFQRTGSVRDRVRKFTSDSPMAAGLQEGPPRGTLGPSTPARLPGPSHTRATPASFSSSGPSSRGPSDTSSRFNKEQQGTASQLQSCPREDGPGGRGLAARPLENRAGGPVARSEEPSAPLPVAVGTAEPGASMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITHISSPGTVARLGTVTHVTSFSHASPGSQGGCSLKMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARARPGEDRGNTATKTTMRHSQQTADGSAVSTVTKTERLVHSNDGTRTARTTVESSFVRRSENGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAEKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKS", "length": 910, "header": "tr|A0A5G2QI59-1|A0A5G2QI59_PIG Isoform 1 of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=1 CANONICAL=A0A5G2QI59-1" }, "locus": { "chromosome": "14", "start_pos": 47899409, "end_pos": 47881284, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081382.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081382.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061698.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061698.1" } ] } }, { "isoform_ac": "A0A5G2QQ45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ45/entry", "sequence": { "sequence": "MPGVPGPGSELAAALEERLGQALEELRAVAEAGQAAVTQAAEAAASAVEPVARAAEELRAETAALSRRLDALGRQVEVLSLRLGVPLVPDLEPELEPSELLLAAADPEALFQAAEDAGTPVAHPPAFSTRRRSSAGPARCGSLMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAEKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKS", "length": 436, "header": "tr|A0A5G2QQ45-1|A0A5G2QQ45_PIG Computationally mapped isoform of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=1 CANONICAL=A0A5G2QI59-1" }, "locus": { "chromosome": "14", "start_pos": 47899409, "end_pos": 47891923, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088256.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088256.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060408.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060408.1" } ] } }, { "isoform_ac": "A0A5G2R5C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5C2/entry", "sequence": { "sequence": "MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRAQEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSPEPPPSPPRAPSPEPQEPPATLNSDRQVVNKLLHCPTEPTAAQGPTKGLSDTKRADPAGPRPCQRSLSVLSPRQPVQNREPTPLAGGPSPFQRTGSVRDRVRKFTSDSPMAAGLQEGPPRGTLGPSTPARLPGPSHTRATPASFSSSGPSSRGPSDTSSRFNKEQQGTASQLQSCPREDGPGGRGLAARPLENRAGGPVARSEEPSAPLPVAVGTAEPGASMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITHISSPGTVARLGTVTHVTSFSHASPGSQGGCSLKMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARARPGEDRGNTATKTTMRHSQQTADGSAVSTVTKTERLVHSNDGTRTARTTVESSFVRRSENGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAEKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 912, "header": "tr|A0A5G2R5C2-1|A0A5G2R5C2_PIG Computationally mapped isoform of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=1 CANONICAL=A0A5G2QI59-1" }, "locus": { "chromosome": "14", "start_pos": 47902543, "end_pos": 47881284, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080926.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080926.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072429.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072429.1" } ] } }, { "isoform_ac": "A0A5G2R8Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Z1/entry", "sequence": { "sequence": "YSCLSLSSVDEALEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRAQEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSPEPPPSPPRAPSPEPQEPPATLNSDRQVVNKLLHCPTEPTAAQGPTKGLSDTKRADPAGPRPCQRSLSVLSPRQPVQNREPTPLAGGPSPFQRTGSVRDRVRKFTSDSPMAAGLQEGPPRGTLGPSTPARLPGPSHTRATPASFSSSGPSSRGPSDTSSRFNKEQQGTASQLQSCPREDGPGGRGLAARPLENRAGGPVARSEEPSAPLPVAVGTAEPGASMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITHISSPGTVARLGTVTHVTSFSHASPGSQGGCSLKMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARARPGEDRGNTATKTTMRHSQQTADGSAVSTVTKTERLVHSSKGPSRAQVESSFVRRSENGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAPRGERGRPMTAWGGLWWEGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKS", "length": 888, "header": "tr|A0A5G2R8Z1-1|A0A5G2R8Z1_PIG Computationally mapped isoform of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=1 CANONICAL=A0A5G2QI59-1" }, "locus": { "chromosome": "14", "start_pos": 47899409, "end_pos": 47885374, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085253.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085253.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073743.1" } ] } }, { "isoform_ac": "F1RPD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RPD7/entry", "sequence": { "sequence": "MADETLAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGRLESMSDVEELTALLRGAPEYEERKLIRAAIRRIRAQEIEAATLAGRLCSGRPNSGSREDSKGRASHRLERCEVLKPQEQEHQAEVPEPTPAPNGTSRDVTTVTLLLRAPLGSTPSSPASPESSPSTTSPEPPLESAKAQGPAAEALGSPEPPPSPPRAPSPEPQEPPATLNSDRQVVNKLLHCPTEPTAAQGPTKGLSDTKRADPAGPRPCQRSLSVLSPRQPVQNREPTPLAGGPSPFQRTGSVRDRVRKFTSDSPMAAGLQEGPPRGTLGPSTPARLPGPSHTRATPASFSSSGPSSRGPSDTSSRFNKEQQGTASQLQSCPREDGPGGRGLAARPLENRAGGPVARSEEPSAPLPVAVGTAEPGASMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITHISSPGTVARLGTVTHVTSFSHASPGSQGGCSLKMEPEPAEPPSAAVEETNGAEQTRVDKAPERRSPLRAEELMAIEDEGVLDKMLDQTTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARARPGEDRGNTATKTTMRHSQQTADGSAVSTVTKTERLVHSNDGTRTARTTVESSFVRRSENGGGSTMMQTKTFSSSSSKKMGSIFDREDEASPRPGSLAALEKRQAEKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 935, "header": "tr|F1RPD7-1|F1RPD7_PIG Computationally mapped isoform of Smoothelin OS=Sus scrofa OX=9823 GN=SMTN PE=1 SV=3 CANONICAL=A0A5G2QI59-1" }, "locus": { "chromosome": "14", "start_pos": 47902543, "end_pos": 47881284, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010974.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010974.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010688.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010688.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 174, "start_aa": "Thr", "end_pos": 174, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr174", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 198, "start_aa": "Thr", "end_pos": 198, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr198", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AH70-1", "protein_name": "Smoothelin", "gene_name": "Smtn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTTLLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSGSREDSRRQAAHTLDPGKVPEEEKQGQQTEVREPTPTPEDTSQDVTTVTLLLRAPPGGTPSSPASPDSSPTTASPEPLLEPAGAQCPAAEAPVSSEPLPHPSEAPSPEPPMSPAPPSSQGRVISKPLLGSTEPSDTVDSTRGSSNTKRADLAEPKPCQRSLSVLSPRQPTQNQEPTPLAGSSQFRRAGSVRDRVRKFTSDSPVVARLQDGPPRTALASPTPTRLPGPSLMSTTLASSSSSSNSSSPSPSDTSSHKKQRELAHSLAQLQSCPQEEGPGGRSLAPRSLENRAGGPRPCSEEPSTPPPVAVGTGEPGGSMKTTFTIEIKDGRGQASTGRVVLPTGNQRAELTLGLRAPPTLLSTSSGGKNTITHVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPSATVEAANGTEQTLDKVNKGPEGRSPLSAEELMAIEDEGILDKMLDQATNFEERKLIRAALRELRQRKRDQRDKERERRLREARARPGESRSNMATTETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSSSTTVQTKTFSSSSSSSKKMGSIFDREDQTSSRSGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSSGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 923 }, "evidence": [ { "id": "A0A5G2QI59", "url": "https://omabrowser.org/oma/group/A0A5G2QI59/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P53814-1", "protein_name": "Smoothelin", "gene_name": "SMTN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQRAALARLAGQLESMNDVEELTALLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLYSGRPNSGSREDSKGLAAHRLEQCEVPEREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQRSLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDGTPQAALSPLTPARLLGPSLTSTTPASSSSGSSSRGPSDTSSRFSKEQRGVAQPLAQLRSCPQEEGPRGRGLAARPLENRAGGPVARSEEPGAPLPVAVGTAEPGGSMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKSTITRVNSPGTLARLGSVTHVTSFSHAPPSSRGGCSIKMEAEPAEPLAAAVEAANGAEQTRVNKAPEGRSPLSAEELMTIEDEGVLDKMLDQSTDFEERKLIRAALRELRQRKRDQRDKERERRLQEARGRPGEGRGNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTRTARTTTVESSFVRRSENGSGSTMMQTKTFSSSSSSKKMGSIFDREDQASPRAGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAEMLVDCVPLVEVDDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 917 }, "evidence": [ { "id": "A0A5G2QI59", "url": "https://omabrowser.org/oma/group/A0A5G2QI59/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q921U8-1", "protein_name": "Smoothelin", "gene_name": "Smtn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTTLLRSAGEYEERKLIRAAIRRVRAQEIKAATLAGRLCSRLPSSGPREDSRRQAAHTLDPGKVPEPEQQEQQTEVLEPTPTPEDTSQDVTTVTLLLRAPPGGRPSSPASPHNSPTSASPEPLLEPAGAQCPAVEAPVSSEPLPHPSEAPSPEPPMSPVPSSSRGRVISKPLPGPTEPSDTLDSIRGFSNTKRADPSETKSCQRSLSVLSPRQPTPNREPTSLAGPSQFRRVGSVRDRVQKFTSDSPVVARLQDGPPRTALASPTPTRLPGPSLISTTPASSSSSNSSSPSPSDTSSHKKQRELAHSLAELQSCPQEEGPGGRGLALRSLENRAGGPKPCSEEPSTPPPVAVGTGEPGGSMKTTFTIEIKDGRGQASTGRVLLPTGNQRAELTLGLRAPPTLLSTSSGGKNTITHISNPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPSTTVEAANGAEQARVDKGPEGRSPLSAEELTAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDKERERRLREARARPGESRSNVATETTTRHSQRAADGSTVGTVTKTERLVHSNDGTQTARTTTVESSFMRRLENGSSSSSTTTTTVQTKSFSSSSSSSSSKKMGSIFDREDQTSSRPGSLAALERRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGGPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 923 }, "evidence": [ { "id": "A0A5G2QI59", "url": "https://omabrowser.org/oma/group/A0A5G2QI59/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 818, "end_pos": 820, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 910, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI59" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QI59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI59" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 794, "end_pos": 900, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 174, 198, 279 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 818, "end_pos": 820 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI76-1", "uniprot_ac": "A0A5G2QI76", "uniprot_id": "A0A5G2QI76_PIG", "mass": { "chemical_mass": 98790.0, "monoisotopic_mass": 98790.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QI76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76", "locus": {} } ], "crossref": [ { "id": "A0A5G2QI76", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QI76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QI76-1|A0A5G2QI76_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QI76-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QI76-1|A0A5G2QI76_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QI76-1" }, "locus": { "chromosome": "5", "start_pos": 79773752, "end_pos": 79771218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066507.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066507.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064115.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 845, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI76" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 638, "end_pos": 640 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI98-1", "uniprot_ac": "A0A5G2QI98", "uniprot_id": "A0A5G2QI98_PIG", "mass": { "chemical_mass": 22768.0, "monoisotopic_mass": 22768.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98", "locus": {} } ], "crossref": [ { "id": "A0A5G2QI98", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042965", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042965", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNNADSLRKEWGNIRRSQEKLENSFAEIQTELRSVKTRINNAEERFSDVEDEIMEITQSGQQTENQIKKQESNIRDLWDNIKWANLCITGIPEGEEKEKGIKNVFEEIITGKFPDLKVLISKYRKQRVPNKLNPNRPTARHIIIKMAKVNDKEKILKAAREKQSVTYTGTPIRLSADFSTETLQPGENGKRYLKH", "length": 196, "header": "tr|A0A5G2QI98-1|A0A5G2QI98_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QI98-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98/entry", "sequence": { "sequence": "MNNNADSLRKEWGNIRRSQEKLENSFAEIQTELRSVKTRINNAEERFSDVEDEIMEITQSGQQTENQIKKQESNIRDLWDNIKWANLCITGIPEGEEKEKGIKNVFEEIITGKFPDLKVLISKYRKQRVPNKLNPNRPTARHIIIKMAKVNDKEKILKAAREKQSVTYTGTPIRLSADFSTETLQPGENGKRYLKH", "length": 196, "header": "tr|A0A5G2QI98-1|A0A5G2QI98_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QI98-1" }, "locus": { "chromosome": "14", "start_pos": 19031613, "end_pos": 19031026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091554.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091554.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061743.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 178, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI98" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 80, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIG2-1", "uniprot_ac": "A0A5G2QIG2", "uniprot_id": "A0A5G2QIG2_PIG", "mass": { "chemical_mass": 21206.0, "monoisotopic_mass": 21206.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QIG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045290", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045290", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QIG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQTTQQQKSQSMEKWAKDLNRLFSKEDIQMANKHMKKCSTSLFIREMQIKTTMRYHLTPVRMAIINKSTNNKC", "length": 181, "header": "tr|A0A5G2QIG2-1|A0A5G2QIG2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QIG2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQTTQQQKSQSMEKWAKDLNRLFSKEDIQMANKHMKKCSTSLFIREMQIKTTMRYHLTPVRMAIINKSTNNKC", "length": 181, "header": "tr|A0A5G2QIG2-1|A0A5G2QIG2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QIG2-1" }, "locus": { "chromosome": "2", "start_pos": 65167857, "end_pos": 65167315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072000.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072000.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061809.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061809.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIG2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 181, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIG2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIG2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 174, "end_pos": 176 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIG6-1", "uniprot_ac": "A0A5G2QIG6", "uniprot_id": "A0A5G2QIG6_PIG", "mass": { "chemical_mass": 29469.0, "monoisotopic_mass": 29469.0 }, "refseq": { "ac": "XP_020942719", "name": "calsenilin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942719" }, "gene_names": [ { "name": "KCNIP3", "type": "recommended", "evidence": [ { "id": "A0A5G2QIG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ] }, { "name": "KCNIP3", "type": "synonym", "evidence": [ { "id": "XP_020942719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942719" } ] } ], "protein_names": [ { "name": "Potassium voltage-gated channel interacting protein 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QIG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6/entry#names_and_taxonomy" } ] }, { "name": "calsenilin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020942719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942719" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNIP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6", "locus": { "chromosome": "3", "start_pos": 45906673, "end_pos": 46000115, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008119", "url": "https://www.ensembl.org/id/ENSSSCG00000008119" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008119", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008119", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524248", "url": "https://www.ncbi.nlm.nih.gov/gene/100524248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524248", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TITKKEW", "url": "https://omabrowser.org/oma/group/TITKKEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SU60", "url": "https://www.orthodb.org/?gene=F1SU60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055:SF165", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055:SF165", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5576894", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576894", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942719", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU60", "url": "https://www.uniprot.org/uniprotkb/F1SU60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU60-1", "url": "https://www.uniprot.org/uniprotkb/F1SU60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRAKEVMKASDGSLLGDPRRTPLSKKEGVKWQRPRLTRQALMRCCLVKWILSSAAPQGSDSSDSELELSAVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIRFEDFVIGLSILLRGTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMSSMQLFENVI", "length": 256, "header": "tr|A0A5G2QIG6-1|A0A5G2QIG6_PIG Isoform 1 of Potassium voltage-gated channel interacting protein 3 OS=Sus scrofa OX=9823 GN=KCNIP3 PE=3 SV=2 CANONICAL=A0A5G2QIG6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6/entry", "sequence": { "sequence": "MQRAKEVMKASDGSLLGDPRRTPLSKKEGVKWQRPRLTRQALMRCCLVKWILSSAAPQGSDSSDSELELSAVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIRFEDFVIGLSILLRGTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMSSMQLFENVI", "length": 256, "header": "tr|A0A5G2QIG6-1|A0A5G2QIG6_PIG Isoform 1 of Potassium voltage-gated channel interacting protein 3 OS=Sus scrofa OX=9823 GN=KCNIP3 PE=3 SV=2 CANONICAL=A0A5G2QIG6-1" }, "locus": { "chromosome": "3", "start_pos": 45999992, "end_pos": 45908775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070035.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070035.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063691.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063691.2" } ] } }, { "isoform_ac": "F1SU60-1", "url": "https://www.uniprot.org/uniprotkb/F1SU60/entry", "sequence": { "sequence": "MGIQGMELCAMAVVVLLFIAVLKQFGILEPMSMEDSSDSELELSAVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIRFEDFVIGLSILLRGTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMSSMQLFENVI", "length": 230, "header": "tr|F1SU60-1|F1SU60_PIG Computationally mapped isoform of Potassium voltage-gated channel interacting protein 3 OS=Sus scrofa OX=9823 GN=KCNIP3 PE=3 SV=5 CANONICAL=A0A5G2QIG6-1" }, "locus": { "chromosome": "3", "start_pos": 45939496, "end_pos": 45908775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008895.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008895.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008669.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008669.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524248", "resource": "KEGG Pathway" }, { "id": "R-SSC-5576894", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576894", "resource": "Reactome", "description": "Phase 1 - inactivation of fast Na+ channels" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54LX0-1", "protein_name": "Calcium-binding protein M", "gene_name": "cbpM", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGQQNSKLTKSDIEFIGKNSNFSKEEVANIYGEFKKFDKDGNGSFDRKEFVLFFKSKLPNYPEDNLNKLFDAFDSDKSNTIDFKELTVALSIIGKGSAEDKLKVLFDIYDKDKSGILEKKEVDEMIALMKNVGVSLGKSPGDIELFIVKLFEKIDKDKNNLISREEFLTEGARSPSLLTLLGI", "length": 183 }, "evidence": [ { "id": "A0A5G2QIG6", "url": "https://omabrowser.org/oma/group/A0A5G2QIG6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2W7-1", "protein_name": "Calsenilin", "gene_name": "KCNIP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQPAKEVTKASDGSLLGDLGHTPLSKKEGIKWQRPRLSRQALMRCCLVKWILSSTAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYAQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRNQDGVVTIEEFLEACQKDENIMSSMQLFENVI", "length": 256 }, "evidence": [ { "id": "A0A5G2QIG6", "url": "https://omabrowser.org/oma/group/A0A5G2QIG6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of potassium ion transmembrane transport", "id": "GO:1901379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901379", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "potassium channel regulator activity", "id": "GO:0015459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015459", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "potassium channel activity", "id": "GO:0005267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 161, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIG9-1", "uniprot_ac": "A0A5G2QIG9", "uniprot_id": "A0A5G2QIG9_PIG", "mass": { "chemical_mass": 12824.0, "monoisotopic_mass": 12824.0 }, "refseq": {}, "gene_names": [ { "name": "PBX1", "type": "recommended", "evidence": [ { "id": "A0A5G2QIG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ] } ], "protein_names": [ { "name": "PBX homeobox 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QIG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PBX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006331", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006331", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FKHFLWP", "url": "https://omabrowser.org/oma/group/FKHFLWP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12623:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12623:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03792", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03792", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6X1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6X1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVDSVQMDRWACWDLCRYLLITLYCFAA", "length": 115, "header": "tr|A0A5G2QIG9-1|A0A5G2QIG9_PIG Isoform 1 of PBX homeobox 1 OS=Sus scrofa OX=9823 GN=PBX1 PE=1 SV=1 CANONICAL=A0A5G2QIG9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9/entry", "sequence": { "sequence": "MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVDSVQMDRWACWDLCRYLLITLYCFAA", "length": 115, "header": "tr|A0A5G2QIG9-1|A0A5G2QIG9_PIG Isoform 1 of PBX homeobox 1 OS=Sus scrofa OX=9823 GN=PBX1 PE=1 SV=1 CANONICAL=A0A5G2QIG9-1" }, "locus": { "chromosome": "4", "start_pos": 86169502, "end_pos": 85985784, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105433.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105433.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079421.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079421.1" } ] } }, { "isoform_ac": "A0A8W4F6X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6X1/entry", "sequence": { "sequence": "MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTGRNEIPTFKHFLWPVDSLNQQSLTHY", "length": 114, "header": "tr|A0A8W4F6X1-1|A0A8W4F6X1_PIG Computationally mapped isoform of PBX homeobox 1 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QIG9-1" }, "locus": { "chromosome": "4", "start_pos": 86169502, "end_pos": 86166019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105752.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105752.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075003.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075003.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIG9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIL1-1", "uniprot_ac": "A0A5G2QIL1", "uniprot_id": "A0A5G2QIL1_PIG", "mass": { "chemical_mass": 25478.0, "monoisotopic_mass": 25478.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QIL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIL1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIL1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAEQKREKRMKKNEESFRELWDNIKHTNIRIIGMPEGEKRGKGTGKIFQEIVAKNFPNMGKEPLTQIQEAQQVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKHITCKGTPIRLLADFSAETLQARREWHDILHVMKGKSLQPRFLYPARLSFRFEGEIKSFTEKQKLSEFSNTKPALQQILKELLSAEKKKPQPETKIPQMTRLTRKGIQ", "length": 217, "header": "tr|A0A5G2QIL1-1|A0A5G2QIL1_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIL1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1/entry", "sequence": { "sequence": "MDAEQKREKRMKKNEESFRELWDNIKHTNIRIIGMPEGEKRGKGTGKIFQEIVAKNFPNMGKEPLTQIQEAQQVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKHITCKGTPIRLLADFSAETLQARREWHDILHVMKGKSLQPRFLYPARLSFRFEGEIKSFTEKQKLSEFSNTKPALQQILKELLSAEKKKPQPETKIPQMTRLTRKGIQ", "length": 217, "header": "tr|A0A5G2QIL1-1|A0A5G2QIL1_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIL1-1" }, "locus": { "chromosome": "4", "start_pos": 57156961, "end_pos": 57156311, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078321.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078321.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064630.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064630.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIL1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 217, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIL1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIL1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 123, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QIL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIL1" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 190, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIM3-1", "uniprot_ac": "A0A5G2QIM3", "uniprot_id": "A0A5G2QIM3_PIG", "mass": { "chemical_mass": 9042.0, "monoisotopic_mass": 9042.0 }, "refseq": {}, "gene_names": [ { "name": "SMIM10L3", "type": "recommended", "evidence": [ { "id": "A0A5G2QIM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 10 like 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QIM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM10L3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3", "locus": { "chromosome": "3", "start_pos": 4828540, "end_pos": 4826221, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047832", "url": "https://www.ensembl.org/id/ENSSSCG00000047832" } ] } } ], "crossref": [ { "id": "A0A5G2QIM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047832", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047832", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34446:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34446:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAALSGLAVRLSRSAAARSYGVFCKGLTRTLLIFFDLAWRLRINFPYLYIVASMMLNVRLQVIVIPEPQTRRGGGRGAAGLG", "length": 83, "header": "tr|A0A5G2QIM3-1|A0A5G2QIM3_PIG Isoform 1 of Small integral membrane protein 10 like 3 OS=Sus scrofa OX=9823 GN=SMIM10L3 PE=4 SV=1 CANONICAL=A0A5G2QIM3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3/entry", "sequence": { "sequence": "MAAALSGLAVRLSRSAAARSYGVFCKGLTRTLLIFFDLAWRLRINFPYLYIVASMMLNVRLQVIVIPEPQTRRGGGRGAAGLG", "length": 83, "header": "tr|A0A5G2QIM3-1|A0A5G2QIM3_PIG Isoform 1 of Small integral membrane protein 10 like 3 OS=Sus scrofa OX=9823 GN=SMIM10L3 PE=4 SV=1 CANONICAL=A0A5G2QIM3-1" }, "locus": { "chromosome": "3", "start_pos": 4826738, "end_pos": 4826302, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088380.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088380.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063756.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063756.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIM3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 83, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIM3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIM3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIU1-1", "uniprot_ac": "A0A5G2QIU1", "uniprot_id": "A0A5G2QIU1_PIG", "mass": { "chemical_mass": 62042.0, "monoisotopic_mass": 62042.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "NTF2 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QIU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIU1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026976", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026976", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10662:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10662:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09162", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09162", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NSLPLHTDQMNPIQRRARCWGIYQRRYNYWSEQVTSQEQKDRNSVGSDAHVDTRVRYTPYGIPPYHRRGNFQMQDLTHVNMDTDKKPPEGKVERIRQDETLGSWFKITIPFGIKYEEKWLLSLIQKHCGVPFTPVEFHYEKMQAQFFVENANIAFALRNVSGKIYNEAKERISVFVDPCDAPRSVQKELRSAKVEQMKLTLNRQNEGSQQFLHIQRLRFDPGLMTSGMGTVQNPGNAMTTCLQLYGENVPKVKSAWEMDKVQWLEPDEMCADRNPVCNTSPDEATSLSSILELFPKLLCLDGQETPPATHRGAEARQCLPTCKGSFFGSNELKSLVLQFLQQYYLIHDYGDRQYLLGAYHDEACFSLTIPFNSQDPASAPANPHSGHTPTSYFPFSPRSSFYQYLEENRNMKKLKDPFLQVKLLKHTKCDIVGALCVLPQTRHDFSSFVVDTWFQTVSSWVLLLVVAVGGWSQGCVRAFTRTFITIPATSSSLCIVNDELFVREASPSERQSLHFPSQCLLPLPASCSSSPQSSSELCGLSPPSMG", "length": 546, "header": "tr|A0A5G2QIU1-1|A0A5G2QIU1_PIG Isoform 1 of NTF2 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QIU1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1/entry", "sequence": { "sequence": "NSLPLHTDQMNPIQRRARCWGIYQRRYNYWSEQVTSQEQKDRNSVGSDAHVDTRVRYTPYGIPPYHRRGNFQMQDLTHVNMDTDKKPPEGKVERIRQDETLGSWFKITIPFGIKYEEKWLLSLIQKHCGVPFTPVEFHYEKMQAQFFVENANIAFALRNVSGKIYNEAKERISVFVDPCDAPRSVQKELRSAKVEQMKLTLNRQNEGSQQFLHIQRLRFDPGLMTSGMGTVQNPGNAMTTCLQLYGENVPKVKSAWEMDKVQWLEPDEMCADRNPVCNTSPDEATSLSSILELFPKLLCLDGQETPPATHRGAEARQCLPTCKGSFFGSNELKSLVLQFLQQYYLIHDYGDRQYLLGAYHDEACFSLTIPFNSQDPASAPANPHSGHTPTSYFPFSPRSSFYQYLEENRNMKKLKDPFLQVKLLKHTKCDIVGALCVLPQTRHDFSSFVVDTWFQTVSSWVLLLVVAVGGWSQGCVRAFTRTFITIPATSSSLCIVNDELFVREASPSERQSLHFPSQCLLPLPASCSSSPQSSSELCGLSPPSMG", "length": 546, "header": "tr|A0A5G2QIU1-1|A0A5G2QIU1_PIG Isoform 1 of NTF2 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QIU1-1" }, "locus": { "chromosome": "X", "start_pos": 84116053, "end_pos": 84109455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068019.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068019.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063831.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063831.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "poly(A)+ mRNA export from nucleus", "id": "GO:0016973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016973", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIU1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 546, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIU1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIU1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU1" }, { "id": "PS50177", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50177" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NTF2", "eco_id": "ECO_0000259", "start_pos": 335, "end_pos": 502, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 278, "end_pos": 280 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIU3-1", "uniprot_ac": "A0A5G2QIU3", "uniprot_id": "A0A5G2QIU3_PIG", "mass": { "chemical_mass": 44692.0, "monoisotopic_mass": 44692.0 }, "refseq": { "ac": "XP_020930535", "name": "sphingosine-1-phosphate phosphatase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930535" }, "gene_names": [ { "name": "SGPP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QIU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ] }, { "name": "SGPP2", "type": "synonym", "evidence": [ { "id": "XP_020930535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930535" } ] } ], "protein_names": [ { "name": "Sphingosine-1-phosphate phosphatase 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QIU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3/entry#names_and_taxonomy" } ] }, { "name": "sphingosine-1-phosphate phosphatase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020930535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930535" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SGPP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3", "locus": { "chromosome": "15", "start_pos": 124462851, "end_pos": 124318955, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025993", "url": "https://www.ensembl.org/id/ENSSSCG00000025993" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025993", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025993", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03388", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03388", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524832", "url": "https://www.ncbi.nlm.nih.gov/gene/100524832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524832", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFMVGIV", "url": "https://omabrowser.org/oma/group/KFMVGIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QIU3", "url": "https://www.orthodb.org/?gene=A0A5G2QIU3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14969:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9845614", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845614", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020930535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "27514", "url": "https://www.rhea-db.org/rhea/27514", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "27518", "url": "https://www.rhea-db.org/rhea/27518", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAELLRSLQDSQLVARFQRRCGLFPAPEEGLGESCADPVEGAARAPALEHLPAANGKGAGEPANGLRRVAVPQAYVQKYVVKNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDPYLSRRLMIIWVLVMYIGQVAKDILKWPRPSSPPVVKLEKRVIAEYGMPSTHAMAATAISFTLLISTMDRYQYPFVLGLALVVVFSSLVCLSRLYTGMHTVLDVLGGVLITAVLISLTYPAWTLIDRLDSASPLFPVCVLVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIGFWINHFFQLVSEPTESLPVVQNIPPLTRDMLVLGLTKFTVGIVLILLVRQLVQNLSLQVLYSWFKVVARNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLP", "length": 399, "header": "tr|A0A5G2QIU3-1|A0A5G2QIU3_PIG Isoform 1 of Sphingosine-1-phosphate phosphatase 2 OS=Sus scrofa OX=9823 GN=SGPP2 PE=3 SV=1 CANONICAL=A0A5G2QIU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3/entry", "sequence": { "sequence": "MAELLRSLQDSQLVARFQRRCGLFPAPEEGLGESCADPVEGAARAPALEHLPAANGKGAGEPANGLRRVAVPQAYVQKYVVKNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDPYLSRRLMIIWVLVMYIGQVAKDILKWPRPSSPPVVKLEKRVIAEYGMPSTHAMAATAISFTLLISTMDRYQYPFVLGLALVVVFSSLVCLSRLYTGMHTVLDVLGGVLITAVLISLTYPAWTLIDRLDSASPLFPVCVLVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIGFWINHFFQLVSEPTESLPVVQNIPPLTRDMLVLGLTKFTVGIVLILLVRQLVQNLSLQVLYSWFKVVARNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLP", "length": 399, "header": "tr|A0A5G2QIU3-1|A0A5G2QIU3_PIG Isoform 1 of Sphingosine-1-phosphate phosphatase 2 OS=Sus scrofa OX=9823 GN=SGPP2 PE=3 SV=1 CANONICAL=A0A5G2QIU3-1" }, "locus": { "chromosome": "15", "start_pos": 124459301, "end_pos": 124319017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071495.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071495.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061939.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061939.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524832", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524832", "resource": "KEGG Pathway" }, { "id": "R-SSC-9845614", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845614", "resource": "Reactome", "description": "Sphingolipid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZTE7-1", "protein_name": "Sphingosine-1-phosphate phosphatase 2", "gene_name": "SGPP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARLLGTLRGSQPVARFQRCCGLFPAGEEGGGDPAEGVRSSVVCNGGGAGGRRGAGAAGCGAPNGVRGGRGPQGCVQKYVVKNYFYYYLFKFSAALGEEIFYITFLPFIYWNIDHSVSRRMIIIWSIVMYIGQVSKDILKWPRPLSPPVVKLEMRTDAEYGMPSTHAMAATAISFSFFITTTNQYKYPFELGLTAAFVFSTLVCLSRLYTGMHTVLDVIGGALISAVLLVLLYPVWDSIDHVLLTSPFCPLLSIAVPLLLCYNYPKLDYYSPTRGDTTTILGAGAGATVGFWLNNQYVAPAHVGSTMAFPLITSTVVVLMLARFLVGLLVILLTRQLMKNVVLRVLCYCYTFPIADLDARRRLEVEAASHTEQPVLCPARRHMGPEGTAVWLQDYPHVHCSGGTVVYPATDEHMTTVQKKSSTPSFCSHSLSICSNQLSYFMQ", "length": 443 }, "evidence": [ { "id": "A0A5G2QIU3", "url": "https://omabrowser.org/oma/group/A0A5G2QIU3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LUJ0-1", "protein_name": "Sphingosine-1-phosphate phosphatase 2", "gene_name": "Sgpp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAELLRSLRDSELVARFQRRCGLFPGQEASGEKHVVKNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDPYLSRRLVVIWVLVMYIGQVAKDILKWPRPSSPPVVKLEKRVIAEYGMPSTHAMAATAISFTLLISTMDRYQYPFILGLIMAVVFSTLVSLSRLYTGMHTVLDVLGGVLITAVLIALTYPAWTLIDSLDSASPLFPVCVIVVPFLLCYNYPVSDYYSPTRADTTTVVAAGAGVTVGFWINHFFQLVSKPTPSLPVIQNIPPITTDMLVLGLTKFMVGIMLILLVRQLVQNLSLQVLFSWFKVVTKNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLL", "length": 354 }, "evidence": [ { "id": "A0A5G2QIU3", "url": "https://omabrowser.org/oma/group/A0A5G2QIU3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23501-1", "protein_name": "Dihydrosphingosine 1-phosphate phosphatase YSR3", "gene_name": "YSR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTIIQTVTELGVTEDTIKVQMAPSGGKHLLADPGNHPAEHFESQMSWLRFQTRQYLTRFTDNQSDFVHSLQKKHRTPFRDVYFKYTSLMGSHMFYVIVLPMPVWLGYRDLTRDMIYVLGYSIYLSGYLKDYWCLPRPKSPPVDRITLSEYTTKEYGAPSSHSANATAVSLLFFWRICLSDTLVWPTKLLLLSLVIFYYLTLVFGRVYCGMHGMLDLFSGAAVGAICFFIRIWVVHALRNFQIGEHLWFPLLSVAWGLFILFNHVRPIDECPCFEDSVAFIGVVSGLDCSDWLTERYGWNLVCSRYASCGSKVFLRPLVGVASVIVWKDVISKTAVYTLLIKLLRFHDDRSEKVHFHNETSEEEECLLYSGVSKVEIVGRFLIYAGIPTTVFLLCPVFFTWTNLR", "length": 404 }, "evidence": [ { "id": "A0A5G2QIU3", "url": "https://omabrowser.org/oma/group/A0A5G2QIU3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q810K3-1", "protein_name": "Sphingosine-1-phosphate phosphatase 2", "gene_name": "Sgpp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAELLRSLRDSQLVARFQRRCGLFPAREASGEEHVVKNYFYYYLFRFSAALGQEVFYITFLPFTHWNIDPNLSRRLVVIWVLVMYIGQVAKDILKWPRPSFPPVVRLEKRIIAEYGMPSTHAMAATAISFTLLISTMDRYQYPFILGLMMAVVFSTLVCLSRLYTGMHTVLDILGGVLITAVLIALTYPAWTLIDSLDSASPLFPVCVIVVPFLLCYNYPVSDYYSPTRADTTTIVAAGAGVTLGFWINHFFQLVSKPTPSLPVIQNIPPLTTDMLVLGLTKFMVGIMLILLVRQLVQKLSLQVLFSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLL", "length": 354 }, "evidence": [ { "id": "A0A5G2QIU3", "url": "https://omabrowser.org/oma/group/A0A5G2QIU3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWX5-1", "protein_name": "Sphingosine-1-phosphate phosphatase 2", "gene_name": "SGPP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAELLRSLQDSQLVARFQRRCGLFPAPDEGPRENGADPTERAARVPGVEHLPAANGKGGEAPANGLRRAAAPEAYVQKYVVKNYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVAKDVLKWPRPSSPPVVKLEKRLIAEYGMPSTHAMAATAIAFTLLISTMDRYQYPFVLGLVMAVVFSTLVCLSRLYTGMHTVLDVLGGVLITALLIVLTYPAWTFIDCLDSASPLFPVCVIVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIGFWINHFFQLVSKPAESLPVIQNIPPLTTYMLVLGLTKFAVGIVLILLVRQLVQNLSLQVLYSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLP", "length": 399 }, "evidence": [ { "id": "A0A5G2QIU3", "url": "https://omabrowser.org/oma/group/A0A5G2QIU3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "sphingosine metabolic process", "id": "GO:0006670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006670", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "pmid": "" }, { "name": "regulation of type B pancreatic cell proliferation", "id": "GO:0061469", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061469", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "pmid": "" }, { "name": "phospholipid dephosphorylation", "id": "GO:0046839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046839", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingosine-1-phosphate phosphatase activity", "id": "GO:0042392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042392", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "27514", "name": "", "equation": "sphinganine 1-phosphate + H2O = sphinganine + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27514", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27514" } ] }, { "id": "27518", "name": "", "equation": "sphing-4-enine 1-phosphate + H2O = sphing-4-enine + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27518", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27518" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU3" }, { "id": "SM00014", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatidic acid phosphatase type 2/haloperoxidase", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 233, "start_aa": "Arg", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 344, "end_pos": 346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIU4-1", "uniprot_ac": "A0A5G2QIU4", "uniprot_id": "A0A5G2QIU4_PIG", "mass": { "chemical_mass": 16144.0, "monoisotopic_mass": 16144.0 }, "refseq": {}, "gene_names": [ { "name": "LUC7L", "type": "recommended", "evidence": [ { "id": "A0A5G2QIU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QIU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LUC7L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4", "locus": { "chromosome": "3", "start_pos": 41470977, "end_pos": 41449002, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007979", "url": "https://www.ensembl.org/id/ENSSSCG00000007979" } ] } } ], "crossref": [ { "id": "A0A5G2QIU4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007979", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007979", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QIU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDSDCLKVRPSPRLRPPTTFPSRPRAGIDALSPGVPRGGKEPSWLEADAASFRRRRRRRRRRCRRRLLCLPSLREASRPSLPLPPATMSAQAQMRALLDQLMGTARDGSVYLCLPTSICKGVAESLMFIEPRRNQTEGQVYR", "length": 143, "header": "tr|A0A5G2QIU4-1|A0A5G2QIU4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LUC7L PE=1 SV=2 CANONICAL=A0A5G2QIU4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4/entry", "sequence": { "sequence": "MSDSDCLKVRPSPRLRPPTTFPSRPRAGIDALSPGVPRGGKEPSWLEADAASFRRRRRRRRRRCRRRLLCLPSLREASRPSLPLPPATMSAQAQMRALLDQLMGTARDGSVYLCLPTSICKGVAESLMFIEPRRNQTEGQVYR", "length": 143, "header": "tr|A0A5G2QIU4-1|A0A5G2QIU4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LUC7L PE=1 SV=2 CANONICAL=A0A5G2QIU4-1" }, "locus": { "chromosome": "3", "start_pos": 41444786, "end_pos": 41442558, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064366.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064366.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 143, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIU4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIX7-1", "uniprot_ac": "A0A5G2QIX7", "uniprot_id": "A0A5G2QIX7_PIG", "mass": { "chemical_mass": 20860.0, "monoisotopic_mass": 20860.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QIX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047493", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047493", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRVSENSGTMLNAPTSILQGCQKEKRERRGQKKILKEIIAENFSNMGKEPLTQIQKAQRVSYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQVTYKGTPIRLSADFSAETLQARREWHDILNVIKGKNLQPRLFYPARLSFRFEGEIKTLTDKQKLRELSNTKPALQQIPKELL", "length": 179, "header": "tr|A0A5G2QIX7-1|A0A5G2QIX7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIX7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7/entry", "sequence": { "sequence": "MKRVSENSGTMLNAPTSILQGCQKEKRERRGQKKILKEIIAENFSNMGKEPLTQIQKAQRVSYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQVTYKGTPIRLSADFSAETLQARREWHDILNVIKGKNLQPRLFYPARLSFRFEGEIKTLTDKQKLRELSNTKPALQQIPKELL", "length": 179, "header": "tr|A0A5G2QIX7-1|A0A5G2QIX7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIX7-1" }, "locus": { "chromosome": "3", "start_pos": 46130420, "end_pos": 46129884, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075596.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075596.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061974.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061974.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIX7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 179, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIX7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIX7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 110, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QIX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIX7" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 113, "end_pos": 177, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIY2-1", "uniprot_ac": "A0A5G2QIY2", "uniprot_id": "A0A5G2QIY2_PIG", "mass": { "chemical_mass": 17010.0, "monoisotopic_mass": 17010.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QIY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIY2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050712", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050712", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIAQTGQQTENQMKKHESNIRDLWYNIKLANLRIIGITEGEEKEKGIENIFEEIMAENFPNLKDTDIKIQEAQRAPSKLNPNRPTLEHNIIKMAKVKERILKAAREKQSINYKGTPIRLSADFSTETLQARTEWQDIFAERKTSAA", "length": 147, "header": "tr|A0A5G2QIY2-1|A0A5G2QIY2_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIY2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2/entry", "sequence": { "sequence": "MEIAQTGQQTENQMKKHESNIRDLWYNIKLANLRIIGITEGEEKEKGIENIFEEIMAENFPNLKDTDIKIQEAQRAPSKLNPNRPTLEHNIIKMAKVKERILKAAREKQSINYKGTPIRLSADFSTETLQARTEWQDIFAERKTSAA", "length": 147, "header": "tr|A0A5G2QIY2-1|A0A5G2QIY2_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QIY2-1" }, "locus": { "chromosome": "5", "start_pos": 84109419, "end_pos": 84108979, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066684.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066684.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061979.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061979.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIY2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIY2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIY2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QIY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY2" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 123, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QIY4-1", "uniprot_ac": "A0A5G2QIY4", "uniprot_id": "A0A5G2QIY4_PIG", "mass": { "chemical_mass": 6556.0, "monoisotopic_mass": 6556.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QIY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QIY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042065", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042065", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QIY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ILKRNAVSFKFNKKGMGNCFQTVCLYCDVLGMKILWSEEFDEGCKAACNVMGNGVNNGGT", "length": 60, "header": "tr|A0A5G2QIY4-1|A0A5G2QIY4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QIY4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4/entry", "sequence": { "sequence": "ILKRNAVSFKFNKKGMGNCFQTVCLYCDVLGMKILWSEEFDEGCKAACNVMGNGVNNGGT", "length": 60, "header": "tr|A0A5G2QIY4-1|A0A5G2QIY4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QIY4-1" }, "locus": { "chromosome": "3", "start_pos": 44276240, "end_pos": 44275798, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066473.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066473.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063881.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063881.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QIY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 60, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QIY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QIY4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJ16-1", "uniprot_ac": "A0A5G2QJ16", "uniprot_id": "A0A5G2QJ16_PIG", "mass": { "chemical_mass": 21055.0, "monoisotopic_mass": 21055.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QJ16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJ16", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ16", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVNNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERIIDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPSLKDTGFKIQEAQRAPN", "length": 180, "header": "tr|A0A5G2QJ16-1|A0A5G2QJ16_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJ16-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJ16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVNNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERIIDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPSLKDTGFKIQEAQRAPN", "length": 180, "header": "tr|A0A5G2QJ16-1|A0A5G2QJ16_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJ16-1" }, "locus": { "chromosome": "4", "start_pos": 33853291, "end_pos": 33852752, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092855.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092855.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075186.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075186.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJ16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 180, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJ16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ16" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJ16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ16" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 179, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJ18-1", "uniprot_ac": "A0A5G2QJ18", "uniprot_id": "A0A5G2QJ18_PIG", "mass": { "chemical_mass": 22838.0, "monoisotopic_mass": 22838.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJ18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045514", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045514", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIRVHMSFLRKVLSGYMPKSGIAGSYGSCTYNFLRYLHTVFHSSCTHLHSHQQCRRVPFSLHPFQYLLFVDLLMMAILTGVGWYLMVVLICISLIISVVSISSCAFWPSVYLLWRNVYSGLLPIFHLDCWLFLPLSCISCLYILEINPLLVASFKTIFSHSVSCVFVIFMISFAVKNLVSLIRFHWFIFAFISVALGD", "length": 199, "header": "tr|A0A5G2QJ18-1|A0A5G2QJ18_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJ18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18/entry", "sequence": { "sequence": "MNIRVHMSFLRKVLSGYMPKSGIAGSYGSCTYNFLRYLHTVFHSSCTHLHSHQQCRRVPFSLHPFQYLLFVDLLMMAILTGVGWYLMVVLICISLIISVVSISSCAFWPSVYLLWRNVYSGLLPIFHLDCWLFLPLSCISCLYILEINPLLVASFKTIFSHSVSCVFVIFMISFAVKNLVSLIRFHWFIFAFISVALGD", "length": 199, "header": "tr|A0A5G2QJ18-1|A0A5G2QJ18_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJ18-1" }, "locus": { "chromosome": "1", "start_pos": 228532900, "end_pos": 228532304, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072157.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072157.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064452.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064452.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJ18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 199, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJ18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ18" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJ29-1", "uniprot_ac": "A0A5G2QJ29", "uniprot_id": "A0A5G2QJ29_PIG", "mass": { "chemical_mass": 36712.0, "monoisotopic_mass": 36712.0 }, "refseq": {}, "gene_names": [ { "name": "ZIC4", "type": "recommended", "evidence": [ { "id": "A0A5G2QJ29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ] } ], "protein_names": [ { "name": "Zic family member 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QJ29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZIC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29", "locus": { "chromosome": "13", "start_pos": 87722146, "end_pos": 87740921, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011693", "url": "https://www.ensembl.org/id/ENSSSCG00000011693" } ] } } ], "crossref": [ { "id": "A0A5G2QJ29", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ29", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011693", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011693", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TEHIGGP", "url": "https://omabrowser.org/oma/group/TEHIGGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45718", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45718", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45718:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45718:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45718:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45718:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKC8", "url": "https://www.uniprot.org/uniprotkb/F1SKC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRYKTSLVMRKRIRLYRNTLKESSSSSGHHGPQLAAASSPLVFPGLHEQPPQASPSGTLNGLLRLGLPGDMYARPEPFPPGPVARSDALAAAAALHGYGSMNLTMNIAAPHGPGAFFRYMRQPIKQELICKWLAADGPAPPRLCSKTFSTMHELVTHVTVEHVGGPEQANHICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPPSSGYDSAAPSALVSPSSDFGREPPVASSAAVVARGADLSE", "length": 335, "header": "tr|A0A5G2QJ29-1|A0A5G2QJ29_PIG Isoform 1 of Zic family member 4 OS=Sus scrofa OX=9823 GN=ZIC4 PE=3 SV=2 CANONICAL=A0A5G2QJ29-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29/entry", "sequence": { "sequence": "MRYKTSLVMRKRIRLYRNTLKESSSSSGHHGPQLAAASSPLVFPGLHEQPPQASPSGTLNGLLRLGLPGDMYARPEPFPPGPVARSDALAAAAALHGYGSMNLTMNIAAPHGPGAFFRYMRQPIKQELICKWLAADGPAPPRLCSKTFSTMHELVTHVTVEHVGGPEQANHICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPPSSGYDSAAPSALVSPSSDFGREPPVASSAAVVARGADLSE", "length": 335, "header": "tr|A0A5G2QJ29-1|A0A5G2QJ29_PIG Isoform 1 of Zic family member 4 OS=Sus scrofa OX=9823 GN=ZIC4 PE=3 SV=2 CANONICAL=A0A5G2QJ29-1" }, "locus": { "chromosome": "13", "start_pos": 87738429, "end_pos": 87726870, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080191.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080191.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063931.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063931.2" } ] } }, { "isoform_ac": "F1SKC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKC8/entry", "sequence": { "sequence": "MRYKTSLVMRKRIRLYRNTLKESREKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPPSSGYDSAAPSALVSPSSDFGREPPVASSAAVVARGADLSE", "length": 129, "header": "tr|F1SKC8-1|F1SKC8_PIG Computationally mapped isoform of Zic family member 4 OS=Sus scrofa OX=9823 GN=ZIC4 PE=3 SV=4 CANONICAL=A0A5G2QJ29-1" }, "locus": { "chromosome": "13", "start_pos": 87738429, "end_pos": 87726870, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012801.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012801.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012463.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012463.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q8N9L1-1", "protein_name": "Zinc finger protein ZIC 4", "gene_name": "ZIC4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRYKTSLVMRKRLRLYRNTLKESSSSSGHHGPQLTAASSPSVFPGLHEEPPQASPSRPLNGLLRLGLPGDMYARPEPFPPGPAARSDALAAAAALHGYGGMNLTVNLAAPHGPGAFFRYMRQPIKQELICKWLAADGTATPSLCSKTFSTMHELVTHVTVEHVGGPEQANHICFWEECPRQGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFRCEFEGCERRFANSSDRKKHSHVHTSDKPYTCKVRGCDKCYTHPSSLRKHMKVHGRSPPPSSGYDSATPSALVSPSSDCGHKSQVASSAAVAARTADLSE", "length": 334 }, "evidence": [ { "id": "A0A5G2QJ29", "url": "https://omabrowser.org/oma/group/A0A5G2QJ29/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJ29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJ29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ29" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJ29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ29" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 176, "end_pos": 203, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 247, "end_pos": 249 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJ85-1", "uniprot_ac": "A0A5G2QJ85", "uniprot_id": "A0A5G2QJ85_PIG", "mass": { "chemical_mass": 37100.0, "monoisotopic_mass": 37100.0 }, "refseq": {}, "gene_names": [ { "name": "ARFIP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QJ85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ] }, { "name": "TRIM3", "type": "recommended", "evidence": [ { "id": "A0A5G2QJ85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ] }, { "name": "ARFIP2", "type": "synonym", "evidence": [ { "id": "A0A5G2QJ85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ] } ], "protein_names": [ { "name": "Tripartite motif containing 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QJ85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85", "locus": { "chromosome": "9", "start_pos": 3282366, "end_pos": 3272798, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059302", "url": "https://www.ensembl.org/id/ENSSSCG00000059302" } ] } } ], "crossref": [ { "id": "A0A5G2QJ85", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ85", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07660", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07660", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518621", "url": "https://www.ncbi.nlm.nih.gov/gene/100518621", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030798", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030798", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SG63", "url": "https://www.orthodb.org/?gene=A0A4X1SG63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12141:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12141:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SG63", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SG63-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SGD4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMN9", "url": "https://www.uniprot.org/uniprotkb/F1RMN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMN9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDGILGKAATMEIPIHGNGDAGQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSAPPAGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKAGVRGRSRRGHHGQEGGQPQLRGPADGQAVPGVQHLPGPVPVPQGSALPAHLL", "length": 343, "header": "tr|A0A5G2QJ85-1|A0A5G2QJ85_PIG Isoform 1 of Tripartite motif containing 3 OS=Sus scrofa OX=9823 GN=TRIM3 PE=1 SV=1 CANONICAL=A0A5G2QJ85-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SG63-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG63/entry", "sequence": { "sequence": "MKPALCLVAMGALVMDSSPQCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ", "length": 256, "header": "tr|A0A4X1SG63-1|A0A4X1SG63_PIG Computationally mapped isoform of Tripartite motif containing 3 OS=Sus scrofa OX=9823 GN=ARFIP2 PE=1 SV=1 CANONICAL=A0A5G2QJ85-1" }, "locus": { "chromosome": "9", "start_pos": 3254304, "end_pos": 3251387, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050270.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050270.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034194.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034194.2" } ] } }, { "isoform_ac": "A0A4X1SGD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGD4/entry", "sequence": { "sequence": "MTDGILGKAATMEIPIHGNGDAGQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSAPPAGPGDEVARGIAGEKFDIVKKWGINTYKEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ", "length": 267, "header": "tr|A0A4X1SGD4-1|A0A4X1SGD4_PIG Computationally mapped isoform of Tripartite motif containing 3 OS=Sus scrofa OX=9823 GN=ARFIP2 PE=1 SV=1 CANONICAL=A0A5G2QJ85-1" }, "locus": { "chromosome": "9", "start_pos": 3254304, "end_pos": 3250996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057155.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057155.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057893.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057893.1" } ] } }, { "isoform_ac": "A0A5G2QJ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85/entry", "sequence": { "sequence": "MTDGILGKAATMEIPIHGNGDAGQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSAPPAGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKAGVRGRSRRGHHGQEGGQPQLRGPADGQAVPGVQHLPGPVPVPQGSALPAHLL", "length": 343, "header": "tr|A0A5G2QJ85-1|A0A5G2QJ85_PIG Isoform 1 of Tripartite motif containing 3 OS=Sus scrofa OX=9823 GN=TRIM3 PE=1 SV=1 CANONICAL=A0A5G2QJ85-1" }, "locus": { "chromosome": "9", "start_pos": 3265643, "end_pos": 3250996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083574.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083574.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062085.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062085.1" } ] } }, { "isoform_ac": "F1RMN9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMN9/entry", "sequence": { "sequence": "MAPQGQRGWLKERPPTSPRRHFRPHNRLRGRLLLPGRGRHFRRVPDLLLGSRRELDPEIPARPGPGALRGRAARPEGAGVETLTPVPSLAMTDGILGKAATMEIPIHGNGDAGQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSGRHPSHSAPPAGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ", "length": 431, "header": "tr|F1RMN9-1|F1RMN9_PIG Computationally mapped isoform of Tripartite motif containing 3 OS=Sus scrofa OX=9823 GN=TRIM3 PE=1 SV=3 CANONICAL=A0A5G2QJ85-1" }, "locus": { "chromosome": "9", "start_pos": 3254304, "end_pos": 3249938, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015975.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015975.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015554.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015554.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "phosphatidylinositol-4-phosphate binding", "id": "GO:0070273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070273", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "GTP-dependent protein binding", "id": "GO:0030742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030742", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "membrane curvature sensor activity", "id": "GO:0140090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140090", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "protein localization to phagophore assembly site", "id": "GO:0034497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034497", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "regulation of Arp2/3 complex-mediated actin nucleation", "id": "GO:0034315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034315", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" }, { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJ85-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 343, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJ85-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJ85" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJ85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ85" }, { "id": "PS50870", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50870" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AH", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 293, "start_aa": "Thr", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJC2-1", "uniprot_ac": "A0A5G2QJC2", "uniprot_id": "A0A5G2QJC2_PIG", "mass": { "chemical_mass": 19833.0, "monoisotopic_mass": 19833.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJC2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJC2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044562", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044562", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44826", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44826", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44826:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44826:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QJC2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLLSQRLLNVFCPIHPPIHSFIYPSAHPLIHPPIHSSTHPSTHPPTHPSTYPSTLLPIHPLIHPPIHPSTHPLIHLPSTHPLTHPLINSPISIHPSTLPSTHPRIHSSIHLPPIHPSIHLLIHLPIHSSVRPPTHPSTHPVIHLPIHSSTNPSIHPFTHPLIHSPIYLSDTNSLNSY", "length": 179, "header": "tr|A0A5G2QJC2-1|A0A5G2QJC2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJC2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2/entry", "sequence": { "sequence": "MALLLSQRLLNVFCPIHPPIHSFIYPSAHPLIHPPIHSSTHPSTHPPTHPSTYPSTLLPIHPLIHPPIHPSTHPLIHLPSTHPLTHPLINSPISIHPSTLPSTHPRIHSSIHLPPIHPSIHLLIHLPIHSSVRPPTHPSTHPVIHLPIHSSTNPSIHPFTHPLIHSPIYLSDTNSLNSY", "length": 179, "header": "tr|A0A5G2QJC2-1|A0A5G2QJC2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJC2-1" }, "locus": { "chromosome": "10", "start_pos": 27865826, "end_pos": 27865290, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071263.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071263.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064032.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064032.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJC2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJC2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJC2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 179, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJC2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJC2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJF7-1", "uniprot_ac": "A0A5G2QJF7", "uniprot_id": "A0A5G2QJF7_PIG", "mass": { "chemical_mass": 14866.0, "monoisotopic_mass": 14866.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041181", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041181", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIEGSYGSSMYRFLRYLQTVLHGGCSSLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVRWSLMVVLICISLIISDVEHFSCVCWPSVYLLWRNVYSGLLPIFPLIDCFFAVGLYKLFMYSRD", "length": 129, "header": "tr|A0A5G2QJF7-1|A0A5G2QJF7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7/entry", "sequence": { "sequence": "MPKSGIEGSYGSSMYRFLRYLQTVLHGGCSSLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVRWSLMVVLICISLIISDVEHFSCVCWPSVYLLWRNVYSGLLPIFPLIDCFFAVGLYKLFMYSRD", "length": 129, "header": "tr|A0A5G2QJF7-1|A0A5G2QJF7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJF7-1" }, "locus": { "chromosome": "1", "start_pos": 114817661, "end_pos": 114817275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082764.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082764.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064072.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064072.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJF7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJG9-1", "uniprot_ac": "A0A5G2QJG9", "uniprot_id": "A0A5G2QJG9_PIG", "mass": { "chemical_mass": 113549.0, "monoisotopic_mass": 113549.0 }, "refseq": {}, "gene_names": [ { "name": "ARHGAP36", "type": "recommended", "evidence": [ { "id": "A0A5G2QJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein 36", "type": "recommended", "evidence": [ { "id": "A0A5G2QJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.", "evidence": [ { "database": "UniProtKB", "id": "K7GL85", "url": "https://www.uniprot.org/uniprotkb/K7GL85#function" }, { "database": "UniProtKB", "id": "ARBA00055252", "url": "https://www.uniprot.org/uniprotkb/ARBA00055252#function" }, { "database": "UniProtKB", "id": "K7GPR6", "url": "https://www.uniprot.org/uniprotkb/K7GPR6#function" }, { "database": "UniProtKB", "id": "K7GSS8", "url": "https://www.uniprot.org/uniprotkb/K7GSS8#function" }, { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012669", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012669", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04376", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511614", "url": "https://www.ncbi.nlm.nih.gov/gene/100511614", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511614", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511614", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NTFEKWF", "url": "https://omabrowser.org/oma/group/NTFEKWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "K7GSS8", "url": "https://www.orthodb.org/?gene=K7GSS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12635", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12635", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12635:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12635:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL85", "url": "https://www.uniprot.org/uniprotkb/K7GL85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL85-1", "url": "https://www.uniprot.org/uniprotkb/K7GL85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPR6", "url": "https://www.uniprot.org/uniprotkb/K7GPR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPR6-1", "url": "https://www.uniprot.org/uniprotkb/K7GPR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSS8", "url": "https://www.uniprot.org/uniprotkb/K7GSS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSS8-1", "url": "https://www.uniprot.org/uniprotkb/K7GSS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISIHSLSELERLKLQETAYHELVARHFLSEFNPERALPTDRPNTLEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQLELRAAMQVEEATTGRAGGRRRRRGNVVQRVFGRIRRFFSRRRDEPSLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISLPIGQRLLGSKRKMSLNPIAKQIPQVVEACCSFIEKYGLSTVGIFTLEYSEERVRKLREEFDQGLDVVLDDTRNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVLGNRMTSTNLALVFGSALLKRGQSAKRESRKTRLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRRIQSARIKMEEDALLSDPVENSAEVRAAVLAQSKPFDEGQFPAGGQTLAEGQALAEGQALGEGQALPEGQVFAEDEPLEEDESSEEDVSVNEELVFEYLNQGIVFGEVQGLEIPNDLEIQGPHLEGIPELDEEEEEEEDDDDDDTLNFDDLPPLEDILDPDDEIPELIEIPDFEEIPYFDMVPEPEGVLYVQEIPNPGENPNHDLEEGPDFEDYQNLNLAEVPYLDVILNNEEAPVTDEIPDHADDSDDDENPDSGEDPNLEEVPALAEIPNDEASTAEEVPDHEEALEVSGISDSDEDLDFDEVPALHVVPSPEEAPGGHEVPNHEESLEVNGLSDSEEDPNLEEVPALDGVPNDEEISDTEEIPDYEETPEDNEIPGSEAESSPEEVPALHVVTSPEDVSNLDEIQNQEESSDVSGVSHHEEASEAEEIPGHREASDVSGVQDAEENPSLEEDSVEDEVTSVAPEPEDVSLLNTIPDPQPDLAVHLEEIMNVEAVPMPNSLDSKGAQNPKATQLSKKDADVTFLVDTTFLKNKSQPGQVMDSRSSSESVKTNTCFLPSMKCCKLPAPALFLMCLVKAVRLVVGWWWLLGGRPLPRFPGGVAHLV", "length": 1018, "header": "tr|A0A5G2QJG9-1|A0A5G2QJG9_PIG Isoform 1 of Rho GTPase-activating protein 36 OS=Sus scrofa OX=9823 GN=ARHGAP36 PE=4 SV=1 CANONICAL=A0A5G2QJG9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9/entry", "sequence": { "sequence": "MISIHSLSELERLKLQETAYHELVARHFLSEFNPERALPTDRPNTLEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQLELRAAMQVEEATTGRAGGRRRRRGNVVQRVFGRIRRFFSRRRDEPSLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISLPIGQRLLGSKRKMSLNPIAKQIPQVVEACCSFIEKYGLSTVGIFTLEYSEERVRKLREEFDQGLDVVLDDTRNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVLGNRMTSTNLALVFGSALLKRGQSAKRESRKTRLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRRIQSARIKMEEDALLSDPVENSAEVRAAVLAQSKPFDEGQFPAGGQTLAEGQALAEGQALGEGQALPEGQVFAEDEPLEEDESSEEDVSVNEELVFEYLNQGIVFGEVQGLEIPNDLEIQGPHLEGIPELDEEEEEEEDDDDDDTLNFDDLPPLEDILDPDDEIPELIEIPDFEEIPYFDMVPEPEGVLYVQEIPNPGENPNHDLEEGPDFEDYQNLNLAEVPYLDVILNNEEAPVTDEIPDHADDSDDDENPDSGEDPNLEEVPALAEIPNDEASTAEEVPDHEEALEVSGISDSDEDLDFDEVPALHVVPSPEEAPGGHEVPNHEESLEVNGLSDSEEDPNLEEVPALDGVPNDEEISDTEEIPDYEETPEDNEIPGSEAESSPEEVPALHVVTSPEDVSNLDEIQNQEESSDVSGVSHHEEASEAEEIPGHREASDVSGVQDAEENPSLEEDSVEDEVTSVAPEPEDVSLLNTIPDPQPDLAVHLEEIMNVEAVPMPNSLDSKGAQNPKATQLSKKDADVTFLVDTTFLKNKSQPGQVMDSRSSSESVKTNTCFLPSMKCCKLPAPALFLMCLVKAVRLVVGWWWLLGGRPLPRFPGGVAHLV", "length": 1018, "header": "tr|A0A5G2QJG9-1|A0A5G2QJG9_PIG Isoform 1 of Rho GTPase-activating protein 36 OS=Sus scrofa OX=9823 GN=ARHGAP36 PE=4 SV=1 CANONICAL=A0A5G2QJG9-1" }, "locus": { "chromosome": "X", "start_pos": 107536251, "end_pos": 107529732, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071415.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071415.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062185.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062185.1" } ] } }, { "isoform_ac": "K7GL85-1", "url": "https://www.uniprot.org/uniprotkb/K7GL85/entry", "sequence": { "sequence": "MISIHSLSELERLKLQETAYHELVARHFLSEFNPERALPTDRPNTLEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQLELRAAMQVEEATTGRAGGRRRRRGNVVQRVFGRIRRFFSRRRDEPSLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISLPIGQRLLGSKRKMSLNPIAKQIPQVVEACCSFIEKYGLSTVGIFTLEYSEERVRKLREEFDQGLDVVLDDTRNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVLGNRMTSTNLALVFGSALLKRGQSAKRESRKTRLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRRIQSARIKMEEDALLSDPVENSAEVRAAVLAQSKPFDEDSSEEPAVPPGTARSHDDEEGAGNPPIPEQDRPLLRVPRAKEAQTGIGYFFP", "length": 502, "header": "tr|K7GL85-1|K7GL85_PIG Computationally mapped isoform of Rho GTPase-activating protein 36 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QJG9-1" }, "locus": { "chromosome": "X", "start_pos": 107536686, "end_pos": 107529732, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035187.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035187.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028614.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028614.2" } ] } }, { "isoform_ac": "K7GPR6-1", "url": "https://www.uniprot.org/uniprotkb/K7GPR6/entry", "sequence": { "sequence": "MAWMLDCLFASAFEPRPRRVNVLGGAPGHNPDRRTKMISIHSLSELERLKLQETAYHELVARHFLSEFNPERALPTDRPNTLEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQLELRAAMQVEEATTGRAGGRRRRRGNVVQRVFGRIRRFFSRRRDEPSLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISLPIGQRLLGSKRKMSLNPIAKQIPQVVEACCSFIEKYGLSTVGIFTLEYSEERVRKLREEFDQGLDVVLDDTRNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVLGNRMTSTNLALVFGSALLKRGQSAKRESRKTRLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRRIQSARIKMEEDALLSDPVENSAEVRAAVLAQSKPFDEDSSEEPAVPPGTARSHDDEEGAGNPPIPEQDRPLLRVPRAKEAQTGIGYFFP", "length": 538, "header": "tr|K7GPR6-1|K7GPR6_PIG Computationally mapped isoform of Rho GTPase-activating protein 36 OS=Sus scrofa OX=9823 GN=ARHGAP36 PE=4 SV=1 CANONICAL=A0A5G2QJG9-1" }, "locus": { "chromosome": "X", "start_pos": 107536686, "end_pos": 107506228, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035267.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035267.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029881.1", "url": "https://www.ensembl.org/id/ENSSSCP00000029881.1" } ] } }, { "isoform_ac": "K7GSS8-1", "url": "https://www.uniprot.org/uniprotkb/K7GSS8/entry", "sequence": { "sequence": "MGGCIPFLKAARTLCPRIMPPLLLLSAFIFLVNVLGGAPGHNPDRRTKMISIHSLSELERLKLQETAYHELVARHFLSEFNPERALPTDRPNTLEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQLELRAAMQVEEATTGRAGGRRRRRGNVVQRVFGRIRRFFSRRRDEPSLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISLPIGQRLLGSKRKMSLNPIAKQIPQVVEACCSFIEKYGLSTVGIFTLEYSEERVRKLREEFDQGLDVVLDDTRNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVLGNRMTSTNLALVFGSALLKRGQSAKRESRKTRLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRRIQSARIKMEEDALLSDPVENSAEVRAAVLAQSKPFDEDSSEEPAVPPGTARSHDDEEGAGNPPIPEQDRPLLRVPRAKEAQTGIGYFFP", "length": 550, "header": "tr|K7GSS8-1|K7GSS8_PIG Computationally mapped isoform of Rho GTPase-activating protein 36 OS=Sus scrofa OX=9823 GN=ARHGAP36 PE=4 SV=2 CANONICAL=A0A5G2QJG9-1" }, "locus": { "chromosome": "X", "start_pos": 107536686, "end_pos": 107529588, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035053.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035053.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030967.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030967.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511614", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511614", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1W2Q6M1-1", "protein_name": "Rho GTPase activating protein 36", "gene_name": "Arhgap36", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPCPLSDKLEVSGDQDSQCWVQGAAQGVVTGGYLEQSLRGDCTEEVSCEAAGHSARVMAWMLDCLFASAFEPRPRRVCVLGGAPGQNPDRSRMDMVSIHSLSELERLKLQETAYHELVARHFLSEFKPDRVQPTDRPNTLQKWFQMLRGQDRAASLKTFGIRLEEVLVNELTRRKQRELTDNMQVEDINGSTGRRRRGNVVQRMFGRMRRFFSRRRNEPTLPREFTRRGRRGAISVDSVAELENGALLLQILQLSQLSLPIGQRLLGSKRKMSLNPIAQQIPHIVETCCKFIEKHGLSSVGIFTIEYSLRRVIELRELFDKGMDIVLDDSVNVNDVAELLKEFFREMKDSLLPDELYMSFLLTATLKPQDQVSALQLLVYLMPPCHSDTLERLLKALHKVTENCEDSIGLDGQLVPGNRMTSTNLALVFGTSLLKKGKLAKRESRKTKLGIDHYVASVNVVRAMIDNWDILFQVPPHIQKQVAKRVWKSSPEALDFIRRRNLRKIQSARIKMEEDALLSDPVDNSAEAQAAILAQSQPFDEDPEGAPDVNFGDGMNYDFEDDSDFEDEDHPDLAEVPYLDVIPNNEDTDSDADEMPGSSEEPAVPAGTARSRDKDEGAGNPPNAERPLPRVPREKEGKSGTGFFP", "length": 646 }, "evidence": [ { "id": "A0A5G2QJG9", "url": "https://omabrowser.org/oma/group/A0A5G2QJG9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AB32TYH8-1", "protein_name": "Rho GTPase-activating protein 36 isoform X1", "gene_name": "arhgap36", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLFYMGSDKTSSVVMQPEDPVRQDMQFYYVGDHTWATMLGQSVRLQPVAIQSLSELERARLQEVALYHLERRDLDFKISIPREIRKRRKSLRRKFDSFSKEKKDRESAPKAFSIPLSQVIANDLAYKQRQDALKESRRDCLDLEASVLHFRAEKWQQNGNRPLGKTVLSPGAASSPVLELHSKPPSSAFMDNTSRTHRRGGMSVDSISDMVESQSRLLEALQLSHPNELEMKKAAGRTQAKLSLNPIYRQVPRVVERCCNHIQTYGLQTLGIFRVGSSKKRVRQLREDFDNGIDVVLDEEHSVHDVAALLKEFLRDMPDPLLPRELYRAFLHANLLRGADQLSYLQQLLYLLPPCNCDTLLRLLTLLHTVQENANSSTGPNKQEISGNKMTAANLAVIFGPNLLQKERGSERELSPQALGIEDSTAVISVTLMLIQNHQHLFMVSAELQQEVLMSLIQTDPDVIDYLLRRKLSSSSSLTVEPDSGGRRDTQSSLDSMGQSSDDLSSREPLCPLYPEHSAIGSLSSEVLLNVLHLNTNRKRSSEVPPKSIVKMRQFHSHHNLLSLTQSSSNAPSDERELQEQRQASSRHTCPEERLHFTLSRKDSGSQPQSPREKGIWVRQNSNASSTTSDDSKTPSNFWDFFTGKVSGSETIIPVVRRSPSLQNFFNDHSQSEKR", "length": 676 }, "evidence": [ { "id": "A0A5G2QJG9", "url": "https://omabrowser.org/oma/group/A0A5G2QJG9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A7MB27-1", "protein_name": "Rho GTPase-activating protein 36", "gene_name": "ARHGAP36", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPLLLLSALIFLVNVLGGAPGHNPNRRAKMISIHSLSELERLKLQEAAYHELVARQFLSEFKPERALPTDRSNTFEKWFLILRGQERAVSLKTFGIRLEEVLVNELTRRKQVELRATMQMQEAAGPATSGRRRGNAVQRMFGRIRRIFSGRRDEPFLPREFTRRGRRGAVSADSLAELEGGALLLQTLQLSRISFPIGQRLLGSKRKMSLNPIAKQIPHVVEACCSFIEKHGLSTVGIFTLEYSEKRVRKLREEFDQGLDVVLDDSQNVHDVAALLKEFFRDMKDSLLPDDLYMSFLQTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKVLHKVAENCEDSIGIDGQLVSGNRMTSTNLALVFGSALLKKGASAKRESRKTRLGIDHYVASVSVVRAMIDNWDVLFQVPPHIQKQVAKRVWKSSPEALDFIRRRNLRKIQSERIKMEEDALLSDPVETSAEARAAILGQSKPFDEGSSEEPAVPPGTARSHDDEEGAGNPLILEQDRPLLRVPREKEAKTGIGYFFP", "length": 530 }, "evidence": [ { "id": "A0A5G2QJG9", "url": "https://omabrowser.org/oma/group/A0A5G2QJG9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B1AUC7-1", "protein_name": "Rho GTPase-activating protein 36", "gene_name": "Arhgap36", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAWMLDCLFASAFEPRPRRVSVLGGAPGQNSDRSMDMVSIHSLSELERLKLQETAYHELVARHFLSEFKPDRALPTDRPNTLEKWFLMLRGQDRAASLKTFGIRLEEVLVNELTRRKQRELTPTMQVEDINGSTGRRRRGNVVQRMLGRMRRFFSRRRNEPTLPREFTRRGRRGAVSADSADELENGALLLQILQLSQLSSPIGQRLLGSKRKMSLNPIAQQIPQIVETCCKFIEKHGLSSVGIFTIEYSLRRVLELRELFDKGLDIVLDDSVNVHDVAELLKEFFREMKDPLLPDDLYMSFLLTATLKPKDQVSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGVDGQLVPGNRMTSTNLALVFGTALLKKGKLANKESRKTKLGIDHYVASVNVVRAMIDNWDILFQVPPHIQKEVAKRVWKSSPEALDFIRRRNLRKIQSARIKMEEDALLSDPVENSAEAQAAILAQSQPFDEDPEGAPDVHEVLNDNLNYDFEDESDFEDQDHLDLAEVPYLDVIPNNEDTDSDADVIPGPSEEPAVPASTAGSPDKEEGAAGNPPNADRPLPRVPQGKKGKFATRFFP", "length": 590 }, "evidence": [ { "id": "A0A5G2QJG9", "url": "https://omabrowser.org/oma/group/A0A5G2QJG9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZRI8-1", "protein_name": "Rho GTPase-activating protein 36", "gene_name": "ARHGAP36", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGCIPFLKAARALCPRIMPPLLLLSAFIFLVSVLGGAPGHNPDRRTKMVSIHSLSELERLKLQETAYHELVARHFLSEFKPDRALPIDRPNTLDKWFLILRGQQRAVSHKTFGISLEEVLVNEFTRRKHLELTATMQVEEATGQAAGRRRGNVVRRVFGRIRRFFSRRRNEPTLPREFTRRGRRGAVSVDSLAELEDGALLLQTLQLSKISFPIGQRLLGSKRKMSLNPIAKQIPQVVEACCQFIEKHGLSAVGIFTLEYSVQRVRQLREEFDQGLDVVLDDNQNVHDVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLSALQLLVYLMPPCHSDTLERLLKALHKITENCEDSIGIDGQLVPGNRMTSTNLALVFGSALLKKGKFGKRESRKTKLGIDHYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRKIQSARIKMEEDALLSDPVETSAEARAAVLAQSKPSDEGSSEEPAVPSGTARSHDDEEGAGNPPIPEQDRPLLRVPREKEAKTGVSYFFP", "length": 547 }, "evidence": [ { "id": "A0A5G2QJG9", "url": "https://omabrowser.org/oma/group/A0A5G2QJG9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" }, { "name": "positive regulation of intracellular signal transduction", "id": "GO:1902533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902533", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 946, "end_pos": 948, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1018, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG9" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 181, "end_pos": 381, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 946, "end_pos": 948 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJH6-1", "uniprot_ac": "A0A5G2QJH6", "uniprot_id": "A0A5G2QJH6_PIG", "mass": { "chemical_mass": 85435.0, "monoisotopic_mass": 85435.0 }, "refseq": {}, "gene_names": [ { "name": "RBM28", "type": "recommended", "evidence": [ { "id": "A0A5G2QJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ] } ], "protein_names": [ { "name": "RNA-binding protein 28", "type": "recommended", "evidence": [ { "id": "A0A5G2QJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 28", "type": "synonym", "evidence": [ { "id": "A0A5G2QJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Nucleolar component of the spliceosomal ribonucleoprotein complexes.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6#function" }, { "database": "UniProtKB", "id": "ARBA00053567", "url": "https://www.uniprot.org/uniprotkb/ARBA00053567#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6", "locus": { "chromosome": "18", "start_pos": 20072938, "end_pos": 20034334, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031847", "url": "https://www.ensembl.org/id/ENSSSCG00000031847" } ] } } ], "crossref": [ { "id": "A0A5G2QJH6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJH6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031847", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031847", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12413", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12413", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12414", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12414", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12415", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12415", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12416", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12416", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48039:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48039:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A0L7", "url": "https://www.uniprot.org/uniprotkb/A0A287A0L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0L7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQKALKEITTFEGRKINVIVAKKKLRNKSKEKGKNENSESPKKQPKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALRSMNMKEIKGRTVAVDWAVAKDKYKNTQPASAPGEEKRPGSENQELGQENGREEGDMEEKEGEESDDDSEEEEDDEEEETKGPKVTKPVQIQKRAVKRAAPAESSEEELSDDDSDLEEGDSFDDGEELAQSDTSTEEQEEEDIQGSKKKKKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSSTRGEKGVRIKECRVMRDLKGAHGKVKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPIVEFSLEDRRKLKIKEMRMQRSLQKVKSKSATGEPQQEPPEMGKKQQQKAAQNHMQEQSKAPVEQKGKVGSVSWTGFQTKAEVEHVELSDGKKRRKVLALPSHRGPKIRLRDKGKMKSLPPKKPKPQINHWKQEKQKLSSKQVPRKKAQGNKTEIRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS", "length": 758, "header": "tr|A0A5G2QJH6-1|A0A5G2QJH6_PIG Isoform 1 of RNA-binding protein 28 OS=Sus scrofa OX=9823 GN=RBM28 PE=4 SV=1 CANONICAL=A0A5G2QJH6-1" }, "isoforms": [ { "isoform_ac": "A0A287A0L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0L7/entry", "sequence": { "sequence": "MLEDVQKALKEITTFEGRKINVIVAKKKLRNKSKEKGKNENSESPKKQPKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALRSMNMKEIKGRTVAVDWAVAKDKYKNTQPASAPGEEKRPGSENQELGQENGREEGDMEEKEGEESDDDSEEEEDDEEEETKGPKVTKPVQIQKRAVKRAAPAESSEEELSDDDSDLEEGDSFDDGEELAQSDTSTEEQEEEGSKKKKKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSSTRGEKGVRIKECRVMRDLKGAHGKVKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPIVEFSLEDRRKLKIKEMRMQRSLQKVKSKSATGEPQQEPPEMGKKQQQKAAQNHMQEQSKAPVEQKGKVGSVSWTGFQTKAEVEHVELSDGKKRRKVLALPSHRGPKIRLRDKGKMKSLPPKKPKPQINHWKQEKQKLSSKQVPRKKAQGNKTEIRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS", "length": 702, "header": "tr|A0A287A0L7-1|A0A287A0L7_PIG Computationally mapped isoform of RNA binding motif protein 28 OS=Sus scrofa OX=9823 GN=RBM28 PE=4 SV=2 CANONICAL=A0A5G2QJH6-1" }, "locus": { "chromosome": "18", "start_pos": 20068763, "end_pos": 20038992, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038456.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038456.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037475.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037475.2" } ] } }, { "isoform_ac": "A0A5G2QJH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6/entry", "sequence": { "sequence": "MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQKALKEITTFEGRKINVIVAKKKLRNKSKEKGKNENSESPKKQPKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFAPFGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALRSMNMKEIKGRTVAVDWAVAKDKYKNTQPASAPGEEKRPGSENQELGQENGREEGDMEEKEGEESDDDSEEEEDDEEEETKGPKVTKPVQIQKRAVKRAAPAESSEEELSDDDSDLEEGDSFDDGEELAQSDTSTEEQEEEDIQGSKKKKKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSSTRGEKGVRIKECRVMRDLKGAHGKVKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPIVEFSLEDRRKLKIKEMRMQRSLQKVKSKSATGEPQQEPPEMGKKQQQKAAQNHMQEQSKAPVEQKGKVGSVSWTGFQTKAEVEHVELSDGKKRRKVLALPSHRGPKIRLRDKGKMKSLPPKKPKPQINHWKQEKQKLSSKQVPRKKAQGNKTEIRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS", "length": 758, "header": "tr|A0A5G2QJH6-1|A0A5G2QJH6_PIG Isoform 1 of RNA-binding protein 28 OS=Sus scrofa OX=9823 GN=RBM28 PE=4 SV=1 CANONICAL=A0A5G2QJH6-1" }, "locus": { "chromosome": "18", "start_pos": 20068763, "end_pos": 20034441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081974.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081974.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064627.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064627.1" } ] } }, { "isoform_ac": "A0A5G2RK16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK16/entry", "sequence": { "sequence": "MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKNTQPASAPGEEKRPGSENQELGQENGREEGDMEEKEGEESDDDSEEEEDDEEEETKGPKVTKPVQIQKRAVKRAAPAESSEEELSDDDSDLEEGDSFDDGEELAQSDTSTEEQEEEDIQGSKKKKKKRKLPSDVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSSTRGEKGVRIKECRVMRDLKGAHGKVKGQSLGYAFAEFQEHEHALAALRHINNNPEIFGPQKRPIVEFSLEDRRKLKIKEMRMQRSLQKVKSKSATGEPQQEPPEMGKKQQQKAAQNHMQEQSKAPVEQKGKVGSVSWTGFQTKAEVEHVELSDGKKRRKVLALPSHRGPKIRLRDKGKMKSLPPKKPKPQINHWKQEKQKLSSKQVPRKKAQGNKTEIRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS", "length": 617, "header": "tr|A0A5G2RK16-1|A0A5G2RK16_PIG Computationally mapped isoform of RNA binding motif protein 28 OS=Sus scrofa OX=9823 GN=RBM28 PE=4 SV=1 CANONICAL=A0A5G2QJH6-1" }, "locus": { "chromosome": "18", "start_pos": 20068763, "end_pos": 20034441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075121.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075121.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072345.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072345.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 758, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJH6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH6" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 80, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 723, "end_pos": 725 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJJ8-1", "uniprot_ac": "A0A5G2QJJ8", "uniprot_id": "A0A5G2QJJ8_PIG", "mass": { "chemical_mass": 144053.0, "monoisotopic_mass": 144053.0 }, "refseq": {}, "gene_names": [ { "name": "CACHD1", "type": "recommended", "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ] }, { "name": "UBE2U", "type": "recommended", "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ] }, { "name": "CACHD1", "type": "synonym", "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ] } ], "protein_names": [ { "name": "VWFA and cache domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the covalent attachment of ubiquitin to other proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1S816", "url": "https://www.uniprot.org/uniprotkb/F1S816#function" }, { "database": "UniProtKB", "id": "ARBA00053619", "url": "https://www.uniprot.org/uniprotkb/ARBA00053619#function" } ] }, { "annotation": "May regulate voltage-dependent calcium channels.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8#function" }, { "database": "UniProtKB", "id": "ARBA00053598", "url": "https://www.uniprot.org/uniprotkb/ARBA00053598#function" }, { "database": "UniProtKB", "id": "F1SNS3", "url": "https://www.uniprot.org/uniprotkb/F1SNS3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CACHD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8", "locus": { "chromosome": "6", "start_pos": 147775073, "end_pos": 148305330, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004829", "url": "https://www.ensembl.org/id/ENSSSCG00000004829" } ] } } ], "crossref": [ { "id": "A0A5G2QJJ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJJ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003810", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003810", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000004829", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004829", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23806", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23806", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S816", "url": "https://www.uniprot.org/uniprotkb/F1S816", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S816-1", "url": "https://www.uniprot.org/uniprotkb/F1S816-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNS3", "url": "https://www.uniprot.org/uniprotkb/F1SNS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNS3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSRAYILLQRDFQELKRNNYKGINAFPISEDLLEWEVDIKGLQNTIWQGSFFQLTISFTSEYNFVPPVVRRGGDSRLRNMQRIFNSFVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTAPLTAIQDCCTIPPSMMEFDGNFNTNVSRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRTCSLDQCYKTFLSPATSETKRKMSSFVSSVKSLDSPTQHAVGFQKAFQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVIDRTALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWNPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPSLQDALHQCVNSQCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYCAPQKECFGGIVGAKSPYVDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCVMVLVLAVYAYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVIERHAHSPERRRRYWRSGTESDHGYSTMSPQEDSENPPCTNDPLSAGVDVGNHDEDLELDTPPQTAALLSHKFHHYRLHHPTLHHSHHLQAAVTVHTVDAEC", "length": 1283, "header": "tr|A0A5G2QJJ8-1|A0A5G2QJJ8_PIG Isoform 1 of VWFA and cache domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CACHD1 PE=3 SV=2 CANONICAL=A0A5G2QJJ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8/entry", "sequence": { "sequence": "MYSRAYILLQRDFQELKRNNYKGINAFPISEDLLEWEVDIKGLQNTIWQGSFFQLTISFTSEYNFVPPVVRRGGDSRLRNMQRIFNSFVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTAPLTAIQDCCTIPPSMMEFDGNFNTNVSRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRTCSLDQCYKTFLSPATSETKRKMSSFVSSVKSLDSPTQHAVGFQKAFQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVIDRTALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWNPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPSLQDALHQCVNSQCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYCAPQKECFGGIVGAKSPYVDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCVMVLVLAVYAYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVIERHAHSPERRRRYWRSGTESDHGYSTMSPQEDSENPPCTNDPLSAGVDVGNHDEDLELDTPPQTAALLSHKFHHYRLHHPTLHHSHHLQAAVTVHTVDAEC", "length": 1283, "header": "tr|A0A5G2QJJ8-1|A0A5G2QJJ8_PIG Isoform 1 of VWFA and cache domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CACHD1 PE=3 SV=2 CANONICAL=A0A5G2QJJ8-1" }, "locus": { "chromosome": "6", "start_pos": 148304926, "end_pos": 147776434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080925.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080925.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064117.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064117.2" } ] } }, { "isoform_ac": "F1S816-1", "url": "https://www.uniprot.org/uniprotkb/F1S816/entry", "sequence": { "sequence": "MYSRAYILLQRDFQELKRNNYKGINAFPISEDLLEWEVDIKGLQNTIWQGSFFQLTISFTSEYNFVPPVVRFRTIPFHPNVDPYTGRPCIDFLDNPRKWNRNYTLSSILLTLQVMLSNPVLENPVNLEAAQILMKDETLYRLIILRLSRQALKLNNDSSESHKEPDKLIRSIKSVSFNDYFKTWSEIATSKATECYRTPLLDDPDFIGEYYKWKKNEIRHPKEWHLKYATALARIARENKRPHKSNYPTERSYLCTTPIPTSPDSQTETDTVTGADKTKERWKRKVLPDDVSVNEPWEEEVEDLVAWTNTLDTDALED", "length": 318, "header": "tr|F1S816-1|F1S816_PIG Computationally mapped isoform of Ubiquitin-conjugating enzyme E2 U OS=Sus scrofa OX=9823 GN=UBE2U PE=3 SV=5 CANONICAL=A0A5G2QJJ8-1" }, "locus": { "chromosome": "6", "start_pos": 148304926, "end_pos": 148233577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004217.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004217.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004122.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004122.5" } ] } }, { "isoform_ac": "F1SNS3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNS3/entry", "sequence": { "sequence": "MRRLAAEELGVVTMQRIFNSFVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTAPLTAIQDCCTIPPSMMEFDGNFNTNVSRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRTCSLDQCYKTFLSPATSETKRKMSSFVSSVKSLDSPTQHAVGFQKAFQLIRSTNNSTKFQANTDMVIIYLSAGITSKDSSEEDKKATLRVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVIDRTALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTVMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWNPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLVGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPSLQDALHQCVNSQCSQRMESGDCFGVLDCEWCMVDSDGKTHLDKSYCAPQKECFGGIVGAKSPYVDDMGAIGDEVVTLNMIKSAPVGPVAGGIMGCVMVLVLAVYAYRHQIHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVIERHAHSPERRRRYWRSGTESDHGYSTMSPQEDSENPPCTNDPLSAGVDVGNHDEDLELDTPPQTAALLSHKFHHYRLHHPTLHHSHHLQAAVTVHTVDAEC", "length": 1216, "header": "tr|F1SNS3-1|F1SNS3_PIG Computationally mapped isoform of VWFA and cache domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CACHD1 PE=3 SV=4 CANONICAL=A0A5G2QJJ8-1" }, "locus": { "chromosome": "6", "start_pos": 148010101, "end_pos": 147776434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005331.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005331.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005201.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005201.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" }, { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "voltage-gated calcium channel complex", "id": "GO:0005891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005891", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "calcium ion transport", "id": "GO:0006816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006816", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 915, "end_pos": 917, "annotation": "n_glycosylation_sequon" }, { "start_pos": 950, "end_pos": 952, "annotation": "n_glycosylation_sequon" }, { "start_pos": 995, "end_pos": 997, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJJ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1283, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJJ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJJ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 186, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ8" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 244, "end_pos": 459, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 345, "end_pos": 347 }, { "start_pos": 389, "end_pos": 391 }, { "start_pos": 584, "end_pos": 586 }, { "start_pos": 603, "end_pos": 605 }, { "start_pos": 915, "end_pos": 917 }, { "start_pos": 950, "end_pos": 952 }, { "start_pos": 995, "end_pos": 997 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJM6-1", "uniprot_ac": "A0A5G2QJM6", "uniprot_id": "A0A5G2QJM6_PIG", "mass": { "chemical_mass": 31656.0, "monoisotopic_mass": 31656.0 }, "refseq": {}, "gene_names": [ { "name": "EMC8", "type": "recommended", "evidence": [ { "id": "A0A5G2QJM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ] } ], "protein_names": [ { "name": "ER membrane protein complex subunit 8", "type": "synonym", "evidence": [ { "id": "A0A5G2QJM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EMC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJM6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045808", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045808", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08060", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08060", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005366", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005366", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12941", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12941", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12941:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12941:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1T7Z3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T7Z3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T7Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T7Z3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2S6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDARWTTLSLRWTAWYLPSMCTNTMRTSGAAETHTMITVKTGRRPSASPRRSWTAGPTRRWWTLITTWMTFGMTGRTPRSTKPCCTCAREGVRGPGSGRFHCPEEEKLFLSVDKRARGLGGKLARFRSGPCLGGGWKVLSVVCLTQSLWNRARRPVGPSLWRPSQCTLRSFSKSKPLLLVQDCSH", "length": 284, "header": "tr|A0A5G2QJM6-1|A0A5G2QJM6_PIG Isoform 1 of ER membrane protein complex subunit 8 OS=Sus scrofa OX=9823 GN=EMC8 PE=4 SV=1 CANONICAL=A0A5G2QJM6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T7Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T7Z3/entry", "sequence": { "sequence": "MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIM", "length": 126, "header": "tr|A0A4X1T7Z3-1|A0A4X1T7Z3_PIG Computationally mapped isoform of ER membrane protein complex subunit 8 OS=Sus scrofa OX=9823 GN=EMC8 PE=3 SV=1 CANONICAL=A0A5G2QJM6-1" }, "locus": { "chromosome": "6", "start_pos": 3149776, "end_pos": 3137937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090442.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090442.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072220.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072220.1" } ] } }, { "isoform_ac": "A0A5G2QJM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6/entry", "sequence": { "sequence": "MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDARWTTLSLRWTAWYLPSMCTNTMRTSGAAETHTMITVKTGRRPSASPRRSWTAGPTRRWWTLITTWMTFGMTGRTPRSTKPCCTCAREGVRGPGSGRFHCPEEEKLFLSVDKRARGLGGKLARFRSGPCLGGGWKVLSVVCLTQSLWNRARRPVGPSLWRPSQCTLRSFSKSKPLLLVQDCSH", "length": 284, "header": "tr|A0A5G2QJM6-1|A0A5G2QJM6_PIG Isoform 1 of ER membrane protein complex subunit 8 OS=Sus scrofa OX=9823 GN=EMC8 PE=4 SV=1 CANONICAL=A0A5G2QJM6-1" }, "locus": { "chromosome": "6", "start_pos": 3152187, "end_pos": 3137937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090576.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090576.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065001.1" } ] } }, { "isoform_ac": "A0A5G2R2S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2S6/entry", "sequence": { "sequence": "MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVVPTIHVYEHHENKWRCRDPHYDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDEAGRSCPLSASRRASGTGPVGPSARPCGVLPSVRYAHSPNQSHSCLSKIAPIKQF", "length": 246, "header": "tr|A0A5G2R2S6-1|A0A5G2R2S6_PIG Computationally mapped isoform of ER membrane protein complex subunit 8 OS=Sus scrofa OX=9823 GN=EMC8 PE=3 SV=2 CANONICAL=A0A5G2QJM6-1" }, "locus": { "chromosome": "6", "start_pos": 3152197, "end_pos": 3137937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090773.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090773.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070642.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070642.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "EMC complex", "id": "GO:0072546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072546", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tail-anchored membrane protein insertion into ER membrane", "id": "GO:0071816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071816", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ], "pmid": "" }, { "name": "protein insertion into ER membrane by stop-transfer membrane-anchor sequence", "id": "GO:0045050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045050", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJM6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJM6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJN4-1", "uniprot_ac": "A0A5G2QJN4", "uniprot_id": "A0A5G2QJN4_PIG", "mass": { "chemical_mass": 7238.0, "monoisotopic_mass": 7238.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJN4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJN4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047533", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047533", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ERASSWILVGSSPVVEQLTDLKEEKIQLDTSGAAAKANANAEETDEEGKQDRAILTQQADQQQHCR", "length": 66, "header": "tr|A0A5G2QJN4-1|A0A5G2QJN4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJN4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4/entry", "sequence": { "sequence": "ERASSWILVGSSPVVEQLTDLKEEKIQLDTSGAAAKANANAEETDEEGKQDRAILTQQADQQQHCR", "length": 66, "header": "tr|A0A5G2QJN4-1|A0A5G2QJN4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJN4-1" }, "locus": { "chromosome": "5", "start_pos": 95047039, "end_pos": 95045956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067317.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067317.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064162.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064162.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJN4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 66, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJN4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJN4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJP6-1", "uniprot_ac": "A0A5G2QJP6", "uniprot_id": "A0A5G2QJP6_PIG", "mass": { "chemical_mass": 17819.0, "monoisotopic_mass": 17819.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048880", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048880", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLLQVLSRYMPQSGISGSYGSSIFSFLRYCHTVFHSGCTNLHSHQQHRRVPFSPYPLQHLLFVDLLMMVILTGVRWYLIVVLSCISLIISDVEHFFLCLFAIHISSLEKCLFRSFAHFSIGFLFCFVLAGFFGLFVCLFAVQLYKLFVYFRD", "length": 153, "header": "tr|A0A5G2QJP6-1|A0A5G2QJP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6/entry", "sequence": { "sequence": "MYLLQVLSRYMPQSGISGSYGSSIFSFLRYCHTVFHSGCTNLHSHQQHRRVPFSPYPLQHLLFVDLLMMVILTGVRWYLIVVLSCISLIISDVEHFFLCLFAIHISSLEKCLFRSFAHFSIGFLFCFVLAGFFGLFVCLFAVQLYKLFVYFRD", "length": 153, "header": "tr|A0A5G2QJP6-1|A0A5G2QJP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJP6-1" }, "locus": { "chromosome": "15", "start_pos": 74221048, "end_pos": 74220590, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073413.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073413.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064177.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064177.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 153, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJP6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJP9-1", "uniprot_ac": "A0A5G2QJP9", "uniprot_id": "A0A5G2QJP9_PIG", "mass": { "chemical_mass": 128818.0, "monoisotopic_mass": 128818.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044442", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044442", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14089", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14089", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14089:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14089:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFEKRLMETEQHWTLSASERYVMDSHMERDGMDSAAASGMHLMGEEKHQEKNRCETYMTDSDSEPCMMDSDSKRYGLVSASMKCLVDTKTFQLSTDTERHWMDSWSERRKMDLDSESLCMASNSVKYMMKAENCQRGSDLERFQMGLRSESERCWTDSEIQQLDFYRYWDHSRRYQCRSRFQGSSRRCHDDLQKHWDKFEEHHIDTDFEKHRVTSENKRYQNKFESERHHMEMERKQCLIQSENERLQMDDERGKYLINSDGEKEQNEAQRLGARRKDNRPQGFWRPIFLSPACGQGKETEEQHFVQQIDNRIISRIQLVRYPSDDKTVRFKEVAPTLSDKQNSRKKLKEKHSHNLFIDPNTFVDNKHHKNASHKISVCKSCHTGYRYQQIFQSSRSEMNPIHLISAEDYTSEVSTPVYHPTSLSSWSSVHPNTHRNNIYTLDTGAQACSKCFVGISNSSFHKCLMNTDDDSDPDCPLHLQISLDSKYSLSPKSIRHRKTSRDYPLSRSLDPKHPVGIRCPLHWKDSKYSLGSTSYLHYESCSALQNLMGSTITRTFPMNPQNNMDHRSTSGPDNVINTSSTSGLESRGKFNLTAKFENDTNLDDETKLTSTGNLKDKANVKDKPLVKDDTDHEDETDSEDEEDHKDETDPEDENIAKDKKDPKDRSDPDDTDPKDSNAENDAGTNNGSDASGDADPANGADSNCNDNSNNGTDSNSEPDSNNYNITNNDANIKYSTDSEEDKHTNISDNVSGLDNGVNQDCTADSDNGTNPNYTSGLQNGTGLDYTSGSSNGNNGPGLQNIRPIPRSPGSSNNGSGPSINGLDLNNKPYSNYNSRPSNATSHNAALSPDKDADSIHETKPISAAGHNYTAIPNCGSNLDYVPGFTHAVGSNFAVSPNYITRNSFAASISSTASTLNVIDTSNTTSCIGTISPTYTTGTSCASDTNHDPRFTHVIGSNFVINPTYDSINTHNVCNSTSTRNINNISEPELEINSSSSILNIVCGNDPIIFVGTNYISTPEKLTTHKFSNPSKLDRNYAVFDDHKFGACLNDYAGSMDSASLKHATDSKDVLDTEESGFLKDFSEVQNPIGIKDPASLNFHSNSNIPLPSFDIIVEAEPPDVVKFAIPSGAVNQFFKSTLTGSSTTLSEVA", "length": 1151, "header": "tr|A0A5G2QJP9-1|A0A5G2QJP9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJP9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9/entry", "sequence": { "sequence": "MEFEKRLMETEQHWTLSASERYVMDSHMERDGMDSAAASGMHLMGEEKHQEKNRCETYMTDSDSEPCMMDSDSKRYGLVSASMKCLVDTKTFQLSTDTERHWMDSWSERRKMDLDSESLCMASNSVKYMMKAENCQRGSDLERFQMGLRSESERCWTDSEIQQLDFYRYWDHSRRYQCRSRFQGSSRRCHDDLQKHWDKFEEHHIDTDFEKHRVTSENKRYQNKFESERHHMEMERKQCLIQSENERLQMDDERGKYLINSDGEKEQNEAQRLGARRKDNRPQGFWRPIFLSPACGQGKETEEQHFVQQIDNRIISRIQLVRYPSDDKTVRFKEVAPTLSDKQNSRKKLKEKHSHNLFIDPNTFVDNKHHKNASHKISVCKSCHTGYRYQQIFQSSRSEMNPIHLISAEDYTSEVSTPVYHPTSLSSWSSVHPNTHRNNIYTLDTGAQACSKCFVGISNSSFHKCLMNTDDDSDPDCPLHLQISLDSKYSLSPKSIRHRKTSRDYPLSRSLDPKHPVGIRCPLHWKDSKYSLGSTSYLHYESCSALQNLMGSTITRTFPMNPQNNMDHRSTSGPDNVINTSSTSGLESRGKFNLTAKFENDTNLDDETKLTSTGNLKDKANVKDKPLVKDDTDHEDETDSEDEEDHKDETDPEDENIAKDKKDPKDRSDPDDTDPKDSNAENDAGTNNGSDASGDADPANGADSNCNDNSNNGTDSNSEPDSNNYNITNNDANIKYSTDSEEDKHTNISDNVSGLDNGVNQDCTADSDNGTNPNYTSGLQNGTGLDYTSGSSNGNNGPGLQNIRPIPRSPGSSNNGSGPSINGLDLNNKPYSNYNSRPSNATSHNAALSPDKDADSIHETKPISAAGHNYTAIPNCGSNLDYVPGFTHAVGSNFAVSPNYITRNSFAASISSTASTLNVIDTSNTTSCIGTISPTYTTGTSCASDTNHDPRFTHVIGSNFVINPTYDSINTHNVCNSTSTRNINNISEPELEINSSSSILNIVCGNDPIIFVGTNYISTPEKLTTHKFSNPSKLDRNYAVFDDHKFGACLNDYAGSMDSASLKHATDSKDVLDTEESGFLKDFSEVQNPIGIKDPASLNFHSNSNIPLPSFDIIVEAEPPDVVKFAIPSGAVNQFFKSTLTGSSTTLSEVA", "length": 1151, "header": "tr|A0A5G2QJP9-1|A0A5G2QJP9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJP9-1" }, "locus": { "chromosome": "X", "start_pos": 68195406, "end_pos": 68170951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086086.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086086.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062277.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062277.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pre-mRNA binding", "id": "GO:0036002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036002", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "pmid": "" }, { "name": "U6 snRNA binding", "id": "GO:0017070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017070", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "U2-type catalytic step 1 spliceosome", "id": "GO:0071006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071006", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "pmid": "" }, { "name": "U2-type catalytic step 2 spliceosome", "id": "GO:0071007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071007", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "pmid": "" }, { "name": "Prp19 complex", "id": "GO:0000974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000974", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" }, { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" }, { "start_pos": 600, "end_pos": 602, "annotation": "n_glycosylation_sequon" }, { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" }, { "start_pos": 751, "end_pos": 753, "annotation": "n_glycosylation_sequon" }, { "start_pos": 769, "end_pos": 771, "annotation": "n_glycosylation_sequon" }, { "start_pos": 774, "end_pos": 776, "annotation": "n_glycosylation_sequon" }, { "start_pos": 781, "end_pos": 783, "annotation": "n_glycosylation_sequon" }, { "start_pos": 815, "end_pos": 817, "annotation": "n_glycosylation_sequon" }, { "start_pos": 840, "end_pos": 842, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" }, { "start_pos": 924, "end_pos": 926, "annotation": "n_glycosylation_sequon" }, { "start_pos": 976, "end_pos": 978, "annotation": "n_glycosylation_sequon" }, { "start_pos": 985, "end_pos": 987, "annotation": "n_glycosylation_sequon" }, { "start_pos": 994, "end_pos": 996, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJP9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1151, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJP9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJP9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 372, "end_pos": 374 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 579, "end_pos": 581 }, { "start_pos": 593, "end_pos": 595 }, { "start_pos": 600, "end_pos": 602 }, { "start_pos": 688, "end_pos": 690 }, { "start_pos": 712, "end_pos": 714 }, { "start_pos": 726, "end_pos": 728 }, { "start_pos": 747, "end_pos": 749 }, { "start_pos": 751, "end_pos": 753 }, { "start_pos": 769, "end_pos": 771 }, { "start_pos": 774, "end_pos": 776 }, { "start_pos": 781, "end_pos": 783 }, { "start_pos": 815, "end_pos": 817 }, { "start_pos": 840, "end_pos": 842 }, { "start_pos": 869, "end_pos": 871 }, { "start_pos": 924, "end_pos": 926 }, { "start_pos": 976, "end_pos": 978 }, { "start_pos": 985, "end_pos": 987 }, { "start_pos": 994, "end_pos": 996 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJQ4-1", "uniprot_ac": "A0A5G2QJQ4", "uniprot_id": "A0A5G2QJQ4_PIG", "mass": { "chemical_mass": 87116.0, "monoisotopic_mass": 87116.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045959", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045959", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTCSPPFLLELPARVPSPLGKCHTDLPLLPGSPLPSGKGFNPFLTLELPLAPRKGYSDHPPRPSPNSGKRCSDPSPPPLSLPRRIPSPPPPPTSPPPQPPLRPGRCSFEPCSPLLGRPYCREPNLPGSSPPSPCLDQFRLVGSPPARPRSPYCSWISPPRTPRPCPRGPYPDQHTYLCYCGGHPAALVTNPVTSPPLTRMPLETGPMISSSINPGAQGTYPIISPPLTHRPLGAGLAVTPPLAHRPMETRPIISPPLSHRVLESGPMTSTLLSSWSSRRSYNGPPLSPLDPPPGKSYCGSPLSSQAGASGCPSSSQEGSYHYSHLPPEAHIPAPGSPYCTIHLPPGSTGSPCSPQAQVSRKPCFESVYSWETGGSSYLCVTPGTTVSGPPCPQEPPLPLSTHCPYSAFFPSPAGNQFISPPQSPPCRSYKEPPLPTPVCPPTKSPKSSELKQPCAPHRCHSLVTQHTSPDQPRSPKVSTSPPPSRPSGPSGPSCMVTSITTCSNPCPRELPQGTTLPTVVPRTPRTVIPTSLPLRLPCDPVFPNNYVQTSPRPPIGSPCNTHVYSMVSPTPDPCLLPGSLNQSTGPLQCHNQPMVPPCGTYSAPRGPPQPHRQPVAPPCSTHIYSFIPLRTPFDPQNLPIALRARGPLDTMPCGLHVYSVASRDSRKESLQTPYSCPLSPSKSSSCSTNVSCSSTVVISECQSSDSQSKNSHQSTSWSQSESAHDPSPNWNSQRKGFHLSRSQSGSSNTHQSVNQDKTESLQLGEYQNQSEGTQYSKSQGPIKSASVSSPHPTFQESGNFPRVILSPVILSIVLSVTA", "length": 818, "header": "tr|A0A5G2QJQ4-1|A0A5G2QJQ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJQ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4/entry", "sequence": { "sequence": "MTCSPPFLLELPARVPSPLGKCHTDLPLLPGSPLPSGKGFNPFLTLELPLAPRKGYSDHPPRPSPNSGKRCSDPSPPPLSLPRRIPSPPPPPTSPPPQPPLRPGRCSFEPCSPLLGRPYCREPNLPGSSPPSPCLDQFRLVGSPPARPRSPYCSWISPPRTPRPCPRGPYPDQHTYLCYCGGHPAALVTNPVTSPPLTRMPLETGPMISSSINPGAQGTYPIISPPLTHRPLGAGLAVTPPLAHRPMETRPIISPPLSHRVLESGPMTSTLLSSWSSRRSYNGPPLSPLDPPPGKSYCGSPLSSQAGASGCPSSSQEGSYHYSHLPPEAHIPAPGSPYCTIHLPPGSTGSPCSPQAQVSRKPCFESVYSWETGGSSYLCVTPGTTVSGPPCPQEPPLPLSTHCPYSAFFPSPAGNQFISPPQSPPCRSYKEPPLPTPVCPPTKSPKSSELKQPCAPHRCHSLVTQHTSPDQPRSPKVSTSPPPSRPSGPSGPSCMVTSITTCSNPCPRELPQGTTLPTVVPRTPRTVIPTSLPLRLPCDPVFPNNYVQTSPRPPIGSPCNTHVYSMVSPTPDPCLLPGSLNQSTGPLQCHNQPMVPPCGTYSAPRGPPQPHRQPVAPPCSTHIYSFIPLRTPFDPQNLPIALRARGPLDTMPCGLHVYSVASRDSRKESLQTPYSCPLSPSKSSSCSTNVSCSSTVVISECQSSDSQSKNSHQSTSWSQSESAHDPSPNWNSQRKGFHLSRSQSGSSNTHQSVNQDKTESLQLGEYQNQSEGTQYSKSQGPIKSASVSSPHPTFQESGNFPRVILSPVILSIVLSVTA", "length": 818, "header": "tr|A0A5G2QJQ4-1|A0A5G2QJQ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJQ4-1" }, "locus": { "chromosome": "6", "start_pos": 165118337, "end_pos": 165115297, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075050.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075050.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065026.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065026.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 239, "start_aa": "Thr", "end_pos": 239, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr239", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 381, "start_aa": "Thr", "end_pos": 381, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr381", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 436, "start_aa": "Thr", "end_pos": 436, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr436", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 570, "start_aa": "Thr", "end_pos": 570, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr570", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "tRNA (cytidine-5-)-methyltransferase activity", "id": "GO:0016428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016428", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA methylation", "id": "GO:0030488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030488", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 581, "end_pos": 583, "annotation": "n_glycosylation_sequon" }, { "start_pos": 689, "end_pos": 691, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJQ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 818, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJQ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJQ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 93, 239, 381, 436, 570 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 581, "end_pos": 583 }, { "start_pos": 689, "end_pos": 691 }, { "start_pos": 768, "end_pos": 770 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJQ7-1", "uniprot_ac": "A0A5G2QJQ7", "uniprot_id": "A0A5G2QJQ7_PIG", "mass": { "chemical_mass": 44571.0, "monoisotopic_mass": 44571.0 }, "refseq": {}, "gene_names": [ { "name": "KICS2", "type": "recommended", "evidence": [ { "id": "A0A5G2QJQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ] } ], "protein_names": [ { "name": "KICSTOR subunit 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QJQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "As part of the KICSTOR complex functions in the amino acid-sensing branch of the TORC1 signaling pathway. Recruits, in an amino acid-independent manner, the GATOR1 complex to the lysosomal membranes and allows its interaction with GATOR2 and the RAG GTPases. Functions upstream of the RAG GTPases and is required to negatively regulate mTORC1 signaling in absence of amino acids. In absence of the KICSTOR complex mTORC1 is constitutively localized to the lysosome and activated. The KICSTOR complex is also probably involved in the regulation of mTORC1 by glucose.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7#function" }, { "database": "UniProtKB", "id": "ARBA00054615", "url": "https://www.uniprot.org/uniprotkb/ARBA00054615#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KICS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7", "locus": { "chromosome": "5", "start_pos": 28653236, "end_pos": 28678859, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039258", "url": "https://www.ensembl.org/id/ENSSSCG00000039258" } ] } } ], "crossref": [ { "id": "A0A5G2QJQ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJQ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR018544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31581", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31581", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31581:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31581:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09404", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09404", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9639288", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGESIPLAAPVPVEQAVLETFFSHLGGQSFFSRKDSIRTIYTSLHNELKKVVTGRGALGGTAPHVEELLSHLSEQLCFFVQARMEIADFYEKMYTLSTQKFINAEELVGLLDTILKKYSSRFHHPILSPLESSFQLEVDVLSHLLKAQAQVSEWKFLPSLVNLHSAHTKLQTWGQIFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKNMLLAKFSFYFHEALSRQTTASEMKTLTAKANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIMTDRTSDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISFLSEISLALKNPKVFAGLKPGSKG", "length": 392, "header": "tr|A0A5G2QJQ7-1|A0A5G2QJQ7_PIG Isoform 1 of KICSTOR subunit 2 OS=Sus scrofa OX=9823 GN=KICS2 PE=3 SV=1 CANONICAL=A0A5G2QJQ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7/entry", "sequence": { "sequence": "MGESIPLAAPVPVEQAVLETFFSHLGGQSFFSRKDSIRTIYTSLHNELKKVVTGRGALGGTAPHVEELLSHLSEQLCFFVQARMEIADFYEKMYTLSTQKFINAEELVGLLDTILKKYSSRFHHPILSPLESSFQLEVDVLSHLLKAQAQVSEWKFLPSLVNLHSAHTKLQTWGQIFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLKNMLLAKFSFYFHEALSRQTTASEMKTLTAKANPDLFGKISSFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWPNVIMIMTDRTSDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISFLSEISLALKNPKVFAGLKPGSKG", "length": 392, "header": "tr|A0A5G2QJQ7-1|A0A5G2QJQ7_PIG Isoform 1 of KICSTOR subunit 2 OS=Sus scrofa OX=9823 GN=KICS2 PE=3 SV=1 CANONICAL=A0A5G2QJQ7-1" }, "locus": { "chromosome": "5", "start_pos": 28678804, "end_pos": 28659667, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067846.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067846.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064187.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064187.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9639288", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "resource": "Reactome", "description": "Amino acids regulate mTORC1" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "KICSTOR complex", "id": "GO:0140007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140007", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cellular response to glucose starvation", "id": "GO:0042149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042149", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" }, { "name": "cellular response to amino acid starvation", "id": "GO:0034198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" }, { "name": "negative regulation of TORC1 signaling", "id": "GO:1904262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904262", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" }, { "name": "protein localization to lysosome", "id": "GO:0061462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061462", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 259, "end_pos": 261 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJR4-1", "uniprot_ac": "A0A5G2QJR4", "uniprot_id": "A0A5G2QJR4_PIG", "mass": { "chemical_mass": 16430.0, "monoisotopic_mass": 16430.0 }, "refseq": {}, "gene_names": [ { "name": "SCOC", "type": "recommended", "evidence": [ { "id": "A0A5G2QJR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4" } ] } ], "protein_names": [ { "name": "Short coiled-coil protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QJR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Positive regulator of amino acid starvation-induced autophagy.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4#function" }, { "database": "UniProtKB", "id": "ARBA00002743", "url": "https://www.uniprot.org/uniprotkb/ARBA00002743#function" }, { "database": "UniProtKB", "id": "A0A5G2RED2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RED2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCOC", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4", "locus": { "chromosome": "8", "start_pos": 86679843, "end_pos": 86690676, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038550", "url": "https://www.ensembl.org/id/ENSSSCG00000038550" } ] } } ], "crossref": [ { "id": "A0A5G2QJR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038550", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038550", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21614:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21614:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10224", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10224", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RED2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RED2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RED2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RED2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRRDFLSGDWLTTGARRGGPPASCQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "length": 147, "header": "tr|A0A5G2QJR4-1|A0A5G2QJR4_PIG Isoform 1 of Short coiled-coil protein OS=Sus scrofa OX=9823 GN=SCOC PE=1 SV=2 CANONICAL=A0A5G2QJR4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4/entry", "sequence": { "sequence": "MRRRDFLSGDWLTTGARRGGPPASCQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "length": 147, "header": "tr|A0A5G2QJR4-1|A0A5G2QJR4_PIG Isoform 1 of Short coiled-coil protein OS=Sus scrofa OX=9823 GN=SCOC PE=1 SV=2 CANONICAL=A0A5G2QJR4-1" }, "locus": { "chromosome": "8", "start_pos": 86690676, "end_pos": 86682143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082393.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082393.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065036.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065036.2" } ] } }, { "isoform_ac": "A0A5G2RED2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RED2/entry", "sequence": { "sequence": "MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK", "length": 82, "header": "tr|A0A5G2RED2-1|A0A5G2RED2_PIG Computationally mapped isoform of Short coiled-coil protein OS=Sus scrofa OX=9823 GN=SCOC PE=1 SV=1 CANONICAL=A0A5G2QJR4-1" }, "locus": { "chromosome": "8", "start_pos": 86684092, "end_pos": 86682143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082668.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082668.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069212.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJR4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJR9-1", "uniprot_ac": "A0A5G2QJR9", "uniprot_id": "A0A5G2QJR9_PIG", "mass": { "chemical_mass": 34230.0, "monoisotopic_mass": 34230.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJR9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049674", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049674", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNQPQSNQQENSPKTVNNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRCQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPRLIIIKIAKVSDKERILQAAREKQNVTYKGTPIRLSADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISYKIEGEIKNFPNKQKLKATNKILKNTATQNPG", "length": 294, "header": "tr|A0A5G2QJR9-1|A0A5G2QJR9_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QJR9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9/entry", "sequence": { "sequence": "MKKLRNQPQSNQQENSPKTVNNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRCQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPRLIIIKIAKVSDKERILQAAREKQNVTYKGTPIRLSADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISYKIEGEIKNFPNKQKLKATNKILKNTATQNPG", "length": 294, "header": "tr|A0A5G2QJR9-1|A0A5G2QJR9_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QJR9-1" }, "locus": { "chromosome": "1", "start_pos": 191150931, "end_pos": 191150050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085286.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085286.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065041.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 294, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 279, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QJR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJR9" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJU4-1", "uniprot_ac": "A0A5G2QJU4", "uniprot_id": "A0A5G2QJU4_PIG", "mass": { "chemical_mass": 13683.0, "monoisotopic_mass": 13683.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJU4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044325", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044325", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QJU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCKLVQPLWRSVWRYLRKLYIELPYDPASHTWTYIWTKLSLKKTCTCMFTAAPFTIAKTWQQPKCPLTDNWIGIYTQWNTTQP", "length": 115, "header": "tr|A0A5G2QJU4-1|A0A5G2QJU4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJU4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4/entry", "sequence": { "sequence": "MRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCKLVQPLWRSVWRYLRKLYIELPYDPASHTWTYIWTKLSLKKTCTCMFTAAPFTIAKTWQQPKCPLTDNWIGIYTQWNTTQP", "length": 115, "header": "tr|A0A5G2QJU4-1|A0A5G2QJU4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJU4-1" }, "locus": { "chromosome": "1", "start_pos": 77200688, "end_pos": 77200344, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091377.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091377.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064232.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064232.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJU4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPW7-1", "uniprot_ac": "A0A5G2QPW7", "uniprot_id": "A0A5G2QPW7_PIG", "mass": { "chemical_mass": 67180.0, "monoisotopic_mass": 67180.0 }, "refseq": {}, "gene_names": [ { "name": "RANBP10", "type": "recommended", "evidence": [ { "id": "A0A5G2QPW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ] } ], "protein_names": [ { "name": "RAN binding protein 10", "type": "synonym", "evidence": [ { "id": "A0A5G2QPW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RANBP10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7", "locus": { "chromosome": "6", "start_pos": 28352003, "end_pos": 28428370, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021803", "url": "https://www.ensembl.org/id/ENSSSCG00000021803" } ] } } ], "crossref": [ { "id": "A0A5G2QPW7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021803", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021803", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12909", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12909", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12864", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12864", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10607", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10607", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8851805", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8851805", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QJV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCC3", "url": "https://www.uniprot.org/uniprotkb/I3LCC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCC3-1", "url": "https://www.uniprot.org/uniprotkb/I3LCC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAATADPGAGSPQVGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVSMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGGYTRDLGANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVVSTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSNQETSDSEMEMEAEHYPNGVLESMSTRIVNGAYKHEDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH", "length": 620, "header": "tr|A0A5G2QPW7-1|A0A5G2QPW7_PIG Isoform 1 of RAN binding protein 10 OS=Sus scrofa OX=9823 GN=RANBP10 PE=3 SV=2 CANONICAL=A0A5G2QPW7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV3/entry", "sequence": { "sequence": "MAAATADPGAGSPQVGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVSMNRLPGVAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVVSTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSNQETSNMWLKPKWRPYRATRTTSPWPAPTYTLLRSDSEMEMEAEHYPNGVLESMSTRIVNGAYKHEDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH", "length": 594, "header": "tr|A0A5G2QJV3-1|A0A5G2QPW7_PIG Computationally mapped isoform of RAN binding protein 10 OS=Sus scrofa OX=9823 GN=RANBP10 PE=3 SV=2 CANONICAL=A0A5G2QPW7-1" }, "locus": { "chromosome": "6", "start_pos": 28428347, "end_pos": 28355372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074556.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074556.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064243.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064243.2" } ] } }, { "isoform_ac": "A0A5G2QN61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN61/entry", "sequence": { "sequence": "MAAATADPGAGSPQVGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVSMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGVAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVVSTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSNQETSNMWLKPKWRPYRATRTTSPWPAPTYTLLRSDSEMEMEAEHYPNGVLESMSTRIVNGAYKHEDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH", "length": 650, "header": "tr|A0A5G2QN61-1|A0A5G2QN61_PIG Computationally mapped isoform of RAN binding protein 10 OS=Sus scrofa OX=9823 GN=RANBP10 PE=3 SV=2 CANONICAL=A0A5G2QPW7-1" }, "locus": { "chromosome": "6", "start_pos": 28428347, "end_pos": 28355372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085406.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085406.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066333.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066333.2" } ] } }, { "isoform_ac": "A0A5G2QPW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7/entry", "sequence": { "sequence": "MAAATADPGAGSPQVGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVSMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGGYTRDLGANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVVSTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSNQETSDSEMEMEAEHYPNGVLESMSTRIVNGAYKHEDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH", "length": 620, "header": "tr|A0A5G2QPW7-1|A0A5G2QPW7_PIG Isoform 1 of RAN binding protein 10 OS=Sus scrofa OX=9823 GN=RANBP10 PE=3 SV=2 CANONICAL=A0A5G2QPW7-1" }, "locus": { "chromosome": "6", "start_pos": 28428347, "end_pos": 28355372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081752.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081752.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066101.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066101.2" } ] } }, { "isoform_ac": "I3LCC3-1", "url": "https://www.uniprot.org/uniprotkb/I3LCC3/entry", "sequence": { "sequence": "MAAATADPGAGSPQVGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVSMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGVAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHMHNTGADSPSCSNGVVSTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSNQETSDTENVVSSKDIRLLRAPRVYAKGAFTGLDLPSARLDSDSEMEMEAEHYPNGVLESMSTRIVNGAYKHEDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLAHTEMLQDAFSLLAYSDPWSCPVGQQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSCSFARVDDYLH", "length": 657, "header": "tr|I3LCC3-1|I3LCC3_PIG Computationally mapped isoform of RAN binding protein 10 OS=Sus scrofa OX=9823 GN=RANBP10 PE=3 SV=4 CANONICAL=A0A5G2QPW7-1" }, "locus": { "chromosome": "6", "start_pos": 28428347, "end_pos": 28355372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027979.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027979.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021698.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021698.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 203, "start_aa": "Thr", "end_pos": 203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr203", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8851805", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8851805", "resource": "Reactome", "description": "MET activates RAS signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "GID complex", "id": "GO:0034657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034657", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "beta-tubulin binding", "id": "GO:0048487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048487", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 620, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPW7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 222, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QPW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW7" }, { "id": "PS50897", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50897" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CTLH", "eco_id": "ECO_0000259", "start_pos": 291, "end_pos": 348, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 203 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 401, "end_pos": 403 }, { "start_pos": 427, "end_pos": 429 }, { "start_pos": 432, "end_pos": 434 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJW8-1", "uniprot_ac": "A0A5G2QJW8", "uniprot_id": "A0A5G2QJW8_PIG", "mass": { "chemical_mass": 34602.0, "monoisotopic_mass": 34602.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "IL-40-like Ig domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QJW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QJW8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041583", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041583", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF17736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQLRLWGKKKKGVPKPGIEPKPQQPPEPQQGQCWLLNPLSDQGTLSISFSSIFFSFFLFLFCLFAFSRAAPHSIWRFPVSLLTETAHKVLEVVPRGRQVLIRHHSPGVQPSISSSLWGGGATEITKKGVGTYGPASNTIGVTPASRLVGLCSEGICSGEGVKVSLSHLPEPVSQLLVNFILLDGGPSGPWVKVSCWASSGSPPITYSLVGRDSGTYMKQTQNYKEAANFSFPLTQTSCWLRCQAANNISAQHSALTLVPPGEQTPRIPEGQLPGPAITLPLFQTTTFWLDFTSRRLGRRNMRSVTPPGQRKGRMAHV", "length": 318, "header": "tr|A0A5G2QJW8-1|A0A5G2QJW8_PIG Isoform 1 of IL-40-like Ig domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJW8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8/entry", "sequence": { "sequence": "MAQLRLWGKKKKGVPKPGIEPKPQQPPEPQQGQCWLLNPLSDQGTLSISFSSIFFSFFLFLFCLFAFSRAAPHSIWRFPVSLLTETAHKVLEVVPRGRQVLIRHHSPGVQPSISSSLWGGGATEITKKGVGTYGPASNTIGVTPASRLVGLCSEGICSGEGVKVSLSHLPEPVSQLLVNFILLDGGPSGPWVKVSCWASSGSPPITYSLVGRDSGTYMKQTQNYKEAANFSFPLTQTSCWLRCQAANNISAQHSALTLVPPGEQTPRIPEGQLPGPAITLPLFQTTTFWLDFTSRRLGRRNMRSVTPPGQRKGRMAHV", "length": 318, "header": "tr|A0A5G2QJW8-1|A0A5G2QJW8_PIG Isoform 1 of IL-40-like Ig domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QJW8-1" }, "locus": { "chromosome": "12", "start_pos": 3805533, "end_pos": 3802243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077609.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077609.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064788.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064788.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 143, "start_aa": "Thr", "end_pos": 143, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr143", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJW8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QJW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJW8" }, { "id": "PF17736", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17736" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IL-40-like Ig", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 263, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 143 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 }, { "start_pos": 248, "end_pos": 250 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJZ6-1", "uniprot_ac": "A0A5G2QJZ6", "uniprot_id": "A0A5G2QJZ6_PIG", "mass": { "chemical_mass": 21097.0, "monoisotopic_mass": 21097.0 }, "refseq": {}, "gene_names": [ { "name": "TDRP", "type": "recommended", "evidence": [ { "id": "A0A5G2QJZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ] } ], "protein_names": [ { "name": "Testis development related protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QJZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TDRP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6", "locus": { "chromosome": "15", "start_pos": 32408511, "end_pos": 32419636, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039562", "url": "https://www.ensembl.org/id/ENSSSCG00000039562" } ] } } ], "crossref": [ { "id": "A0A5G2QJZ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039562", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039562", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR35663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35663:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35663:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LWKLGRESPQLSLRFWLHGSLGKAGLFFCCIACHLLFQVQGASFRGWKEVTSLFNKDDEQHLLERCKSPKSRGTNLRVKEELKTEKKSGFWDNLVLKQNVQSKKPDEIEGWEPPKLVLEDVAADSGDPPSDRPSRPGWEEDAKGSTKYTSLAGAGSSSRWSLKSAGKLVSIRRQSKGHLTDNWEELE", "length": 187, "header": "tr|A0A5G2QJZ6-1|A0A5G2QJZ6_PIG Isoform 1 of Testis development related protein OS=Sus scrofa OX=9823 GN=TDRP PE=4 SV=1 CANONICAL=A0A5G2QJZ6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6/entry", "sequence": { "sequence": "LWKLGRESPQLSLRFWLHGSLGKAGLFFCCIACHLLFQVQGASFRGWKEVTSLFNKDDEQHLLERCKSPKSRGTNLRVKEELKTEKKSGFWDNLVLKQNVQSKKPDEIEGWEPPKLVLEDVAADSGDPPSDRPSRPGWEEDAKGSTKYTSLAGAGSSSRWSLKSAGKLVSIRRQSKGHLTDNWEELE", "length": 187, "header": "tr|A0A5G2QJZ6-1|A0A5G2QJZ6_PIG Isoform 1 of Testis development related protein OS=Sus scrofa OX=9823 GN=TDRP PE=4 SV=1 CANONICAL=A0A5G2QJZ6-1" }, "locus": { "chromosome": "15", "start_pos": 32419636, "end_pos": 32417658, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090644.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090644.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064293.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064293.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJZ6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK01-1", "uniprot_ac": "A0A5G2QK01", "uniprot_id": "A0A5G2QK01_PIG", "mass": { "chemical_mass": 54000.0, "monoisotopic_mass": 54000.0 }, "refseq": { "ac": "XP_020954758", "name": "ADP-dependent glucokinase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954758" }, "gene_names": [ { "name": "ADPGK", "type": "recommended", "evidence": [ { "id": "A0A5G2QK01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ] }, { "name": "ADPGK", "type": "synonym", "evidence": [ { "id": "XP_020954758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954758" } ] } ], "protein_names": [ { "name": "ADP-dependent glucokinase", "type": "recommended", "evidence": [ { "id": "A0A5G2QK01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.147", "type": "synonym", "evidence": [ { "id": "A0A5G2QK01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01/entry#names_and_taxonomy" } ] }, { "name": "ADP-dependent glucokinase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020954758", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954758" } ] } ], "function": [ { "annotation": "Catalyzes the phosphorylation of D-glucose to D-glucose 6-phosphate using ADP as the phosphate donor. GDP and CDP can replace ADP, but with reduced efficiency.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01#function" }, { "database": "UniProtKB", "id": "ARBA00053928", "url": "https://www.uniprot.org/uniprotkb/ARBA00053928#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADPGK", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01", "locus": { "chromosome": "7", "start_pos": 60623929, "end_pos": 60584051, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001925", "url": "https://www.ensembl.org/id/ENSSSCG00000001925" } ] } } ], "crossref": [ { "id": "A0A5G2QK01", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001925", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001925", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01938", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01938", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623786", "url": "https://www.ncbi.nlm.nih.gov/gene/100623786", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623786", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623786", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIHYMGR", "url": "https://omabrowser.org/oma/group/FIHYMGR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QK01", "url": "https://www.orthodb.org/?gene=A0A5G2QK01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21208", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21208", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21208:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21208:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04587", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04587", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70171", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70171", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954758", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954758", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "11460", "url": "https://www.rhea-db.org/rhea/11460", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI90", "url": "https://www.uniprot.org/uniprotkb/F1SI90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI90-1", "url": "https://www.uniprot.org/uniprotkb/F1SI90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALWRGSVYAGFFALAVGCVFLLEPQLPGSALRSLWNSLQLGPVPSPLGPGSPEGRLAAAWDALIVRPARSWRRVAVGVNACVDVVLSGVKLLQALGLNPGTGKDHTELHSRNDLEEAFIHFMGKGAAAERFFSDKESFHDIAQIASEFPGAQHYVGGNAALIGQKFAANSDLKVLLCGPVGPKLHELLDDNVFVPPESLQEMDEFHLILEYQAGEEWGQLKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKEFQRKRLLEVVASISDIPTGIPVHLELASMTNRELMGSIVHQQVFPAVTSLGLNEQELLFLSQSASGPHSSLSAWTGVPDVGMVSDILFWILKEHGRSESRASDLTRIHFHTLAYHILATVDGHWANQLAAVAAGARVAGTQACATATIDTHRVSLRAPLEFVTSRSEAGSRIVLNPNEPVVEWHREGVSFHFSPVLVCKDPVRTVGLGDAISAEGLFYSEVHPHH", "length": 497, "header": "tr|A0A5G2QK01-1|A0A5G2QK01_PIG Isoform 1 of ADP-dependent glucokinase OS=Sus scrofa OX=9823 GN=ADPGK PE=1 SV=1 CANONICAL=A0A5G2QK01-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01/entry", "sequence": { "sequence": "MALWRGSVYAGFFALAVGCVFLLEPQLPGSALRSLWNSLQLGPVPSPLGPGSPEGRLAAAWDALIVRPARSWRRVAVGVNACVDVVLSGVKLLQALGLNPGTGKDHTELHSRNDLEEAFIHFMGKGAAAERFFSDKESFHDIAQIASEFPGAQHYVGGNAALIGQKFAANSDLKVLLCGPVGPKLHELLDDNVFVPPESLQEMDEFHLILEYQAGEEWGQLKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKEFQRKRLLEVVASISDIPTGIPVHLELASMTNRELMGSIVHQQVFPAVTSLGLNEQELLFLSQSASGPHSSLSAWTGVPDVGMVSDILFWILKEHGRSESRASDLTRIHFHTLAYHILATVDGHWANQLAAVAAGARVAGTQACATATIDTHRVSLRAPLEFVTSRSEAGSRIVLNPNEPVVEWHREGVSFHFSPVLVCKDPVRTVGLGDAISAEGLFYSEVHPHH", "length": 497, "header": "tr|A0A5G2QK01-1|A0A5G2QK01_PIG Isoform 1 of ADP-dependent glucokinase OS=Sus scrofa OX=9823 GN=ADPGK PE=1 SV=1 CANONICAL=A0A5G2QK01-1" }, "locus": { "chromosome": "7", "start_pos": 60622925, "end_pos": 60584120, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100509.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100509.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076487.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076487.1" } ] } }, { "isoform_ac": "F1SI90-1", "url": "https://www.uniprot.org/uniprotkb/F1SI90/entry", "sequence": { "sequence": "VAASCSVVASISDIPTGIPVHLELASMTNRELMGSIVHQVFPAVTSLGLNEQELLFLSQSASGPHSSLSAWTGVPDVGMVSDILFWILKEHGRSESRASDLTRIHFHTLAYHILATVDGHWANQLAAVAAGARVAGTQACATATIDTHRVSLRAPLEFVTSRSEAGSRIVLNPNEPVVEWHREGVSFHFSPVLVCKDPVRTVGLGDAISAEGLFYSEVHPHH", "length": 222, "header": "tr|F1SI90-1|F1SI90_PIG Computationally mapped isoform of ADP dependent glucokinase OS=Sus scrofa OX=9823 GN=ADPGK PE=1 SV=4 CANONICAL=A0A5G2QK01-1" }, "locus": { "chromosome": "7", "start_pos": 60622925, "end_pos": 60619747, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002154.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002154.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002103.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002103.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623786", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623786", "resource": "KEGG Pathway" }, { "id": "R-SSC-70171", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70171", "resource": "Reactome", "description": "Glycolysis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZRD0-1", "protein_name": "ADP dependent glucokinase", "gene_name": "ADPGK", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWQRSVCVGLLALALGYLCLLGPQLPPSVLQHLSASLLGGLSRAGSLESRMVAAWQAAIVRPARGWGRVAVGVNACVDVVLSGVKLLEALGLKPGSGKNHDVLNSRQDLREAFTHFMEKGAAAERFFSDAESFHHIAQTASEHPGAQLYVGGNAALIGQKLAANPDLKILLCGPVGPKLHELLDDSVVVPPESMQERDEFHLILEYQAGEEWGQVKAPNANRFIFSHDLSNGALNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKEMRHRRLMEAVASISDIPTDIPIHLELASMTDQDFMSNIVHQQVFPLVNSIGLNEQELLFLTQSASGPHASLASWNGVPDVGAVSDILFWILKEHGKIADRASDLTRIHFHTLAYHILATVDGHWGNQVAAVAAGARAAGVQACATETIDTSKVFLKAPLEFVTSQIDAPSKISLNPDEPVVHWHREGISFHFTPVLVCKDPVRTVGLGDAISAEGLLYSEIYLQ", "length": 490 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2VE47-1", "protein_name": "ADP-dependent glucokinase", "gene_name": "ADPGK", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALWRGSAYAGFLALAVGCVFLLEPQLPGSALRSLWSSLQLGPAPAPPGVGSPEGRLAAAWDALIVRPARRWRRVAVGVNACVDVVLSGVKLLQALGLSPGNGKDHSELHSRNDLEEAFVHFMGKGAAAERFFSDKETFHDIAQVASEFPEAQHYVGGNAALIGQKFAANSDLKVLLCGPVGPKLHELLDDNVFVPPESLQEVDEFHLILEYQAGEEWDQLKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKEFQRKRLLEVVTSISDIPTGVPVHLELASMTNKELMSTIVHQQVFPAVTSLGLNEQELLFLSQSASGPHSSLSSWNGVPDVGVVSDILFWILKEHGKSESRASDLSRIHFHTLAYHILATVDGHWANQLAAVAAGARVAATQACATETIDTRRVSLKAPHEFMTSRLEAGSRVVLNPNEPVVEWHREGVSFHFTPVLVCKDPVRTVGLGDAISAEGLFYSEVHPHL", "length": 497 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V784-1", "protein_name": "ADP-dependent glucokinase", "gene_name": "Adpgk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALWRGSACAGFLALAVGCVFLLEPELPGTALRSLWSSLRLGPAPVPPGSLSPESRLAAAWDALIVQPARRWRRVAVGVNACVDVVISGVKLLQALGLSPGSGRDHAVLHSRSDLEEAFVHFMGKGAAAERFFSDRETFHDIAQAASEFPGAQHYVGGNAALIGQKFAANPDLKVLLCGPIGPKLHELLDDNVFVPPESLQEEDEFHLILEYLAGEEWGPFKAPQANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKELQRKRLLEVVTSISDIPTGIPVHLELASMTNRELMSSIVHQQVFPAVASLGLNEQELLFLSQSASGPHASLSSWDGVPDVGMVSDILFWILKEHGRSKSRSSDLTRIHFHTLVYHILATVDGHWANQLAAVAAGARVAGTQACATETIDTNRVSLRAPQEFMTSRLEPGSRIVLNPNKPVVEWHREGVTFHFTPVLVCKDPVRTVGLGDAISAEGLFYSEAYPD", "length": 496 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54K22-1", "protein_name": "Uncharacterized protein", "gene_name": "glk", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKRQTKNSPPLVGNSSPTSQSSQSPEISKKKLKKIEQKANRPKILVERPLSNLKFGGLVVFFICLVIFYIYLRINPLYDSGNNSNNLNNNNDNNNTNINIIDDIKSMKKIENGLKDIAKYKEWNEECKNKTIAVGYNTNLDLVVDAIELMDKLKLKSSIHNRPMSKEVIKSLDDFEQTFSHYFKSGSAAERMIENEDTFSAILAAALQSESKQFYTGGNAGIMANRLVADGCRVYLGGIIGKKLKELLSPSVSIIGYQSENGEEFDEIHLIMEYNKQSRWGSISPPRSNRFIISRDNTNSHLMTMESFHQEIEKKQPDLLLLSGLHLLTEEAQERRVNDMVNLLKQIPYNNNPSNFLNHPSLNVPIHLELASIASPSYINLLAKKIIPFVDSVGLNEQELGFIYVSTGGKKFSLDDFKEPSVNVVVNALLHIMEISFHYATTTTTSTTADRNVDDNILGDFGIPTMSKQRLLTRIHFHYLSFHLIITKSYSQWSPKLTSASVAASSIEATFQACRFNSVELLLPLSVEVDYRYTPGATKSIIIDPSSPVTTWQDSGYEFHLAPVLVCKSPLKTVGLGDSISTMGFLYQTIKSNEN", "length": 596 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VDL4-1", "protein_name": "ADP-dependent glucokinase", "gene_name": "Adpgk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALWRGSACAGFLALAVGCVFLLEPELPGTALRSLWSSLRLGPAPVPVGPLSPESRLAAAWDALIAQPARRWRRVAVGVNACVDVVISGVKLLQALGLSPGSGKDHAILHSRSDLEEAFLYFMGKGAAAERFFSDKETFHDIAQAASEFPGAQHYVGGNAALIGQRFAANTDLKVLLCGPIGPKLHELLDDNVFVPPESLQEEDEFHLILEYLAGEEWGPFKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKELQRKRLLEVVTAISDIPTGIPVHLELASMTNRELMSSIVHQQVFPAVASLGLNEQELLFLSQSASGPHSSLSSWDGVPDVGMVSDILFWILKEHGRSENRASDLTRIHFHTLVYHILATVDGHWANQLAAVAAGARVAGTQACATETIDTNRVSLRAPQEFTTSHLESGSRIVLNPDKPVVEWHREGITFHFTPVLVCKDPVRTVGLGDAISAEGLFYSEARPD", "length": 496 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRR6-1", "protein_name": "ADP-dependent glucokinase", "gene_name": "ADPGK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALWRGSAYAGFLALAVGCVFLLEPELPGSALRSLWSSLCLGPAPAPPGPVSPEGRLAAAWDALIVRPVRRWRRVAVGVNACVDVVLSGVKLLQALGLSPGNGKDHSILHSRNDLEEAFIHFMGKGAAAERFFSDKETFHDIAQVASEFPGAQHYVGGNAALIGQKFAANSDLKVLLCGPVGPKLHELLDDNVFVPPESLQEVDEFHLILEYQAGEEWGQLKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKELQRKRLLEVVTSISDIPTGIPVHLELASMTNRELMSSIVHQQVFPAVTSLGLNEQELLFLTQSASGPHSSLSSWNGVPDVGMVSDILFWILKEHGRSKSRASDLTRIHFHTLVYHILATVDGHWANQLAAVAAGARVAGTQACATETIDTSRVSLRAPQEFMTSHSEAGSRIVLNPNKPVVEWHREGISFHFTPVLVCKDPIRTVGLGDAISAEGLFYSEVHPHY", "length": 497 }, "evidence": [ { "id": "A0A5G2QK01", "url": "https://omabrowser.org/oma/group/A0A5G2QK01/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" }, { "name": "ADP-specific glucokinase activity", "id": "GO:0043843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043843", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" }, { "name": "phosphotransferase activity, alcohol group as acceptor", "id": "GO:0016773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016773", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glucose metabolic process", "id": "GO:0006006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006006", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" }, { "name": "glycolytic process", "id": "GO:0006096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11460", "name": "", "equation": "D-glucose + ADP = D-glucose 6-phosphate + AMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11460", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11460" } ] }, { "id": "R-SSC-5696021", "name": "ADPGK:Mg2+ phosphorylates Glc to G6P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696021", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696021" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 497, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK01" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK19-1", "uniprot_ac": "A0A5G2QK19", "uniprot_id": "A0A5G2QK19_PIG", "mass": { "chemical_mass": 32461.0, "monoisotopic_mass": 32461.0 }, "refseq": {}, "gene_names": [ { "name": "LRATD1", "type": "recommended", "evidence": [ { "id": "A0A5G2QK19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" } ] } ], "protein_names": [ { "name": "LRAT domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QK19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRATD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19", "locus": { "chromosome": "3", "start_pos": 122716040, "end_pos": 122731791, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008664", "url": "https://www.ensembl.org/id/ENSSSCG00000008664" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008664", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008664", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IYEHDDQ", "url": "https://omabrowser.org/oma/group/IYEHDDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46341:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46341:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK19-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCAPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE", "length": 292, "header": "tr|A0A5G2QK19-1|A0A5G2QK19_PIG Isoform 1 of LRAT domain containing 1 OS=Sus scrofa OX=9823 GN=LRATD1 PE=3 SV=1 CANONICAL=A0A5G2QK19-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK19-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19/entry", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCAPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE", "length": 292, "header": "tr|A0A5G2QK19-1|A0A5G2QK19_PIG Isoform 1 of LRAT domain containing 1 OS=Sus scrofa OX=9823 GN=LRATD1 PE=3 SV=1 CANONICAL=A0A5G2QK19-1" }, "locus": { "chromosome": "3", "start_pos": 122719364, "end_pos": 122718489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086968.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086968.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072636.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072636.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LDI9-1", "protein_name": "Protein LRATD1", "gene_name": "Lratd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCSPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVTGGPQGADLSVYTVTALPAICEPGDLLELLWLQPATEQPAPAPHWAVYVGGGQIIHLYQGEIRQDSLYQAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASGRLRVLQELEDFVDDKE", "length": 292 }, "evidence": [ { "id": "A0A5G2QK19", "url": "https://omabrowser.org/oma/group/A0A5G2QK19/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BWY1-1", "protein_name": "LRAT domain containing 1", "gene_name": "FAM84A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKYSVKGSGSPDQETPTHHLHHQLVLNETQFSAFRGQECIFSKVSSGPQAGDLSVYSVSALPALCKPGDLLELLYLGPSEQPPPHWAVYVGSGQIIHLHQGQIRQDSLYEAPAGNVGRVVNSWYRFRPLVAELVVQNACGHLGLKSDEICWTNSESFAAWCRFGKREFKAGGELQAAAGTQQQYYLKIHLAENKVHTVRFHSLEDLIREKRRIDASGKLRVIKDLAIVDGKE", "length": 282 }, "evidence": [ { "id": "A0A5G2QK19", "url": "https://omabrowser.org/oma/group/A0A5G2QK19/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZCA1-1", "protein_name": "Protein LRATD1", "gene_name": "LRATD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKAPPGCAPCPESPSRHHHHHHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLCQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLADNKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE", "length": 297 }, "evidence": [ { "id": "A0A5G2QK19", "url": "https://omabrowser.org/oma/group/A0A5G2QK19/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96KN4-1", "protein_name": "Protein LRATD1", "gene_name": "LRATD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDDEEDLDERGQPDKFGVKAPPGCTPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSVYAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDDKE", "length": 292 }, "evidence": [ { "id": "A0A5G2QK19", "url": "https://omabrowser.org/oma/group/A0A5G2QK19/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D650-1", "protein_name": "Protein LRATD1", "gene_name": "Lratd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCSPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVTGGPQGADLSVYAVTALPAICEPGDLLELLWLQPATEQPAPAPHWAVYVGGGQVIHLHQGEIRQDSLYQAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASGRLRVLQELEDFVDDKE", "length": 292 }, "evidence": [ { "id": "A0A5G2QK19", "url": "https://omabrowser.org/oma/group/A0A5G2QK19/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" } ], "pmid": "" }, { "name": "cell motility", "id": "GO:0048870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048870", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QK19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK19" }, { "id": "PS51934", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51934" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRAT", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 228, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK32-1", "uniprot_ac": "A0A5G2QK32", "uniprot_id": "A0A5G2QK32_PIG", "mass": { "chemical_mass": 334613.0, "monoisotopic_mass": 334613.0 }, "refseq": {}, "gene_names": [ { "name": "FRY", "type": "recommended", "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ] } ], "protein_names": [ { "name": "FRY microtubule binding protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRY", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000009338", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009338", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12295:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12295:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14228", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14228", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASQQDSGFFEISIKYLLKSWSNTSPVGNGYIKPPVPPVSGTQKEKGPPTMLPISVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYCLPSILRTLFDWYKRQNGIEDESHEYRPRTSNKTKSDEQQRDYLMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDVINLAFKHFKYKEGYLGPNTGNMHIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVVQSIISLIMGMKFFRIKMYPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVNVPCLRNFVESLYDTTLELSSRKKHSLALYPLVTCLLCVSQKQLFLNRWHVFLNNCLSNLKNKDPKMARVALESLYRLLWVYMIRIKCESNTATQSRLITIITTLFPKGSRGVVPRDMPLNIFVKIIQFIAQERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAVLPSGNTLRVKKTYLSKTLTEEEAKMIGMSLYYSQVRKAVDNILRHLDKEVGRCMMLTNVQMLNKEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHMDDELRHIAQNSLQGLLVDFSDWREDVLFGFTNFLLREVNDMHHTLLDSSLKLLLQLLTQWKLVIQTQGKVYEQANKIRNSELIANGSSHRVQSERGPHCSVLHAVEGFALVLLCSFQVATRKLSVLILKEIRALFVALGQPEDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLTHSVDLQWLVEWSAVLVNSHYDVKSPSHVWIFAQSVKDPWVLCLFSFLRQENLPKHCPTALSYAWPYAFTRLQSVMPLVDPNSPINAKKTSTAGSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQLVPLMRLEGIEITESLVLGFGRTNSLVFRYISFLVLPLSTQNKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEYVDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQRVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSDRNHQITRYQYCALKAMSAVLCCGPVFDNVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVVLLLELNPDQINLFNWAIDRCYTGSYQLASGCFKAIATVCGSRNYPFDIVTLLNLVLFKASDTNREIYEISMQLMQILEAKLFVYSKKVAEQRPGSILYGTHGPLPPLYSVSLALLSCELPCSPSRLPPEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRLLLPGSSPSSPEDDVKDRDGEPTASHGLKGSGWGSPEATSLVLNNLMYMTAKYGDEVPGPEMENAWNALANNEKWSNNLRVTLQFLISLCGVSSDTLLLPYIKKVAMYLCRNNTIQTMEELLFELQQTEPVNPIVQHCDNPPFYRFAASSKASAAASGTTSSSNTVVAGQDSFPDAEENKILKESDERFSNVIRAHTRLESRYSNSSGGSYDEDKNDPISPYTGWLLTITETKQPQPLPMPCTGGCWAPLVDYLPETITPRGPLHRCNIAVIFMTEMVVDHSVREDWALHLPLLLHAVFLGLDHYRPEVFEHSKKLLLHLLIALSCNSNFQAIASVLLQTREMGAAKTLTVQPAYQPEYLYTGGFDFLREDQSSPVPDSGLSSSSTSSSISLGGSSGNLPQMTQEVEDVDAAAETDEKANKLIEFLTTRAFGPLWCHEDITPKNQNSKSAEQLTNFLRHVVSVFKDSKSGFHLEQHLSEVALQTALASSSRHYAGRSFQIFRALKQPLSAHALSDLLSRLVEVIGEHGDEIQGYVMEALLTLEAAVDNLSDCLKNSDLLTVLSRSSSPDLSSSTKLTASRKSTGQLNVNPGTASGNTATAERSRHQRSFSVPKKFGVIDRSSDPPRSATLDRIQACTQQGLSSKTRSSSSLKDSLTDPSHISHPTNLLATIFWVTVALMESDFEFEYLMALRLLNRLLAHMPLDKAENREKLEKLQAQLKWADFSGLQQLLLKGFTSLTTTDLTLQLFSLLTPVSKVSMVDSSQAIGFPLNVLCLLPQLIQHFENPNQFCKDVAERIAQVCLEEKNPKLSNLAHVMTLYKTHSYTRDCATWVNVVCRYLHEAYADITLNMVTYLAELLEKGLPSMQQPLLQVIYSLLSYVDLSGVPVKQFNVEVLKTIEKYVQSVHWREALNILKLVVSRSASLVLPSYQHSDLSKMEIHRVWTSASKELPGKTLDFHFDISETPIIGRRYDELQSSAGRDGKPRAMAVTRSTSSTSSGSNSNVLVPVSWKRPQYSQKRTKEKLVHVLSLCGQEVGLSKNPSVIFSSCGDLDLLEHQTSLVSSEDGAREQENMDDTNSEQQFRVFRDFDFLDVELEDGEGESMDNFNWGVRRRSLDSLDKCDMQLLEERQLSGSSPSLNKMNQEDSDESSEEEDLTASQILEQSDLIMNLSPSEETNPVDSLTAACDMTPADSHSFNTRMASFDASLPEMNNLQISEGSKAAALEEPRTFGRETWLSWSQKGIPETLSGSWAGLPRPGEKGLWRRREGRLSPSLALFSAILAAFQPTACDDAEEAWRSHINQLMCDSDGSCAVYTFHVSPQYQKRFCFLTCDAASYLGDNLRGIGSKLSALPDAHLLLRVPTLFVDAETLLSCGLLDKLKFSVLELQEYLDTYNNRKEATLSWLANCKATFAGGSRDGVITCQPGDSEEKQLELCQRLYKLHFQLLLLFQSYCKLIGQVHEVSSTPELLNMSRELSDLKKSLKEATAAIAAEPLYAEGAWAEPTFTSTEAAIQSMLECLKNNQLGKALRQIRECRSLWPNDIFGSSSDDEVQTLLNIYFRHQTLGQTGTYALVGSNQSLTEICTKLMELNLEIRDMIRRAQSYRVLTAFLPDSSASGTSL", "length": 2982, "header": "tr|A0A5G2QK32-1|A0A5G2QK32_PIG Isoform 1 of FRY microtubule binding protein OS=Sus scrofa OX=9823 GN=FRY PE=1 SV=1 CANONICAL=A0A5G2QK32-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32/entry", "sequence": { "sequence": "MASQQDSGFFEISIKYLLKSWSNTSPVGNGYIKPPVPPVSGTQKEKGPPTMLPISVDPDSKPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYCLPSILRTLFDWYKRQNGIEDESHEYRPRTSNKTKSDEQQRDYLMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDVINLAFKHFKYKEGYLGPNTGNMHIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVVQSIISLIMGMKFFRIKMYPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVNVPCLRNFVESLYDTTLELSSRKKHSLALYPLVTCLLCVSQKQLFLNRWHVFLNNCLSNLKNKDPKMARVALESLYRLLWVYMIRIKCESNTATQSRLITIITTLFPKGSRGVVPRDMPLNIFVKIIQFIAQERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAVLPSGNTLRVKKTYLSKTLTEEEAKMIGMSLYYSQVRKAVDNILRHLDKEVGRCMMLTNVQMLNKEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHMDDELRHIAQNSLQGLLVDFSDWREDVLFGFTNFLLREVNDMHHTLLDSSLKLLLQLLTQWKLVIQTQGKVYEQANKIRNSELIANGSSHRVQSERGPHCSVLHAVEGFALVLLCSFQVATRKLSVLILKEIRALFVALGQPEDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLTHSVDLQWLVEWSAVLVNSHYDVKSPSHVWIFAQSVKDPWVLCLFSFLRQENLPKHCPTALSYAWPYAFTRLQSVMPLVDPNSPINAKKTSTAGSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEIMATTPDGTVSYDNKAIGTPSVGVLLKQLVPLMRLEGIEITESLVLGFGRTNSLVFRYISFLVLPLSTQNKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEYVDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQRVPVHHRRFLFPQQSLRHHLFILFSQWAGPFSIMFTPLDRYSDRNHQITRYQYCALKAMSAVLCCGPVFDNVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVVLLLELNPDQINLFNWAIDRCYTGSYQLASGCFKAIATVCGSRNYPFDIVTLLNLVLFKASDTNREIYEISMQLMQILEAKLFVYSKKVAEQRPGSILYGTHGPLPPLYSVSLALLSCELPCSPSRLPPEVSQRFPTTHPNGRQIMLTYLLPWLHNIELVDSRLLLPGSSPSSPEDDVKDRDGEPTASHGLKGSGWGSPEATSLVLNNLMYMTAKYGDEVPGPEMENAWNALANNEKWSNNLRVTLQFLISLCGVSSDTLLLPYIKKVAMYLCRNNTIQTMEELLFELQQTEPVNPIVQHCDNPPFYRFAASSKASAAASGTTSSSNTVVAGQDSFPDAEENKILKESDERFSNVIRAHTRLESRYSNSSGGSYDEDKNDPISPYTGWLLTITETKQPQPLPMPCTGGCWAPLVDYLPETITPRGPLHRCNIAVIFMTEMVVDHSVREDWALHLPLLLHAVFLGLDHYRPEVFEHSKKLLLHLLIALSCNSNFQAIASVLLQTREMGAAKTLTVQPAYQPEYLYTGGFDFLREDQSSPVPDSGLSSSSTSSSISLGGSSGNLPQMTQEVEDVDAAAETDEKANKLIEFLTTRAFGPLWCHEDITPKNQNSKSAEQLTNFLRHVVSVFKDSKSGFHLEQHLSEVALQTALASSSRHYAGRSFQIFRALKQPLSAHALSDLLSRLVEVIGEHGDEIQGYVMEALLTLEAAVDNLSDCLKNSDLLTVLSRSSSPDLSSSTKLTASRKSTGQLNVNPGTASGNTATAERSRHQRSFSVPKKFGVIDRSSDPPRSATLDRIQACTQQGLSSKTRSSSSLKDSLTDPSHISHPTNLLATIFWVTVALMESDFEFEYLMALRLLNRLLAHMPLDKAENREKLEKLQAQLKWADFSGLQQLLLKGFTSLTTTDLTLQLFSLLTPVSKVSMVDSSQAIGFPLNVLCLLPQLIQHFENPNQFCKDVAERIAQVCLEEKNPKLSNLAHVMTLYKTHSYTRDCATWVNVVCRYLHEAYADITLNMVTYLAELLEKGLPSMQQPLLQVIYSLLSYVDLSGVPVKQFNVEVLKTIEKYVQSVHWREALNILKLVVSRSASLVLPSYQHSDLSKMEIHRVWTSASKELPGKTLDFHFDISETPIIGRRYDELQSSAGRDGKPRAMAVTRSTSSTSSGSNSNVLVPVSWKRPQYSQKRTKEKLVHVLSLCGQEVGLSKNPSVIFSSCGDLDLLEHQTSLVSSEDGAREQENMDDTNSEQQFRVFRDFDFLDVELEDGEGESMDNFNWGVRRRSLDSLDKCDMQLLEERQLSGSSPSLNKMNQEDSDESSEEEDLTASQILEQSDLIMNLSPSEETNPVDSLTAACDMTPADSHSFNTRMASFDASLPEMNNLQISEGSKAAALEEPRTFGRETWLSWSQKGIPETLSGSWAGLPRPGEKGLWRRREGRLSPSLALFSAILAAFQPTACDDAEEAWRSHINQLMCDSDGSCAVYTFHVSPQYQKRFCFLTCDAASYLGDNLRGIGSKLSALPDAHLLLRVPTLFVDAETLLSCGLLDKLKFSVLELQEYLDTYNNRKEATLSWLANCKATFAGGSRDGVITCQPGDSEEKQLELCQRLYKLHFQLLLLFQSYCKLIGQVHEVSSTPELLNMSRELSDLKKSLKEATAAIAAEPLYAEGAWAEPTFTSTEAAIQSMLECLKNNQLGKALRQIRECRSLWPNDIFGSSSDDEVQTLLNIYFRHQTLGQTGTYALVGSNQSLTEICTKLMELNLEIRDMIRRAQSYRVLTAFLPDSSASGTSL", "length": 2982, "header": "tr|A0A5G2QK32-1|A0A5G2QK32_PIG Isoform 1 of FRY microtubule binding protein OS=Sus scrofa OX=9823 GN=FRY PE=1 SV=1 CANONICAL=A0A5G2QK32-1" }, "locus": { "chromosome": "11", "start_pos": 8763896, "end_pos": 8518847, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086456.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086456.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064338.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064338.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "pmid": "" }, { "name": "site of polarized growth", "id": "GO:0030427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030427", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1474, "end_pos": 1476, "annotation": "n_glycosylation_sequon" }, { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1567, "end_pos": 1569, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1910, "end_pos": 1912, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2531, "end_pos": 2533, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2832, "end_pos": 2834, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2938, "end_pos": 2940, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" }, { "id": "PF14228", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14228" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis central region", "eco_id": "ECO_0000259", "start_pos": 1202, "end_pos": 1357, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" }, { "id": "PF14225", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 2031, "end_pos": 2283, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" }, { "id": "PF14222", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cell morphogenesis protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 165, "end_pos": 697, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QK32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK32" }, { "id": "PF19421", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19421" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein furry C-terminal", "eco_id": "ECO_0000259", "start_pos": 2308, "end_pos": 2982, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1474, "end_pos": 1476 }, { "start_pos": 151, "end_pos": 153 }, { "start_pos": 1567, "end_pos": 1569 }, { "start_pos": 1910, "end_pos": 1912 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 2531, "end_pos": 2533 }, { "start_pos": 2832, "end_pos": 2834 }, { "start_pos": 2938, "end_pos": 2940 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK42-1", "uniprot_ac": "A0A5G2QK42", "uniprot_id": "A0A5G2QK42_PIG", "mass": { "chemical_mass": 72899.0, "monoisotopic_mass": 72899.0 }, "refseq": {}, "gene_names": [ { "name": "REDIC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QK42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42" } ] } ], "protein_names": [ { "name": "Regulator of DNA class I crossover intermediates 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QK42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "REDIC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42", "locus": { "chromosome": "5", "start_pos": 71270728, "end_pos": 71185592, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000782", "url": "https://www.ensembl.org/id/ENSSSCG00000000782" } ] } } ], "crossref": [ { "id": "A0A5G2QK42", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK42", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000782", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000782", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR35158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35158:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35158:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNWVGGSRTRVLVKQERRKQKEYFEKKRLKSKMKLLGVLSPVKNSTVSLDLLNLYMVNQISCQKKMPETVRKPTHVNMNRDIKMPLRRHDVELPMSPHCVPSNLCIDDIENNVCHQRLRSKEELKEQVQSSQVKYSYGIFESLFNRTENCSFTPPSLLAELSSNRNIIKQNFIPRIAQNPQKVAYEKKQNEQLNNVSYSNSLASKLNESQDALSPSYERAQFGTLFERSNSLGNKTFLTRRAAVVMDEDCGSIDERRQSDFIPEKKSLQRIWGENRKEISNEDVNQQIPSLLSENCDSFISKNMINLLNIDQQKIKKTFDKCDYDTMEGICTVISSDKNHFTDRCIRSIFTDPELNFSNSTFNKSSYPENCQPNKNCQNEYNNERNNFSTSFEKDHYPASSDKKGKFESDYQDKTPQKKIPQKKYSVNHTRNIPLEELHSKQSWDFGLGELDSSQSSQTTSYSPMPTDSCFSSSSEMPSEDEDQILHQIEDSNRTSIKIKETTNNVYLESMGSMGKLPCDRIIKNNARFHKQNENFHQFSMKNNTDESPQSPYNSACILQNTANNDCILQLTRCDAWVQTESESVIEEKLDIAIQCDIISKCKCGNMSFFDVEKCNENIKSDTTGGQEILKNS", "length": 633, "header": "tr|A0A5G2QK42-1|A0A5G2QK42_PIG Isoform 1 of Regulator of DNA class I crossover intermediates 1 OS=Sus scrofa OX=9823 GN=REDIC1 PE=4 SV=2 CANONICAL=A0A5G2QK42-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42/entry", "sequence": { "sequence": "MNWVGGSRTRVLVKQERRKQKEYFEKKRLKSKMKLLGVLSPVKNSTVSLDLLNLYMVNQISCQKKMPETVRKPTHVNMNRDIKMPLRRHDVELPMSPHCVPSNLCIDDIENNVCHQRLRSKEELKEQVQSSQVKYSYGIFESLFNRTENCSFTPPSLLAELSSNRNIIKQNFIPRIAQNPQKVAYEKKQNEQLNNVSYSNSLASKLNESQDALSPSYERAQFGTLFERSNSLGNKTFLTRRAAVVMDEDCGSIDERRQSDFIPEKKSLQRIWGENRKEISNEDVNQQIPSLLSENCDSFISKNMINLLNIDQQKIKKTFDKCDYDTMEGICTVISSDKNHFTDRCIRSIFTDPELNFSNSTFNKSSYPENCQPNKNCQNEYNNERNNFSTSFEKDHYPASSDKKGKFESDYQDKTPQKKIPQKKYSVNHTRNIPLEELHSKQSWDFGLGELDSSQSSQTTSYSPMPTDSCFSSSSEMPSEDEDQILHQIEDSNRTSIKIKETTNNVYLESMGSMGKLPCDRIIKNNARFHKQNENFHQFSMKNNTDESPQSPYNSACILQNTANNDCILQLTRCDAWVQTESESVIEEKLDIAIQCDIISKCKCGNMSFFDVEKCNENIKSDTTGGQEILKNS", "length": 633, "header": "tr|A0A5G2QK42-1|A0A5G2QK42_PIG Isoform 1 of Regulator of DNA class I crossover intermediates 1 OS=Sus scrofa OX=9823 GN=REDIC1 PE=4 SV=2 CANONICAL=A0A5G2QK42-1" }, "locus": { "chromosome": "5", "start_pos": 71270725, "end_pos": 71185711, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069177.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069177.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064348.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064348.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 467, "start_aa": "Thr", "end_pos": 467, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr467", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 606, "end_pos": 608, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK42-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 633, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK42-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK42" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 467 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 363, "end_pos": 365 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 428, "end_pos": 430 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 543, "end_pos": 545 }, { "start_pos": 606, "end_pos": 608 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK43-1", "uniprot_ac": "A0A5G2QK43", "uniprot_id": "A0A5G2QK43_PIG", "mass": { "chemical_mass": 97710.0, "monoisotopic_mass": 97710.0 }, "refseq": {}, "gene_names": [ { "name": "GARIN5B", "type": "recommended", "evidence": [ { "id": "A0A5G2QK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43" } ] } ], "protein_names": [ { "name": "Golgi associated RAB2 interactor family member 5B", "type": "synonym", "evidence": [ { "id": "A0A5G2QK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GARIN5B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43", "locus": { "chromosome": "6", "start_pos": 59532074, "end_pos": 59540296, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000051187", "url": "https://www.ensembl.org/id/ENSSSCG00000051187" } ] } } ], "crossref": [ { "id": "A0A5G2QK43", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051187", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051187", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR022168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22574:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22574:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRLRDIQRLEPLQGPLKWVPTLGELQKTLQKGEYLPLRPLPMFESNFVQVTNRGAPAYVHHRTNRVTMGVAASLPGLVLPDILLMAQPPEGRECANLVLTRMIPLDLVHLYVHDLSAWRLKLRLVTGRYYYLELDAPDNEIGFLFDRWIRLINLLQQPATSWAPRTLHTPPMNLAHVAPPASTWRLQDQSHHRRSVLLVKPTFPYKMLTAQRQRKAKTLRRQFKSQAVGDSVPLVWSQLEHADPKKKSTEKKSQTDVCLDRPQTQTQGSEKPSITIRTIFSIISNTANHSEPSHKGCSDSEAATCLAGLLETPSRCISGVGPETPLLGSCDHLDMYLWQQEMEDLMDPESSTLSTSSLGPATYPPDFHCSAPQSSFPKCSREARPLDPAHRLWPPPSQKPPAVPAASSKAPFILDQSHKVSAVPATPRKAPQEAPAVPALSRKAPRASAAPHKAPTVPAPSQKLPRVPAAPHKAPAVVAPSRKAPHVTAAPHKAPAKKVPHAPAIPPKAMSPPAPNRKSVFLPTVSQKALISPIQHQMILGPANVGVLPMGSRGEGVLEQSKPDGKPEPVVLVGTQETNMAEVRTQKTSLELPFGTTEKESEDVLVSKSRVIMVDGLKGKGKLEDKVHRMKEEIALDMPGFKSKEVAQQTKWVKTQELTIEEALQEHSRPFSVEGLTLAKLMIIASSKEPSMKPALVSLPSWLSTPQGSAMPTTGTVPLSPTKGSLPEEPPAMAREQPPSGVWVKRTTRPWGEVEELPQDPKGPSKGRPHSKRAASSPKMNVASLTPIPLPSTRWEEVPESPGSLTPISKMEARVSQQTKRGSQEPKRSLDQHPVATTGSSLEVLLPTLLEIESMKDTVSKVEKIKEELGVFAPSTSLHPSQRPQRDSGTR", "length": 892, "header": "tr|A0A5G2QK43-1|A0A5G2QK43_PIG Isoform 1 of Golgi associated RAB2 interactor family member 5B OS=Sus scrofa OX=9823 GN=GARIN5B PE=3 SV=2 CANONICAL=A0A5G2QK43-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43/entry", "sequence": { "sequence": "MNRLRDIQRLEPLQGPLKWVPTLGELQKTLQKGEYLPLRPLPMFESNFVQVTNRGAPAYVHHRTNRVTMGVAASLPGLVLPDILLMAQPPEGRECANLVLTRMIPLDLVHLYVHDLSAWRLKLRLVTGRYYYLELDAPDNEIGFLFDRWIRLINLLQQPATSWAPRTLHTPPMNLAHVAPPASTWRLQDQSHHRRSVLLVKPTFPYKMLTAQRQRKAKTLRRQFKSQAVGDSVPLVWSQLEHADPKKKSTEKKSQTDVCLDRPQTQTQGSEKPSITIRTIFSIISNTANHSEPSHKGCSDSEAATCLAGLLETPSRCISGVGPETPLLGSCDHLDMYLWQQEMEDLMDPESSTLSTSSLGPATYPPDFHCSAPQSSFPKCSREARPLDPAHRLWPPPSQKPPAVPAASSKAPFILDQSHKVSAVPATPRKAPQEAPAVPALSRKAPRASAAPHKAPTVPAPSQKLPRVPAAPHKAPAVVAPSRKAPHVTAAPHKAPAKKVPHAPAIPPKAMSPPAPNRKSVFLPTVSQKALISPIQHQMILGPANVGVLPMGSRGEGVLEQSKPDGKPEPVVLVGTQETNMAEVRTQKTSLELPFGTTEKESEDVLVSKSRVIMVDGLKGKGKLEDKVHRMKEEIALDMPGFKSKEVAQQTKWVKTQELTIEEALQEHSRPFSVEGLTLAKLMIIASSKEPSMKPALVSLPSWLSTPQGSAMPTTGTVPLSPTKGSLPEEPPAMAREQPPSGVWVKRTTRPWGEVEELPQDPKGPSKGRPHSKRAASSPKMNVASLTPIPLPSTRWEEVPESPGSLTPISKMEARVSQQTKRGSQEPKRSLDQHPVATTGSSLEVLLPTLLEIESMKDTVSKVEKIKEELGVFAPSTSLHPSQRPQRDSGTR", "length": 892, "header": "tr|A0A5G2QK43-1|A0A5G2QK43_PIG Isoform 1 of Golgi associated RAB2 interactor family member 5B OS=Sus scrofa OX=9823 GN=GARIN5B PE=3 SV=2 CANONICAL=A0A5G2QK43-1" }, "locus": { "chromosome": "6", "start_pos": 59539762, "end_pos": 59532074, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087682.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087682.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062427.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062427.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 892, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK43" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QK43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK43" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 98, "end_pos": 165, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 289, "end_pos": 291 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK54-1", "uniprot_ac": "A0A5G2QK54", "uniprot_id": "A0A5G2QK54_PIG", "mass": { "chemical_mass": 13809.0, "monoisotopic_mass": 13809.0 }, "refseq": {}, "gene_names": [ { "name": "TUT7", "type": "recommended", "evidence": [ { "id": "A0A5G2QK54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54" } ] } ], "protein_names": [ { "name": "polynucleotide adenylyltransferase", "type": "recommended", "evidence": [ { "id": "A0A5G2QK54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.19", "type": "synonym", "evidence": [ { "id": "A0A5G2QK54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TUT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK54", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010952", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010952", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05402", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05402", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12271:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12271:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19088", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQPDVLLLVQECLKNSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTNHLTALGKLESKLVPLVIAFRHWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGSWV", "length": 124, "header": "tr|A0A5G2QK54-1|A0A5G2QK54_PIG Isoform 1 of polynucleotide adenylyltransferase OS=Sus scrofa OX=9823 GN=TUT7 PE=4 SV=1 CANONICAL=A0A5G2QK54-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54/entry", "sequence": { "sequence": "MSQPDVLLLVQECLKNSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTNHLTALGKLESKLVPLVIAFRHWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGSWV", "length": 124, "header": "tr|A0A5G2QK54-1|A0A5G2QK54_PIG Isoform 1 of polynucleotide adenylyltransferase OS=Sus scrofa OX=9823 GN=TUT7 PE=4 SV=1 CANONICAL=A0A5G2QK54-1" }, "locus": { "chromosome": "10", "start_pos": 29015134, "end_pos": 29011207, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077134.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077134.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065188.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065188.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "poly(A) RNA polymerase activity", "id": "GO:1990817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990817", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QK54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK54" }, { "id": "PF19088", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19088" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Terminal uridylyltransferase 4/7 nucleotidyltransferase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 49, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK57-1", "uniprot_ac": "A0A5G2QK57", "uniprot_id": "A0A5G2QK57_PIG", "mass": { "chemical_mass": 19977.0, "monoisotopic_mass": 19977.0 }, "refseq": {}, "gene_names": [ { "name": "JPT2", "type": "recommended", "evidence": [ { "id": "A0A5G2QK57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ] } ], "protein_names": [ { "name": "Jupiter microtubule associated homolog 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QK57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "JPT2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57", "locus": { "chromosome": "3", "start_pos": 40244011, "end_pos": 40256980, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008019", "url": "https://www.ensembl.org/id/ENSSSCG00000008019" } ] } } ], "crossref": [ { "id": "A0A5G2QK57", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008019", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008019", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR033335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34930", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34930", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34930:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34930:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "J9JIM0", "url": "https://www.uniprot.org/uniprotkb/J9JIM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "J9JIM0-1", "url": "https://www.uniprot.org/uniprotkb/J9JIM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRVPETEGGRAGSRAMKPPRGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKRTNPPWGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSISFY", "length": 188, "header": "tr|A0A5G2QK57-1|A0A5G2QK57_PIG Isoform 1 of Jupiter microtubule associated homolog 2 OS=Sus scrofa OX=9823 GN=JPT2 PE=1 SV=1 CANONICAL=A0A5G2QK57-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57/entry", "sequence": { "sequence": "MFRVPETEGGRAGSRAMKPPRGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKRTNPPWGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSISFY", "length": 188, "header": "tr|A0A5G2QK57-1|A0A5G2QK57_PIG Isoform 1 of Jupiter microtubule associated homolog 2 OS=Sus scrofa OX=9823 GN=JPT2 PE=1 SV=1 CANONICAL=A0A5G2QK57-1" }, "locus": { "chromosome": "3", "start_pos": 40256950, "end_pos": 40246319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086940.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086940.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062442.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062442.1" } ] } }, { "isoform_ac": "J9JIM0-1", "url": "https://www.uniprot.org/uniprotkb/J9JIM0/entry", "sequence": { "sequence": "MAGDMFRVPETEGGRAGSRAMKPPRGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKRTNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSISFY", "length": 192, "header": "tr|J9JIM0-1|J9JIM0_PIG Computationally mapped isoform of Jupiter microtubule associated homolog 2 OS=Sus scrofa OX=9823 GN=JPT2 PE=1 SV=1 CANONICAL=A0A5G2QK57-1" }, "locus": { "chromosome": "3", "start_pos": 40256962, "end_pos": 40246319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008787.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008787.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008563.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008563.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of calcium-mediated signaling", "id": "GO:0050848", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050848", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "pmid": "" }, { "name": "endocytosis involved in viral entry into host cell", "id": "GO:0075509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0075509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 188, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK57" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK70-1", "uniprot_ac": "A0A5G2QK70", "uniprot_id": "A0A5G2QK70_PIG", "mass": { "chemical_mass": 33502.0, "monoisotopic_mass": 33502.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QK70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK70", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK70", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042849", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042849", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVSNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKVEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTARHIIIKMAKVSDKERILKAARENQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKVYTATQNPG", "length": 288, "header": "tr|A0A5G2QK70-1|A0A5G2QK70_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QK70-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVSNETDLCSQTDLEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKVEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTARHIIIKMAKVSDKERILKAARENQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKVYTATQNPG", "length": 288, "header": "tr|A0A5G2QK70-1|A0A5G2QK70_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QK70-1" }, "locus": { "chromosome": "1", "start_pos": 63601886, "end_pos": 63601023, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089310.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089310.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065487.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065487.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK70-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 288, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK70-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK70" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QK70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QK70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 285, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QK70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK70" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK81-1", "uniprot_ac": "A0A5G2QK81", "uniprot_id": "A0A5G2QK81_PIG", "mass": { "chemical_mass": 19481.0, "monoisotopic_mass": 19481.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QK81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK81", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050864", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050864", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QK81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANKHMKKCSTSLIIREMQIKTTMRYYLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECQLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFTRARTWKQPKCPSTEDWIRKRWYIYTMEYYSAIKKMTSCHLQQHGWS", "length": 161, "header": "tr|A0A5G2QK81-1|A0A5G2QK81_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK81-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81/entry", "sequence": { "sequence": "MANKHMKKCSTSLIIREMQIKTTMRYYLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECQLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFTRARTWKQPKCPSTEDWIRKRWYIYTMEYYSAIKKMTSCHLQQHGWS", "length": 161, "header": "tr|A0A5G2QK81-1|A0A5G2QK81_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK81-1" }, "locus": { "chromosome": "13", "start_pos": 108609337, "end_pos": 108608411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083406.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083406.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064918.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064918.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 161, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK81" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK94-1", "uniprot_ac": "A0A5G2QK94", "uniprot_id": "A0A5G2QK94_PIG", "mass": { "chemical_mass": 13311.0, "monoisotopic_mass": 13311.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QK94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK94", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046007", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046007", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QK94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNSSSMFSFLRNLHTAFHSGCTNLQSHQQCTRVPFSPHPLQHLLFVDFLMMAILAGVRWYLRVVLTCVSLIMSDVEHLFMCFLAIRMSSLENCLFRSSAHFSMGLFVFF", "length": 117, "header": "tr|A0A5G2QK94-1|A0A5G2QK94_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK94-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94/entry", "sequence": { "sequence": "MPRSGIAGSNSSSMFSFLRNLHTAFHSGCTNLQSHQQCTRVPFSPHPLQHLLFVDFLMMAILAGVRWYLRVVLTCVSLIMSDVEHLFMCFLAIRMSSLENCLFRSSAHFSMGLFVFF", "length": 117, "header": "tr|A0A5G2QK94-1|A0A5G2QK94_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK94-1" }, "locus": { "chromosome": "3", "start_pos": 98880788, "end_pos": 98880438, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071008.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071008.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064933.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064933.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 117, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK96-1", "uniprot_ac": "A0A5G2QK96", "uniprot_id": "A0A5G2QK96_PIG", "mass": { "chemical_mass": 19061.0, "monoisotopic_mass": 19061.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK96", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047218", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047218", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QK96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILAGVRWYLIVVLICISLIMSDVEHLFMCFLAICISSLENCLFRSSAHFLMGLFGFFGMELQKVFIILEINPLSVDSLAKIFSHSVSCLFILFRVSFAVQKLLSLIRSHLFIFVFVVNTLMGGSEKMLLSFTSESVWPMFSSRSLIVSGLISRSVNPFGVDFCVWC", "length": 169, "header": "tr|A0A5G2QK96-1|A0A5G2QK96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK96-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96/entry", "sequence": { "sequence": "MMAILAGVRWYLIVVLICISLIMSDVEHLFMCFLAICISSLENCLFRSSAHFLMGLFGFFGMELQKVFIILEINPLSVDSLAKIFSHSVSCLFILFRVSFAVQKLLSLIRSHLFIFVFVVNTLMGGSEKMLLSFTSESVWPMFSSRSLIVSGLISRSVNPFGVDFCVWC", "length": 169, "header": "tr|A0A5G2QK96-1|A0A5G2QK96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QK96-1" }, "locus": { "chromosome": "10", "start_pos": 36993677, "end_pos": 36993171, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070285.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070285.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064408.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064408.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK96" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QK97-1", "uniprot_ac": "A0A5G2QK97", "uniprot_id": "A0A5G2QK97_PIG", "mass": { "chemical_mass": 114130.0, "monoisotopic_mass": 114130.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110255782", "type": "recommended", "evidence": [ { "id": "A0A5G2QK97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QK97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255782", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97", "locus": {} } ], "crossref": [ { "id": "A0A5G2QK97", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK97", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048674", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048674", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR053330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37000", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37000", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37000:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37000:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QK97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPQVTVRLPVVHTMPPPPTTPQRANGPHDHRDQGWCLGGEGVCGDTGVPPPTTAGPTQQGLWPEPTPVPPRGAAHGGPGIPKVVVPKAGVSEAGVLKAGVPKAGVLKAGVPKASVSEAGVPKASVSEAGVPKVSVPKASVCEESVPKAGILKASVSEAGVSEVSVPKAGVSVEGVPKAGVPEAGVLKAGVPKAGISEAGVPKASVSEAGVLKAGVPKTSVSEAGVPKAGVSEASVPKAGVPKVGVSEAGVPKAGVSEASVPKAGVPKVGVSEAGVSKAAVPKVGVSEAGVSKAGVPKVGVSEAGVSKAGAPKAGVSEASVPKAGIFAAGVPKTGVPEAGVSKAGVPKAGVTKAGVSEAGVPKAGVPKAIVSEAGVLEAGVPRVGASEAGVSKAGVPKASISKAGVPKAGVSEVGVSKASISEAGVPKTSISKAGVPKAGVPKASVSEAGVPKAGVSEAGVSKASISEAGVLKAGVPKTNLSKAGVSEAGVPKAGVPKADISEAGVPKARVSEAGVPKAGVPKTNLSKAGVSEAGVPKTAVPEAVPPGKPQRCGPGGQETKGSPGVSLKLQKHEDIWGQDASQLSSEAWLPERLDRWARDARTPPHHSEPSESQQRGLASCAPGGQQAPVPEAPSREHQTDIPTWPASPAKGRMKPEGLASADKSPLHEQGRHRGPLSSPESTWPLLAAEGSASHDLGENRVTSLNERPKPSVRAPGQAAAAKAPQGPPAPATGNTLRPQDRAAEERASRQEVGRGVQPPGPALVAKEPAGLPRGHPTCRASGSLPSPRQEALGAPGLPVEPPVPASGEWAAGKTKGPTGGGTVGAMKWSPSGGSPEPPTPAWDGPAPQGGHAWGARPRPLENQQAEGGARPLSAEQPPLGAGPSRQPPPMCTAAGGQRVDGAAQEHPDLRAPGEVTAGHRQLPGADLGSRGSPRGREQGGRGPVSLDSPGRRGEAAWRQKAGWGCSPRRGHQPAHWERPRAPRGAAGEGHRGPSPGARTLGPGCSEPSSSLSGSPAGWAQAPPSRVVPLDLAQPTGGSAEVAPAIGKSGVSQRPDPRGGQCGPGKPRGKGESLTAPSPQPGQGPTAPLTPAQERPPDPARAGTGTRGRGHGARAAHLAKYRAQSFSDQRSFELSFRPMVIRANDTFALPK", "length": 1152, "header": "tr|A0A5G2QK97-1|A0A5G2QK97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255782 PE=4 SV=1 CANONICAL=A0A5G2QK97-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97/entry", "sequence": { "sequence": "MEPPQVTVRLPVVHTMPPPPTTPQRANGPHDHRDQGWCLGGEGVCGDTGVPPPTTAGPTQQGLWPEPTPVPPRGAAHGGPGIPKVVVPKAGVSEAGVLKAGVPKAGVLKAGVPKASVSEAGVPKASVSEAGVPKVSVPKASVCEESVPKAGILKASVSEAGVSEVSVPKAGVSVEGVPKAGVPEAGVLKAGVPKAGISEAGVPKASVSEAGVLKAGVPKTSVSEAGVPKAGVSEASVPKAGVPKVGVSEAGVPKAGVSEASVPKAGVPKVGVSEAGVSKAAVPKVGVSEAGVSKAGVPKVGVSEAGVSKAGAPKAGVSEASVPKAGIFAAGVPKTGVPEAGVSKAGVPKAGVTKAGVSEAGVPKAGVPKAIVSEAGVLEAGVPRVGASEAGVSKAGVPKASISKAGVPKAGVSEVGVSKASISEAGVPKTSISKAGVPKAGVPKASVSEAGVPKAGVSEAGVSKASISEAGVLKAGVPKTNLSKAGVSEAGVPKAGVPKADISEAGVPKARVSEAGVPKAGVPKTNLSKAGVSEAGVPKTAVPEAVPPGKPQRCGPGGQETKGSPGVSLKLQKHEDIWGQDASQLSSEAWLPERLDRWARDARTPPHHSEPSESQQRGLASCAPGGQQAPVPEAPSREHQTDIPTWPASPAKGRMKPEGLASADKSPLHEQGRHRGPLSSPESTWPLLAAEGSASHDLGENRVTSLNERPKPSVRAPGQAAAAKAPQGPPAPATGNTLRPQDRAAEERASRQEVGRGVQPPGPALVAKEPAGLPRGHPTCRASGSLPSPRQEALGAPGLPVEPPVPASGEWAAGKTKGPTGGGTVGAMKWSPSGGSPEPPTPAWDGPAPQGGHAWGARPRPLENQQAEGGARPLSAEQPPLGAGPSRQPPPMCTAAGGQRVDGAAQEHPDLRAPGEVTAGHRQLPGADLGSRGSPRGREQGGRGPVSLDSPGRRGEAAWRQKAGWGCSPRRGHQPAHWERPRAPRGAAGEGHRGPSPGARTLGPGCSEPSSSLSGSPAGWAQAPPSRVVPLDLAQPTGGSAEVAPAIGKSGVSQRPDPRGGQCGPGKPRGKGESLTAPSPQPGQGPTAPLTPAQERPPDPARAGTGTRGRGHGARAAHLAKYRAQSFSDQRSFELSFRPMVIRANDTFALPK", "length": 1152, "header": "tr|A0A5G2QK97-1|A0A5G2QK97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255782 PE=4 SV=1 CANONICAL=A0A5G2QK97-1" }, "locus": { "chromosome": "11", "start_pos": 78654006, "end_pos": 78650513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086090.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086090.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062487.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062487.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1087, "start_aa": "Thr", "end_pos": 1087, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1087", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 54, "start_aa": "Thr", "end_pos": 54, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr54", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 68, "start_aa": "Thr", "end_pos": 68, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr68", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 820, "start_aa": "Thr", "end_pos": 820, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr820", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 841, "start_aa": "Thr", "end_pos": 841, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr841", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1145, "end_pos": 1147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QK97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1152, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QK97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QK97" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21, 54, 68, 820, 841, 1087 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1145, "end_pos": 1147 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 526, "end_pos": 528 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKD6-1", "uniprot_ac": "A0A5G2QKD6", "uniprot_id": "A0A5G2QKD6_PIG", "mass": { "chemical_mass": 46363.0, "monoisotopic_mass": 46363.0 }, "refseq": {}, "gene_names": [ { "name": "ACOT6", "type": "recommended", "evidence": [ { "id": "A0A5G2QKD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ] } ], "protein_names": [ { "name": "Acyl-CoA thioesterase 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QKD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACOT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6", "locus": { "chromosome": "7", "start_pos": 96992873, "end_pos": 96984716, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002348", "url": "https://www.ensembl.org/id/ENSSSCG00000002348" } ] } } ], "crossref": [ { "id": "A0A5G2QKD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002348", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002348", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042490", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042490", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10824:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10824:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATVTLEPAGRCCWDEPVRIAVRGLAPEQPVTLRASLRDEKGALFRAHARYCADADGQLDLARAPALGGSFVGLEPMGLFWALEPEKPLLRLVKRDVQTPFAVELEVFDGHEPEGGRLLGRAVHERDFLAPGVRREPVRAGRVRATLFLPSGPFPGIIDLFGSGGGLCEYRASLLAGRGFAVLALAYFRFEDLPEYLNDVSLDYFEEAVDFMLQHSKVKGPSVGLLGFSKGGDLCLSMASFLKGITATVVINACVANTIAPLRYKDMIIPHLSSDPWKYTINESGFLNLMDIWNNPLEKPNQQSLIPLEKAQGPFLFIVGMDDHNWKSEFYAHVASERLQAHGKDRPQIIYYPGTGHCIDPPYFPLCRASVHAVLDQPIFYGGEPKAHSRAQVDAWQQIQTFFHKHLNGKKSVKPSKL", "length": 419, "header": "tr|A0A5G2QKD6-1|A0A5G2QKD6_PIG Isoform 1 of Acyl-CoA thioesterase 6 OS=Sus scrofa OX=9823 GN=ACOT6 PE=3 SV=2 CANONICAL=A0A5G2QKD6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6/entry", "sequence": { "sequence": "MAATVTLEPAGRCCWDEPVRIAVRGLAPEQPVTLRASLRDEKGALFRAHARYCADADGQLDLARAPALGGSFVGLEPMGLFWALEPEKPLLRLVKRDVQTPFAVELEVFDGHEPEGGRLLGRAVHERDFLAPGVRREPVRAGRVRATLFLPSGPFPGIIDLFGSGGGLCEYRASLLAGRGFAVLALAYFRFEDLPEYLNDVSLDYFEEAVDFMLQHSKVKGPSVGLLGFSKGGDLCLSMASFLKGITATVVINACVANTIAPLRYKDMIIPHLSSDPWKYTINESGFLNLMDIWNNPLEKPNQQSLIPLEKAQGPFLFIVGMDDHNWKSEFYAHVASERLQAHGKDRPQIIYYPGTGHCIDPPYFPLCRASVHAVLDQPIFYGGEPKAHSRAQVDAWQQIQTFFHKHLNGKKSVKPSKL", "length": 419, "header": "tr|A0A5G2QKD6-1|A0A5G2QKD6_PIG Isoform 1 of Acyl-CoA thioesterase 6 OS=Sus scrofa OX=9823 GN=ACOT6 PE=3 SV=2 CANONICAL=A0A5G2QKD6-1" }, "locus": { "chromosome": "7", "start_pos": 96990342, "end_pos": 96984725, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071335.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071335.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064983.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064983.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "fatty acid metabolic process", "id": "GO:0006631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006631", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "pmid": "" }, { "name": "acyl-CoA metabolic process", "id": "GO:0006637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006637", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "fatty acyl-CoA hydrolase activity", "id": "GO:0047617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047617", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 419, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKD6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" }, { "id": "PF04775", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04775" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 140, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QKD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKD6" }, { "id": "PF08840", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAAT/Acyl-CoA thioester hydrolase C-terminal", "eco_id": "ECO_0000259", "start_pos": 201, "end_pos": 409, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 283, "end_pos": 285 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKE1-1", "uniprot_ac": "A0A5G2QKE1", "uniprot_id": "A0A5G2QKE1_PIG", "mass": { "chemical_mass": 92873.0, "monoisotopic_mass": 92873.0 }, "refseq": {}, "gene_names": [ { "name": "CATSPERE", "type": "recommended", "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ] } ], "protein_names": [ { "name": "Catsper channel auxiliary subunit epsilon", "type": "synonym", "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CATSPERE", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1", "locus": { "chromosome": "10", "start_pos": 17355061, "end_pos": 17282939, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035850", "url": "https://www.ensembl.org/id/ENSSSCG00000035850" } ] } } ], "crossref": [ { "id": "A0A5G2QKE1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKE1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035850", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035850", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR028751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33722:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33722:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22843", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22843", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22844", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22844", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22849", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22849", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22850", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22850", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "FATLGQKPTIQTFLERKVYFPHRQMKNGAWQITIPMNSDVLKEIEGNQVAFQDCFIADILFLLTTPLLTMPEIPGFLPISSPQGSQLIADWAACVPSSVVVVADMETFQTNNSFHTWTRIRVPPNILTDDERHSVSDVTLSEDGIFFLINDILYIKKFSAFTRLGEDVNLPNGGIIGITSRKWCWVKYLLKDKGRRSNMAVWTENEVYLGYTSLEFVKIITTEKLKELLNLSSAATLTIHNVEYTGHPLELAVLLNYCMTCNAIKKIYLAIYNEDTKQWVYQDFALDVTIDTFLIPHFIYSAMPELILQDKHRIYYYYHNFTDTGVVQTPTEFGNLSSLSHNSIIHDVFIDYYGNIMVKMENNVMFYFKINIKDALKLHLWTNSTIKSLISLNSSGQIYLIYVFENGTVHPQEYPLKLEAQSVTFNTKEKCPFMAFHNNIFGVFYFLDKGQNLTVWAQIVYLENIGLYIIVESYGPNILEKKDHVHYEIASGYCTKTMTITFSQNINYEAVDDYFKLQHENTGLLLVRVRPSDYAKTCPVAPKVFQIAVGCDAGKFIAVKGFNKKECLHYDFFYIIEKSYLRTRPSKHLRVQYNWEKYGCPLRVDFREKFHPLIQLYNENGYVEDVEVNFIVWEIHGRDDYSFNTTMKKSGCLNEAQTWKSMTKLNKHLPLEEAWGPENYKHCFSYAIGKPGDLNQPYEIINKSNHNHLVWPLDHSGMYVFRVKILDPNYSFCNLTTIFAIETFGMIPSPSAYLVAAFLFLLMLLFFTILVLSYFHYMRIYREYIYVPFYKSERKPKNN", "length": 799, "header": "tr|A0A5G2QKE1-1|A0A5G2QKE1_PIG Isoform 1 of Catsper channel auxiliary subunit epsilon OS=Sus scrofa OX=9823 GN=CATSPERE PE=3 SV=2 CANONICAL=A0A5G2QKE1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1/entry", "sequence": { "sequence": "FATLGQKPTIQTFLERKVYFPHRQMKNGAWQITIPMNSDVLKEIEGNQVAFQDCFIADILFLLTTPLLTMPEIPGFLPISSPQGSQLIADWAACVPSSVVVVADMETFQTNNSFHTWTRIRVPPNILTDDERHSVSDVTLSEDGIFFLINDILYIKKFSAFTRLGEDVNLPNGGIIGITSRKWCWVKYLLKDKGRRSNMAVWTENEVYLGYTSLEFVKIITTEKLKELLNLSSAATLTIHNVEYTGHPLELAVLLNYCMTCNAIKKIYLAIYNEDTKQWVYQDFALDVTIDTFLIPHFIYSAMPELILQDKHRIYYYYHNFTDTGVVQTPTEFGNLSSLSHNSIIHDVFIDYYGNIMVKMENNVMFYFKINIKDALKLHLWTNSTIKSLISLNSSGQIYLIYVFENGTVHPQEYPLKLEAQSVTFNTKEKCPFMAFHNNIFGVFYFLDKGQNLTVWAQIVYLENIGLYIIVESYGPNILEKKDHVHYEIASGYCTKTMTITFSQNINYEAVDDYFKLQHENTGLLLVRVRPSDYAKTCPVAPKVFQIAVGCDAGKFIAVKGFNKKECLHYDFFYIIEKSYLRTRPSKHLRVQYNWEKYGCPLRVDFREKFHPLIQLYNENGYVEDVEVNFIVWEIHGRDDYSFNTTMKKSGCLNEAQTWKSMTKLNKHLPLEEAWGPENYKHCFSYAIGKPGDLNQPYEIINKSNHNHLVWPLDHSGMYVFRVKILDPNYSFCNLTTIFAIETFGMIPSPSAYLVAAFLFLLMLLFFTILVLSYFHYMRIYREYIYVPFYKSERKPKNN", "length": 799, "header": "tr|A0A5G2QKE1-1|A0A5G2QKE1_PIG Isoform 1 of Catsper channel auxiliary subunit epsilon OS=Sus scrofa OX=9823 GN=CATSPERE PE=3 SV=2 CANONICAL=A0A5G2QKE1-1" }, "locus": { "chromosome": "10", "start_pos": 17354864, "end_pos": 17292963, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078398.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078398.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065289.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065289.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" }, { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" }, { "name": "sperm capacitation", "id": "GO:0048240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048240", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 644, "end_pos": 646, "annotation": "n_glycosylation_sequon" }, { "start_pos": 702, "end_pos": 704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 729, "end_pos": 731, "annotation": "n_glycosylation_sequon" }, { "start_pos": 734, "end_pos": 736, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKE1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 799, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKE1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKE1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" }, { "id": "PF22850", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERD/E C-terminal", "eco_id": "ECO_0000259", "start_pos": 577, "end_pos": 774, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" }, { "id": "PF22849", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22849" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERE Ig-like", "eco_id": "ECO_0000259", "start_pos": 435, "end_pos": 545, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" }, { "id": "PF22844", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22844" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERE beta-propeller", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 425, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QKE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKE1" }, { "id": "PF22843", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22843" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERE second N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 35, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 320, "end_pos": 322 }, { "start_pos": 335, "end_pos": 337 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 393, "end_pos": 395 }, { "start_pos": 406, "end_pos": 408 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 644, "end_pos": 646 }, { "start_pos": 702, "end_pos": 704 }, { "start_pos": 729, "end_pos": 731 }, { "start_pos": 734, "end_pos": 736 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKH6-1", "uniprot_ac": "A0A5G2QKH6", "uniprot_id": "A0A5G2QKH6_PIG", "mass": { "chemical_mass": 14155.0, "monoisotopic_mass": 14155.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QKH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKH6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKH6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTGARWYLIVVLICISLIIIDVEDLSMYLLAICISSLEKCLFRSFAHFSIGLLAFLLLSCLSCLYILEIKPLSVASFETIFSYFVCDLFGFFLRLSFAVQKLVSLIMSHCLIFAFISVALGD", "length": 126, "header": "tr|A0A5G2QKH6-1|A0A5G2QKH6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKH6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6/entry", "sequence": { "sequence": "MMAILTGARWYLIVVLICISLIIIDVEDLSMYLLAICISSLEKCLFRSFAHFSIGLLAFLLLSCLSCLYILEIKPLSVASFETIFSYFVCDLFGFFLRLSFAVQKLVSLIMSHCLIFAFISVALGD", "length": 126, "header": "tr|A0A5G2QKH6-1|A0A5G2QKH6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKH6-1" }, "locus": { "chromosome": "1", "start_pos": 179982195, "end_pos": 179981818, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080908.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080908.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065028.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065028.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 126, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKH6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKP2-1", "uniprot_ac": "A0A5G2QKP2", "uniprot_id": "A0A5G2QKP2_PIG", "mass": { "chemical_mass": 13890.0, "monoisotopic_mass": 13890.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QKP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKP2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045061", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045061", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19433", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19433", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19433:SF132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19433:SF132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLVTGVTVFLTLGTMIDAQTTQPNSKDCAEGEDVKLPCNHSTISGADYIHWNRQNPNQSPQYIIHGLQSNVTNSMASLTIASDRKSSTLVLPRVTLRDTAVYYCILRDPQWDRWGCTCTVSLW", "length": 124, "header": "tr|A0A5G2QKP2-1|A0A5G2QKP2_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKP2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2/entry", "sequence": { "sequence": "MRLVTGVTVFLTLGTMIDAQTTQPNSKDCAEGEDVKLPCNHSTISGADYIHWNRQNPNQSPQYIIHGLQSNVTNSMASLTIASDRKSSTLVLPRVTLRDTAVYYCILRDPQWDRWGCTCTVSLW", "length": 124, "header": "tr|A0A5G2QKP2-1|A0A5G2QKP2_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKP2-1" }, "locus": { "chromosome": "7", "start_pos": 77182824, "end_pos": 77182028, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086980.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086980.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064559.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064559.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "response to bacterium", "id": "GO:0009617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009617", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKP2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKP2" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 105, "start_aa": "Glu", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 58, "end_pos": 60 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKQ6-1", "uniprot_ac": "A0A5G2QKQ6", "uniprot_id": "A0A5G2QKQ6_PIG", "mass": { "chemical_mass": 148772.0, "monoisotopic_mass": 148772.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QKQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QKQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKQ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051392", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051392", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QKQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNNNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYDQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRLDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNSKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QKQ6-1|A0A5G2QKQ6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKQ6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNNNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYDQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRLDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNSKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QKQ6-1|A0A5G2QKQ6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKQ6-1" }, "locus": { "chromosome": "1", "start_pos": 249100082, "end_pos": 249096267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073389.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073389.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065113.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065113.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKQ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKQ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKQ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKQ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKQ6" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKR1-1", "uniprot_ac": "A0A5G2QKR1", "uniprot_id": "A0A5G2QKR1_PIG", "mass": { "chemical_mass": 22350.0, "monoisotopic_mass": 22350.0 }, "refseq": { "ac": "XP_020937740", "name": "uncharacterized protein LOC110255302 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937740" }, "gene_names": [ { "name": "LOC110255302", "type": "recommended", "evidence": [ { "id": "A0A5G2QKR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ] }, { "name": "LOC110255302", "type": "synonym", "evidence": [ { "id": "XP_020937740", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937740" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QKR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC110255302 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020937740", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937740" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255302", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKR1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255302", "url": "https://www.ncbi.nlm.nih.gov/gene/110255302", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255302", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255302", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QKR1", "url": "https://www.orthodb.org/?gene=A0A5G2QKR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13600", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13600", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13600:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13600:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020937740", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937740", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSLRRPSFTACSSSLLDADDEGMRGPCEDASLCKRFAVSIGYWQDPCIPHLVRLSKARKAPKINRGYFARVQRQSAYQGISTEDRMQLSNSKPWGWDGYHLLEVKGCGSSTKYILESQCSSDHHEEAAQHQVYKHYHLTKYVSTWTHTHARTHARTKDTTKYFRVHSYTGDPKEKLFLHAPKEKISTYLSPTH", "length": 195, "header": "tr|A0A5G2QKR1-1|A0A5G2QKR1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255302 PE=4 SV=1 CANONICAL=A0A5G2QKR1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1/entry", "sequence": { "sequence": "MATSLRRPSFTACSSSLLDADDEGMRGPCEDASLCKRFAVSIGYWQDPCIPHLVRLSKARKAPKINRGYFARVQRQSAYQGISTEDRMQLSNSKPWGWDGYHLLEVKGCGSSTKYILESQCSSDHHEEAAQHQVYKHYHLTKYVSTWTHTHARTHARTKDTTKYFRVHSYTGDPKEKLFLHAPKEKISTYLSPTH", "length": 195, "header": "tr|A0A5G2QKR1-1|A0A5G2QKR1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255302 PE=4 SV=1 CANONICAL=A0A5G2QKR1-1" }, "locus": { "chromosome": "AEMK02000156.1", "start_pos": 98543, "end_pos": 63814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071514.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071514.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065118.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255302", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255302", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of mitotic cell cycle spindle assembly checkpoint", "id": "GO:0090266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090266", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein C-terminal leucine carboxyl O-methyltransferase activity", "id": "GO:0018423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018423", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKR1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 195, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKR1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKR1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKU3-1", "uniprot_ac": "A0A5G2QKU3", "uniprot_id": "A0A5G2QKU3_PIG", "mass": { "chemical_mass": 57181.0, "monoisotopic_mass": 57181.0 }, "refseq": {}, "gene_names": [ { "name": "FAM50A", "type": "recommended", "evidence": [ { "id": "A0A5G2QKU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 50 member A", "type": "synonym", "evidence": [ { "id": "A0A5G2QKU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM50A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3", "locus": { "chromosome": "X", "start_pos": 124973483, "end_pos": 124967510, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025303", "url": "https://www.ensembl.org/id/ENSSSCG00000025303" } ] } } ], "crossref": [ { "id": "A0A5G2QKU3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025303", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025303", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623080", "url": "https://www.ncbi.nlm.nih.gov/gene/100623080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12722:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12722:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZQD9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL51", "url": "https://www.uniprot.org/uniprotkb/I3LL51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL51-1", "url": "https://www.uniprot.org/uniprotkb/I3LL51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEVEGPRAQPWDQEEEVEMGTQPQVQGLLLGELRGNQRPRAGPRPSKAGGAGPSAGRGGWRGAGRGRALLGGDVTARRRRQLTALPPLAPPPLPPPPPPLPPPQPVRLGQAAVVFAAAMAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSLSFTLEEEEEAGEEEEAVAVEEEELEREEVTTKKRKLGKNPDVDTSFLPDRDREVKGPVGALHRLPCELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTVGRPRGPGAGAPLCGDAAQLACPPLSPRSPRSDDPGPQLRQLPAPET", "length": 508, "header": "tr|A0A5G2QKU3-1|A0A5G2QKU3_PIG Isoform 1 of Family with sequence similarity 50 member A OS=Sus scrofa OX=9823 GN=FAM50A PE=1 SV=2 CANONICAL=A0A5G2QKU3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD9/entry", "sequence": { "sequence": "MEEVEGPRAQPWDQEEEVEMGTQPQVQGLLLGELRGNQRPRAGPRPSKAGGAGPSAGRGGWRGAGRGRALLGGDVTARRRRQLTALPPLAPPPLPPPPPPLPPPQPVRLGQAAVVFAAAMAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSLSFTLEEEEEAGEEEEAVAVEEEELEREEVTTKKRKLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTVGRPRGPGAGAPLCGDAAQLACPPLSPRSPRSDDPGPQLRQLPAPET", "length": 503, "header": "tr|A0A286ZQD9-1|A0A286ZQD9_PIG Computationally mapped isoform of Family with sequence similarity 50 member A OS=Sus scrofa OX=9823 GN=FAM50A PE=1 SV=2 CANONICAL=A0A5G2QKU3-1" }, "locus": { "chromosome": "X", "start_pos": 124973149, "end_pos": 124967593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080547.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080547.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061133.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061133.2" } ] } }, { "isoform_ac": "A0A5G2QKU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3/entry", "sequence": { "sequence": "MEEVEGPRAQPWDQEEEVEMGTQPQVQGLLLGELRGNQRPRAGPRPSKAGGAGPSAGRGGWRGAGRGRALLGGDVTARRRRQLTALPPLAPPPLPPPPPPLPPPQPVRLGQAAVVFAAAMAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSLSFTLEEEEEAGEEEEAVAVEEEELEREEVTTKKRKLGKNPDVDTSFLPDRDREVKGPVGALHRLPCELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTVGRPRGPGAGAPLCGDAAQLACPPLSPRSPRSDDPGPQLRQLPAPET", "length": 508, "header": "tr|A0A5G2QKU3-1|A0A5G2QKU3_PIG Isoform 1 of Family with sequence similarity 50 member A OS=Sus scrofa OX=9823 GN=FAM50A PE=1 SV=2 CANONICAL=A0A5G2QKU3-1" }, "locus": { "chromosome": "X", "start_pos": 124973149, "end_pos": 124967593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089389.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089389.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064609.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064609.2" } ] } }, { "isoform_ac": "I3LL51-1", "url": "https://www.uniprot.org/uniprotkb/I3LL51/entry", "sequence": { "sequence": "MKSNIDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSLSFTLEEEEEAGEEEEAVAVEEEELEREEVTTKKRKLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR", "length": 299, "header": "tr|I3LL51-1|I3LL51_PIG Computationally mapped isoform of Family with sequence similarity 50 member A OS=Sus scrofa OX=9823 GN=FAM50A PE=1 SV=2 CANONICAL=A0A5G2QKU3-1" }, "locus": { "chromosome": "X", "start_pos": 124973106, "end_pos": 124969279, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028600.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028600.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024818.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024818.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "pmid": "" }, { "name": "regulation of RNA splicing", "id": "GO:0043484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043484", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 508, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKU3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU3" }, { "id": "PF04921", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04921" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM50A/XAP5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 321, "end_pos": 461, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKV1-1", "uniprot_ac": "A0A5G2QKV1", "uniprot_id": "A0A5G2QKV1_PIG", "mass": { "chemical_mass": 17329.0, "monoisotopic_mass": 17329.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QKV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKV1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050713", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050713", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QKV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRHLPPVFHSGCTNLQSHQQCTRVPFSPHPLQHLLFVDFWMMAILAGVRWYLIVVLICVSLIMCDVEHLFMCFSAICMSSLENCLFRSSAHFLMGFVFFGMELQKVFINFGDESLVSHFICKYFLPFCGLSFCFV", "length": 152, "header": "tr|A0A5G2QKV1-1|A0A5G2QKV1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKV1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1/entry", "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRHLPPVFHSGCTNLQSHQQCTRVPFSPHPLQHLLFVDFWMMAILAGVRWYLIVVLICVSLIMCDVEHLFMCFSAICMSSLENCLFRSSAHFLMGFVFFGMELQKVFINFGDESLVSHFICKYFLPFCGLSFCFV", "length": 152, "header": "tr|A0A5G2QKV1-1|A0A5G2QKV1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QKV1-1" }, "locus": { "chromosome": "10", "start_pos": 6856428, "end_pos": 6855973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091089.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091089.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062698.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062698.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKV1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 152, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKV1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKV1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKX2-1", "uniprot_ac": "A0A5G2QKX2", "uniprot_id": "A0A5G2QKX2_PIG", "mass": { "chemical_mass": 36656.0, "monoisotopic_mass": 36656.0 }, "refseq": {}, "gene_names": [ { "name": "ANKRD2", "type": "recommended", "evidence": [ { "id": "A0A5G2QKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2/entry#names_and_taxonomy" } ] }, { "name": "Skeletal muscle ankyrin repeat protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Functions as a negative regulator of myocyte differentiation. May interact with both sarcoplasmic structural proteins and nuclear proteins to regulate gene expression during muscle development and in response to muscle stress.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2#function" }, { "database": "UniProtKB", "id": "ARBA00057443", "url": "https://www.uniprot.org/uniprotkb/ARBA00057443#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2", "locus": { "chromosome": "14", "start_pos": 108958387, "end_pos": 108944772, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010522", "url": "https://www.ensembl.org/id/ENSSSCG00000010522" } ] } } ], "crossref": [ { "id": "A0A5G2QKX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010522", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010522", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MMAKNEA", "url": "https://omabrowser.org/oma/group/MMAKNEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24126", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24126", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24126:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24126:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B5S6", "url": "https://www.uniprot.org/uniprotkb/A0A287B5S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8Y0", "url": "https://www.uniprot.org/uniprotkb/F1S8Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8Y0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSEAVQRATALIEERLAQEEENEKLRGATHQKLPMEMLKLEDEKHHRPQSPDLQKVKGQERVRKTSLDLRREIIDVGGIQNLIQLRKKRKQKKREALAASQEPPPEPEEITGPVDEETFLKAAVEGKMKVIEKFLADGGSPDTCDQFRRTALHRASLEGHMEILEKLLESGATVDFQDRLDCTAMHWACRGGHLEVVKLLQSRGADTSVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMTKNLAGKTPTDLVQLWQADTRHALEHPEPESEQNGLEGSGSGRATPQPVPAQ", "length": 328, "header": "tr|A0A5G2QKX2-1|A0A5G2QKX2_PIG Isoform 1 of Ankyrin repeat domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ANKRD2 PE=1 SV=2 CANONICAL=A0A5G2QKX2-1" }, "isoforms": [ { "isoform_ac": "A0A287B5S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5S6/entry", "sequence": { "sequence": "MASSEAVQRATALIEERLAQEEENEKLRGATHQKLPMEMLKLEDEKHHRPQSPDLQKVKGQERVRKTSLDLRREIIDVGGIQNLIQLRKKRKQKKREALAASQEPPPEPEEITGPVDEETFLKAAVEGKMKVIEKFLADGGSPDTCDQFRRTALHRASLEGHMEILEKLLESGATVDFQDRLDCTAMHWACRGGHLEVVKLLQSRGADTSVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMTKNLVSSFLP", "length": 286, "header": "tr|A0A287B5S6-1|A0A287B5S6_PIG Computationally mapped isoform of Ankyrin repeat domain 2 OS=Sus scrofa OX=9823 GN=ANKRD2 PE=1 SV=1 CANONICAL=A0A5G2QKX2-1" }, "locus": { "chromosome": "14", "start_pos": 108956287, "end_pos": 108944811, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106085.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106085.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080515.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080515.1" } ] } }, { "isoform_ac": "A0A5G2QKX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2/entry", "sequence": { "sequence": "MASSEAVQRATALIEERLAQEEENEKLRGATHQKLPMEMLKLEDEKHHRPQSPDLQKVKGQERVRKTSLDLRREIIDVGGIQNLIQLRKKRKQKKREALAASQEPPPEPEEITGPVDEETFLKAAVEGKMKVIEKFLADGGSPDTCDQFRRTALHRASLEGHMEILEKLLESGATVDFQDRLDCTAMHWACRGGHLEVVKLLQSRGADTSVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMTKNLAGKTPTDLVQLWQADTRHALEHPEPESEQNGLEGSGSGRATPQPVPAQ", "length": 328, "header": "tr|A0A5G2QKX2-1|A0A5G2QKX2_PIG Isoform 1 of Ankyrin repeat domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ANKRD2 PE=1 SV=2 CANONICAL=A0A5G2QKX2-1" }, "locus": { "chromosome": "14", "start_pos": 108958234, "end_pos": 108944811, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075324.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075324.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064644.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064644.2" } ] } }, { "isoform_ac": "F1S8Y0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Y0/entry", "sequence": { "sequence": "DGTMASSEAVQRATALIEERLAQEEENEKLRGATHQKLPMEMLKLEDEKHHRPQSPDLQKVKGQERVRKTSLDLRREIIDVGGIQNLIQLRKKRKQKKREALAASQEPPPEPEEITGPVDEETFLKAAVEGKMKVIEKFLADGGSPDTCDQFRRTALHRASLEGHMEILEKLLESGATVDFQDRLDCTAMHWACRGGHLEVVKLLQSRGADTSVRDKEGDSALHDAVRLNRYKIIKLLLLHGADMMTKNLAGKTPTDLVQLWQADTRHALEHPEPESEQNGLEGSGSGRATPQPVPAQ", "length": 298, "header": "tr|F1S8Y0-1|F1S8Y0_PIG Computationally mapped isoform of Ankyrin repeat domain 2 OS=Sus scrofa OX=9823 GN=ANKRD2 PE=1 SV=4 CANONICAL=A0A5G2QKX2-1" }, "locus": { "chromosome": "14", "start_pos": 108958234, "end_pos": 108944802, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011512.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011512.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011211.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011211.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A2R5-1", "protein_name": "Ankyrin repeat domain-containing protein 2", "gene_name": "Ankrd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGTMEGPEAVQRATELIEQRLAEEEETEKLRRATPGKTSMDMLVLEDEKRLGVQSPALQKVKGQERVRKTSLDLRREIIDVGGIQNLIELRKKRKQKKRDALAAAQEPPPEPEEITGPVDEETFLKAAVEGKIKVIDKYLADGGSADTCDEFRRTALHRASLEGHMEILEKLLENGATVDFQDRLDCTAMHWACRGGHLEVVKLLQSRGANTDVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMAKNMAGKTPTDLVQLWQADTRHALEHPEPESEQNGLERPGSGRETPQPVPAQ", "length": 332 }, "evidence": [ { "id": "A0A5G2QKX2", "url": "https://omabrowser.org/oma/group/A0A5G2QKX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9WV06-1", "protein_name": "Ankyrin repeat domain-containing protein 2", "gene_name": "Ankrd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGPEAVQRATELIEQRLAQEEETEKLRRSAPGKLSMDMLVLEEEKRLGVQSPALQKVKGQERVRKTSLDLRREIIDVGGIQNLIELRKKRKQKKRDALAAAQEPPPEPEEITGPVNEETFLKAAVEGKMKVIDKYLADGGSADTCDEFRRTALHRASLEGHMEILEKLLENGATVDFQDRLDCTAMHWACRGGHLEVVRLLQSRGADTNVRDKLLSTPLHVAVRTGHVEIVEHFLSLGLDINAKDREGDSALHDAVRLNRYKIIKLLLLHGADMMAKNLAGKTPTDLVQLWQADTRHALEHPEPESEQNGLERPGSGRETPQPIPAQ", "length": 328 }, "evidence": [ { "id": "A0A5G2QKX2", "url": "https://omabrowser.org/oma/group/A0A5G2QKX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" }, { "name": "I band", "id": "GO:0031674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" }, { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" }, { "name": "negative regulation of myoblast differentiation", "id": "GO:0045662", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045662", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase B binding", "id": "GO:0043422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043422", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKX2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 328, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKX2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKX2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKX6-1", "uniprot_ac": "A0A5G2QKX6", "uniprot_id": "A0A5G2QKX6_PIG", "mass": { "chemical_mass": 22890.0, "monoisotopic_mass": 22890.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Cleavage and polyadenylation specificity factor subunit 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QKX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKX6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046182", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046182", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10644", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10644", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSISLLRYQEESKTLSLVSRVLGGPPVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRVTAHF", "length": 200, "header": "tr|A0A5G2QKX6-1|A0A5G2QKX6_PIG Isoform 1 of Cleavage and polyadenylation specificity factor subunit 1 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QKX6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6/entry", "sequence": { "sequence": "MKSISLLRYQEESKTLSLVSRVLGGPPVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRVTAHF", "length": 200, "header": "tr|A0A5G2QKX6-1|A0A5G2QKX6_PIG Isoform 1 of Cleavage and polyadenylation specificity factor subunit 1 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QKX6-1" }, "locus": { "chromosome": "4", "start_pos": 393657, "end_pos": 392540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088790.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088790.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065195.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065195.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA 3'-end processing", "id": "GO:0031123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031123", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKX6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 200, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKX6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKX6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QKX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKX6" }, { "id": "PF03178", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RSE1/DDB1/CPSF1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 165, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QKZ2-1", "uniprot_ac": "A0A5G2QKZ2", "uniprot_id": "A0A5G2QKZ2_PIG", "mass": { "chemical_mass": 27930.0, "monoisotopic_mass": 27930.0 }, "refseq": { "ac": "XP_020944890", "name": "putative uncharacterized protein C8orf89 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944890" }, "gene_names": [ { "name": "C4H8orf89", "type": "recommended", "evidence": [ { "id": "A0A5G2QKZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2" } ] }, { "name": "C4H8orf89", "type": "synonym", "evidence": [ { "id": "XP_020944890", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944890" } ] }, { "name": "C8orf89", "type": "synonym", "evidence": [ { "id": "A0A5G2QKZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2" } ] } ], "protein_names": [ { "name": "Chromosome 4 C8orf89 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QKZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2/entry#names_and_taxonomy" } ] }, { "name": "putative uncharacterized protein C8orf89 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020944890", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944890" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C4H8orf89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QKZ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKZ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032228", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032228", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517709", "url": "https://www.ncbi.nlm.nih.gov/gene/100517709", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517709", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517709", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QKZ2", "url": "https://www.orthodb.org/?gene=A0A5G2QKZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF17690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944890", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944890", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A5R4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5R4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METIRQEWVSRNKNRRVPWWPSSISLSSALLKEEEKMPVLSPEIKFEPSNVTRNSIDSCFLFESSWRKAILETQKMRKEYTTAFGLEDFKECVKMPFLPGLQNCQKSVSSTPLDVHKRLLRADTEMPPVSHSSENMTSNLQVFYSPLHITQRPVKEQSWQSRIKKTKPTCTVTPLQEKSKGLLRHSNSSSINFGSGFSDPLAGAPSQYLQRLSRMAILEYDTIRQETTRKSKKGKKRELRDC", "length": 242, "header": "tr|A0A5G2QKZ2-1|A0A5G2QKZ2_PIG Isoform 1 of Chromosome 4 C8orf89 homolog OS=Sus scrofa OX=9823 GN=C4H8orf89 PE=4 SV=1 CANONICAL=A0A5G2QKZ2-1" }, "isoforms": [ { "isoform_ac": "A0A287A5R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5R4/entry", "sequence": { "sequence": "METIRQEWVSRNKNRRVPWWPSSISLSSALLKEEEKMPVLSPEIKFEPSNVTRNSIDSCFLFESSWRKAILETQKMRKEYTTAFGLEDFKECVKMPFLPGLQNCQKSVSSTPLDVHKRLLRADTEMPPVRLRLQ", "length": 134, "header": "tr|A0A287A5R4-1|A0A287A5R4_PIG Computationally mapped isoform of Chromosome 4 C8orf89 homolog OS=Sus scrofa OX=9823 GN=C4H8orf89 PE=4 SV=2 CANONICAL=A0A5G2QKZ2-1" }, "locus": { "chromosome": "4", "start_pos": 62641440, "end_pos": 62617211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039300.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039300.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039285.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039285.2" } ] } }, { "isoform_ac": "A0A5G2QKZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2/entry", "sequence": { "sequence": "METIRQEWVSRNKNRRVPWWPSSISLSSALLKEEEKMPVLSPEIKFEPSNVTRNSIDSCFLFESSWRKAILETQKMRKEYTTAFGLEDFKECVKMPFLPGLQNCQKSVSSTPLDVHKRLLRADTEMPPVSHSSENMTSNLQVFYSPLHITQRPVKEQSWQSRIKKTKPTCTVTPLQEKSKGLLRHSNSSSINFGSGFSDPLAGAPSQYLQRLSRMAILEYDTIRQETTRKSKKGKKRELRDC", "length": 242, "header": "tr|A0A5G2QKZ2-1|A0A5G2QKZ2_PIG Isoform 1 of Chromosome 4 C8orf89 homolog OS=Sus scrofa OX=9823 GN=C4H8orf89 PE=4 SV=1 CANONICAL=A0A5G2QKZ2-1" }, "locus": { "chromosome": "4", "start_pos": 62641573, "end_pos": 62617211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077109.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077109.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064669.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064669.1" } ] } }, { "isoform_ac": "A0A5G2QN53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN53/entry", "sequence": { "sequence": "METIRQEWVSRNKNRRVPWWPSSISLSSALLKEEEKMPVLSPEIKFEPSNVTRNSIDSCFLFESSWRKAILETQKMRKEYTTAFGLEDFKECVKMPFLPGLQNCQKSVSSTPLDVHKRLLRADTEMPPVRIKKTKPTCTVTPLQEKSKGSGFSDPLAGAPSQYLQRLSRMAILEYDTIRQETTRKSKKGKKRELRDC", "length": 197, "header": "tr|A0A5G2QN53-1|A0A5G2QN53_PIG Computationally mapped isoform of Chromosome 4 C8orf89 homolog OS=Sus scrofa OX=9823 GN=C4H8orf89 PE=4 SV=2 CANONICAL=A0A5G2QKZ2-1" }, "locus": { "chromosome": "4", "start_pos": 62641573, "end_pos": 62617211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073960.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073960.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066322.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066322.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517709", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517709", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QKZ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 242, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QKZ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QKZ2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL02-1", "uniprot_ac": "A0A5G2QL02", "uniprot_id": "A0A5G2QL02_PIG", "mass": { "chemical_mass": 20427.0, "monoisotopic_mass": 20427.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QL02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000041090", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041090", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19367:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19367:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGRFRGKGLHTGPGASRGLGKDGGWQESRHIMISTGLKVTQDQSAVSRRMGEAVTLNCWYETSQSAYYLFWYKQPPSGEMNFLIHQYSSKQNKRDGRYSVNFQKAQNFISLTVSVLQLEDSAMYFCALRDLTVLEVIGKAEQKPQSSIRESPPAAGPKLICTPADPRQEVVVLWLLHLWSG", "length": 182, "header": "tr|A0A5G2QL02-1|A0A5G2QL02_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL02-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02/entry", "sequence": { "sequence": "MVGRFRGKGLHTGPGASRGLGKDGGWQESRHIMISTGLKVTQDQSAVSRRMGEAVTLNCWYETSQSAYYLFWYKQPPSGEMNFLIHQYSSKQNKRDGRYSVNFQKAQNFISLTVSVLQLEDSAMYFCALRDLTVLEVIGKAEQKPQSSIRESPPAAGPKLICTPADPRQEVVVLWLLHLWSG", "length": 182, "header": "tr|A0A5G2QL02-1|A0A5G2QL02_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL02-1" }, "locus": { "chromosome": "7", "start_pos": 77263992, "end_pos": 77263352, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069246.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069246.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062748.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062748.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "T cell receptor complex", "id": "GO:0042101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042101", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "pmid": "" }, { "name": "immunoglobulin complex", "id": "GO:0019814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019814", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QL02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL02" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 150, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL13-1", "uniprot_ac": "A0A5G2QL13", "uniprot_id": "A0A5G2QL13_PIG", "mass": { "chemical_mass": 14144.0, "monoisotopic_mass": 14144.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QL13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13", "locus": {} } ], "crossref": [ { "id": "A0A5G2QL13", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL13", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046105", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046105", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QL13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTIVRWYLIIVLICISLIISDVEHFFMCLLSICRSSLEKCLFRSSAHFLIRLFIFLPLSCTGCLCILEIKPSLVASFSPIPYVVFSFYFFMVSFAVQKIVSLIRTHLFIFVRMPLLFS", "length": 122, "header": "tr|A0A5G2QL13-1|A0A5G2QL13_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL13-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13/entry", "sequence": { "sequence": "MMAILTIVRWYLIIVLICISLIISDVEHFFMCLLSICRSSLEKCLFRSSAHFLIRLFIFLPLSCTGCLCILEIKPSLVASFSPIPYVVFSFYFFMVSFAVQKIVSLIRTHLFIFVRMPLLFS", "length": 122, "header": "tr|A0A5G2QL13-1|A0A5G2QL13_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL13-1" }, "locus": { "chromosome": "7", "start_pos": 77449085, "end_pos": 77448720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074092.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074092.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062758.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL13-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL13-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL13" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL31-1", "uniprot_ac": "A0A5G2QL31", "uniprot_id": "A0A5G2QL31_PIG", "mass": { "chemical_mass": 11824.0, "monoisotopic_mass": 11824.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100519366", "type": "recommended", "evidence": [ { "id": "A0A5G2QL31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ] } ], "protein_names": [ { "name": "Cytochrome c oxidase subunit 6B1", "type": "recommended", "evidence": [ { "id": "A0A5G2QL31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome c oxidase subunit VIb isoform 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QL31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100519366", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31", "locus": {} } ], "crossref": [ { "id": "A0A5G2QL31", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL31", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043977", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043977", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00926", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00926", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11387", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11387", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MITNLGGHIELPAASGASIAVSTMAEDIQTKIKNYQTAPFESHFPSQNQTRNCWQNYLDFHCCEKAMTAKGGDTSVCEWYQRVYKSLWVSAWHVHRAEGTFPGKI", "length": 105, "header": "tr|A0A5G2QL31-1|A0A5G2QL31_PIG Isoform 1 of Cytochrome c oxidase subunit 6B1 OS=Sus scrofa OX=9823 GN=LOC100519366 PE=4 SV=1 CANONICAL=A0A5G2QL31-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL31-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31/entry", "sequence": { "sequence": "MITNLGGHIELPAASGASIAVSTMAEDIQTKIKNYQTAPFESHFPSQNQTRNCWQNYLDFHCCEKAMTAKGGDTSVCEWYQRVYKSLWVSAWHVHRAEGTFPGKI", "length": 105, "header": "tr|A0A5G2QL31-1|A0A5G2QL31_PIG Isoform 1 of Cytochrome c oxidase subunit 6B1 OS=Sus scrofa OX=9823 GN=LOC100519366 PE=4 SV=1 CANONICAL=A0A5G2QL31-1" }, "locus": { "chromosome": "6", "start_pos": 32078717, "end_pos": 32078403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086478.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086478.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065260.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065260.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ], "pmid": "" }, { "name": "respiratory chain complex IV", "id": "GO:0045277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045277", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL31-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 105, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL31-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL31" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL50-1", "uniprot_ac": "A0A5G2QL50", "uniprot_id": "A0A5G2QL50_PIG", "mass": { "chemical_mass": 128308.0, "monoisotopic_mass": 128308.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF862", "type": "recommended", "evidence": [ { "id": "A0A5G2QL50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" } ] } ], "protein_names": [ { "name": "Zinc finger protein 862", "type": "synonym", "evidence": [ { "id": "A0A5G2QL50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF862", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50", "locus": { "chromosome": "18", "start_pos": 55874157, "end_pos": 55849196, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040257", "url": "https://www.ensembl.org/id/ENSSSCG00000040257" } ] } } ], "crossref": [ { "id": "A0A5G2QL50", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL50", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040257", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040257", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006580", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006580", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46880", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46880", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46880:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46880:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QL50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LAPVTFDDITVYLLQEEWMLLSQQQKEICGSDKLVAPLEPTLASSELFYKFEQGPEPWLANVQDQRNLLNCHPGKNKMGFVEETDLQKPARETGPYLPPEKKACLSHFSSESGSIEVDCTGKSRKPLKPRSIQKSWFVQFPWLVMNKEQTALFCSACREYPAVRDRRSRLIEGYTGPFKVETLKYHAKSKAHVFCVKALAARDPVWAARFPSIRDVSGDELADPGHLFTADYPTFYPPGLLGARDDLSQLLPSSRTALKDPGGNGAIPALYLDCISDFRQKEIAHDTRSSSVIDILCNDSAEPCDQDPSEEGPFEEVPVVFEDVAVYFTRDEWGTLDKRQKELYRDVMQMNYELLASLGPAAAKPDLISKLEQRAAPWIKDPHGPTWGKGRPPGKKKMVAVREAHTLASAVDSATLPASSRETRTSYCRPSLCEAEVGGRRKVKRTYRPRSIQRSWFGQFPWLVIDPKETRLFCSACRARPSLHDRSSRLVRGYTGPFKVETLKYHGVSKAHKLCVNTVEVKEDAPLAAPVPEISSDLMANMEHFFNAAYSIAYHSRPLNDFEKILQLLQSTGTMILGKYRNRTACTQFIKYISETLKKEILEDVRSSPCVSVLLDSTTDASEQSCVGIYLRYFKGLEVKESYLTLAPVYSETADGYFETIVSALDELDVPFRKPGWVVGLGTDGSALLSCRGGLVEKFQEVIPQLLPVHCVAHRLHLAVVDACGGIDLVKKCDRHIRTVFKFYQSSNKSLRELQEGAAPLEQEILRLKDLNAVRWVASRRRTLDALLVSWPALARHLQRVAEAGGQVGHRAKGLLKLMKNFHFVKFCHFLLDFLSIYRPLSEVCQKDMVLVTEVNATLGRAYVALETLRLQAGPKEEEFNAGFRDGRLHGIVLDRTETAEERFQADRERVILTGVGYLQRRFDAPRPAPLKSMEVFDTLAWPRGTELAAFGNDDILALARYFELSLPPGYSEEALLEEWLGLKALAQNLPFSMLCKNTLAQRCRFPLLSRLVAVVVCVPISTSCCERGFSALNRIRTDERTKLSNEVINMLMMTAVNGVAVADYDPHPAIQHWYLTSSGRRFSHVYTCAGVPPEPGPCKEKMGVLSVEEPGTQKPPTPSSGEPPEVPRGCITEPDRLRRPWPS", "length": 1144, "header": "tr|A0A5G2QL50-1|A0A5G2QL50_PIG Isoform 1 of Zinc finger protein 862 OS=Sus scrofa OX=9823 GN=ZNF862 PE=4 SV=2 CANONICAL=A0A5G2QL50-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50/entry", "sequence": { "sequence": "LAPVTFDDITVYLLQEEWMLLSQQQKEICGSDKLVAPLEPTLASSELFYKFEQGPEPWLANVQDQRNLLNCHPGKNKMGFVEETDLQKPARETGPYLPPEKKACLSHFSSESGSIEVDCTGKSRKPLKPRSIQKSWFVQFPWLVMNKEQTALFCSACREYPAVRDRRSRLIEGYTGPFKVETLKYHAKSKAHVFCVKALAARDPVWAARFPSIRDVSGDELADPGHLFTADYPTFYPPGLLGARDDLSQLLPSSRTALKDPGGNGAIPALYLDCISDFRQKEIAHDTRSSSVIDILCNDSAEPCDQDPSEEGPFEEVPVVFEDVAVYFTRDEWGTLDKRQKELYRDVMQMNYELLASLGPAAAKPDLISKLEQRAAPWIKDPHGPTWGKGRPPGKKKMVAVREAHTLASAVDSATLPASSRETRTSYCRPSLCEAEVGGRRKVKRTYRPRSIQRSWFGQFPWLVIDPKETRLFCSACRARPSLHDRSSRLVRGYTGPFKVETLKYHGVSKAHKLCVNTVEVKEDAPLAAPVPEISSDLMANMEHFFNAAYSIAYHSRPLNDFEKILQLLQSTGTMILGKYRNRTACTQFIKYISETLKKEILEDVRSSPCVSVLLDSTTDASEQSCVGIYLRYFKGLEVKESYLTLAPVYSETADGYFETIVSALDELDVPFRKPGWVVGLGTDGSALLSCRGGLVEKFQEVIPQLLPVHCVAHRLHLAVVDACGGIDLVKKCDRHIRTVFKFYQSSNKSLRELQEGAAPLEQEILRLKDLNAVRWVASRRRTLDALLVSWPALARHLQRVAEAGGQVGHRAKGLLKLMKNFHFVKFCHFLLDFLSIYRPLSEVCQKDMVLVTEVNATLGRAYVALETLRLQAGPKEEEFNAGFRDGRLHGIVLDRTETAEERFQADRERVILTGVGYLQRRFDAPRPAPLKSMEVFDTLAWPRGTELAAFGNDDILALARYFELSLPPGYSEEALLEEWLGLKALAQNLPFSMLCKNTLAQRCRFPLLSRLVAVVVCVPISTSCCERGFSALNRIRTDERTKLSNEVINMLMMTAVNGVAVADYDPHPAIQHWYLTSSGRRFSHVYTCAGVPPEPGPCKEKMGVLSVEEPGTQKPPTPSSGEPPEVPRGCITEPDRLRRPWPS", "length": 1144, "header": "tr|A0A5G2QL50-1|A0A5G2QL50_PIG Isoform 1 of Zinc finger protein 862 OS=Sus scrofa OX=9823 GN=ZNF862 PE=4 SV=2 CANONICAL=A0A5G2QL50-1" }, "locus": { "chromosome": "18", "start_pos": 55874154, "end_pos": 55849196, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088419.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088419.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064745.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064745.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 748, "end_pos": 750, "annotation": "n_glycosylation_sequon" }, { "start_pos": 856, "end_pos": 858, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1144, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL50" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QL50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL50" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 70, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 298, "end_pos": 300 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 748, "end_pos": 750 }, { "start_pos": 856, "end_pos": 858 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL54-1", "uniprot_ac": "A0A5G2QL54", "uniprot_id": "A0A5G2QL54_PIG", "mass": { "chemical_mass": 50929.0, "monoisotopic_mass": 50929.0 }, "refseq": {}, "gene_names": [ { "name": "DDX41", "type": "recommended", "evidence": [ { "id": "A0A5G2QL54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ] }, { "name": "DOK3", "type": "synonym", "evidence": [ { "id": "A0A5G2QL54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ] } ], "protein_names": [ { "name": "Docking protein 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QL54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDX41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54", "locus": { "chromosome": "2", "start_pos": 80438867, "end_pos": 80433190, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032642", "url": "https://www.ensembl.org/id/ENSSSCG00000032642" } ] } } ], "crossref": [ { "id": "A0A5G2QL54", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032642", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032642", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01203", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01203", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A5J6", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAFSREPSAPFAEGEADATGFRPQAPTDPALCPAMSGAQDPDEPSRCPLRSSQKSWRKMWGLLYAGGPSGVARLESWEFRDGGLGPTGDRSGGPSRRGERRVIRLADCVSVLPADGESCPRDTSAFLLTTTERSHLLAAQHRQEWMDPICQLAFPGTGESSSGSGEAEAPKRDRVPMEENSIYSSWQELVEFPVVVQRTEAAARCQLKGPYLLLLGQDSIQLREPPSPQPLYTWPYRFLRKFGSDQGVFSFEAGRRCDSGEGLFAFSSPRARDLCGAVAAAIARQRERLPEPAGPRPCPLPRATSLPSLEPPGELREVPPGTEAPGFRRVREAEPGPQSLPPLLGHAAADEPVLYASVCKRASGPPTAAHHLYENLCMLDAGGPEQEARGSSSIPASPIYHNSQDPGWPGQALDPSLEAQYRRLLELDLADHSEDAGGLGHPGLHSGFKAKLVTLLSRERKKGPPPCDRP", "length": 471, "header": "tr|A0A5G2QL54-1|A0A5G2QL54_PIG Isoform 1 of Docking protein 3 OS=Sus scrofa OX=9823 GN=DDX41 PE=3 SV=2 CANONICAL=A0A5G2QL54-1" }, "isoforms": [ { "isoform_ac": "A0A287A5J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J6/entry", "sequence": { "sequence": "MEPLETPIKDGILYQQQVKFGKKSWRKMWGLLYAGGPSGVARLESWEFRDGGLGPTGDRSGGPSRRGERRVIRLADCVSVLPADGESCPRDTSAFLLTTTERSHLLAAQHRQEWMDPICQLAFPGTGESSSGSGEAEAPKRDRVPMEENSIYSSWQELVEFPVVVQRTEAAARCQLKGPYLLLLGQDSIQLREPPSPQPLYTWPYRFLRKFGSDQGVFSFEAGRRCDSGEGLFAFSSPRARDLCGAVAAAIARQRERLPEPAGPRPCPLPRATSLPSLEPPGELREVPPGTEAPGFRRVREAEPGPQSLPPLLGHAAADEPVLYASVCKRASGPPTAAHHLYENLCMLDAGGPEQEARGSSSIPASPIYHNSQDPGWPGQALDPSLEAQYRRLLELDLAEGLGHPGLHSGFKAKLVTLLSRERKKGPPPCDRP", "length": 433, "header": "tr|A0A287A5J6-1|A0A287A5J6_PIG Computationally mapped isoform of Docking protein 3 OS=Sus scrofa OX=9823 GN=DDX41 PE=3 SV=2 CANONICAL=A0A5G2QL54-1" }, "locus": { "chromosome": "2", "start_pos": 80445267, "end_pos": 80440872, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049461.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049461.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039036.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039036.2" } ] } }, { "isoform_ac": "A0A5G2QL54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54/entry", "sequence": { "sequence": "MQAFSREPSAPFAEGEADATGFRPQAPTDPALCPAMSGAQDPDEPSRCPLRSSQKSWRKMWGLLYAGGPSGVARLESWEFRDGGLGPTGDRSGGPSRRGERRVIRLADCVSVLPADGESCPRDTSAFLLTTTERSHLLAAQHRQEWMDPICQLAFPGTGESSSGSGEAEAPKRDRVPMEENSIYSSWQELVEFPVVVQRTEAAARCQLKGPYLLLLGQDSIQLREPPSPQPLYTWPYRFLRKFGSDQGVFSFEAGRRCDSGEGLFAFSSPRARDLCGAVAAAIARQRERLPEPAGPRPCPLPRATSLPSLEPPGELREVPPGTEAPGFRRVREAEPGPQSLPPLLGHAAADEPVLYASVCKRASGPPTAAHHLYENLCMLDAGGPEQEARGSSSIPASPIYHNSQDPGWPGQALDPSLEAQYRRLLELDLADHSEDAGGLGHPGLHSGFKAKLVTLLSRERKKGPPPCDRP", "length": 471, "header": "tr|A0A5G2QL54-1|A0A5G2QL54_PIG Isoform 1 of Docking protein 3 OS=Sus scrofa OX=9823 GN=DDX41 PE=3 SV=2 CANONICAL=A0A5G2QL54-1" }, "locus": { "chromosome": "2", "start_pos": 80445267, "end_pos": 80439251, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075455.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075455.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064750.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064750.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 471, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QL54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL54" }, { "id": "PS51064", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IRS-type PTB", "eco_id": "ECO_0000259", "start_pos": 189, "end_pos": 293, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL71-1", "uniprot_ac": "A0A5G2QL71", "uniprot_id": "A0A5G2QL71_PIG", "mass": { "chemical_mass": 17254.0, "monoisotopic_mass": 17254.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Centriolin", "type": "recommended", "evidence": [ { "id": "A0A5G2QL71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL71", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71", "locus": {} } ], "crossref": [ { "id": "A0A5G2QL71", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL71", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038679", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038679", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QL71", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL71-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAERTEDHHLQVLKESETLLQAKRTELEKLKSQVTGQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVAEKCSHIREVKSLLEELSFQKGELNVQISEKKTQLSLIKQEIEKEEENLQVVLGQMSKHKTVSYLQQNL", "length": 150, "header": "tr|A0A5G2QL71-1|A0A5G2QL71_PIG Isoform 1 of Centriolin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL71-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL71-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71/entry", "sequence": { "sequence": "MTAERTEDHHLQVLKESETLLQAKRTELEKLKSQVTGQQQEMAVLDRQLGHKKEELHLLQGSMVQAKADLQEALRLGETEVAEKCSHIREVKSLLEELSFQKGELNVQISEKKTQLSLIKQEIEKEEENLQVVLGQMSKHKTVSYLQQNL", "length": 150, "header": "tr|A0A5G2QL71-1|A0A5G2QL71_PIG Isoform 1 of Centriolin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL71-1" }, "locus": { "chromosome": "AEMK02000153.1", "start_pos": 18075, "end_pos": 14815, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082576.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082576.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062818.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062818.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL71", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL71" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL71-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 150, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL71-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL71" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL93-1", "uniprot_ac": "A0A5G2QL93", "uniprot_id": "A0A5G2QL93_PIG", "mass": { "chemical_mass": 12501.0, "monoisotopic_mass": 12501.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QL93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93", "locus": {} } ], "crossref": [ { "id": "A0A5G2QL93", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QL93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGNSIFSFLRHLHTVFHRGCTNLHSYQQCNRIPFSPCPLHHLLFVDFLMVSILAGVRWYLIVVLICISLIISDAEHFFMCIFLPPVCLLQRIVCLGLLSIF", "length": 110, "header": "tr|A0A5G2QL93-1|A0A5G2QL93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL93-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93/entry", "sequence": { "sequence": "MPRSGIAGSNGNSIFSFLRHLHTVFHRGCTNLHSYQQCNRIPFSPCPLHHLLFVDFLMVSILAGVRWYLIVVLICISLIISDAEHFFMCIFLPPVCLLQRIVCLGLLSIF", "length": 110, "header": "tr|A0A5G2QL93-1|A0A5G2QL93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL93-1" }, "locus": { "chromosome": "1", "start_pos": 179247746, "end_pos": 179247307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084786.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084786.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065591.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL93" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL94-1", "uniprot_ac": "A0A5G2QL94", "uniprot_id": "A0A5G2QL94_PIG", "mass": { "chemical_mass": 17669.0, "monoisotopic_mass": 17669.0 }, "refseq": {}, "gene_names": [ { "name": "CNIH1", "type": "recommended", "evidence": [ { "id": "A0A5G2QL94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ] } ], "protein_names": [ { "name": "Cornichon family AMPA receptor auxiliary protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QL94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNIH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94", "locus": { "chromosome": "1", "start_pos": 183810849, "end_pos": 183829207, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027256", "url": "https://www.ensembl.org/id/ENSSSCG00000027256" } ] } } ], "crossref": [ { "id": "A0A5G2QL94", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027256", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027256", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5694530", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A6G3", "url": "https://www.uniprot.org/uniprotkb/A0A287A6G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6G3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R310", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R310", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R310-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R310-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L613", "url": "https://www.uniprot.org/uniprotkb/I3L613", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L613-1", "url": "https://www.uniprot.org/uniprotkb/I3L613-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPTVEKVKKIKRVKIALKLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYG", "length": 152, "header": "tr|A0A5G2QL94-1|A0A5G2QL94_PIG Isoform 1 of Cornichon family AMPA receptor auxiliary protein 1 OS=Sus scrofa OX=9823 GN=CNIH1 PE=1 SV=1 CANONICAL=A0A5G2QL94-1" }, "isoforms": [ { "isoform_ac": "A0A287A6G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6G3/entry", "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS", "length": 121, "header": "tr|A0A287A6G3-1|A0A287A6G3_PIG Computationally mapped isoform of Cornichon family AMPA receptor auxiliary protein 1 OS=Sus scrofa OX=9823 GN=CNIH1 PE=1 SV=2 CANONICAL=A0A5G2QL94-1" }, "locus": { "chromosome": "1", "start_pos": 183829071, "end_pos": 183815779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050324.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050324.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039570.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039570.2" } ] } }, { "isoform_ac": "A0A5G2QL94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94/entry", "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPTVEKVKKIKRVKIALKLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYG", "length": 152, "header": "tr|A0A5G2QL94-1|A0A5G2QL94_PIG Isoform 1 of Cornichon family AMPA receptor auxiliary protein 1 OS=Sus scrofa OX=9823 GN=CNIH1 PE=1 SV=1 CANONICAL=A0A5G2QL94-1" }, "locus": { "chromosome": "1", "start_pos": 183829071, "end_pos": 183818101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087760.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087760.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062844.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062844.1" } ] } }, { "isoform_ac": "A0A5G2R310-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R310/entry", "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWSMIYVLVSS", "length": 96, "header": "tr|A0A5G2R310-1|A0A5G2R310_PIG Computationally mapped isoform of Cornichon family AMPA receptor auxiliary protein 1 OS=Sus scrofa OX=9823 GN=CNIH1 PE=3 SV=1 CANONICAL=A0A5G2QL94-1" }, "locus": { "chromosome": "1", "start_pos": 183829071, "end_pos": 183815779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070276.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070276.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064939.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064939.1" } ] } }, { "isoform_ac": "I3L613-1", "url": "https://www.uniprot.org/uniprotkb/I3L613/entry", "sequence": { "sequence": "MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYG", "length": 136, "header": "tr|I3L613-1|I3L613_PIG Computationally mapped isoform of Cornichon family AMPA receptor auxiliary protein 1 OS=Sus scrofa OX=9823 GN=CNIH1 PE=1 SV=3 CANONICAL=A0A5G2QL94-1" }, "locus": { "chromosome": "1", "start_pos": 183829071, "end_pos": 183818101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022519.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022519.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019464.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019464.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" }, { "id": "R-SSC-5694530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "resource": "Reactome", "description": "Cargo concentration in the ER" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL94" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 152, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QL95-1", "uniprot_ac": "A0A5G2QL95", "uniprot_id": "A0A5G2QL95_PIG", "mass": { "chemical_mass": 14099.0, "monoisotopic_mass": 14099.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QL95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95", "locus": {} } ], "crossref": [ { "id": "A0A5G2QL95", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL95", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041316", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041316", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QL95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTGVHISFQITVFSGYVPISGKAGSCYSIFSFLRNLHTVSHSGCTNLHSHQQCRRVPFSPHPLQLLLFVDFLMMAVLNGVRWYLIAVLICISLVISDVQHLFICFLAICLLWRNVYLDLLPIF", "length": 124, "header": "tr|A0A5G2QL95-1|A0A5G2QL95_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL95-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95/entry", "sequence": { "sequence": "MNTGVHISFQITVFSGYVPISGKAGSCYSIFSFLRNLHTVSHSGCTNLHSHQQCRRVPFSPHPLQLLLFVDFLMMAVLNGVRWYLIAVLICISLVISDVQHLFICFLAICLLWRNVYLDLLPIF", "length": 124, "header": "tr|A0A5G2QL95-1|A0A5G2QL95_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QL95-1" }, "locus": { "chromosome": "15", "start_pos": 13199559, "end_pos": 13199188, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064795.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QL95-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QL95-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QL95" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLB7-1", "uniprot_ac": "A0A5G2QLB7", "uniprot_id": "A0A5G2QLB7_PIG", "mass": { "chemical_mass": 10589.0, "monoisotopic_mass": 10589.0 }, "refseq": {}, "gene_names": [ { "name": "SCYGR6", "type": "recommended", "evidence": [ { "id": "A0A5G2QLB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7" } ] } ], "protein_names": [ { "name": "Small cysteine and glycine repeat containing 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QLB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCYGR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7", "locus": { "chromosome": "15", "start_pos": 129100009, "end_pos": 129100344, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000046883", "url": "https://www.ensembl.org/id/ENSSSCG00000046883" } ] } } ], "crossref": [ { "id": "A0A5G2QLB7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046883", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046883", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCCGCGSCGGCGGCSGCGGCSSGCGGCGGCGGGCGGCNSCTSCRCYRVGCCSGCCPCCCGCCGGCCSTPVVCCYRRTCSCNSCGCGCGKGCCQQKSCCQQKHCCKKQCCC", "length": 111, "header": "tr|A0A5G2QLB7-1|A0A5G2QLB7_PIG Isoform 1 of Small cysteine and glycine repeat containing 6 OS=Sus scrofa OX=9823 GN=SCYGR6 PE=4 SV=1 CANONICAL=A0A5G2QLB7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7/entry", "sequence": { "sequence": "MGCCGCGSCGGCGGCSGCGGCSSGCGGCGGCGGGCGGCNSCTSCRCYRVGCCSGCCPCCCGCCGGCCSTPVVCCYRRTCSCNSCGCGCGKGCCQQKSCCQQKHCCKKQCCC", "length": 111, "header": "tr|A0A5G2QLB7-1|A0A5G2QLB7_PIG Isoform 1 of Small cysteine and glycine repeat containing 6 OS=Sus scrofa OX=9823 GN=SCYGR6 PE=4 SV=1 CANONICAL=A0A5G2QLB7-1" }, "locus": { "chromosome": "15", "start_pos": 129100344, "end_pos": 129100012, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076269.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076269.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065616.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065616.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLB7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLB7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 111, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLB7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLB7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLC1-1", "uniprot_ac": "A0A5G2QLC1", "uniprot_id": "A0A5G2QLC1_PIG", "mass": { "chemical_mass": 52804.0, "monoisotopic_mass": 52804.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046428", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046428", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16607", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16607", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SFNQILLESGMSIAAPMAVAAALAGLQAEAKCPVCLDGLHDPVTIECGHNFCRRCIQRSWAELEDTFPCPVCRHSCQEPHVRSNTQLGRMIEVARLLHSSRSSSRRSQQCPPCERHDQVLSLFCEDDLEVLCALCAQTPKHRSHVLRPLAEAAADHRQRLGGYVGPLKRQVAEAQGLLVAQDRKVLELREHVQRQRLELASDFAQLNRAVDREQEAALARLVQEEHTIHEQLGANIAAFSDHIWELRGLLQEVTERSVLPGAQLLRGIGPVLGRCESLKCPEVYSFQLRREGCSLPAQHSALQKIIQKFTEDVILDPESAHPDLLVSEDRKSATLARKRQGVPRAGRSGAEPAVLGLGGFGRGRRYWEVRVGGATWAVGLCTDSAPRPRAWLLEDPRGSWTWAGARGPTRPADPGGIGVYLDYELGVISFYSFKDRSHIYSFSDTFSEVLKPYFSIGCSSQPLTICGWNLSCDWGPA", "length": 477, "header": "tr|A0A5G2QLC1-1|A0A5G2QLC1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLC1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1/entry", "sequence": { "sequence": "SFNQILLESGMSIAAPMAVAAALAGLQAEAKCPVCLDGLHDPVTIECGHNFCRRCIQRSWAELEDTFPCPVCRHSCQEPHVRSNTQLGRMIEVARLLHSSRSSSRRSQQCPPCERHDQVLSLFCEDDLEVLCALCAQTPKHRSHVLRPLAEAAADHRQRLGGYVGPLKRQVAEAQGLLVAQDRKVLELREHVQRQRLELASDFAQLNRAVDREQEAALARLVQEEHTIHEQLGANIAAFSDHIWELRGLLQEVTERSVLPGAQLLRGIGPVLGRCESLKCPEVYSFQLRREGCSLPAQHSALQKIIQKFTEDVILDPESAHPDLLVSEDRKSATLARKRQGVPRAGRSGAEPAVLGLGGFGRGRRYWEVRVGGATWAVGLCTDSAPRPRAWLLEDPRGSWTWAGARGPTRPADPGGIGVYLDYELGVISFYSFKDRSHIYSFSDTFSEVLKPYFSIGCSSQPLTICGWNLSCDWGPA", "length": 477, "header": "tr|A0A5G2QLC1-1|A0A5G2QLC1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLC1-1" }, "locus": { "chromosome": "8", "start_pos": 44009524, "end_pos": 44007029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083575.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083575.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065621.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065621.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLC1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 477, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLC1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 105, "end_pos": 149, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QLC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 293, "end_pos": 472, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QLC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 73, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 469, "end_pos": 471 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLC5-1", "uniprot_ac": "A0A5G2QLC5", "uniprot_id": "A0A5G2QLC5_PIG", "mass": { "chemical_mass": 104463.0, "monoisotopic_mass": 104463.0 }, "refseq": {}, "gene_names": [ { "name": "ECT2L", "type": "recommended", "evidence": [ { "id": "A0A5G2QLC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5" } ] } ], "protein_names": [ { "name": "Epithelial cell transforming 2 like", "type": "synonym", "evidence": [ { "id": "A0A5G2QLC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ECT2L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5", "locus": { "chromosome": "1", "start_pos": 25566954, "end_pos": 25644277, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004147", "url": "https://www.ensembl.org/id/ENSSSCG00000004147" } ] } } ], "crossref": [ { "id": "A0A5G2QLC5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004147", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004147", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22173", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22173", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052805", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052805", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46857:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46857:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14252", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14252", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESFHTRFSAWTPFSNKSLNRQLFQERVALISHWFDLWTNKQRQEFLCTIFLRCSKSQLRIVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCIKFGWFLPYTPAENEYGAWKHHYIACVSNLDWLTPREAAAVYGTLNEPKTEDEEVQERQREKHLRKIIWEKIALRKKELFKVRPPWVSGTRCSRLFKSKCQPRLSQTMRDQVGLQETLEKQLVLASLEALPKRSNVSGCHSYPSFSKKNWCGVYKNDGSSSHVLQPHLILISSRIPAYEMVVSSVRTGIISVVYDYSSLTLESLLYLTEKALDGQKVQSMGIFSDGNSREINLLQGYKVGIKNLLRPEVRDFWEKLGSYVAPEEAGGHVDVFVPLGASEAGIEVLSQLSQLTGTLFTAPAGIATGSYQHILSDWLGRPWERAPPSIYFSEAKLQAWSNLTDFLEDTLKSVRKQLSPLFKDLKKNISGRMIGQFIFDTMGMAHILNNQEIAQALADGLTELSQENSERNVTEDNPQDAKSSLSKNDPNFELVVKLERKLQLDLAEKRTSVVRELLQSERKYVQMLEIVRDVYAKPLRAALSSNRAILSAANIQIIFSDILRILCLNRHFLEDLRDRLQEWGPAHCVGDIFIKFGSQLNTYTNFFNNYPVVLKTIEKCREVIPAFRAFLKRHDKTVATKMLSLPELLLHPSRRFEEYMHLLYALRLHTPAEHVDRGDLTTAIDQIRKYKGYIEQMKQNINMKDQLSDIQSIIWGCPTLSEVNRYLIRVQDVAQLQCCDEEISFSLRLYEHTRDLSLFLFNDALLVSSRGTSHTPFERTSKSTYRFIASVALHRLLIEDIPDSKYIRNAFILQGPKHEWICATEVEDDKFLWLSVLQNAIKSSIEK", "length": 905, "header": "tr|A0A5G2QLC5-1|A0A5G2QLC5_PIG Isoform 1 of Epithelial cell transforming 2 like OS=Sus scrofa OX=9823 GN=ECT2L PE=4 SV=1 CANONICAL=A0A5G2QLC5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5/entry", "sequence": { "sequence": "MESFHTRFSAWTPFSNKSLNRQLFQERVALISHWFDLWTNKQRQEFLCTIFLRCSKSQLRIVQDWFSERMQVAKVDFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCIKFGWFLPYTPAENEYGAWKHHYIACVSNLDWLTPREAAAVYGTLNEPKTEDEEVQERQREKHLRKIIWEKIALRKKELFKVRPPWVSGTRCSRLFKSKCQPRLSQTMRDQVGLQETLEKQLVLASLEALPKRSNVSGCHSYPSFSKKNWCGVYKNDGSSSHVLQPHLILISSRIPAYEMVVSSVRTGIISVVYDYSSLTLESLLYLTEKALDGQKVQSMGIFSDGNSREINLLQGYKVGIKNLLRPEVRDFWEKLGSYVAPEEAGGHVDVFVPLGASEAGIEVLSQLSQLTGTLFTAPAGIATGSYQHILSDWLGRPWERAPPSIYFSEAKLQAWSNLTDFLEDTLKSVRKQLSPLFKDLKKNISGRMIGQFIFDTMGMAHILNNQEIAQALADGLTELSQENSERNVTEDNPQDAKSSLSKNDPNFELVVKLERKLQLDLAEKRTSVVRELLQSERKYVQMLEIVRDVYAKPLRAALSSNRAILSAANIQIIFSDILRILCLNRHFLEDLRDRLQEWGPAHCVGDIFIKFGSQLNTYTNFFNNYPVVLKTIEKCREVIPAFRAFLKRHDKTVATKMLSLPELLLHPSRRFEEYMHLLYALRLHTPAEHVDRGDLTTAIDQIRKYKGYIEQMKQNINMKDQLSDIQSIIWGCPTLSEVNRYLIRVQDVAQLQCCDEEISFSLRLYEHTRDLSLFLFNDALLVSSRGTSHTPFERTSKSTYRFIASVALHRLLIEDIPDSKYIRNAFILQGPKHEWICATEVEDDKFLWLSVLQNAIKSSIEK", "length": 905, "header": "tr|A0A5G2QLC5-1|A0A5G2QLC5_PIG Isoform 1 of Epithelial cell transforming 2 like OS=Sus scrofa OX=9823 GN=ECT2L PE=4 SV=1 CANONICAL=A0A5G2QLC5-1" }, "locus": { "chromosome": "1", "start_pos": 25631377, "end_pos": 25567506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075647.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075647.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064830.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLC5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 905, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLC5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC5" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 567, "end_pos": 755, "start_aa": "Lys", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 530, "end_pos": 532 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLC6-1", "uniprot_ac": "A0A5G2QLC6", "uniprot_id": "A0A5G2QLC6_PIG", "mass": { "chemical_mass": 36688.0, "monoisotopic_mass": 36688.0 }, "refseq": {}, "gene_names": [ { "name": "TCP10L2", "type": "recommended", "evidence": [ { "id": "A0A5G2QLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6" } ] } ], "protein_names": [ { "name": "T-complex 10 like 2 (pseudo", "type": "synonym", "evidence": [ { "id": "A0A5G2QLC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCP10L2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLC6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032403", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032403", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10331:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10331:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QLC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRARLGAEEPEDTGRPEDGRTGLDPEPAAGEAGRAEEMLWLQQQVSGLREAFRRQEDHWAATHRALRAQMDALTRQNQELRAGLRASELRRLETKKALAGCLRRQSDTQPMCVEMERIHSAETVSCDGGDKTLSRKQGRSAKPPGRETPREDNPTSCEDEKKWSCGESPVPAACVIALEDPPAADHADTHPSPPEGPAGSPPTQAPRAESTCSSPDIEEPQNLPTEPESPPKTAQHQGAQRQQEEGEEVQHPDDKAGQALGDGCKVDTLAKGTERHTRAEKATFPGLVNGDMTKIRPDQRLAVQRGASRPAYPLFPTGDAVATADELPPAAGPDPQSSG", "length": 340, "header": "tr|A0A5G2QLC6-1|A0A5G2QLC6_PIG Isoform 1 of T-complex 10 like 2 (pseudo OS=Sus scrofa OX=9823 GN=TCP10L2 PE=3 SV=1 CANONICAL=A0A5G2QLC6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6/entry", "sequence": { "sequence": "MLRARLGAEEPEDTGRPEDGRTGLDPEPAAGEAGRAEEMLWLQQQVSGLREAFRRQEDHWAATHRALRAQMDALTRQNQELRAGLRASELRRLETKKALAGCLRRQSDTQPMCVEMERIHSAETVSCDGGDKTLSRKQGRSAKPPGRETPREDNPTSCEDEKKWSCGESPVPAACVIALEDPPAADHADTHPSPPEGPAGSPPTQAPRAESTCSSPDIEEPQNLPTEPESPPKTAQHQGAQRQQEEGEEVQHPDDKAGQALGDGCKVDTLAKGTERHTRAEKATFPGLVNGDMTKIRPDQRLAVQRGASRPAYPLFPTGDAVATADELPPAAGPDPQSSG", "length": 340, "header": "tr|A0A5G2QLC6-1|A0A5G2QLC6_PIG Isoform 1 of T-complex 10 like 2 (pseudo OS=Sus scrofa OX=9823 GN=TCP10L2 PE=3 SV=1 CANONICAL=A0A5G2QLC6-1" }, "locus": { "chromosome": "1", "start_pos": 1996112, "end_pos": 1982182, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086836.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086836.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065626.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065626.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 340, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLC6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLD5-1", "uniprot_ac": "A0A5G2QLD5", "uniprot_id": "A0A5G2QLD5_PIG", "mass": { "chemical_mass": 14434.0, "monoisotopic_mass": 14434.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QLD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRYLHTAFHSGCTNLHSYQQCSRVPFSPHPLWHLLFVDFLMMGFLAGVRWYLIVVLICISLIMSDIEHPFMCFLAICMSSLENCLFRFSTNFFVGVVCLFLVLSCRWCL", "length": 126, "header": "tr|A0A5G2QLD5-1|A0A5G2QLD5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLD5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5/entry", "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRYLHTAFHSGCTNLHSYQQCSRVPFSPHPLWHLLFVDFLMMGFLAGVRWYLIVVLICISLIMSDIEHPFMCFLAICMSSLENCLFRFSTNFFVGVVCLFLVLSCRWCL", "length": 126, "header": "tr|A0A5G2QLD5-1|A0A5G2QLD5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLD5-1" }, "locus": { "chromosome": "2", "start_pos": 58038733, "end_pos": 58038356, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078797.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078797.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 126, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLD5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLE5-1", "uniprot_ac": "A0A5G2QLE5", "uniprot_id": "A0A5G2QLE5_PIG", "mass": { "chemical_mass": 146740.0, "monoisotopic_mass": 146740.0 }, "refseq": { "ac": "XP_020921326", "name": "TBC1 domain family member 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921326" }, "gene_names": [ { "name": "TBC1D4", "type": "recommended", "evidence": [ { "id": "A0A5G2QLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ] }, { "name": "TBC1D4", "type": "synonym", "evidence": [ { "id": "XP_020921326", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921326" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 4", "type": "recommended", "evidence": [ { "id": "A0A5G2QLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5/entry#names_and_taxonomy" } ] }, { "name": "Akt substrate of 160 kDa", "type": "synonym", "evidence": [ { "id": "A0A5G2QLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5/entry#names_and_taxonomy" } ] }, { "name": "TBC1 domain family member 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020921326", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921326" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5", "locus": { "chromosome": "11", "start_pos": 47543815, "end_pos": 47828208, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009464", "url": "https://www.ensembl.org/id/ENSSSCG00000009464" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009464", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009464", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523015", "url": "https://www.ncbi.nlm.nih.gov/gene/100523015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523015", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QLE5", "url": "https://www.orthodb.org/?gene=A0A5G2QLE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11830", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11830", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921326", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921326", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZK86", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZK86-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP29", "url": "https://www.uniprot.org/uniprotkb/A0A287AP29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B036", "url": "https://www.uniprot.org/uniprotkb/A0A287B036", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B036-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B036-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9M1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9M1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHF1", "url": "https://www.uniprot.org/uniprotkb/F1RHF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHF1-1", "url": "https://www.uniprot.org/uniprotkb/F1RHF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHF2", "url": "https://www.uniprot.org/uniprotkb/F1RHF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHF2-1", "url": "https://www.uniprot.org/uniprotkb/F1RHF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSGRLSPQYENEIRQDTASESSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1300, "header": "tr|A0A5G2QLE5-1|A0A5G2QLE5_PIG Isoform 1 of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=1 CANONICAL=A0A5G2QLE5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZK86-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK86/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSGRLSPQYENEISDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1291, "header": "tr|A0A286ZK86-1|A0A286ZK86_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=3 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048526.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048526.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031881.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031881.3" } ] } }, { "isoform_ac": "A0A287AIZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIZ2/entry", "sequence": { "sequence": "MEGSSEPQLDAKAKVTNQLIDFQWKLGMAVSSDSCRSLKYPYVAVMLKVADHSGQVKNKSFEMTIPQFQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCRQDTASESSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1148, "header": "tr|A0A287AIZ2-1|A0A287AIZ2_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=1 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47818520, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062847.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062847.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043860.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043860.1" } ] } }, { "isoform_ac": "A0A287AP29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP29/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSDQCPLDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1285, "header": "tr|A0A287AP29-1|A0A287AP29_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=2 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061888.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061888.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045690.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045690.2" } ] } }, { "isoform_ac": "A0A287B036-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B036/entry", "sequence": { "sequence": "MKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSGRLSPQYENEIRQDTASESSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1119, "header": "tr|A0A287B036-1|A0A287B036_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=2 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47628792, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047613.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047613.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049770.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049770.2" } ] } }, { "isoform_ac": "A0A5G2QLE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSGRLSPQYENEIRQDTASESSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1300, "header": "tr|A0A5G2QLE5-1|A0A5G2QLE5_PIG Isoform 1 of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=1 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083950.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083950.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064850.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064850.1" } ] } }, { "isoform_ac": "A0A5G2QN34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN34/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1237, "header": "tr|A0A5G2QN34-1|A0A5G2QN34_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=1 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087065.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087065.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066302.1" } ] } }, { "isoform_ac": "A0A5G2QRQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRQ3/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1202, "header": "tr|A0A5G2QRQ3-1|A0A5G2QRQ3_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=2 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079364.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079364.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064706.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064706.2" } ] } }, { "isoform_ac": "A0A8W4F9M1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9M1/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSSLPSVRRMHKENNSSTSLPSLHTSSSAPSFTAPSFLKSFYQNSGRLSPQYENEISDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1292, "header": "tr|A0A8W4F9M1-1|A0A8W4F9M1_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=1 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094672.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094672.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075975.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075975.1" } ] } }, { "isoform_ac": "F1RHF1-1", "url": "https://www.uniprot.org/uniprotkb/F1RHF1/entry", "sequence": { "sequence": "LRLAMTLKLIDFQWKLGMAVSSDSCRSLKYPYVAVMLKVADHSGQVKNKSFEMTIPQFQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCRQDTASESSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEASRDELQSRKVKLDYEEVGVCQKEVFITWDKKLLNCRAKIRCDMEDIHTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1138, "header": "tr|F1RHF1-1|F1RHF1_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=4 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47802696, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010376.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010376.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010106.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010106.4" } ] } }, { "isoform_ac": "F1RHF2-1", "url": "https://www.uniprot.org/uniprotkb/F1RHF2/entry", "sequence": { "sequence": "MEPPSCIQDEPFPHPLEPEPGAPAQLGPGKPGDKRFRLWYVGGSCLDRRTTLPMLPWLMAEIRRRSQKPEAGGCGAPAPREVLLVLSAPFLRCVPAPGAGAVGASCPATAQPNPAVFIFEHKAQHISRFIHNSHDLTYFAYLIKAQPDDPESQMACHVFRATDPNQVPDVISSIRQLSKAAMKEDAKPSKDNEDAFYNSQKFEVLYCGKVTVTHKKAPSSLIDDCIEKFSLHEQQRLRVQGEPRPPDAGEDSAALVAEAPAPLADALSEEGDGVADTHPVFSSAPSQPGPASSRICFPERILEDSAFDEQQEFRSRCSSVTGVLQRKVHENSQKPQPRRRHASAPSHVQPSDSEKNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCASESLVDEVMLTLKQAFSTAAALQSAKTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQKMKPINDQEENELVILHLRQLCEAKQRTHIHIGEGPSTISSSTIPENSTSSGRFKLDILKNKAKRSLTSSLENIFSRGANRMRGRLGSMDSFERSNSLASEKDYSPGDSPPGTPPASPLSAAWQTFPEEDSDSPQFRRRAHTFSHPPSSTKRKLNFQDGKAHGVRSPLLRQGSSEHCSDGEGRKRTSSTCSNESLNTGGTPVTPRRISWRQRIFLRVASPMNKSPSAMQQQDGLDRSELLPLSPLAPTMEEEPLVIFTSVEDDTEKVEGRKKSEELRSLWRKAIHQQILLLRMEKENQKLEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTSYKELLKQLTAQQHAILVDLGRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRALYNHLEENEISPSLYAAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSNQETLIMECENFENIVEFLKNTLPDMNTSEMEKIITQVFEMDISKQLHAYEVEYHVLQDELQESLYASEESEPMEKLERANSQLKRQNMDLLEKLQIAHAKIQTLESNLENLLTRETKMKSLIRTLEQEKTAYQKAVEHIRKLLPPDALASFDPLLRDLNCNPNNKAKIGNKP", "length": 1184, "header": "tr|F1RHF2-1|F1RHF2_PIG Computationally mapped isoform of TBC1 domain family member 4 OS=Sus scrofa OX=9823 GN=TBC1D4 PE=1 SV=4 CANONICAL=A0A5G2QLE5-1" }, "locus": { "chromosome": "11", "start_pos": 47760054, "end_pos": 47546143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010375.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010375.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010105.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010105.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 615, "start_aa": "Thr", "end_pos": 615, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr615", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 768, "start_aa": "Thr", "end_pos": 768, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr768", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523015", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to insulin stimulus", "id": "GO:0032869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032869", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1154, "end_pos": 1156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 692, "end_pos": 694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 693, "end_pos": 695, "annotation": "n_glycosylation_sequon" }, { "start_pos": 757, "end_pos": 759, "annotation": "n_glycosylation_sequon" }, { "start_pos": 787, "end_pos": 789, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" }, { "id": "PS01179", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PID", "eco_id": "ECO_0000259", "start_pos": 368, "end_pos": 440, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE5" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 920, "end_pos": 1114, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 615, 768 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1154, "end_pos": 1156 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 692, "end_pos": 694 }, { "start_pos": 693, "end_pos": 695 }, { "start_pos": 757, "end_pos": 759 }, { "start_pos": 787, "end_pos": 789 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLE8-1", "uniprot_ac": "A0A5G2QLE8", "uniprot_id": "A0A5G2QLE8_PIG", "mass": { "chemical_mass": 67417.0, "monoisotopic_mass": 67417.0 }, "refseq": {}, "gene_names": [ { "name": "TTLL12", "type": "recommended", "evidence": [ { "id": "A0A5G2QLE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ] } ], "protein_names": [ { "name": "Tubulin tyrosine ligase like 12", "type": "synonym", "evidence": [ { "id": "A0A5G2QLE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTLL12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8", "locus": { "chromosome": "5", "start_pos": 5720724, "end_pos": 5701583, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000034", "url": "https://www.ensembl.org/id/ENSSSCG00000000034" } ] } } ], "crossref": [ { "id": "A0A5G2QLE8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000034", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000034", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WTPDCKR", "url": "https://omabrowser.org/oma/group/WTPDCKR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46088", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46088", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46088:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46088:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8955332", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJR7", "url": "https://www.uniprot.org/uniprotkb/F1SJR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFGIMQVEEVEEAESEEEVAREARKKPNPGGELCYKVIVTNENGLRAADPNSIFLIDHAWTCRVEHARQQLQQVPGLLHRMANLMGVEFHGELPSAEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADAPSFATAPFFYMPQRVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRRCRLLPWAPADLLDLSSSTPEPPAEHYQAILEENKEKLPLAISPAVYPRDHVFKVYTDVQQVLSHLTHPRFSFTQSEADADILYNFSHFKDYRRLSQERPTVLLNQFPCENLLTVKDCLASIARRVGGPEGPAWLPRTFNLRTELPQFVSYFQQRERRGEDNHWICKPWNLARSLDTHITKSLHSVIRHRESSPKVVSKYIESPVLFLREDVGGVKFDIRYVVLLRSVRPLKLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPEVVLKQVHYNEFIPEFEKQYPEFPWKSVQAEIFQAFRELFQAACAKPPPLGLCDYPSSRAVYAVDLMLKWDSRPDGRQVMQPQVLEVNFNPDCERACRYHPTFFNDVFSTLYLDESDGCPVTRLI", "length": 580, "header": "tr|A0A5G2QLE8-1|A0A5G2QLE8_PIG Isoform 1 of Tubulin tyrosine ligase like 12 OS=Sus scrofa OX=9823 GN=TTLL12 PE=1 SV=1 CANONICAL=A0A5G2QLE8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8/entry", "sequence": { "sequence": "MFGIMQVEEVEEAESEEEVAREARKKPNPGGELCYKVIVTNENGLRAADPNSIFLIDHAWTCRVEHARQQLQQVPGLLHRMANLMGVEFHGELPSAEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADAPSFATAPFFYMPQRVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRRCRLLPWAPADLLDLSSSTPEPPAEHYQAILEENKEKLPLAISPAVYPRDHVFKVYTDVQQVLSHLTHPRFSFTQSEADADILYNFSHFKDYRRLSQERPTVLLNQFPCENLLTVKDCLASIARRVGGPEGPAWLPRTFNLRTELPQFVSYFQQRERRGEDNHWICKPWNLARSLDTHITKSLHSVIRHRESSPKVVSKYIESPVLFLREDVGGVKFDIRYVVLLRSVRPLKLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPEVVLKQVHYNEFIPEFEKQYPEFPWKSVQAEIFQAFRELFQAACAKPPPLGLCDYPSSRAVYAVDLMLKWDSRPDGRQVMQPQVLEVNFNPDCERACRYHPTFFNDVFSTLYLDESDGCPVTRLI", "length": 580, "header": "tr|A0A5G2QLE8-1|A0A5G2QLE8_PIG Isoform 1 of Tubulin tyrosine ligase like 12 OS=Sus scrofa OX=9823 GN=TTLL12 PE=1 SV=1 CANONICAL=A0A5G2QLE8-1" }, "locus": { "chromosome": "5", "start_pos": 5717812, "end_pos": 5705988, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078462.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078462.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064855.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064855.1" } ] } }, { "isoform_ac": "F1SJR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR7/entry", "sequence": { "sequence": "MFGIMQVAREARKKPNPGGELCYKVIVTNENGLRAADPNSIFLIDHAWTCRVEHARQQLQQVPGLLHRMANLMGVEFHGELPSAEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADAPSFATAPFFYMPQRVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRRCRLLPWAPADLLDLSSSTPEPPAEHYQAILEENKEKLPLAISPAVYPRDHVFKVYTDVQQVLSHLTHPRFSFTQSEADADILYNFSHFKDYRRLSQERPTVLLNQFPCENLLTVKDCLASIARRVGGPEGPAWLPRTFNLRTELPQFVSYFQQRERRGEDNHWICKPWNLARSLDTHITKSLHSVIRHRESSPKVVSKYIESPVLFLREDVGGVKFDIRYVVLLRSVRPLKLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPEVVLKQVHYNEFIPEFEKQYPEFPWKSVQAEIFQAFRELFQAACAKPPPLGLCDYPSSRAVYAVDLMLKWDSRPDGRQVMQPQVLEVNFNPDCERACRYHPTFFNDVFSTLYLDESDGCPVTRLI", "length": 568, "header": "tr|F1SJR7-1|F1SJR7_PIG Computationally mapped isoform of Tubulin tyrosine ligase like 12 OS=Sus scrofa OX=9823 GN=TTLL12 PE=1 SV=4 CANONICAL=A0A5G2QLE8-1" }, "locus": { "chromosome": "5", "start_pos": 5717812, "end_pos": 5705988, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000036.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000036.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000036.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000036.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8955332", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "resource": "Reactome", "description": "Carboxyterminal post-translational modifications of tubulin" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A1Q9-1", "protein_name": "Tubulin tyrosine ligase like 12", "gene_name": "Ttll12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRGRPGMNGERHAPARVRTLEASQPRTQARAHRKLKSRGGRRRAHPSTMEGEPRSQPGSPGRAERLNARLLDEFVSLHGPALRASGVPERLWGSLLHKLEHEVFDAGEMFGIMQVEEVEEAEDEAAREAQRKQPNPGGELCYKVIVTSENGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLHRMANLMGIEFHGEVPSPEVVALVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADMPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDYAYGEADPLIRKCMLLPWAPADMLDLSSSTPEPPAKYYQAILEENKEKLPLTISPVARPQGHIFRVHCDVQQVLSHLTHPRFTFTDSEADADVYFHFSHFKDYTKLSQESPQVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFFREDVGNVKFDIRYIVLLRSVRPLRLFVYDVFWLRFSNRPFALNDLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQNPEFPWSGVQAEIFKAFTELFEVACAKPPPMGLCDYPSSRAIYAIDLMLKWDSHPDGKRVMQPQILEVNFNPDCERACKYHPSFFNDVFSTLFLDETDDCHVTRII", "length": 688 }, "evidence": [ { "id": "A0A5G2QLE8", "url": "https://omabrowser.org/oma/group/A0A5G2QLE8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14166-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "TTLL12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAERGPERRPAERSSPGQTPEEGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDEAAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGLLHRMANLMGIEFHGELPSTEAVALVLEEMWKFNQTYQLAHGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQAILEENKEKLPLDINPVVHPHGHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSVRPLRLFVYDVFWLRFSNRAFALNDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPEFEKQYPEFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQPQILEVNFNPDCERACRYHPTFFNDVFSTLFLDQPGGCHVTCLV", "length": 644 }, "evidence": [ { "id": "A0A5G2QLE8", "url": "https://omabrowser.org/oma/group/A0A5G2QLE8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3UDE2-1", "protein_name": "Tubulin--tyrosine ligase-like protein 12", "gene_name": "Ttll12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIQSGPQPGSPGRAERLNARLLDEFVSLHGPTLRASGVPERLWGRLLHKLEHEVFDAGEMFGIMQVEEVEEAEDEAAREAQRKQPNPGGELCYKVIVTSESGVRADDPNSIFLIDHAWTCRVEHARKQLQQVPGLLHRMANLMGIEFHGEVPSPEVVALVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDMPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQAILEENKEKLPLAISPVARPQGHVFRVHCDVQQVLGHLTHPRFTFTDSEADADIFFHFSHFKDYMKLSQESPQVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYIVLLRSVRPLRLFAYDVFWLRFSNRPFALDDLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQYPEFPWSDVQAEIFKAFTELFQVACAKPPPMGLCDYPSSRAMYAIDLMLNWDNHPDGKRVMQPQILEVNFNPDCERACRYHPSFFNDVFSTLFLDETDNCHVTRII", "length": 639 }, "evidence": [ { "id": "A0A5G2QLE8", "url": "https://omabrowser.org/oma/group/A0A5G2QLE8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of mitotic cell cycle", "id": "GO:0007346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007346", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" }, { "name": "negative regulation of type I interferon-mediated signaling pathway", "id": "GO:0060339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060339", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone H4K20me2 reader activity", "id": "GO:0140005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 580, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLE8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLE8" }, { "id": "PF25556", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25556" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin--tyrosine ligase-like protein 12 SET-like", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 199, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 273, "end_pos": 275 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLH7-1", "uniprot_ac": "A0A5G2QLH7", "uniprot_id": "A0A5G2QLH7_PIG", "mass": { "chemical_mass": 12496.0, "monoisotopic_mass": 12496.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLH7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044216", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044216", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKKTKQNKTKNLYEVGTVKKLLVIIKKSTNNKRWRGHGEKRAFQHCWWECKLMQPLWKTVWRILKQLKIELPYDMEIPLLGIYPEKTIIRKDTFTPMSTAAHL", "length": 104, "header": "tr|A0A5G2QLH7-1|A0A5G2QLH7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLH7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7/entry", "sequence": { "sequence": "MEKKTKQNKTKNLYEVGTVKKLLVIIKKSTNNKRWRGHGEKRAFQHCWWECKLMQPLWKTVWRILKQLKIELPYDMEIPLLGIYPEKTIIRKDTFTPMSTAAHL", "length": 104, "header": "tr|A0A5G2QLH7-1|A0A5G2QLH7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLH7-1" }, "locus": { "chromosome": "7", "start_pos": 101631310, "end_pos": 101630999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069832.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069832.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064890.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLH7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 104, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLH7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLH7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLI1-1", "uniprot_ac": "A0A5G2QLI1", "uniprot_id": "A0A5G2QLI1_PIG", "mass": { "chemical_mass": 32997.0, "monoisotopic_mass": 32997.0 }, "refseq": {}, "gene_names": [ { "name": "C3H2orf73", "type": "recommended", "evidence": [ { "id": "A0A5G2QLI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1" } ] }, { "name": "CIMIP6", "type": "recommended", "evidence": [ { "id": "A0A5G2QLI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1" } ] }, { "name": "CIMIP6", "type": "synonym", "evidence": [ { "id": "A0A5G2QLI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1" } ] } ], "protein_names": [ { "name": "Chromosome 3 C2orf73 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QLI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C3H2orf73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLI1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516432", "url": "https://www.ncbi.nlm.nih.gov/gene/100516432", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516432", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516432", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RNDFQKP", "url": "https://omabrowser.org/oma/group/RNDFQKP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQJ9", "url": "https://www.orthodb.org/?gene=F1SQJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35087:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35087:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15667", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15667", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQJ9", "url": "https://www.uniprot.org/uniprotkb/F1SQJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQJ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTSELRYRRQHKIEDAGIPYITEKKEEINDEKKPGKSIQHSKPCVRRGRVCYAKFINTNARTCNEPVPYMDPKNEPENQGDWWSHGKGLENPFQPPYDTKSTQRSDFQKPACPLVSPVKHSKLQKPSYGIVPLASLDTSAECQKNFIERISFIHQYDARKTPNEPIRGKRHGVFVQTEIKPGSRPIVPKRTEVLLNAPGLCSSEWSQKTEKGNSAESKMISPGLCRQNSQELLETKTHLSETDVREAANACPRSPERREKIADPYQITAVNALLTSHAPLNPPGKCQDKSG", "length": 292, "header": "tr|A0A5G2QLI1-1|A0A5G2QLI1_PIG Isoform 1 of Chromosome 3 C2orf73 homolog OS=Sus scrofa OX=9823 GN=C3H2orf73 PE=4 SV=1 CANONICAL=A0A5G2QLI1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1/entry", "sequence": { "sequence": "MRTSELRYRRQHKIEDAGIPYITEKKEEINDEKKPGKSIQHSKPCVRRGRVCYAKFINTNARTCNEPVPYMDPKNEPENQGDWWSHGKGLENPFQPPYDTKSTQRSDFQKPACPLVSPVKHSKLQKPSYGIVPLASLDTSAECQKNFIERISFIHQYDARKTPNEPIRGKRHGVFVQTEIKPGSRPIVPKRTEVLLNAPGLCSSEWSQKTEKGNSAESKMISPGLCRQNSQELLETKTHLSETDVREAANACPRSPERREKIADPYQITAVNALLTSHAPLNPPGKCQDKSG", "length": 292, "header": "tr|A0A5G2QLI1-1|A0A5G2QLI1_PIG Isoform 1 of Chromosome 3 C2orf73 homolog OS=Sus scrofa OX=9823 GN=C3H2orf73 PE=4 SV=1 CANONICAL=A0A5G2QLI1-1" }, "locus": { "chromosome": "3", "start_pos": 86919180, "end_pos": 86887332, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084329.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084329.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065691.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065691.1" } ] } }, { "isoform_ac": "F1SQJ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ9/entry", "sequence": { "sequence": "MEGKEDKQQQHKIEDAGIPYITEKKEEINDEKKPGKSIQHSKPCVRRGRVCYAKFINTNARTCNEPVPYMDPKNEPENQGDWWSHGKGLENPFQPPYDTKSTQRSDFQKPACPLVSPVKHSKLQKPSYGIVPLASLDTSAECQKNFIERISFIHQYDARKTPNEPIRGKRHGVFVQTEIKPGSRPIVPKRTEVLLNAPGLCSSEWSQKTEKGNSAESKMISPGLCRQNSQELLETKTHLSETDVREAANACPRSPERREKIADPYQITAVNALLTSHAPLNPPGKCQDKSG", "length": 291, "header": "tr|F1SQJ9-1|F1SQJ9_PIG Computationally mapped isoform of Chromosome 3 C2orf73 homolog OS=Sus scrofa OX=9823 GN=CIMIP6 PE=4 SV=3 CANONICAL=A0A5G2QLI1-1" }, "locus": { "chromosome": "3", "start_pos": 86921986, "end_pos": 86887332, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009209.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009209.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008976.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008976.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516432", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516432", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6QQL5-1", "protein_name": "Ciliary microtubule inner protein 6", "gene_name": "CIMIP6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGKEDKQQQHKIEDAGILYVTEKEEFKHEKKPGKSIQHSKPCVGRGRVYYAKFINTNVRTCNEPVPYIDVKKEPENQGDWWPHGKGLENPFQPPYDTKSTQRSDFKKPTCPLVSPVKHSKLQKPSYGIVPLVSPDASAELQRNFKEHISFIHQYDARKTPNEPIRGKRHGVFVQTEIKPGSRPTVPERTEVLLNASGSCSSEQSKKTEKGNSAESKMISPGLCRQNSQELLETKTHLSETDIRVAANASLRRPEKREKTAKVFQIAVVNALLTRHDPLSPPIKSQDKSG", "length": 290 }, "evidence": [ { "id": "A0A5G2QLI1", "url": "https://omabrowser.org/oma/group/A0A5G2QLI1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A4P5-1", "protein_name": "Similar to human chromosome 2 open reading frame 73", "gene_name": "Cimip6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGEEKQQQHKIEDADIACVTEKKEEIKNEKSPEESTQQSKPCVDRRRVNYAKFIYTNARTYNDPVPYIDNKGPEKQRKWWFHDEAPTYVSQPSYDTNSIQRSDFQKPACPLVLPVKHSKMQKPSYGIVPLTSLDVSEEHEDNFVEYISFIHQYDSRRTPNEPIRGKRHGTFVQRKIKPETMPIAPKGPEVLLNTPGSGSSEQPQKTDKGNSSGDNVTSPRLCQKNSQELLET", "length": 233 }, "evidence": [ { "id": "A0A5G2QLI1", "url": "https://omabrowser.org/oma/group/A0A5G2QLI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SPV6-1", "protein_name": "Ciliary microtubule inner protein 6", "gene_name": "Cimip6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGEEKQQQHKTEDDGIACVAERKVEIKNEKSPGKSTQHPKPCVDRRRVNYAKFIHTNARTYNEPVPYIDNKGPEKQRKWWFHNEAPKHVSQPSYDTKSVQRSDFQKPACPLVLPVKHSRMQKPSCGIVPLTSLDVSGEHENNFVEYISFIHQYDARRTPNEPIKGKKHGTFVQREIKLGAMPIVPKAPEVLLNTLESGSSEQPQKTDKGNSSGDKVTSPGLCQQNSQELLET", "length": 233 }, "evidence": [ { "id": "A0A5G2QLI1", "url": "https://omabrowser.org/oma/group/A0A5G2QLI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N5S3-1", "protein_name": "Ciliary microtubule inner protein 6", "gene_name": "CIMIP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEKEDKHQQHKIEDAAITYVSENEEIKHEEKPGKSIHHSKSHVGRGRIYYAKFINTNARTYNEPFPYIDPKKGPEIQGDWWSHGKALEPVFLPPYDSKSTQRSDFQKPSCPLVLPVKHSKMQKPSCGIVPLASPGTSAELQNNFIEYISFIHQYDARKTPNEPLQGKRHGAFVQREIKPGSRPTVPKGAEVLLNTPGSRSSEQSKKTEKGNSAESRMISPGLCQQNSQELLEPKTHLSETDVRQAAKACPSTPESREKTSGATQTTVGDALFTRHKPLNPPIKKSE", "length": 287 }, "evidence": [ { "id": "A0A5G2QLI1", "url": "https://omabrowser.org/oma/group/A0A5G2QLI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLI1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLI1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLI1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLI8-1", "uniprot_ac": "A0A5G2QLI8", "uniprot_id": "A0A5G2QLI8_PIG", "mass": { "chemical_mass": 79863.0, "monoisotopic_mass": 79863.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QLI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QLI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLI8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLI8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045644", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045644", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKAEYTVFSNAHGTVSRINHILGHKANLNKFRSIEIISSIFSDHSSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSISIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTQKLLELINKFSKVAGYKINIQKSVAFLYTTNETLEKEYKKMIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTLFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQDRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTPTPCTKINSKWLKDLNI", "length": 685, "header": "tr|A0A5G2QLI8-1|A0A5G2QLI8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QLI8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKAEYTVFSNAHGTVSRINHILGHKANLNKFRSIEIISSIFSDHSSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSISIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTQKLLELINKFSKVAGYKINIQKSVAFLYTTNETLEKEYKKMIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTLFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQDRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTPTPCTKINSKWLKDLNI", "length": 685, "header": "tr|A0A5G2QLI8-1|A0A5G2QLI8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QLI8-1" }, "locus": { "chromosome": "13", "start_pos": 4849724, "end_pos": 4847274, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069818.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069818.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065701.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065701.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLI8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 685, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLI8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLI8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI8" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 489, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 462, "end_pos": 464 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLJ1-1", "uniprot_ac": "A0A5G2QLJ1", "uniprot_id": "A0A5G2QLJ1_PIG", "mass": { "chemical_mass": 32914.0, "monoisotopic_mass": 32914.0 }, "refseq": {}, "gene_names": [ { "name": "DPPA4", "type": "recommended", "evidence": [ { "id": "A0A5G2QLJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ] } ], "protein_names": [ { "name": "Developmental pluripotency associated 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QLJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPPA4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1", "locus": { "chromosome": "13", "start_pos": 150176761, "end_pos": 150165462, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000044778", "url": "https://www.ensembl.org/id/ENSSSCG00000044778" } ] } } ], "crossref": [ { "id": "A0A5G2QLJ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044778", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044778", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR025891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16073:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16073:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VKKISLLWTLTFLSMERAKDKECNSAKKSEEEEQGASGEASMQNNSRNEAKRKRSMKNDEATCPKKMPQCCSGMKPQKMQIPPLPSILPPANLIHRDVLRAWCQQLKLSTKGRKLDGYKRLCEHAYPNQKDFPATAEEARILSPSRRKLMMDRGELPLEASDKKMSFGGAAPAEVGPALEGAAAHEGVVSTSDTEAVFASWSRIVSEAGRVQAVESRETCEVKWCVVHGRSLPGNTEGWVHLQFHAGQAWVPEKRRRVSALFLLPANTFPPPYLEDNMLCPECVQRNKVLTKSLQ", "length": 295, "header": "tr|A0A5G2QLJ1-1|A0A5G2QLJ1_PIG Isoform 1 of Developmental pluripotency associated 4 OS=Sus scrofa OX=9823 GN=DPPA4 PE=4 SV=1 CANONICAL=A0A5G2QLJ1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1/entry", "sequence": { "sequence": "VKKISLLWTLTFLSMERAKDKECNSAKKSEEEEQGASGEASMQNNSRNEAKRKRSMKNDEATCPKKMPQCCSGMKPQKMQIPPLPSILPPANLIHRDVLRAWCQQLKLSTKGRKLDGYKRLCEHAYPNQKDFPATAEEARILSPSRRKLMMDRGELPLEASDKKMSFGGAAPAEVGPALEGAAAHEGVVSTSDTEAVFASWSRIVSEAGRVQAVESRETCEVKWCVVHGRSLPGNTEGWVHLQFHAGQAWVPEKRRRVSALFLLPANTFPPPYLEDNMLCPECVQRNKVLTKSLQ", "length": 295, "header": "tr|A0A5G2QLJ1-1|A0A5G2QLJ1_PIG Isoform 1 of Developmental pluripotency associated 4 OS=Sus scrofa OX=9823 GN=DPPA4 PE=4 SV=1 CANONICAL=A0A5G2QLJ1-1" }, "locus": { "chromosome": "13", "start_pos": 150176432, "end_pos": 150165500, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080380.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080380.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062940.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062940.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "system development", "id": "GO:0048731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048731", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLJ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 295, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLJ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLJ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLJ1" }, { "id": "PF14047", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14047" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Developmental pluripotency-associated protein 2/4 C-terminal", "eco_id": "ECO_0000259", "start_pos": 222, "end_pos": 287, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 44, "end_pos": 46 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLK3-1", "uniprot_ac": "A0A5G2QLK3", "uniprot_id": "A0A5G2QLK3_PIG", "mass": { "chemical_mass": 65030.0, "monoisotopic_mass": 65030.0 }, "refseq": {}, "gene_names": [ { "name": "C2CD6", "type": "recommended", "evidence": [ { "id": "A0A5G2QLK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3" } ] } ], "protein_names": [ { "name": "C2 calcium dependent domain containing 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QLK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2CD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLK3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016107", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016107", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048363", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048363", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21665", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21665", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21665:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21665:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IEPAQEMAKVSNTTDNRNGRVHSRHIDPIVQKIPYTNLENVQARGFSAAARNFQERGKTSNLPKDEAKEGTGQRLLNVSRGLAGGGCPLPDHLKVGCLAIHIKNCKHFTPKISLQLYSDLFIRISINNVVKCTKPYSLLPPNDEKNAIIAFDEVKFFSVQVPRRQDNEKNNIYLELMRYDNTKQCLVLVGSVQVHLYEVIQKGCFTEDLQMLNKNTFICRMEVEFMFSYGNFGYGFSHQLKPLQKIIEPSMFMNVAPPPERTDPVTNVIIPQPIEYPAFLSPDLKVTVGAPPAAPQMKQPSVVRLEKLQQQPRERLEKMKKEYRQLSTWIEKASYLEGILTPRLEHKELKEKAETIPSEFLDNKKGLTLSTLNHSGENDSNVVAPKNDASTKQMDSPFTTVPRLMSTEEDEIPSLEERQQEAVPERKMKNVLFSSEGKLKDRYQGLFKIDSSPSEVAFSPKEYISPSFSPEYIEFKPNYQDCSDRFEDLHVTSFKHLEKVKSRARLGRSPDDSHNHLKCTTRPYTAPEINKRGESYTGKFKSPRMVSAGLVHINDPVSDYENHKMRPKKN", "length": 570, "header": "tr|A0A5G2QLK3-1|A0A5G2QLK3_PIG Isoform 1 of C2 calcium dependent domain containing 6 OS=Sus scrofa OX=9823 GN=C2CD6 PE=4 SV=2 CANONICAL=A0A5G2QLK3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3/entry", "sequence": { "sequence": "IEPAQEMAKVSNTTDNRNGRVHSRHIDPIVQKIPYTNLENVQARGFSAAARNFQERGKTSNLPKDEAKEGTGQRLLNVSRGLAGGGCPLPDHLKVGCLAIHIKNCKHFTPKISLQLYSDLFIRISINNVVKCTKPYSLLPPNDEKNAIIAFDEVKFFSVQVPRRQDNEKNNIYLELMRYDNTKQCLVLVGSVQVHLYEVIQKGCFTEDLQMLNKNTFICRMEVEFMFSYGNFGYGFSHQLKPLQKIIEPSMFMNVAPPPERTDPVTNVIIPQPIEYPAFLSPDLKVTVGAPPAAPQMKQPSVVRLEKLQQQPRERLEKMKKEYRQLSTWIEKASYLEGILTPRLEHKELKEKAETIPSEFLDNKKGLTLSTLNHSGENDSNVVAPKNDASTKQMDSPFTTVPRLMSTEEDEIPSLEERQQEAVPERKMKNVLFSSEGKLKDRYQGLFKIDSSPSEVAFSPKEYISPSFSPEYIEFKPNYQDCSDRFEDLHVTSFKHLEKVKSRARLGRSPDDSHNHLKCTTRPYTAPEINKRGESYTGKFKSPRMVSAGLVHINDPVSDYENHKMRPKKN", "length": 570, "header": "tr|A0A5G2QLK3-1|A0A5G2QLK3_PIG Isoform 1 of C2 calcium dependent domain containing 6 OS=Sus scrofa OX=9823 GN=C2CD6 PE=4 SV=2 CANONICAL=A0A5G2QLK3-1" }, "locus": { "chromosome": "15", "start_pos": 105250386, "end_pos": 105106622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085239.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085239.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065721.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065721.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 570, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLK3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLK3" }, { "id": "PF15729", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15729" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation channel sperm-associated targeting subunit tau C2", "eco_id": "ECO_0000259", "start_pos": 95, "end_pos": 230, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLP2-1", "uniprot_ac": "A0A5G2QLP2", "uniprot_id": "A0A5G2QLP2_PIG", "mass": { "chemical_mass": 10494.0, "monoisotopic_mass": 10494.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLP2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044896", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044896", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSIMSSAYSDSLTSSLPIWIPFIFFVCLTTVARPSTTMLNSSGESGHPCLVPDFTMERYSRLLNRGEICSDYMMVVWIRALIIRMERNNKC", "length": 92, "header": "tr|A0A5G2QLP2-1|A0A5G2QLP2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLP2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2/entry", "sequence": { "sequence": "MCSIMSSAYSDSLTSSLPIWIPFIFFVCLTTVARPSTTMLNSSGESGHPCLVPDFTMERYSRLLNRGEICSDYMMVVWIRALIIRMERNNKC", "length": 92, "header": "tr|A0A5G2QLP2-1|A0A5G2QLP2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLP2-1" }, "locus": { "chromosome": "1", "start_pos": 205506062, "end_pos": 205458288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064960.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064960.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 92, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLP2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLQ4-1", "uniprot_ac": "A0A5G2QLQ4", "uniprot_id": "A0A5G2QLQ4_PIG", "mass": { "chemical_mass": 11357.0, "monoisotopic_mass": 11357.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045942", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045942", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAILTGVRWYLTVVLICISVISDVEHLFLCLLAICMYSLDRYLFRSSAYFSIGLFVILLSCMSCLCILEIKPMSFASFAIFFSHCVGCLCFLCCAKACTFD", "length": 101, "header": "tr|A0A5G2QLQ4-1|A0A5G2QLQ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLQ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4/entry", "sequence": { "sequence": "MAILTGVRWYLTVVLICISVISDVEHLFLCLLAICMYSLDRYLFRSSAYFSIGLFVILLSCMSCLCILEIKPMSFASFAIFFSHCVGCLCFLCCAKACTFD", "length": 101, "header": "tr|A0A5G2QLQ4-1|A0A5G2QLQ4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLQ4-1" }, "locus": { "chromosome": "1", "start_pos": 99742869, "end_pos": 99741448, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073132.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073132.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063010.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063010.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLQ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLQ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLQ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLQ8-1", "uniprot_ac": "A0A5G2QLQ8", "uniprot_id": "A0A5G2QLQ8_PIG", "mass": { "chemical_mass": 20802.0, "monoisotopic_mass": 20802.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048333", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048333", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWGESRVSVPSSYCTFHPASLPLFHVSLPCTSTWWLVSASLLPIKDDMVFPGTMCESIHPLRYHSGLGPCKKSPWTLVRYRGNANWWRTVWRFLRNLKRELSYDPAIPFLGIYLKKKKLIIKDAYTPMFIAALFTIAKIRKQPKCPSADEWIKKRWYTHTHTHTHTHTHTHRKTSQP", "length": 178, "header": "tr|A0A5G2QLQ8-1|A0A5G2QLQ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLQ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8/entry", "sequence": { "sequence": "MGWGESRVSVPSSYCTFHPASLPLFHVSLPCTSTWWLVSASLLPIKDDMVFPGTMCESIHPLRYHSGLGPCKKSPWTLVRYRGNANWWRTVWRFLRNLKRELSYDPAIPFLGIYLKKKKLIIKDAYTPMFIAALFTIAKIRKQPKCPSADEWIKKRWYTHTHTHTHTHTHTHRKTSQP", "length": 178, "header": "tr|A0A5G2QLQ8-1|A0A5G2QLQ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLQ8-1" }, "locus": { "chromosome": "9", "start_pos": 12788710, "end_pos": 12788177, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077343.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077343.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063015.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLQ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 178, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLQ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLQ8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLU3-1", "uniprot_ac": "A0A5G2QLU3", "uniprot_id": "A0A5G2QLU3_PIG", "mass": { "chemical_mass": 29970.0, "monoisotopic_mass": 29970.0 }, "refseq": {}, "gene_names": [ { "name": "KCTD11", "type": "recommended", "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD11", "type": "recommended", "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3/entry#names_and_taxonomy" } ] }, { "name": "KCASH1 protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3/entry#names_and_taxonomy" } ] }, { "name": "Potassium channel tetramerization domain-containing protein 11", "type": "synonym", "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3/entry#names_and_taxonomy" } ] }, { "name": "RING-type E3 ubiquitin transferase subunit KCTD11", "type": "synonym", "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCTD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3", "locus": { "chromosome": "12", "start_pos": 52699649, "end_pos": 52698834, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000042089", "url": "https://www.ensembl.org/id/ENSSSCG00000042089" } ] } } ], "crossref": [ { "id": "A0A5G2QLU3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042089", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042089", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19329", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19329", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ISPPPVPSPPPAFGGPVTLNVGGTLYSTTLETLTRFPDSMLGAMFRAGTPMTPNLSPQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASRGTPAPTAALLHADVESSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDPECLGAMRARFGVANDDRAEGGPHFRLEWAPRPSELPEVEYQRLGLQPLWTGGPGEPREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH", "length": 271, "header": "tr|A0A5G2QLU3-1|A0A5G2QLU3_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD11 OS=Sus scrofa OX=9823 GN=KCTD11 PE=4 SV=1 CANONICAL=A0A5G2QLU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3/entry", "sequence": { "sequence": "ISPPPVPSPPPAFGGPVTLNVGGTLYSTTLETLTRFPDSMLGAMFRAGTPMTPNLSPQGGGHYFIDRDGKAFRHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASRGTPAPTAALLHADVESSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDPECLGAMRARFGVANDDRAEGGPHFRLEWAPRPSELPEVEYQRLGLQPLWTGGPGEPREVVGTPSFLEEVLRVALEHGFRLDSVFPDPEDLLNSRSLRFVRH", "length": 271, "header": "tr|A0A5G2QLU3-1|A0A5G2QLU3_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD11 OS=Sus scrofa OX=9823 GN=KCTD11 PE=4 SV=1 CANONICAL=A0A5G2QLU3-1" }, "locus": { "chromosome": "12", "start_pos": 52699646, "end_pos": 52698834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071401.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071401.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065827.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065827.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 125, "start_aa": "Thr", "end_pos": 125, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr125", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" }, { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of neuron differentiation", "id": "GO:0045666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045666", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" }, { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 271, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLU3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU3" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 120, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 125 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLV3-1", "uniprot_ac": "A0A5G2QLV3", "uniprot_id": "A0A5G2QLV3_PIG", "mass": { "chemical_mass": 21314.0, "monoisotopic_mass": 21314.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QLV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049961", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049961", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QLV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GLNIRQDTIKLLEENTSKTFSDINLTNVFSGQSPKATEIKTKINQWDLIKLRSFCTAKETIKKKKKKKRQLTEWEKIVSNDATDKGLISKICKQLMQLNSKKANNPMEKWAKDLNKHFSKEDIQMANKHMKKCSTSLTIREIQTKTTMRYHLRPVRMAIINKSTNNKCWRGCGEKRSLLHFW", "length": 182, "header": "tr|A0A5G2QLV3-1|A0A5G2QLV3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLV3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3/entry", "sequence": { "sequence": "GLNIRQDTIKLLEENTSKTFSDINLTNVFSGQSPKATEIKTKINQWDLIKLRSFCTAKETIKKKKKKKRQLTEWEKIVSNDATDKGLISKICKQLMQLNSKKANNPMEKWAKDLNKHFSKEDIQMANKHMKKCSTSLTIREIQTKTTMRYHLRPVRMAIINKSTNNKCWRGCGEKRSLLHFW", "length": 182, "header": "tr|A0A5G2QLV3-1|A0A5G2QLV3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QLV3-1" }, "locus": { "chromosome": "9", "start_pos": 73925828, "end_pos": 73925283, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078586.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078586.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065557.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065557.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLV3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLV3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLV3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 161, "end_pos": 163 }, { "start_pos": 24, "end_pos": 26 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QLX4-1", "uniprot_ac": "A0A5G2QLX4", "uniprot_id": "A0A5G2QLX4_PIG", "mass": { "chemical_mass": 27881.0, "monoisotopic_mass": 27881.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QLX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QLX4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLX4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049932", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049932", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDIRNKLKEAEEQISEVEDRLEEIMDAEHKREKRLKTNEESLRELWDNVKRTNICIIGVPEGEEREKGTEKIFQEIIAENFPNMGNEPLIQIQEAQQVPYKINPRRNTPRHIIIKLTKIKDKEKILKAAREKKQVTYKGTPIRLLADFSAETLQSRREWHDILNVMKGKNLQPRLLYPARLSFRFEGEIKTFSDKQKLREFKYSNTKPTLKKIPKRSSLNKKRNVKKKRLQNH", "length": 234, "header": "tr|A0A5G2QLX4-1|A0A5G2QLX4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QLX4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4/entry", "sequence": { "sequence": "MQDIRNKLKEAEEQISEVEDRLEEIMDAEHKREKRLKTNEESLRELWDNVKRTNICIIGVPEGEEREKGTEKIFQEIIAENFPNMGNEPLIQIQEAQQVPYKINPRRNTPRHIIIKLTKIKDKEKILKAAREKKQVTYKGTPIRLLADFSAETLQSRREWHDILNVMKGKNLQPRLLYPARLSFRFEGEIKTFSDKQKLREFKYSNTKPTLKKIPKRSSLNKKRNVKKKRLQNH", "length": 234, "header": "tr|A0A5G2QLX4-1|A0A5G2QLX4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QLX4-1" }, "locus": { "chromosome": "13", "start_pos": 766350, "end_pos": 638667, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085486.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085486.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065872.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065872.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QLX4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 234, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QLX4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QLX4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QLX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 148, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QLX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 151, "end_pos": 215, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QLX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX4" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 48, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM05-1", "uniprot_ac": "A0A5G2QM05", "uniprot_id": "A0A5G2QM05_PIG", "mass": { "chemical_mass": 60046.0, "monoisotopic_mass": 60046.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QM05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05", "locus": {} } ], "crossref": [ { "id": "A0A5G2QM05", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042430", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042430", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QM05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AGDPATLEYTVTGTPELKPKWYKDWRPLVASKKYRLSFKNNVAQLKFYSAELHDSGQYTFEISNEVGSSSCETTFTVLVTETKITDGTCRLDCKIAGSLPMRVSWFKDGKEVTSSDRYRIAFVEGTASLEISRVDMNDAGNFTCRATNSVGSKDCSGALIVQEPPSFVIKPASKDILPGSAVCLKSTFQGSTPLTIRWFKGNKELVSGGSCYITREALESSLELYSVKTSDSGTYTCKVSNVAGAMECSADLFVKEPATFVEKLEPSQLLKKGDATQLACKVAGTPPIKITWFANDREIKESSKHKMSFVESTAVLRLTDVAVEDSGEYMCEAQNEAGSDHCGSILIVKESPYFTKEFKPIEVLKEYDVMLLAEVAGTPPFEITWFKDNTTLRSGRKYKTFIQDQLVSLQILKFVAADAGEYQCRVTNEVGSSTCSARVTLREPPAFVKKIESTSSLRGGTAAFQATLKGSLPITVTWLKDNDEITEDDNIRMTFENNVASLYLSGIEVKHDGKYVCQAKNDAGIQRCSALLSVKELYRKYKLVG", "length": 545, "header": "tr|A0A5G2QM05-1|A0A5G2QM05_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM05-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05/entry", "sequence": { "sequence": "AGDPATLEYTVTGTPELKPKWYKDWRPLVASKKYRLSFKNNVAQLKFYSAELHDSGQYTFEISNEVGSSSCETTFTVLVTETKITDGTCRLDCKIAGSLPMRVSWFKDGKEVTSSDRYRIAFVEGTASLEISRVDMNDAGNFTCRATNSVGSKDCSGALIVQEPPSFVIKPASKDILPGSAVCLKSTFQGSTPLTIRWFKGNKELVSGGSCYITREALESSLELYSVKTSDSGTYTCKVSNVAGAMECSADLFVKEPATFVEKLEPSQLLKKGDATQLACKVAGTPPIKITWFANDREIKESSKHKMSFVESTAVLRLTDVAVEDSGEYMCEAQNEAGSDHCGSILIVKESPYFTKEFKPIEVLKEYDVMLLAEVAGTPPFEITWFKDNTTLRSGRKYKTFIQDQLVSLQILKFVAADAGEYQCRVTNEVGSSTCSARVTLREPPAFVKKIESTSSLRGGTAAFQATLKGSLPITVTWLKDNDEITEDDNIRMTFENNVASLYLSGIEVKHDGKYVCQAKNDAGIQRCSALLSVKELYRKYKLVG", "length": 545, "header": "tr|A0A5G2QM05-1|A0A5G2QM05_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM05-1" }, "locus": { "chromosome": "15", "start_pos": 84426239, "end_pos": 84423608, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070006.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070006.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065907.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065907.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM05-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 545, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM05-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM05" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QM05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM05" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 156, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 389, "end_pos": 391 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM20-1", "uniprot_ac": "A0A5G2QM20", "uniprot_id": "A0A5G2QM20_PIG", "mass": { "chemical_mass": 10583.0, "monoisotopic_mass": 10583.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QM20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20", "locus": {} } ], "crossref": [ { "id": "A0A5G2QM20", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM20", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050823", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050823", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QM20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM20-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLACLVLAFYILNQIFKKKTVNHFIYPTTQGIHGTRKKNIYAEEKQKIIPQNTHTHSHIGGEKEEIIFLTIDLIPFLQPILNNLVSILTIVL", "length": 92, "header": "tr|A0A5G2QM20-1|A0A5G2QM20_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM20-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM20-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20/entry", "sequence": { "sequence": "MLACLVLAFYILNQIFKKKTVNHFIYPTTQGIHGTRKKNIYAEEKQKIIPQNTHTHSHIGGEKEEIIFLTIDLIPFLQPILNNLVSILTIVL", "length": 92, "header": "tr|A0A5G2QM20-1|A0A5G2QM20_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM20-1" }, "locus": { "chromosome": "2", "start_pos": 96124560, "end_pos": 96124056, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067049.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067049.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065922.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065922.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM20-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 92, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM20-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM20" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM26-1", "uniprot_ac": "A0A5G2QM26", "uniprot_id": "A0A5G2QM26_PIG", "mass": { "chemical_mass": 24923.0, "monoisotopic_mass": 24923.0 }, "refseq": { "ac": "XP_003481592", "name": "chromosome 5 C22orf23 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592" }, "gene_names": [ { "name": "C5H22orf23", "type": "recommended", "evidence": [ { "id": "A0A5G2QM26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26" } ] }, { "name": "C22orf23", "type": "synonym", "evidence": [ { "id": "XP_003481592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592" }, { "id": "A0A5G2QM26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26" } ] }, { "name": "C5H22orf23", "type": "synonym", "evidence": [ { "id": "XP_003481592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592" } ] } ], "protein_names": [ { "name": "Chromosome 5 C22orf23 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QM26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26/entry#names_and_taxonomy" } ] }, { "name": "UPF0193 protein EVG1", "type": "synonym", "evidence": [ { "id": "XP_003481592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592" } ] }, { "name": "chromosome 5 C22orf23 homolog", "type": "synonym", "evidence": [ { "id": "XP_003481592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C5H22orf23", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26", "locus": {} } ], "crossref": [ { "id": "A0A5G2QM26", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM26", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000117", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000117", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155721", "url": "https://www.ncbi.nlm.nih.gov/gene/100155721", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155721", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155721", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MMAYGKD", "url": "https://omabrowser.org/oma/group/MMAYGKD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QM26", "url": "https://www.orthodb.org/?gene=A0A5G2QM26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28348:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28348:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QM26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDALPLHCSPTSSQRVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREQFRPQATRDLEKEKRRLQNIFATGKEPEERKRKPPPVQQEAPAPELDRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEMEDLDRKRSEELRKALATP", "length": 217, "header": "tr|A0A5G2QM26-1|A0A5G2QM26_PIG Isoform 1 of Chromosome 5 C22orf23 homolog OS=Sus scrofa OX=9823 GN=C5H22orf23 PE=4 SV=1 CANONICAL=A0A5G2QM26-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26/entry", "sequence": { "sequence": "MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRAMMKESKLTNFQQRHIMDTMKRGDALPLHCSPTSSQRVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREQFRPQATRDLEKEKRRLQNIFATGKEPEERKRKPPPVQQEAPAPELDRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEMEDLDRKRSEELRKALATP", "length": 217, "header": "tr|A0A5G2QM26-1|A0A5G2QM26_PIG Isoform 1 of Chromosome 5 C22orf23 homolog OS=Sus scrofa OX=9823 GN=C5H22orf23 PE=4 SV=1 CANONICAL=A0A5G2QM26-1" }, "locus": { "chromosome": "5", "start_pos": 9924082, "end_pos": 9918244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091165.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091165.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065080.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065080.1" } ] } }, { "isoform_ac": "A0A5G2RJH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJH6/entry", "sequence": { "sequence": "MASQERVETVTKGTGFWRCPKPAAYTPRTCELLRGGDALPLHCSPTSSQRVLPARQPASAIYLPPILAARSHLRPASLCQANGAYSREQFRPQATRDLEKEKRRLQNIFATGKEPEERKRKPPPVQQEAPAPELDRFEELVKEIQERKAFLADMEALGQGRRYRGVILTEISQKLQEMEDLDRKRSEELRKALATP", "length": 196, "header": "tr|A0A5G2RJH6-1|A0A5G2RJH6_PIG Computationally mapped isoform of Chromosome 5 C22orf23 homolog OS=Sus scrofa OX=9823 GN=C5H22orf23 PE=4 SV=1 CANONICAL=A0A5G2QM26-1" }, "locus": { "chromosome": "5", "start_pos": 9924082, "end_pos": 9918244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088095.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088095.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072014.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072014.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155721", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155721", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7I2P0-1", "protein_name": "UPF0193 protein EVG1 isoform X2", "gene_name": "C2H22orf23", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASQERVDAVSNGTGFQRCGKQLAYTPGTCELLRVMMKESRLTNFQQRHIMDTVKRGAPLPLQCDPTSSHRGSPSKKPATATYLPPILATHSHLRPASMCQANGAYSREQFKPQATRDLEKEKRRLQNIFANGKDIEERKRAPHGLQEDPAPELDRFEELVKEIQDRKEFLAAMEALGQGKQYRGMILAEISQKLQEMEEIDRSRSEKLRKALATT", "length": 216 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E7F0P7-1", "protein_name": "UPF0193 protein EVG1", "gene_name": "si:dkey-43k4.3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMASGSKYKESGIPQYRTDTRQLIKLMMQESRLTDFQQRQINNKLKNGGALPITFYSSPLEPNTPSETRVTRVGTLVGQQQKRSAERCRAGDNYKREQFLPSAARDLEKEKRKLQNLLSTGQKDAGPTHSQRESTERREQPVDRFQEVLDEIEDRRQFLEEMMSLGKGHQYQQLINTEISQKICELEEIDKKRSEELRTPQLTGKEEQ", "length": 208 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N6I1-1", "protein_name": "Chromosome 5 C22orf23 homolog", "gene_name": "C5H22orf23", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASQERVETVTKGTGFWRCPKPTTYTPGTCELLRVMMKESKLTNFQQRHITDTMKRGDTLPLQCNPTSSQRVLPSKQPSSAIYLPPILAARSHLRPAWRCQANGAYSREQFKPQATRDLEMEKRRLQNIFATGKEPEERKRKPHPLRQEDPAPKLDRFEELVKEIQERKEFLADMEALGQGRQYRGIILTEISQKLQEMEDIDHKRSEELRKALATT", "length": 217 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7FLU1-1", "protein_name": "Similar to human chromosome 22 open reading frame 23", "gene_name": "C7h22orf23", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNPPMASQERVDAVANGTGFHRCRKQAAYTPGTCELLRVMMKESKLTNFQQRHIMDTMKRGAPLPLQCNPTSSQRGSPSKKSAAAIYLPPILATHTHLRPASLCQANGAYSREQFKPQATRDLEKEKRRLQNIFATGKDMEERKKVPHVQQEDPAPELDRFDELVKEIQDRKEFLAAMEALGQGKQYRGIILAEISQKLREMEDIDRRRSKELRKALTTT", "length": 220 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BZE7-1", "protein_name": "UPF0193 protein EVG1", "gene_name": "C22orf23", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRVMMKESKLTNIQQRHIMDIMKRGDALPLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT", "length": 217 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9S1-1", "protein_name": "UPF0193 protein EVG1 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQERVDSVTKGTGFRRCRKQAGYTPGTCELLRVMMKESKLTNFQQRHIMDTMKRGAPLPLQCNPTSSLRGSPSKKAASAIYLPPILATHSHLRPASLCQANGAYSREQFKPQATRDLEKEKRRLQNIFATGKDKEERKKVPHVRQEDPAPELDRFDELVKEIQDRKEFLAAMEALGQGRQYRSIILAEISQKLREMEDIDRRRSKELRKALATT", "length": 216 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSS7-1", "protein_name": "UPF0193 protein EVG1 homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRHRFNNVQIKALPGGLMAHHEPDADGGQPGSQKLPMWPSERIPPGGAGAFHSAKVQYSKETADLIRLLVKESKMSMLVRKQIDESLRNGEPLPLPEPPRPNTNNDPDKETLAILDRARNAKRKNLRQIEASGAYKQSYYRPPADNRMHGEKAKSQLQFTMAGTHLPDPAIKPRRRPREEQLVTEEDLINELLDQINERAEWLTEMESMGQGKKYRPEIRDQIAERLRRIQALESKMKMKSNGGFRFVD", "length": 250 }, "evidence": [ { "id": "A0A5G2QM26", "url": "https://omabrowser.org/oma/group/A0A5G2QM26/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM26-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 217, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM26-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM26" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM34-1", "uniprot_ac": "A0A5G2QM34", "uniprot_id": "A0A5G2QM34_PIG", "mass": { "chemical_mass": 20733.0, "monoisotopic_mass": 20733.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QM34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34", "locus": {} } ], "crossref": [ { "id": "A0A5G2QM34", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM34", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041059", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041059", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QM34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIAQPLVMNFVVFRREVELQSFYSAILIPGFYFVSLGMFIHKYFILFDVMVNGIASLISLSDLLLSVYGNAVDFSALILYHVTLPNSLMSSNSFLVVSLGFSRYSIMSFANSDSLSSSFPIWIPFISFSSLIAVARISKTVLNSNGETGHPCLVPDLSRNSFRFSTLRMMLALGLPYMTFIMLR", "length": 185, "header": "tr|A0A5G2QM34-1|A0A5G2QM34_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM34-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34/entry", "sequence": { "sequence": "MKIAQPLVMNFVVFRREVELQSFYSAILIPGFYFVSLGMFIHKYFILFDVMVNGIASLISLSDLLLSVYGNAVDFSALILYHVTLPNSLMSSNSFLVVSLGFSRYSIMSFANSDSLSSSFPIWIPFISFSSLIAVARISKTVLNSNGETGHPCLVPDLSRNSFRFSTLRMMLALGLPYMTFIMLR", "length": 185, "header": "tr|A0A5G2QM34-1|A0A5G2QM34_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM34-1" }, "locus": { "chromosome": "13", "start_pos": 54389310, "end_pos": 54388756, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068936.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068936.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063156.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063156.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM34-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 185, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM34-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM34" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM68-1", "uniprot_ac": "A0A5G2QM68", "uniprot_id": "A0A5G2QM68_PIG", "mass": { "chemical_mass": 50301.0, "monoisotopic_mass": 50301.0 }, "refseq": {}, "gene_names": [ { "name": "CELF6", "type": "recommended", "evidence": [ { "id": "A0A5G2QM68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ] } ], "protein_names": [ { "name": "CUGBP Elav-like family member 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QM68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CELF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68", "locus": { "chromosome": "7", "start_pos": 60960119, "end_pos": 60930982, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001928", "url": "https://www.ensembl.org/id/ENSSSCG00000001928" } ] } } ], "crossref": [ { "id": "A0A5G2QM68", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM68", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001928", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001928", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12632", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12632", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12635", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12635", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12639", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12639", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA83", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHM1", "url": "https://www.uniprot.org/uniprotkb/F1SHM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAPGGSAPPAGPGPRLGFSTADSGVGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVADPQQAYAGMHHYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY", "length": 480, "header": "tr|A0A5G2QM68-1|A0A5G2QM68_PIG Isoform 1 of CUGBP Elav-like family member 6 OS=Sus scrofa OX=9823 GN=CELF6 PE=3 SV=2 CANONICAL=A0A5G2QM68-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68/entry", "sequence": { "sequence": "MAAAPGGSAPPAGPGPRLGFSTADSGVGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVADPQQAYAGMHHYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY", "length": 480, "header": "tr|A0A5G2QM68-1|A0A5G2QM68_PIG Isoform 1 of CUGBP Elav-like family member 6 OS=Sus scrofa OX=9823 GN=CELF6 PE=3 SV=2 CANONICAL=A0A5G2QM68-1" }, "locus": { "chromosome": "7", "start_pos": 60958890, "end_pos": 60931181, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067349.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067349.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065972.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065972.2" } ] } }, { "isoform_ac": "A0A5G2QRR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR6/entry", "sequence": { "sequence": "MISDLSSYTVWNSILNLLEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVADPQQAYAGMHHYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY", "length": 367, "header": "tr|A0A5G2QRR6-1|A0A5G2QRR6_PIG Computationally mapped isoform of CUGBP Elav-like family member 6 OS=Sus scrofa OX=9823 GN=CELF6 PE=4 SV=1 CANONICAL=A0A5G2QM68-1" }, "locus": { "chromosome": "7", "start_pos": 60958890, "end_pos": 60954266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066981.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066981.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067465.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067465.1" } ] } }, { "isoform_ac": "A0A8W4FA83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA83/entry", "sequence": { "sequence": "MAAAPGGSAPPAGPGPRLGFSTADSGVGMSGLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVADPQQAYAGMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY", "length": 453, "header": "tr|A0A8W4FA83-1|A0A8W4FA83_PIG Computationally mapped isoform of CUGBP Elav-like family member 6 OS=Sus scrofa OX=9823 GN=CELF6 PE=3 SV=1 CANONICAL=A0A5G2QM68-1" }, "locus": { "chromosome": "7", "start_pos": 60958890, "end_pos": 60931181, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095294.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095294.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075744.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075744.1" } ] } }, { "isoform_ac": "F1SHM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHM1/entry", "sequence": { "sequence": "MNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGQLGAFHPAPLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAAYPSAYAPVSTTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY", "length": 344, "header": "tr|F1SHM1-1|F1SHM1_PIG Computationally mapped isoform of CUGBP Elav-like family member 6 OS=Sus scrofa OX=9823 GN=CELF6 PE=4 SV=5 CANONICAL=A0A5G2QM68-1" }, "locus": { "chromosome": "7", "start_pos": 60958890, "end_pos": 60943997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002157.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002157.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002106.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002106.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA splice site recognition", "id": "GO:0006376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006376", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM68-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 480, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM68-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM68" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QM68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM68" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 127, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 433, "end_pos": 435 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QM82-1", "uniprot_ac": "A0A5G2QM82", "uniprot_id": "A0A5G2QM82_PIG", "mass": { "chemical_mass": 11647.0, "monoisotopic_mass": 11647.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QM82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82", "locus": {} } ], "crossref": [ { "id": "A0A5G2QM82", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049484", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049484", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QM82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHCPSASRARHGHFVAQGQHSAHCSYSCGRQKAHLDARAPALGDRVGDRGPRRVDHGQEAHEAEAGRGKVHRVDIKRVGFWKLIRRQVEVTEHRWGRGSEEAL", "length": 104, "header": "tr|A0A5G2QM82-1|A0A5G2QM82_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM82-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QM82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82/entry", "sequence": { "sequence": "MSHCPSASRARHGHFVAQGQHSAHCSYSCGRQKAHLDARAPALGDRVGDRGPRRVDHGQEAHEAEAGRGKVHRVDIKRVGFWKLIRRQVEVTEHRWGRGSEEAL", "length": 104, "header": "tr|A0A5G2QM82-1|A0A5G2QM82_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QM82-1" }, "locus": { "chromosome": "11", "start_pos": 131733, "end_pos": 130708, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087862.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087862.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065713.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065713.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QM82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 104, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QM82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QM82" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMA2-1", "uniprot_ac": "A0A5G2QMA2", "uniprot_id": "A0A5G2QMA2_PIG", "mass": { "chemical_mass": 77637.0, "monoisotopic_mass": 77637.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MACPF domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QMA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMA2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMA2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042844", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042844", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22579", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22579", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR020864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039707", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039707", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31463", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31463", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31463:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31463:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QMA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GVNVTSTMALFLAPLLLFLLAAHSGMGEQGLHGFQSCKQMLNVSVLGALPGAGWDNLRNVELEQVLRRDYSQCLTSEDGEYLIPDQMSVVPRRESVVESRAELIDNWVNYTDIWAASINAEVSFLSKINGKFSTECQQVKKYNLEYKTVTMRVQIRHHIYSVKASESPDFHPAFLQHLLTLSEYLENNQTHEAEYLADMLVFRFGTHVLTDMEVGATLVQEDQVRRELVEGITQNKINITLAASALFFKKVNFAAEASWQKQNQLLQDYVRGTVASKIHSHGGVPFYPGITLQKWQESIGNRLVAIGRSGLPLPELLLPESLPQLPAPAVRRLAAAVQNAIKRYYAVNTHPGCLKLGEPGFDPQANVDDGSCKSSHRANFPFGGVFQECQVVSGKDAKDLCQPYRIANPLTGKASCPANYTASALSSQLKTWSEVRPECKKQCNRCWLFFQCCHTVCSNREYRKAVRLSASWCSASGASQPTTAGFLFGGLYSPGHPNPFTRAQTCPSSYYPLTLFGELKVCVSSDSELGAAPAVPFGGSTKYPMKCPAGYSQHQAYLFNGCQVLYCLPAGALLSQQLAAVRLPPFIPRPLLLNRTRAVSSSVAVDSNGQQVWVRLQGSNHWQQTSVRDLSLSTKFSSQPGSGTSFGTIFGSWMAAMVVVAALALGVSYGFRYYKKRGCRKPQEGIFTEGQKDYGATEATAEPHSV", "length": 706, "header": "tr|A0A5G2QMA2-1|A0A5G2QMA2_PIG Isoform 1 of MACPF domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMA2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2/entry", "sequence": { "sequence": "GVNVTSTMALFLAPLLLFLLAAHSGMGEQGLHGFQSCKQMLNVSVLGALPGAGWDNLRNVELEQVLRRDYSQCLTSEDGEYLIPDQMSVVPRRESVVESRAELIDNWVNYTDIWAASINAEVSFLSKINGKFSTECQQVKKYNLEYKTVTMRVQIRHHIYSVKASESPDFHPAFLQHLLTLSEYLENNQTHEAEYLADMLVFRFGTHVLTDMEVGATLVQEDQVRRELVEGITQNKINITLAASALFFKKVNFAAEASWQKQNQLLQDYVRGTVASKIHSHGGVPFYPGITLQKWQESIGNRLVAIGRSGLPLPELLLPESLPQLPAPAVRRLAAAVQNAIKRYYAVNTHPGCLKLGEPGFDPQANVDDGSCKSSHRANFPFGGVFQECQVVSGKDAKDLCQPYRIANPLTGKASCPANYTASALSSQLKTWSEVRPECKKQCNRCWLFFQCCHTVCSNREYRKAVRLSASWCSASGASQPTTAGFLFGGLYSPGHPNPFTRAQTCPSSYYPLTLFGELKVCVSSDSELGAAPAVPFGGSTKYPMKCPAGYSQHQAYLFNGCQVLYCLPAGALLSQQLAAVRLPPFIPRPLLLNRTRAVSSSVAVDSNGQQVWVRLQGSNHWQQTSVRDLSLSTKFSSQPGSGTSFGTIFGSWMAAMVVVAALALGVSYGFRYYKKRGCRKPQEGIFTEGQKDYGATEATAEPHSV", "length": 706, "header": "tr|A0A5G2QMA2-1|A0A5G2QMA2_PIG Isoform 1 of MACPF domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMA2-1" }, "locus": { "chromosome": "2", "start_pos": 12475113, "end_pos": 12472180, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089914.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089914.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063232.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063232.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMA2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 706, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMA2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMA2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA2" }, { "id": "PS51412", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51412" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MACPF", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 348, "start_aa": "Leu", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 238, "end_pos": 240 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 594, "end_pos": 596 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMA5-1", "uniprot_ac": "A0A5G2QMA5", "uniprot_id": "A0A5G2QMA5_PIG", "mass": { "chemical_mass": 60195.0, "monoisotopic_mass": 60195.0 }, "refseq": {}, "gene_names": [ { "name": "FAM114A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QMA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 114 member A1", "type": "synonym", "evidence": [ { "id": "A0A5G2QMA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM114A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5", "locus": { "chromosome": "8", "start_pos": 30274164, "end_pos": 30114635, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008785", "url": "https://www.ensembl.org/id/ENSSSCG00000008785" } ] } } ], "crossref": [ { "id": "A0A5G2QMA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008785", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008785", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12842:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12842:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05334", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05334", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AFB8", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B944", "url": "https://www.uniprot.org/uniprotkb/A0A287B944", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B944-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B944-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4J0", "url": "https://www.uniprot.org/uniprotkb/F1S4J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S4J0-1", "url": "https://www.uniprot.org/uniprotkb/F1S4J0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDDGDDTLATGDKDEKTDVPVSDTLPSDAPVLCDSATISNELSPANPRRDVPGNAAAQGAETADTGLTEPPEDPGAMGPPLNEEETEEALAECVDSVSLEAEPGSEVPLKEQSNPAVDSSPRGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRMHSVNSGSSEAAQPDTENEIPQTADAAADQSPAESPPTSPSSGSRGVLSAITNAVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTAERTAHYGMLFDEYQGLSHLEALEILSNESEGKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEVQGIEEKGEEFASMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQTVVPVDVAEESEDKTKKEEKEENAEGPEEKKEERKTKTVEEVYMLSIESLAKTARCIEQLHKVAELILHGQEEEKPAQDQAKVLILTTAMCKEVASLSEKFTNALTTVGSNRKAEVLNPMINSVLLEGCNSTAYIQDAFQLLLPILQVSHIQTSCSKAQP", "length": 560, "header": "tr|A0A5G2QMA5-1|A0A5G2QMA5_PIG Isoform 1 of Family with sequence similarity 114 member A1 OS=Sus scrofa OX=9823 GN=FAM114A1 PE=1 SV=1 CANONICAL=A0A5G2QMA5-1" }, "isoforms": [ { "isoform_ac": "A0A287AFB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB8/entry", "sequence": { "sequence": "MHNRIYFKVVNFCFPPPERPAGSNQRSETASNRTSVRPWLQDIKMSDDGDDTLATGDKDEKTDVPVSDTLPSDAPVLCDSATISNELSPANPRRDVPGNAAAQGAETADTGLTEPPEDPGAMGPPLNEEETEEALAECVDSVSLEAEPGSEVPLKEQSNPAVDSSPRGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRMHSVNSGSSEAAQPDTENEIPQTADAAADQSPAESPPTSPSSGSRGVLSAITNAVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTAERTAHYGMLFDEYQGLSHLEALEILSNESEGKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEVQGIEEKGEEFASMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQTVVPVDVAEESEDKTKKEEKEENAEGPEEKKEERKTKTVEEVYMLSIESLAK", "length": 496, "header": "tr|A0A287AFB8-1|A0A287AFB8_PIG Computationally mapped isoform of Family with sequence similarity 114 member A1 OS=Sus scrofa OX=9823 GN=FAM114A1 PE=1 SV=2 CANONICAL=A0A5G2QMA5-1" }, "locus": { "chromosome": "8", "start_pos": 30260439, "end_pos": 30115227, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051161.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051161.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042531.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042531.2" } ] } }, { "isoform_ac": "A0A287B944-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B944/entry", "sequence": { "sequence": "MSDDGDDTLATGDKDEKTDVPVSDTLPSDAPVLCDSATISNELSPANPRRDVPGAMGPPLNEEETEEALAECVDSVSLEAEPGSEVPLKEQSNPAVDSSPRGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRMHSVNSGSSEAAQPDTENEIPQTADAAADQSPAESPPTSPSSGSRGVLSAITNAVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTAERTAHYGMLFDEYQGLSHLEALEILSNESEGKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEVQGIEEKGEEFASMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQTVVPVDVAEESEDKTKKEEKEENAEGPEEKKEERKTKTVEEVYMLSIESLAK", "length": 430, "header": "tr|A0A287B944-1|A0A287B944_PIG Computationally mapped isoform of Family with sequence similarity 114 member A1 OS=Sus scrofa OX=9823 GN=FAM114A1 PE=1 SV=2 CANONICAL=A0A5G2QMA5-1" }, "locus": { "chromosome": "8", "start_pos": 30260439, "end_pos": 30201636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048639.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048639.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053005.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053005.2" } ] } }, { "isoform_ac": "A0A5G2QMA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5/entry", "sequence": { "sequence": "MSDDGDDTLATGDKDEKTDVPVSDTLPSDAPVLCDSATISNELSPANPRRDVPGNAAAQGAETADTGLTEPPEDPGAMGPPLNEEETEEALAECVDSVSLEAEPGSEVPLKEQSNPAVDSSPRGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRMHSVNSGSSEAAQPDTENEIPQTADAAADQSPAESPPTSPSSGSRGVLSAITNAVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTAERTAHYGMLFDEYQGLSHLEALEILSNESEGKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEVQGIEEKGEEFASMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQTVVPVDVAEESEDKTKKEEKEENAEGPEEKKEERKTKTVEEVYMLSIESLAKTARCIEQLHKVAELILHGQEEEKPAQDQAKVLILTTAMCKEVASLSEKFTNALTTVGSNRKAEVLNPMINSVLLEGCNSTAYIQDAFQLLLPILQVSHIQTSCSKAQP", "length": 560, "header": "tr|A0A5G2QMA5-1|A0A5G2QMA5_PIG Isoform 1 of Family with sequence similarity 114 member A1 OS=Sus scrofa OX=9823 GN=FAM114A1 PE=1 SV=1 CANONICAL=A0A5G2QMA5-1" }, "locus": { "chromosome": "8", "start_pos": 30270069, "end_pos": 30201636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090662.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090662.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066012.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066012.1" } ] } }, { "isoform_ac": "F1S4J0-1", "url": "https://www.uniprot.org/uniprotkb/F1S4J0/entry", "sequence": { "sequence": "MSDDGDDTLATGDKDEKTDVPVSDTLPSDAPVLCDSATISNELSPANPRRDVPGNAAAQGAETADTGLTEPPEDPGAMGPPLNEEETEEALAECVDSVSLEAEPGSEVPLKEQSNPAVDSSPRGGGWAGWGSWGKSLLSSASATVGHGLTAVKEKAGATLRMHSVNSGSSEAAQPDTENEIPQSEWRIYLGFWPLGCATLCVQMDDRVHICKMDSKRVSSSLAADAAADQSPAESPPTSPSSGSRGVLSAITNAVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQLTAERTAHYGMLFDEYQGLSHLEALEILSNESEGKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENEENQEVQGIEEKGEEFASMLTELLFELHVAATPDKLNKAMKKAHDWVEEDQTVVPVDVAEESEDKTKKEEKEENAEGPEEKKEERKTKTVEVTA", "length": 482, "header": "tr|F1S4J0-1|F1S4J0_PIG Computationally mapped isoform of Family with sequence similarity 114 member A1 OS=Sus scrofa OX=9823 GN=FAM114A1 PE=1 SV=3 CANONICAL=A0A5G2QMA5-1" }, "locus": { "chromosome": "8", "start_pos": 30259556, "end_pos": 30201636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009611.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009611.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009363.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009363.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 560, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMA5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 310, "end_pos": 312 }, { "start_pos": 530, "end_pos": 532 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QME2-1", "uniprot_ac": "A0A5G2QME2", "uniprot_id": "A0A5G2QME2_PIG", "mass": { "chemical_mass": 31176.0, "monoisotopic_mass": 31176.0 }, "refseq": {}, "gene_names": [ { "name": "GFM1", "type": "recommended", "evidence": [ { "id": "A0A5G2QME2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ] }, { "name": "MLF1", "type": "synonym", "evidence": [ { "id": "A0A5G2QME2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ] } ], "protein_names": [ { "name": "Myeloid leukemia factor 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QME2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GFM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2", "locus": { "chromosome": "13", "start_pos": 98458525, "end_pos": 98411179, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025651", "url": "https://www.ensembl.org/id/ENSSSCG00000025651" } ] } } ], "crossref": [ { "id": "A0A5G2QME2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QME2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019376", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019376", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QME2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQX0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQX0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFGMLSSSFEDDPFFSDSFIAHRESMRQMMRNFSEPFGRDMFSISDGRRRARNHTGHEDEENSLTRTDVSPFQAMDRMMLNMRNSMQELQRNFGHLSMDPNGHSFSSSSVMTYSKVGDEPPKVFQASTQTRRAPGGIKETRRALRDSESGLEKMAVGHHLQDRAHVIKKSKNNKTGDEELNQEFINMNESDAHAFDDEWQNEILKYKPRWRNLENSRMRSVGHENSRSRELKRREKLLQSPAIEHGRRSSVFEDKLNIKGSPVKMNKK", "length": 268, "header": "tr|A0A5G2QME2-1|A0A5G2QME2_PIG Isoform 1 of Myeloid leukemia factor 1 OS=Sus scrofa OX=9823 GN=GFM1 PE=3 SV=1 CANONICAL=A0A5G2QME2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QME2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2/entry", "sequence": { "sequence": "MFGMLSSSFEDDPFFSDSFIAHRESMRQMMRNFSEPFGRDMFSISDGRRRARNHTGHEDEENSLTRTDVSPFQAMDRMMLNMRNSMQELQRNFGHLSMDPNGHSFSSSSVMTYSKVGDEPPKVFQASTQTRRAPGGIKETRRALRDSESGLEKMAVGHHLQDRAHVIKKSKNNKTGDEELNQEFINMNESDAHAFDDEWQNEILKYKPRWRNLENSRMRSVGHENSRSRELKRREKLLQSPAIEHGRRSSVFEDKLNIKGSPVKMNKK", "length": 268, "header": "tr|A0A5G2QME2-1|A0A5G2QME2_PIG Isoform 1 of Myeloid leukemia factor 1 OS=Sus scrofa OX=9823 GN=GFM1 PE=3 SV=1 CANONICAL=A0A5G2QME2-1" }, "locus": { "chromosome": "13", "start_pos": 98403831, "end_pos": 98357943, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075161.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075161.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066047.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066047.1" } ] } }, { "isoform_ac": "A0A5G2QQX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQX0/entry", "sequence": { "sequence": "MFGMLSSSFEDDPFFSDSFIAHRESMRQMMRNFSEPFGRDMFSISDGRRRARNHTGHEDEENSLTAMSSLLPFGSFGNMRTDVSPFQAMDRMMLNMRNSMQELQRNFGHLSMDPNGHSFSSSSVMTYSKVGDEPPKVFQASTQTRRAPGGIKETRRALRDSESGLEKMAVGHHLQDRAHVIKKSKNNKTGDEELNQEFINMNESDAHAFDDEWQNEILKYKPRWRNLENSRMRSVGHENSRSRELKRREKLLQSPAIEHGRRSSVFEDKLNIKGSPVKMNKK", "length": 282, "header": "tr|A0A5G2QQX0-1|A0A5G2QQX0_PIG Computationally mapped isoform of Myeloid leukemia factor 1 OS=Sus scrofa OX=9823 GN=GFM1 PE=3 SV=1 CANONICAL=A0A5G2QME2-1" }, "locus": { "chromosome": "13", "start_pos": 98403831, "end_pos": 98357943, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090454.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090454.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067312.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067312.1" } ] } }, { "isoform_ac": "A0A5G2QV93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV93/entry", "sequence": { "sequence": "MFGMLSSSFEDDPFFSDSFIAHRESMRQMMRNFSEPFGRDMFSISDGRRRARNHTGHEDEENSLTRTDVSPFQAMDRMMLNMRNSMQELQRNFIKETRRALRDSESGLEKMAVGHHLQDRAHVIKKSKNNKTGDEELNQEFINMNESDAHAFDDEWQNEILKYKPRWRNLENSRMRSVGHENSRSRELKRREKLLQSPAIEHGRRSSVFEDKLNIKGSPVKMNKK", "length": 225, "header": "tr|A0A5G2QV93-1|A0A5G2QV93_PIG Computationally mapped isoform of Myeloid leukemia factor 1 OS=Sus scrofa OX=9823 GN=GFM1 PE=3 SV=2 CANONICAL=A0A5G2QME2-1" }, "locus": { "chromosome": "13", "start_pos": 98403831, "end_pos": 98357943, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082396.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082396.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068891.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068891.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "ciliary base", "id": "GO:0097546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097546", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "myeloid progenitor cell differentiation", "id": "GO:0002318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002318", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QME2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 268, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QME2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QME2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMF2-1", "uniprot_ac": "A0A5G2QMF2", "uniprot_id": "A0A5G2QMF2_PIG", "mass": { "chemical_mass": 33939.0, "monoisotopic_mass": 33939.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QMF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMF2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMF2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021535", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021535", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NELKPQDGTKQLLGFLSESPKDPEQLQKLFIGGLSFETTDESLRSHCEQWGMLRLCGKEGPKHQAPQRLRVCHVCHCGGGGCSHECKLHKLDGRVVEPKRVFSREDSQRPGAHLTVEKIFVGGIKEDTQEHHLREYFEEYGKIERGFAFVTFDDHDSADKTVVQKYHTMTGQNCEVRRALSKQKMASASSSQRGQSGSGNFGGGQGGGFGGNDNFGRGGNFSGPGGFGGSRGGGYGGSGDGYNGFGNDRSNSGGGRSYNDFGNYNNQSSNLGPMKGGHFGGRSSGRSGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRF", "length": 318, "header": "tr|A0A5G2QMF2-1|A0A5G2QMF2_PIG Isoform 1 of RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMF2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2/entry", "sequence": { "sequence": "NELKPQDGTKQLLGFLSESPKDPEQLQKLFIGGLSFETTDESLRSHCEQWGMLRLCGKEGPKHQAPQRLRVCHVCHCGGGGCSHECKLHKLDGRVVEPKRVFSREDSQRPGAHLTVEKIFVGGIKEDTQEHHLREYFEEYGKIERGFAFVTFDDHDSADKTVVQKYHTMTGQNCEVRRALSKQKMASASSSQRGQSGSGNFGGGQGGGFGGNDNFGRGGNFSGPGGFGGSRGGGYGGSGDGYNGFGNDRSNSGGGRSYNDFGNYNNQSSNLGPMKGGHFGGRSSGRSGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRF", "length": 318, "header": "tr|A0A5G2QMF2-1|A0A5G2QMF2_PIG Isoform 1 of RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMF2-1" }, "locus": { "chromosome": "13", "start_pos": 182162582, "end_pos": 182160755, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022485.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022485.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066057.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066057.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMF2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMF2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMF2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 183, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 220, "end_pos": 222 }, { "start_pos": 266, "end_pos": 268 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMF6-1", "uniprot_ac": "A0A5G2QMF6", "uniprot_id": "A0A5G2QMF6_PIG", "mass": { "chemical_mass": 19329.0, "monoisotopic_mass": 19329.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMF6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046961", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046961", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF97", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF97", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDQLNVTKSNSLQLNNLTAADPRSYVAQIATTSLVPQVRVDSLPCEHNTCNITLRCSVEEGGESIIYEWTPMGLRAILSQEGSVLRDSWNTCDLNWTYTCTAMNPVGNSTLSLNLWELCAKEHSAKPFIYILHTLHQFLLLSLTPCRPASVSLITVFNNYFMLYVYSVWF", "length": 171, "header": "tr|A0A5G2QMF6-1|A0A5G2QMF6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMF6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6/entry", "sequence": { "sequence": "MKDQLNVTKSNSLQLNNLTAADPRSYVAQIATTSLVPQVRVDSLPCEHNTCNITLRCSVEEGGESIIYEWTPMGLRAILSQEGSVLRDSWNTCDLNWTYTCTAMNPVGNSTLSLNLWELCAKEHSAKPFIYILHTLHQFLLLSLTPCRPASVSLITVFNNYFMLYVYSVWF", "length": 171, "header": "tr|A0A5G2QMF6-1|A0A5G2QMF6_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMF6-1" }, "locus": { "chromosome": "4", "start_pos": 88072395, "end_pos": 88071033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089725.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089725.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063292.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063292.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" } ], "pmid": "" }, { "name": "T cell activation", "id": "GO:0042110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042110", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMF6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 171, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMF6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMF6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 113, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 17, "end_pos": 19 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 6, "end_pos": 8 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMH9-1", "uniprot_ac": "A0A5G2QMH9", "uniprot_id": "A0A5G2QMH9_PIG", "mass": { "chemical_mass": 25269.0, "monoisotopic_mass": 25269.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QMH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMH9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMH9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042960", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042960", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QMH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWVRRINAEAITQSNFQHLLHEDLEAVDLLVGGHHPEPLEVLLGVLLLRQALHIGHPVQSQVVGVLQVAGDRGEVAVGAVEKLGAKELEEEAGGAEDVGVEDLHARRGEAVDLGGLPHGEVDRLHTLVQRDVEHGVLLGLGQLHLLLLQGLNQRLHLVEVGLPAEQAHLLEVLRQVQVGGPQEVEDVAEHLAVAVNEAVALAVPLGGHLPTEHGTQHGIREAGQGRQGGCIELTPNV", "length": 237, "header": "tr|A0A5G2QMH9-1|A0A5G2QMH9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMH9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9/entry", "sequence": { "sequence": "MWVRRINAEAITQSNFQHLLHEDLEAVDLLVGGHHPEPLEVLLGVLLLRQALHIGHPVQSQVVGVLQVAGDRGEVAVGAVEKLGAKELEEEAGGAEDVGVEDLHARRGEAVDLGGLPHGEVDRLHTLVQRDVEHGVLLGLGQLHLLLLQGLNQRLHLVEVGLPAEQAHLLEVLRQVQVGGPQEVEDVAEHLAVAVNEAVALAVPLGGHLPTEHGTQHGIREAGQGRQGGCIELTPNV", "length": 237, "header": "tr|A0A5G2QMH9-1|A0A5G2QMH9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMH9-1" }, "locus": { "chromosome": "9", "start_pos": 12573579, "end_pos": 12572869, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078003.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078003.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063317.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063317.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMH9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMH9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 237, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMH9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMH9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QML2-1", "uniprot_ac": "A0A5G2QML2", "uniprot_id": "A0A5G2QML2_PIG", "mass": { "chemical_mass": 31263.0, "monoisotopic_mass": 31263.0 }, "refseq": {}, "gene_names": [ { "name": "RGS20", "type": "recommended", "evidence": [ { "id": "A0A5G2QML2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ] } ], "protein_names": [ { "name": "Regulator of G protein signaling 20", "type": "synonym", "evidence": [ { "id": "A0A5G2QML2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGS20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QML2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QML2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006262", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006262", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156509", "url": "https://www.ncbi.nlm.nih.gov/gene/100156509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156509", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMGSEWM", "url": "https://omabrowser.org/oma/group/PMGSEWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMS8", "url": "https://www.orthodb.org/?gene=A0A5G2QMS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845:SF277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845:SF277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418597", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QML2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSG7", "url": "https://www.uniprot.org/uniprotkb/F1RSG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RSG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRLSQDNQECLQKHSSRPSMWMHSLPPPGAAEHHTSLHQMVKNEGGTTAMHDVKPMGSERMEMRKRQMAASAKPSSPGPGQPRGGSRGSNACCFCWCCCCSCSCFTVRSQEEQRLRPASYELRRADLPTCEESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKEANKTIIEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMHRDSYPRFLSSTLYKDLLRALSERSVEA", "length": 274, "header": "tr|A0A5G2QML2-1|A0A5G2QML2_PIG Isoform 1 of Regulator of G protein signaling 20 OS=Sus scrofa OX=9823 GN=RGS20 PE=1 SV=1 CANONICAL=A0A5G2QML2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QML2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2/entry", "sequence": { "sequence": "MPRLSQDNQECLQKHSSRPSMWMHSLPPPGAAEHHTSLHQMVKNEGGTTAMHDVKPMGSERMEMRKRQMAASAKPSSPGPGQPRGGSRGSNACCFCWCCCCSCSCFTVRSQEEQRLRPASYELRRADLPTCEESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKEANKTIIEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMHRDSYPRFLSSTLYKDLLRALSERSVEA", "length": 274, "header": "tr|A0A5G2QML2-1|A0A5G2QML2_PIG Isoform 1 of Regulator of G protein signaling 20 OS=Sus scrofa OX=9823 GN=RGS20 PE=1 SV=1 CANONICAL=A0A5G2QML2-1" }, "locus": { "chromosome": "4", "start_pos": 77209334, "end_pos": 77144043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069309.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069309.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065278.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065278.1" } ] } }, { "isoform_ac": "A0A5G2QMS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS8/entry", "sequence": { "sequence": "MRTANGGEPAAASLRIRGADGRTPMGSERMEMRKRQMAASAKPSSPGPGQPRGGSRGSNACCFCWCCCCSCSCFTVRSQEEQRLRPASYELRRADLPTCEESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKEANKTIIEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMHRDSYPRFLSSTLYKDLLRALSERSVEA", "length": 242, "header": "tr|A0A5G2QMS8-1|A0A5G2QMS8_PIG Computationally mapped isoform of Regulator of G protein signaling 20 OS=Sus scrofa OX=9823 GN=RGS20 PE=1 SV=1 CANONICAL=A0A5G2QML2-1" }, "locus": { "chromosome": "4", "start_pos": 77184303, "end_pos": 77144043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089478.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089478.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065353.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065353.1" } ] } }, { "isoform_ac": "F1RSG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RSG7/entry", "sequence": { "sequence": "MPRLSQDNQECLQKHSSRPSMWMHSLPPPGAAEHHTSLHQMVKNEGGTTAMHDVKLADSPAVPKLLSILSGTLSGLARFFSHLLRRSPPEAPQRRPDFSLLLPALPVAGLARRPEERPGRLSLLLRVALALPGRPPGRRLPRDEEASAGQSSPVPPMGSERMEMRKRQMAASAKPSSPGPGQPRGGSRGSNACCFCWCCCCSCSCFTVRSQEEQRLRPASYELRRADLPTCEESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKEANKTIIEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMHRDSYPRFLSSTLYKDLLRALSERSVEA", "length": 374, "header": "tr|F1RSG7-1|F1RSG7_PIG Computationally mapped isoform of Regulator of G protein signaling 20 OS=Sus scrofa OX=9823 GN=RGS20 PE=1 SV=3 CANONICAL=A0A5G2QML2-1" }, "locus": { "chromosome": "4", "start_pos": 77209334, "end_pos": 77144043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006861.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006861.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006675.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006675.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156509", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156509", "resource": "KEGG Pathway" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-418597", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "resource": "Reactome", "description": "G alpha (z) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AB40EAI1-1", "protein_name": "Regulator of G-protein signaling 20", "gene_name": "rgs20", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSCNRLILKWVVWPSSVVPSVRRPPYLMWGQLRHLLQACRHDEGYFANGSYENEDENENTEDGSKDPISFQPMGSERMEMRKRQMSVQQESVAGTTAPAQNEQPGQGNRASNACCFCWCCCCSCSCLTVRNEDRDERNRRASYDFKADGDADFEESPKPTAEEICLWGQSFDKLMNCPSGRSAFRQFLRTEFSEENMLFWLACEEFRKEANKSVIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMLEPTSHTFDDAQLQIYTLMQRDSYPRFMNSPVYKNLLKTVSETQSVES", "length": 297 }, "evidence": [ { "id": "A0A5G2QML2", "url": "https://omabrowser.org/oma/group/A0A5G2QML2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ABK0L7Z3-1", "protein_name": "Regulator of G-protein signaling 20", "gene_name": "Rgs20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPSLPQGNQGYLEEHLSGQAEQAQLLPLIRAEKDSNSSIPQDPENKGVSQAVTGVKPVESEQTEMRMRQMCSGSETQGSVPSQQQGVGGRGSNACCFCWCCCCSCSCLTVRNQEDQRPQRAAHELRTDIPACEESPMPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDLLKSLAEKAVEA", "length": 275 }, "evidence": [ { "id": "A0A5G2QML2", "url": "https://omabrowser.org/oma/group/A0A5G2QML2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O76081-1", "protein_name": "Regulator of G protein signaling 20", "gene_name": "RGS20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPQLSQDNQECLQKHFSRPSIWTQFLPLFRAQRYNTDIHQITENEGDLRAVPDIKSFPPAQLPDSPAAPKLFGLLSSPLSSLARFFSHLLRRPPPEAPRRRLDFSPLLPALPAARLSRGHEELPGRLSLLLGAALALPGRPSGGRPLRPPHPVAKPREEDATAGQSSPMPQMGSERMEMRKRQMPAAQDTPGAAPGQPGAGSRGSNACCFCWCCCCSCSCLTVRNQEDQRPTIASHELRADLPTWEESPAPTLEEVNAWAQSFDKLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTLMHRDSYPRFMNSAVYKDLLQSLSEKSIEA", "length": 388 }, "evidence": [ { "id": "A0A5G2QML2", "url": "https://omabrowser.org/oma/group/A0A5G2QML2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P79348-1", "protein_name": "Regulator of G protein signaling 20", "gene_name": "RGS20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPRLSQDNQQGHQKHFSRPSRRIQFLPPPWTEAYNVNVHQTVENEGCATAMHNVKLLGSPAAPTLLSLLSGTLSGFARFFALLLRRPPPEAPLRRRDFSALIPALPAAVLSPGHEERPGRLSLLLRAALALPGRPPGGRLPREVDASAGQSSSIPPMGSEWMEMRKRPVCAAQEPTACAPGQPGVENQGSNACCFCWCCCCSCSCLTVRNQEEQRLRRTSYEARTEDLPTCEESPGPTLEEASAWAQSFDKLMLTPAGRNAFREFLRTEFSEENMLFWMACEELKKEANKATIEEKARIIYEDYISILSPKEVSLDSRVRETINRSMAEPSRNIFDDAQLQIYTLMHRDSYPRFMNSALYKDLLRSLSEKAVEA", "length": 374 }, "evidence": [ { "id": "A0A5G2QML2", "url": "https://omabrowser.org/oma/group/A0A5G2QML2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9QZB1-1", "protein_name": "Regulator of G protein signaling 20", "gene_name": "Rgs20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRTANGGPRARASPSASPADPGLPEGSERTEMRMRQMCGGSETQGPAPSQQGGRGSNACCFCWCCCCTCSCLTVRNQEDQRPQRASHEIRTDIPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDLLTSLAEKTVEA", "length": 239 }, "evidence": [ { "id": "A0A5G2QML2", "url": "https://omabrowser.org/oma/group/A0A5G2QML2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of signal transduction", "id": "GO:0009968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009968", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "pmid": "" }, { "name": "negative regulation of G protein-coupled receptor signaling pathway", "id": "GO:0045744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045744", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic side of plasma membrane", "id": "GO:0009898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009898", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QML2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QML2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 274, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QML2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QML2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QML2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QML2" }, { "id": "PS50132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RGS", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 264, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMN6-1", "uniprot_ac": "A0A5G2QMN6", "uniprot_id": "A0A5G2QMN6_PIG", "mass": { "chemical_mass": 17198.0, "monoisotopic_mass": 17198.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QMN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042482", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042482", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QMN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMWVHVSFLRKVLSRYMPKNGIAGSYGSSMYSTLRYLHTVLHSGCTSSHSHQQCRRVPFSPHLLQHLLFVDLLMMAILTGVRWYLVVVLICISLIIRDVEHFFMCLLAICISSLEKCLFRSFTHFSIGLLAFLLLSCISCLYILAIKPL", "length": 150, "header": "tr|A0A5G2QMN6-1|A0A5G2QMN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMN6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6/entry", "sequence": { "sequence": "MNMWVHVSFLRKVLSRYMPKNGIAGSYGSSMYSTLRYLHTVLHSGCTSSHSHQQCRRVPFSPHLLQHLLFVDLLMMAILTGVRWYLVVVLICISLIIRDVEHFFMCLLAICISSLEKCLFRSFTHFSIGLLAFLLLSCISCLYILAIKPL", "length": 150, "header": "tr|A0A5G2QMN6-1|A0A5G2QMN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMN6-1" }, "locus": { "chromosome": "13", "start_pos": 142231514, "end_pos": 142231065, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086860.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086860.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065303.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065303.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMN6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 150, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMN6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMN6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMQ1-1", "uniprot_ac": "A0A5G2QMQ1", "uniprot_id": "A0A5G2QMQ1_PIG", "mass": { "chemical_mass": 18522.0, "monoisotopic_mass": 18522.0 }, "refseq": {}, "gene_names": [ { "name": "VMAC", "type": "recommended", "evidence": [ { "id": "A0A5G2QMQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1" } ] } ], "protein_names": [ { "name": "Vimentin type intermediate filament associated coiled-coil protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QMQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VMAC", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1", "locus": { "chromosome": "2", "start_pos": 73126071, "end_pos": 73130027, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031764", "url": "https://www.ensembl.org/id/ENSSSCG00000031764" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013532", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013532", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ERTVHGQ", "url": "https://omabrowser.org/oma/group/ERTVHGQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAPPPLQIREANAHLAAVHRRAAELEARLDAAERTVRAQAERLARHDQQLRAALDELGRAKDREIATLQEQLLTSEAAVQSLQAAVRQRDELIRQLLPRAELLQDICRRRPLLAGLLATLVEAERLGPLPASDPSHVLPGGPSSPLANSTGEEEDRDHRQPALFGTTV", "length": 169, "header": "tr|A0A5G2QMQ1-1|A0A5G2QMQ1_PIG Isoform 1 of Vimentin type intermediate filament associated coiled-coil protein OS=Sus scrofa OX=9823 GN=VMAC PE=4 SV=2 CANONICAL=A0A5G2QMQ1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1/entry", "sequence": { "sequence": "MSAPPPLQIREANAHLAAVHRRAAELEARLDAAERTVRAQAERLARHDQQLRAALDELGRAKDREIATLQEQLLTSEAAVQSLQAAVRQRDELIRQLLPRAELLQDICRRRPLLAGLLATLVEAERLGPLPASDPSHVLPGGPSSPLANSTGEEEDRDHRQPALFGTTV", "length": 169, "header": "tr|A0A5G2QMQ1-1|A0A5G2QMQ1_PIG Isoform 1 of Vimentin type intermediate filament associated coiled-coil protein OS=Sus scrofa OX=9823 GN=VMAC PE=4 SV=2 CANONICAL=A0A5G2QMQ1-1" }, "locus": { "chromosome": "2", "start_pos": 73129986, "end_pos": 73128204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082603.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082603.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065934.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065934.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMQ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8QC89-1", "protein_name": "Vimentin-type intermediate filament-associated coiled-coil protein", "gene_name": "vmac", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSPSPVQIREANAHLAALHRRVSELEQRLREAERTVREQAESLIRKDEQLRAATQEITEAKDKEIFFLHEKLCQSEESIHKLNQTIKEKDSLIGQLQHRCQLLDNICKSRPLLDSMLAQMAEAERMGPVSDLGKPTTNSSLTDGESNCSPSRLSNHKDFSLSEDDSDDQELDGVVFGTTV", "length": 181 }, "evidence": [ { "id": "A0A5G2QMQ1", "url": "https://omabrowser.org/oma/group/A0A5G2QMQ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A7YWC8-1", "protein_name": "Vimentin-type intermediate filament-associated coiled-coil protein", "gene_name": "VMAC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAPPPLQIREANAHLAAVHRRAAELEARLEAAECMVRAQAERLARHDQQLSAALDELGRAKDREIAALREQLLTSEAAVQSLQAAVRQRDKLIGQLQPRAELLQDLCRRRPPLAGLLATLAEAERLGPLPASDLLPGGPSSPLANSTGEEEGSDQLEPAVFGTTV", "length": 166 }, "evidence": [ { "id": "A0A5G2QMQ1", "url": "https://omabrowser.org/oma/group/A0A5G2QMQ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q2NL98-1", "protein_name": "Vimentin-type intermediate filament-associated coiled-coil protein", "gene_name": "VMAC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAPPALQIREANAHLAAVHRRAAELEARLDAAERTVHAQAERLALHDQQLRAALDELGRAKDREIATLQEQLMTSEATVHSLQATVHQRDELIRQLQPRAELLQDICRRRPPLAGLLDALAEAERLGPLPASDPGHPPPGGPGPPLDNSTGEEADRDHLQPAVFGTTV", "length": 169 }, "evidence": [ { "id": "A0A5G2QMQ1", "url": "https://omabrowser.org/oma/group/A0A5G2QMQ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BP01-1", "protein_name": "Vimentin-type intermediate filament-associated coiled-coil protein", "gene_name": "Vmac", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAPPPLQIREANAHLAAVHRRAAELERRLLAAERTIGAQAERLACHDQHLRAALDELGRAKDREISALQEQLLSSEATVRSLQAAVDQRDQMIQQLQPRADLLQDITRHRPPLAALLATLEEAEELGPLPASHSHRAQLLPDGPGPPLGNNMGKEEGQDDQDDQQPAVFGTTV", "length": 174 }, "evidence": [ { "id": "A0A5G2QMQ1", "url": "https://omabrowser.org/oma/group/A0A5G2QMQ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMR1-1", "uniprot_ac": "A0A5G2QMR1", "uniprot_id": "A0A5G2QMR1_PIG", "mass": { "chemical_mass": 34933.0, "monoisotopic_mass": 34933.0 }, "refseq": { "ac": "XP_020928444", "name": "transport and Golgi organization protein 2 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928444" }, "gene_names": [ { "name": "TANGO2", "type": "recommended", "evidence": [ { "id": "A0A5G2QMR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ] }, { "name": "TANGO2", "type": "synonym", "evidence": [ { "id": "XP_020928444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928444" } ] } ], "protein_names": [ { "name": "Transport and golgi organization 2 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QMR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1/entry#names_and_taxonomy" } ] }, { "name": "transport and Golgi organization protein 2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020928444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928444" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TANGO2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1", "locus": { "chromosome": "14", "start_pos": 51464367, "end_pos": 51443638, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010134", "url": "https://www.ensembl.org/id/ENSSSCG00000010134" } ] } } ], "crossref": [ { "id": "A0A5G2QMR1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010134", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010134", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154308", "url": "https://www.ncbi.nlm.nih.gov/gene/100154308", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMR1", "url": "https://www.orthodb.org/?gene=A0A5G2QMR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17985:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17985:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928444", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928444", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UM16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UM16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UM16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UM16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UP57", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UP57-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URD1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7J9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAA2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHN1", "url": "https://www.uniprot.org/uniprotkb/F1RHN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHN1-1", "url": "https://www.uniprot.org/uniprotkb/F1RHN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTASVPVLDPNVGRGLECFLREPLLSSQPDTHPGARMCGMGPGAQGTAPVGIGCHPGPRATSPCGGPAPVPQQGCRLRVCSQDHRAGQVVMASCALGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 324, "header": "tr|A0A5G2QMR1-1|A0A5G2QMR1_PIG Isoform 1 of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UM16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UM16/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 214, "header": "tr|A0A4X1UM16-1|A0A4X1UM16_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463697, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078549.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078549.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063866.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063866.1" } ] } }, { "isoform_ac": "A0A4X1UP57-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP57/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLRQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 201, "header": "tr|A0A4X1UP57-1|A0A4X1UP57_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463697, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077255.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077255.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062143.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062143.1" } ] } }, { "isoform_ac": "A0A4X1URD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URD1/entry", "sequence": { "sequence": "VAGHQHSGEAGCAHQLPAAEAGPRCTGPSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 178, "header": "tr|A0A4X1URD1-1|A0A4X1URD1_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463697, "end_pos": 51456927, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083829.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083829.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065063.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065063.1" } ] } }, { "isoform_ac": "A0A5G2QMR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1/entry", "sequence": { "sequence": "MTASVPVLDPNVGRGLECFLREPLLSSQPDTHPGARMCGMGPGAQGTAPVGIGCHPGPRATSPCGGPAPVPQQGCRLRVCSQDHRAGQVVMASCALGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 324, "header": "tr|A0A5G2QMR1-1|A0A5G2QMR1_PIG Isoform 1 of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463697, "end_pos": 51456604, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082529.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082529.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066167.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066167.1" } ] } }, { "isoform_ac": "A0A5G2QMW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW4/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRCEKDCPATHTACDLASRPPARFTLMPGEMTVPQPGLGQPRCTVPPLTTHRGTCVYPSNQICFLASAS", "length": 304, "header": "tr|A0A5G2QMW4-1|A0A5G2QMW4_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=2 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463969, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090841.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090841.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065388.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065388.2" } ] } }, { "isoform_ac": "A0A5G2R7J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7J9/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGPATHTACDLASRPPARFTLMPGEMTVPQPGLGQPRCTVPPLTTHRGTCVYPSNQICFLASAS", "length": 310, "header": "tr|A0A5G2R7J9-1|A0A5G2R7J9_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463969, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067953.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067953.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070107.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070107.1" } ] } }, { "isoform_ac": "A0A8W4FAA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA2/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGSCRTRLLRTRAGSMCSPSSASMQPCVCAARTTAPGVKRTAFPAPLEPLPSPGSCRSTRR", "length": 148, "header": "tr|A0A8W4FAA2-1|A0A8W4FAA2_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=1 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51462110, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104996.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104996.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076206.1" } ] } }, { "isoform_ac": "F1RHN1-1", "url": "https://www.uniprot.org/uniprotkb/F1RHN1/entry", "sequence": { "sequence": "MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPSKAADFWGSNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLDPDARGRGEAPSCCPGHGFVSAATGELVSHFLTTDMDSLSYLKKVSKEGHLYNGFNLIAADLSTEKGDIICYYGNRGNDKPVVLEPGTYGLSNALLDTPWKKLCFGKQLFLEAVGRSQALPKDALVAQLLDMLNNEEAQLPDPAIEDQGREYVQPFLSKYAAVCVRCSDYGTRTNTVILVDADGHVTFTERSMLGTDPSHWETTTHEFKLQS", "length": 293, "header": "tr|F1RHN1-1|F1RHN1_PIG Computationally mapped isoform of Transport and golgi organization 2 homolog OS=Sus scrofa OX=9823 GN=TANGO2 PE=1 SV=3 CANONICAL=A0A5G2QMR1-1" }, "locus": { "chromosome": "14", "start_pos": 51463697, "end_pos": 51452405, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011095.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011095.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010807.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010807.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein secretion", "id": "GO:0009306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009306", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMR1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 324, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMR1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMR1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMS3-1", "uniprot_ac": "A0A5G2QMS3", "uniprot_id": "A0A5G2QMS3_PIG", "mass": { "chemical_mass": 10803.0, "monoisotopic_mass": 10803.0 }, "refseq": { "ac": "XP_020956774", "name": "small integral membrane protein 14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956774" }, "gene_names": [ { "name": "SMIM14", "type": "recommended", "evidence": [ { "id": "A0A5G2QMS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3" } ] }, { "name": "SMIM14", "type": "synonym", "evidence": [ { "id": "XP_020956774", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956774" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 14", "type": "recommended", "evidence": [ { "id": "A0A5G2QMS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 14", "type": "synonym", "evidence": [ { "id": "XP_020956774", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956774" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMS3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021793", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021793", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627474", "url": "https://www.ncbi.nlm.nih.gov/gene/100627474", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627474", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627474", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ACTDTEC", "url": "https://omabrowser.org/oma/group/ACTDTEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMS3", "url": "https://www.orthodb.org/?gene=A0A5G2QMS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31019", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31019:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31019:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956774", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956774", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 99, "header": "tr|A0A5G2QMS3-1|A0A5G2QMS3_PIG Isoform 1 of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3/entry", "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 99, "header": "tr|A0A5G2QMS3-1|A0A5G2QMS3_PIG Isoform 1 of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30809027, "end_pos": 30768544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069038.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069038.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063418.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063418.1" } ] } }, { "isoform_ac": "A0A5G2QPM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPM1/entry", "sequence": { "sequence": "MPQARMEKEKKKKKNWLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 90, "header": "tr|A0A5G2QPM1-1|A0A5G2QPM1_PIG Computationally mapped isoform of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30794892, "end_pos": 30768544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076898.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076898.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066011.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066011.1" } ] } }, { "isoform_ac": "A0A5G2QZB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB0/entry", "sequence": { "sequence": "RGGEEAGGQEQRQQRRPEQPQRSGSSRRSFCRGLVPAPILPAPSVVVWAVPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 107, "header": "tr|A0A5G2QZB0-1|A0A5G2QZB0_PIG Computationally mapped isoform of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30840306, "end_pos": 30768544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070226.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070226.1" } ] } }, { "isoform_ac": "A0A5G2QZK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK2/entry", "sequence": { "sequence": "PREPADPGLVAKSDVVNRIKTEEGRKPAVRSSGSSGGPSSRSVPEAPGGLSAEAWSRPPSSPPRRLLSGRLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 144, "header": "tr|A0A5G2QZK2-1|A0A5G2QZK2_PIG Computationally mapped isoform of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=2 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30840368, "end_pos": 30768544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090984.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090984.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069563.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069563.2" } ] } }, { "isoform_ac": "A0A5G2RCV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCV7/entry", "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQEWTRPTSPSCGLTL", "length": 54, "header": "tr|A0A5G2RCV7-1|A0A5G2RCV7_PIG Computationally mapped isoform of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30809027, "end_pos": 30768536, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082111.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082111.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072122.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072122.1" } ] } }, { "isoform_ac": "A0A5G2RCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCY3/entry", "sequence": { "sequence": "SDSLTTAPQQELPHLTFLLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPTSPHNGQDPPAPPVD", "length": 92, "header": "tr|A0A5G2RCY3-1|A0A5G2RCY3_PIG Computationally mapped isoform of Small integral membrane protein 14 OS=Sus scrofa OX=9823 GN=SMIM14 PE=4 SV=1 CANONICAL=A0A5G2QMS3-1" }, "locus": { "chromosome": "8", "start_pos": 30785369, "end_pos": 30768544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088871.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088871.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074306.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074306.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627474", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627474", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YVD2-1", "protein_name": "Small integral membrane protein 14", "gene_name": "SMIM14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLAISAASAHSPPPPSRAQRAPPPPLPLDNSRPHQNGGGCRACAVFTEKFRFIQGTMAEGGFDPCECICSHEHAMRRLINLLRQSQSYCTDTECLQELPGPNYSGDNVVSFAMVVMAWVVIAFVLFLLRPSNLRNSSAAGKPTSPHNGQEPPAPPLD", "length": 157 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IBF9-1", "protein_name": "Small integral membrane protein 14", "gene_name": "Smim14", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEGGFDPCECICSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSSDSGVSITVILMAWMVIAVLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD", "length": 99 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0E8W6-1", "protein_name": "Small integral membrane protein 14", "gene_name": "BcDNA:AT28250", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDDFDGCECVWSQEYAMQRLINFIRQNQNACGDNECYDVTGRTPHQAQIAGRGDDSGFSVAMIFLIVAMFMYIVNPSTWGNFTSNKRAGGRRDNNQDGSPPQPPPPAIN", "length": 110 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2KIK3-1", "protein_name": "Small integral membrane protein 14", "gene_name": "SMIM14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSSDNGISITMILMAWMVIAVILFLLRPPNLRGSNLTGKPASPHNGQDPPAPPVD", "length": 99 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q498C7-1", "protein_name": "Small integral membrane protein 14", "gene_name": "Smim14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEGGFDPCECICSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSGDSGISITVILMAWMVIAVLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD", "length": 99 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91VT8-1", "protein_name": "Small integral membrane protein 14", "gene_name": "Smim14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLRELPGPSSDSGISITVILMAWMVIAMLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD", "length": 99 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96QK8-1", "protein_name": "Small integral membrane protein 14", "gene_name": "SMIM14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSGDNGISVTMILVAWMVIALILFLLRPPNLRGSSLPGKPTSPHNGQDPPAPPVD", "length": 99 }, "evidence": [ { "id": "A0A5G2QMS3", "url": "https://omabrowser.org/oma/group/A0A5G2QMS3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMS3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 99, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMS3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMS3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMS4-1", "uniprot_ac": "A0A5G2QMS4", "uniprot_id": "A0A5G2QMS4_PIG", "mass": { "chemical_mass": 27860.0, "monoisotopic_mass": 27860.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QMS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMS4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMS4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKYKEEPRKTRTFICRDANYLGAVKTRMNNAEERISDMEDRIMEITQSGQQTENQIKKLESNIRDLWDNIKRANLCIIRIPEGVEKDKGMENIFEEIIAGNVPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQPRREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNKKHRLKEILKGLL", "length": 237, "header": "tr|A0A5G2QMS4-1|A0A5G2QMS4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QMS4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4/entry", "sequence": { "sequence": "MRKYKEEPRKTRTFICRDANYLGAVKTRMNNAEERISDMEDRIMEITQSGQQTENQIKKLESNIRDLWDNIKRANLCIIRIPEGVEKDKGMENIFEEIIAGNVPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQPRREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNKKHRLKEILKGLL", "length": 237, "header": "tr|A0A5G2QMS4-1|A0A5G2QMS4_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QMS4-1" }, "locus": { "chromosome": "AEMK02000253.1", "start_pos": 101152, "end_pos": 100442, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068290.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068290.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065348.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065348.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMS4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 237, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMS4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMS4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 168, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QMS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS4" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 234, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMT4-1", "uniprot_ac": "A0A5G2QMT4", "uniprot_id": "A0A5G2QMT4_PIG", "mass": { "chemical_mass": 99480.0, "monoisotopic_mass": 99480.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QMT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QMT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMT4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046526", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046526", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QMT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSNPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIE", "length": 851, "header": "tr|A0A5G2QMT4-1|A0A5G2QMT4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMT4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSNPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIE", "length": 851, "header": "tr|A0A5G2QMT4-1|A0A5G2QMT4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QMT4-1" }, "locus": { "chromosome": "X", "start_pos": 28426021, "end_pos": 28423469, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072558.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072558.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059626.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059626.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 851, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT4" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 621, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 316, "end_pos": 318 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMT8-1", "uniprot_ac": "A0A5G2QMT8", "uniprot_id": "A0A5G2QMT8_PIG", "mass": { "chemical_mass": 61978.0, "monoisotopic_mass": 61978.0 }, "refseq": { "ac": "XP_005652666", "name": "intermediate filament family orphan 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652666" }, "gene_names": [ { "name": "IFFO1", "type": "recommended", "evidence": [ { "id": "A0A5G2QMT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8" } ] }, { "name": "IFFO1", "type": "synonym", "evidence": [ { "id": "XP_005652666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652666" } ] } ], "protein_names": [ { "name": "Intermediate filament family orphan 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QMT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8/entry#names_and_taxonomy" } ] }, { "name": "intermediate filament family orphan 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_005652666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652666" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IFFO1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8", "locus": { "chromosome": "5", "start_pos": 64129274, "end_pos": 64116150, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000695", "url": "https://www.ensembl.org/id/ENSSSCG00000000695" } ] } } ], "crossref": [ { "id": "A0A5G2QMT8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMT8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000695", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000695", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515778", "url": "https://www.ncbi.nlm.nih.gov/gene/100515778", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CETQVNS", "url": "https://omabrowser.org/oma/group/CETQVNS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMT8", "url": "https://www.orthodb.org/?gene=A0A5G2QMT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14516", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14516", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14516:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14516:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005652666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QMT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLR7", "url": "https://www.uniprot.org/uniprotkb/F1SLR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHLAGGGDLPPAPLAPAGPAPYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPVRPLGLPLGSRPAAVCTPSARVLGSPARSPAGPLAPSAACHPAPSTSASTAYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYAVRLQLQERVDELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIKMFQVPSMGGRKRERKAAVEEDTSLSESDGPRHPDGDEEESAALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYALAAAEAPGEQPEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR", "length": 560, "header": "tr|A0A5G2QMT8-1|A0A5G2QMT8_PIG Isoform 1 of Intermediate filament family orphan 1 OS=Sus scrofa OX=9823 GN=IFFO1 PE=4 SV=2 CANONICAL=A0A5G2QMT8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHLAGGGDLPPAPLAPAGPAPYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPVRPLGLPLGSRPAAVCTPSARVLGSPARSPAGPLAPSAACHPAPSTSASTAYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYAVRLQLQERVDELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIKMFQVPSMGGRKRERKAAVEEDTSLSESDGPRHPDGDEEESAALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYALAAAEAPGEQPEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR", "length": 560, "header": "tr|A0A5G2QMT8-1|A0A5G2QMT8_PIG Isoform 1 of Intermediate filament family orphan 1 OS=Sus scrofa OX=9823 GN=IFFO1 PE=4 SV=2 CANONICAL=A0A5G2QMT8-1" }, "locus": { "chromosome": "5", "start_pos": 64128191, "end_pos": 64116167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068449.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068449.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066197.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066197.2" } ] } }, { "isoform_ac": "A0A5G2QSA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSA6/entry", "sequence": { "sequence": "MKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIKMFQKKLVPSMGGRKRERKAAVEEDTSLSESDGPRHPDGDEEESAALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYALAAAEAPGEPEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR", "length": 271, "header": "tr|A0A5G2QSA6-1|A0A5G2QSA6_PIG Computationally mapped isoform of Intermediate filament family orphan 1 OS=Sus scrofa OX=9823 GN=IFFO1 PE=4 SV=2 CANONICAL=A0A5G2QMT8-1" }, "locus": { "chromosome": "5", "start_pos": 64128191, "end_pos": 64120782, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083719.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083719.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067810.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067810.2" } ] } }, { "isoform_ac": "F1SLR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR7/entry", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHLAGGGDLPPAPLAPAGPAPYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPVRPLGLPLGSRPAAVCTPSARVLGSPARSPAGPLAPSAACHPAPSTSASTAYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYAVRLQLQERVDELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIKMFQKKLSLHLSPIKVPSMGGRKRERKAAVEEDTSLSESDGPRHPDGDEEESAALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYALAAAEAPGEQPEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR", "length": 571, "header": "tr|F1SLR7-1|F1SLR7_PIG Computationally mapped isoform of Intermediate filament family orphan 1 OS=Sus scrofa OX=9823 GN=IFFO1 PE=4 SV=3 CANONICAL=A0A5G2QMT8-1" }, "locus": { "chromosome": "5", "start_pos": 64128191, "end_pos": 64116167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000757.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000757.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000741.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000741.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ACM7-1", "protein_name": "Intermediate filament family orphan 1", "gene_name": "Iffo1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNFSFHFLVSKEKAIELDPRYRGEEAVGKAASKVPEVLCLRSYSQDLRRWFPRKGESGSSNVDSTHRTSDPGKVQSKSSNEGFSLASSAPSFMTFGLLPGHLIGHSYSTNISLARLLTLCCTGLPLPAEGAAMNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLPSASLASAGPSAYSPPGPGSAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPARSPAGPLASSAACHSSSSTSTSTSTAFSSSTRFMPGTIWSFSHARRIGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVTELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDVIQMFQVPSMGGRKRERKAAVEEDTSLSESDGPRQPEGDEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSETEDSDRDVSSDSSMR", "length": 694 }, "evidence": [ { "id": "A0A5G2QMT8", "url": "https://omabrowser.org/oma/group/A0A5G2QMT8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0D2I5-1", "protein_name": "Non-homologous end joining factor IFFO1", "gene_name": "IFFO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDSLGGDHFAGGGDLPPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLGRRDQAVQTGFVSPIRPLGLQLGARPAAVCSPSARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQDRVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR", "length": 559 }, "evidence": [ { "id": "A0A5G2QMT8", "url": "https://omabrowser.org/oma/group/A0A5G2QMT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BXL9-1", "protein_name": "Non-homologous end joining factor IFFO1", "gene_name": "Iffo1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLASAPLASAGPSAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLPLSSRPAAVCPPSARVLGSPSRSPAGPLASSAACHTSSSTSTSTAFSSSTRFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVTELQEEAQEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCEDMIQMFQKKLVPSMGGRKRERKAAVEEDTSLSESDGPRQPEGAEEESTALSINEEMQRMLSQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSETEDSDRDVSSDSSMR", "length": 562 }, "evidence": [ { "id": "A0A5G2QMT8", "url": "https://omabrowser.org/oma/group/A0A5G2QMT8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMT8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 560, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMT8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMT8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMT8" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 527, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 311, "end_pos": 313 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMX5-1", "uniprot_ac": "A0A5G2QMX5", "uniprot_id": "A0A5G2QMX5_PIG", "mass": { "chemical_mass": 49639.0, "monoisotopic_mass": 49639.0 }, "refseq": {}, "gene_names": [ { "name": "ICOSLG", "type": "recommended", "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ] } ], "protein_names": [ { "name": "ICOS ligand", "type": "recommended", "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5/entry#names_and_taxonomy" } ] }, { "name": "B7 homolog 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5/entry#names_and_taxonomy" } ] }, { "name": "B7-like protein Gl50", "type": "synonym", "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5/entry#names_and_taxonomy" } ] }, { "name": "B7-related protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ICOSLG", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMX5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022246", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022246", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100:SF151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100:SF151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9927354", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9927354", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU56", "url": "https://www.uniprot.org/uniprotkb/I3LU56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU56-1", "url": "https://www.uniprot.org/uniprotkb/I3LU56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSRGPRSLVLVLPRPGGPGGRGLWGSEGSRGPSSPAARGLRPTMRLRSPRLLLLLFCGLRAVVAVSQEREVRAMVGSDVRLACVSLEEGSFDLNDVFVYWQISEPGKANAKSVVTYYLPENSSAGHSDNHYRDRAWLSLDSMRQGDFSLHLHNVTPQDEQKFNCLVFRKSLELRKILDVVVSLHVAANYSMPVVSGPSQDEELTFTCTSTNGYPRPNVYWINRTDGSLLDGALQSSTVSLNARGLYDVVSVLRIGRAPSVNVGCCIENVLLHQNLTSNQPEMFTGDKKSVPDGPAHDTLEAGSRPVLSVLGVLAMAVVVAVVTGWLCRNRCPHRSHTGRPSPHCPVGPHRSGAPGPSEPPSPPALSVSGLFHRCPGCEAGAGTCGARVTRAPARDEEGLTGGTASRDIVEAAGGRLGREGRGHHALRSCRDMEPPSLTGSPRQDPLTPESGCWAPPPSRWPL", "length": 463, "header": "tr|A0A5G2QMX5-1|A0A5G2QMX5_PIG Isoform 1 of ICOS ligand OS=Sus scrofa OX=9823 GN=ICOSLG PE=3 SV=2 CANONICAL=A0A5G2QMX5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5/entry", "sequence": { "sequence": "MGSRGPRSLVLVLPRPGGPGGRGLWGSEGSRGPSSPAARGLRPTMRLRSPRLLLLLFCGLRAVVAVSQEREVRAMVGSDVRLACVSLEEGSFDLNDVFVYWQISEPGKANAKSVVTYYLPENSSAGHSDNHYRDRAWLSLDSMRQGDFSLHLHNVTPQDEQKFNCLVFRKSLELRKILDVVVSLHVAANYSMPVVSGPSQDEELTFTCTSTNGYPRPNVYWINRTDGSLLDGALQSSTVSLNARGLYDVVSVLRIGRAPSVNVGCCIENVLLHQNLTSNQPEMFTGDKKSVPDGPAHDTLEAGSRPVLSVLGVLAMAVVVAVVTGWLCRNRCPHRSHTGRPSPHCPVGPHRSGAPGPSEPPSPPALSVSGLFHRCPGCEAGAGTCGARVTRAPARDEEGLTGGTASRDIVEAAGGRLGREGRGHHALRSCRDMEPPSLTGSPRQDPLTPESGCWAPPPSRWPL", "length": 463, "header": "tr|A0A5G2QMX5-1|A0A5G2QMX5_PIG Isoform 1 of ICOS ligand OS=Sus scrofa OX=9823 GN=ICOSLG PE=3 SV=2 CANONICAL=A0A5G2QMX5-1" }, "locus": { "chromosome": "13", "start_pos": 207115846, "end_pos": 207107355, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087735.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087735.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059666.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059666.2" } ] } }, { "isoform_ac": "I3LU56-1", "url": "https://www.uniprot.org/uniprotkb/I3LU56/entry", "sequence": { "sequence": "MGSRGPRSLVLVLPRPGGPGGRGLWGSEGSRGPSSPAARGLRPTMRLRSPRLLLLLFCGLRAVVAVSQEREVRAMVGSDVRLACVSLEEGSFDLNDVFVYWQISEPGKANAKSVVTYYLPENSSAGHSDNHYRDRAWLSLDSMRQGDFSLHLHNVTPQDEQKFNCLVFRKSLELRKILDVVVSLHVAANYSMPVVSGPSQDEELTFTCTSTNGYPRPNVYWINRTDGSLLDGALQSSTVSLNARGLYDVVSVLRIGRAPSVNVGCCIENVLLHQNLTSNQPEMFTGDKKSVPDGPAHDTLEAGSRPVLSVLGVLAMAVVVAVVTGWLCRNRCPHRSHTELV", "length": 341, "header": "tr|I3LU56-1|I3LU56_PIG Computationally mapped isoform of ICOS ligand OS=Sus scrofa OX=9823 GN=ICOSLG PE=3 SV=4 CANONICAL=A0A5G2QMX5-1" }, "locus": { "chromosome": "13", "start_pos": 207115846, "end_pos": 207107579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023021.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023021.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027655.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027655.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9927354", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9927354", "resource": "Reactome", "description": "Co-stimulation by ICOS" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "B cell activation", "id": "GO:0042113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042113", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" }, { "name": "T cell receptor signaling pathway", "id": "GO:0050852", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050852", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" }, { "name": "positive regulation of activated T cell proliferation", "id": "GO:0042104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042104", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMX5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 463, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMX5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMX5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 175, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 154, "end_pos": 156 }, { "start_pos": 189, "end_pos": 191 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 275, "end_pos": 277 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QMY8-1", "uniprot_ac": "A0A5G2QMY8", "uniprot_id": "A0A5G2QMY8_PIG", "mass": { "chemical_mass": 14567.0, "monoisotopic_mass": 14567.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QMY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QMY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050946", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050946", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QMY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKLISGASTGSRRKRAGLGPTESASRPRRGERSSGGDGPQSRRSRRERHCAQQLAATVLHARPGHTAAATRSRRTPSHVTTCAAAAASSAGSALLEKKKITLRTDSNPHYPPPPPPPPPLTRKGRPLTGRVICTRL", "length": 137, "header": "tr|A0A5G2QMY8-1|A0A5G2QMY8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMY8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8/entry", "sequence": { "sequence": "MEKLISGASTGSRRKRAGLGPTESASRPRRGERSSGGDGPQSRRSRRERHCAQQLAATVLHARPGHTAAATRSRRTPSHVTTCAAAAASSAGSALLEKKKITLRTDSNPHYPPPPPPPPPLTRKGRPLTGRVICTRL", "length": 137, "header": "tr|A0A5G2QMY8-1|A0A5G2QMY8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QMY8-1" }, "locus": { "chromosome": "9", "start_pos": 126480490, "end_pos": 126479318, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089953.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089953.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065413.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065413.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 22, "start_aa": "Thr", "end_pos": 22, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QMY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QMY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QMY8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN05-1", "uniprot_ac": "A0A5G2QN05", "uniprot_id": "A0A5G2QN05_PIG", "mass": { "chemical_mass": 21010.0, "monoisotopic_mass": 21010.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QN05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QN05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN05", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN05", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QN05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKAIYDKPTANIILNGEKLKAFPLKSRTRQGCPLSPLLFNIVLEVQATAVKQTKEIKGIQIGRGEVKLSLYADDMTLYIENSKDPTQKLLELIQKFSKVAGSKINIQKSVAFLYTNNEILEKKYKNTIPFKIAPHKIKCLGIHLTKVVKDLHAENYKSFIKEIKEDVEKWKIFHAPGLEKLIF", "length": 184, "header": "tr|A0A5G2QN05-1|A0A5G2QN05_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN05-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05/entry", "sequence": { "sequence": "MIKAIYDKPTANIILNGEKLKAFPLKSRTRQGCPLSPLLFNIVLEVQATAVKQTKEIKGIQIGRGEVKLSLYADDMTLYIENSKDPTQKLLELIQKFSKVAGSKINIQKSVAFLYTNNEILEKKYKNTIPFKIAPHKIKCLGIHLTKVVKDLHAENYKSFIKEIKEDVEKWKIFHAPGLEKLIF", "length": 184, "header": "tr|A0A5G2QN05-1|A0A5G2QN05_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN05-1" }, "locus": { "chromosome": "5", "start_pos": 98089824, "end_pos": 98089273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083059.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083059.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063493.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063493.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN05-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN05-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN05" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QN05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN05" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 145, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN06-1", "uniprot_ac": "A0A5G2QN06", "uniprot_id": "A0A5G2QN06_PIG", "mass": { "chemical_mass": 64686.0, "monoisotopic_mass": 64686.0 }, "refseq": { "ac": "XP_020945705", "name": "potassium voltage-gated channel subfamily A member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945705" }, "gene_names": [ { "name": "KCNA3", "type": "recommended", "evidence": [ { "id": "A0A5G2QN06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ] }, { "name": "KCNA3", "type": "synonym", "evidence": [ { "id": "XP_020945705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945705" } ] } ], "protein_names": [ { "name": "Potassium voltage-gated channel subfamily A member 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QN06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06/entry#names_and_taxonomy" } ] }, { "name": "potassium voltage-gated channel subfamily A member 3", "type": "synonym", "evidence": [ { "id": "XP_020945705", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945705" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06", "locus": { "chromosome": "4", "start_pos": 109497116, "end_pos": 109495350, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006802", "url": "https://www.ensembl.org/id/ENSSSCG00000006802" } ] } } ], "crossref": [ { "id": "A0A5G2QN06", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN06", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006802", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006802", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156614", "url": "https://www.ncbi.nlm.nih.gov/gene/100156614", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156614", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156614", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QN06", "url": "https://www.orthodb.org/?gene=A0A5G2QN06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11537:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11537:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296072", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296072", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020945705", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945705", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN06-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEHLSLLRSPPPPPSTRHRAHPPQHPASRGGGGGGGGGGGGDAHTLVNPGYAEPAAGPELPPDMTVVPGDHLLEPEAADGGGDPPQGGCGGGGGCDRYEPLPPALPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRDEKYYTASPSQELFEGGSNSTSGAPAGNSSFSDPFFVVETLCIIWFSFELLVRFFACPSKATFSRNIMNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYMHVGSCQHLSSSAEELRKARSNSTLSKSEYMVIEEGGMNHSAFPQTPFKTGNSTATCTTNNNPNSCVNIKKIFTDV", "length": 588, "header": "tr|A0A5G2QN06-1|A0A5G2QN06_PIG Isoform 1 of Potassium voltage-gated channel subfamily A member 3 OS=Sus scrofa OX=9823 GN=KCNA3 PE=4 SV=1 CANONICAL=A0A5G2QN06-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN06-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06/entry", "sequence": { "sequence": "MDEHLSLLRSPPPPPSTRHRAHPPQHPASRGGGGGGGGGGGGDAHTLVNPGYAEPAAGPELPPDMTVVPGDHLLEPEAADGGGDPPQGGCGGGGGCDRYEPLPPALPAAGEQDCCGERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPEFRDEKYYTASPSQELFEGGSNSTSGAPAGNSSFSDPFFVVETLCIIWFSFELLVRFFACPSKATFSRNIMNLIDIVAIIPYFITLGTELAERQGNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPTSGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYMHVGSCQHLSSSAEELRKARSNSTLSKSEYMVIEEGGMNHSAFPQTPFKTGNSTATCTTNNNPNSCVNIKKIFTDV", "length": 588, "header": "tr|A0A5G2QN06-1|A0A5G2QN06_PIG Isoform 1 of Potassium voltage-gated channel subfamily A member 3 OS=Sus scrofa OX=9823 GN=KCNA3 PE=4 SV=1 CANONICAL=A0A5G2QN06-1" }, "locus": { "chromosome": "4", "start_pos": 109497113, "end_pos": 109495350, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007450.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007450.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065242.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065242.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156614", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156614", "resource": "KEGG Pathway" }, { "id": "R-SSC-1296072", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296072", "resource": "Reactome", "description": "Voltage gated Potassium channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "delayed rectifier potassium channel activity", "id": "GO:0005251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005251", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" }, { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" }, { "name": "action potential", "id": "GO:0001508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" }, { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 564, "end_pos": 566, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN06-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 588, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN06-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN06" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QN06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN06" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 217, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 564, "end_pos": 566 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN15-1", "uniprot_ac": "A0A5G2QN15", "uniprot_id": "A0A5G2QN15_PIG", "mass": { "chemical_mass": 22006.0, "monoisotopic_mass": 22006.0 }, "refseq": { "ac": "XP_003125894", "name": "rho-related GTP-binding protein RhoC isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125894" }, "gene_names": [ { "name": "RHOC", "type": "recommended", "evidence": [ { "id": "A0A5G2QN15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ] }, { "name": "RHOC", "type": "synonym", "evidence": [ { "id": "XP_003125894", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125894" } ] } ], "protein_names": [ { "name": "Ras homolog family member C", "type": "synonym", "evidence": [ { "id": "A0A5G2QN15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15/entry#names_and_taxonomy" } ] }, { "name": "rho-related GTP-binding protein RhoC isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003125894", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125894" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RHOC", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15", "locus": { "chromosome": "4", "start_pos": 107737705, "end_pos": 107731539, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006777", "url": "https://www.ensembl.org/id/ENSSSCG00000006777" } ] } } ], "crossref": [ { "id": "A0A5G2QN15", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN15", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006777", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006777", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01870", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01870", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520019", "url": "https://www.ncbi.nlm.nih.gov/gene/100520019", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520019", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520019", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNGFIMF", "url": "https://omabrowser.org/oma/group/KNGFIMF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1T6K8", "url": "https://www.orthodb.org/?gene=A0A4X1T6K8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QN15", "url": "https://www.orthodb.org/?gene=A0A5G2QN15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416572", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416572", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625740", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5627117", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627117", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125894", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125894", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1T6K8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T6K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6K8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKM4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 193, "header": "tr|A0A5G2QN15-1|A0A5G2QN15_PIG Isoform 1 of Ras homolog family member C OS=Sus scrofa OX=9823 GN=RHOC PE=1 SV=1 CANONICAL=A0A5G2QN15-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T6K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6K8/entry", "sequence": { "sequence": "MELVGAAPAMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 202, "header": "tr|A0A4X1T6K8-1|A0A4X1T6K8_PIG Computationally mapped isoform of Ras homolog family member C OS=Sus scrofa OX=9823 GN=RHOC PE=1 SV=1 CANONICAL=A0A5G2QN15-1" }, "locus": { "chromosome": "4", "start_pos": 107737276, "end_pos": 107733131, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007423.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007423.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007228.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007228.3" } ] } }, { "isoform_ac": "A0A5G2QN15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15/entry", "sequence": { "sequence": "MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 193, "header": "tr|A0A5G2QN15-1|A0A5G2QN15_PIG Isoform 1 of Ras homolog family member C OS=Sus scrofa OX=9823 GN=RHOC PE=1 SV=1 CANONICAL=A0A5G2QN15-1" }, "locus": { "chromosome": "4", "start_pos": 107737276, "end_pos": 107735038, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073731.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073731.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066282.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066282.1" } ] } }, { "isoform_ac": "A0A8W4FKM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM4/entry", "sequence": { "sequence": "SRLLGAEGAMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 202, "header": "tr|A0A8W4FKM4-1|A0A8W4FKM4_PIG Computationally mapped isoform of Ras homolog family member C OS=Sus scrofa OX=9823 GN=RHOC PE=1 SV=1 CANONICAL=A0A5G2QN15-1" }, "locus": { "chromosome": "4", "start_pos": 107737276, "end_pos": 107734431, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098180.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098180.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080026.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080026.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520019", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520019", "resource": "KEGG Pathway" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-416572", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416572", "resource": "Reactome", "description": "Sema4D induced cell migration and growth-cone collapse" }, { "id": "R-SSC-5625740", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "resource": "Reactome", "description": "RHO GTPases activate PKNs" }, { "id": "R-SSC-5625900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625900", "resource": "Reactome", "description": "RHO GTPases activate CIT" }, { "id": "R-SSC-5627117", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627117", "resource": "Reactome", "description": "RHO GTPases Activate ROCKs" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IDS4-1", "protein_name": "Rho-related GTP-binding protein RhoC", "gene_name": "Rhoc", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 193 }, "evidence": [ { "id": "A0A5G2QN15", "url": "https://omabrowser.org/oma/group/A0A5G2QN15/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1RMJ6-1", "protein_name": "Rho-related GTP-binding protein RhoC", "gene_name": "RHOC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 193 }, "evidence": [ { "id": "A0A5G2QN15", "url": "https://omabrowser.org/oma/group/A0A5G2QN15/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q62159-1", "protein_name": "Rho-related GTP-binding protein RhoC", "gene_name": "Rhoc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL", "length": 193 }, "evidence": [ { "id": "A0A5G2QN15", "url": "https://omabrowser.org/oma/group/A0A5G2QN15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "apical junction assembly", "id": "GO:0043297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043297", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032956", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "positive regulation of protein-containing complex assembly", "id": "GO:0031334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031334", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "positive regulation of stress fiber assembly", "id": "GO:0051496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051496", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cleavage furrow", "id": "GO:0032154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" }, { "name": "stereocilium", "id": "GO:0032420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032420", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 193, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN15" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN35-1", "uniprot_ac": "A0A5G2QN35", "uniprot_id": "A0A5G2QN35_PIG", "mass": { "chemical_mass": 7848.0, "monoisotopic_mass": 7848.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "UEV domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QN35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN35", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041063", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041063", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11685", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11685", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23306", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23306", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23306:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23306:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QN35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRFFESLYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGKCVCDLCF", "length": 67, "header": "tr|A0A5G2QN35-1|A0A5G2QN35_PIG Isoform 1 of UEV domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QN35-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35/entry", "sequence": { "sequence": "MLRFFESLYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGKCVCDLCF", "length": 67, "header": "tr|A0A5G2QN35-1|A0A5G2QN35_PIG Isoform 1 of UEV domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QN35-1" }, "locus": { "chromosome": "2", "start_pos": 40683343, "end_pos": 40680354, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065458.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065458.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 67, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN35" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QN35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN35" }, { "id": "PS51322", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UEV", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 67, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN49-1", "uniprot_ac": "A0A5G2QN49", "uniprot_id": "A0A5G2QN49_PIG", "mass": { "chemical_mass": 20893.0, "monoisotopic_mass": 20893.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QN49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN49", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044953", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044953", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR025884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF14048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16564", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16564", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9937850", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937850", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQALEEKRQVHLARTKQRHRDRSGLPLRLTSCIFKRPVTKTTAHPGNKVRHSQQEETLKKPQQVCAFRRLQGLQACSPEGDLFSTLDSAKVVRDIAPGGAVESNSLAGARSLHPSTKAIPAQSSDGAEMIPGLGLFLPESLCKQPVITYGHIRRQAQKVKKARERLAMALRADKLAREAERLHSRKK", "length": 188, "header": "tr|A0A5G2QN49-1|A0A5G2QN49_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN49-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN49-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49/entry", "sequence": { "sequence": "MPQALEEKRQVHLARTKQRHRDRSGLPLRLTSCIFKRPVTKTTAHPGNKVRHSQQEETLKKPQQVCAFRRLQGLQACSPEGDLFSTLDSAKVVRDIAPGGAVESNSLAGARSLHPSTKAIPAQSSDGAEMIPGLGLFLPESLCKQPVITYGHIRRQAQKVKKARERLAMALRADKLAREAERLHSRKK", "length": 188, "header": "tr|A0A5G2QN49-1|A0A5G2QN49_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN49-1" }, "locus": { "chromosome": "2", "start_pos": 72050145, "end_pos": 72049196, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090375.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090375.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066317.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066317.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9937850", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937850", "resource": "Reactome", "description": "NuRD complex assembly" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "pmid": "" }, { "name": "DNA methylation-dependent constitutive heterochromatin formation", "id": "GO:0006346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006346", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "methyl-CpG binding", "id": "GO:0008327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008327", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN49", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 188, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN49" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QN49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" }, { "id": "PF14048", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14048" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyl-CpG binding protein 2/3 C-terminal", "eco_id": "ECO_0000259", "start_pos": 81, "end_pos": 171, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QN49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN49" }, { "id": "PF16564", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16564" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyl-CpG-binding", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 76, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN60-1", "uniprot_ac": "A0A5G2QN60", "uniprot_id": "A0A5G2QN60_PIG", "mass": { "chemical_mass": 16738.0, "monoisotopic_mass": 16738.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DUF1725 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QN60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN60", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN60", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN60", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042626", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042626", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QN60", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN60-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLHVHCSIIHNSQDMETTKCPLADDWIKKMWYIHTMEYYSAIKKNKIMPFTATWMERETLILSEVSQKDKDKCHMIITYIWKLIYGTKKPFTEKKLREQTCSCQGEVGGSGMDWEFGVDRWKLAFGMDKNEILLCSTGNYV", "length": 142, "header": "tr|A0A5G2QN60-1|A0A5G2QN60_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN60-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN60-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60/entry", "sequence": { "sequence": "MHLHVHCSIIHNSQDMETTKCPLADDWIKKMWYIHTMEYYSAIKKNKIMPFTATWMERETLILSEVSQKDKDKCHMIITYIWKLIYGTKKPFTEKKLREQTCSCQGEVGGSGMDWEFGVDRWKLAFGMDKNEILLCSTGNYV", "length": 142, "header": "tr|A0A5G2QN60-1|A0A5G2QN60_PIG Isoform 1 of DUF1725 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN60-1" }, "locus": { "chromosome": "5", "start_pos": 93068081, "end_pos": 93066642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079881.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079881.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065483.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065483.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN60", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN60" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN60-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 142, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN60-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN60" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN92-1", "uniprot_ac": "A0A5G2QN92", "uniprot_id": "A0A5G2QN92_PIG", "mass": { "chemical_mass": 14335.0, "monoisotopic_mass": 14335.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QN92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN92", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN92", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QN92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSMFNFLRNLHTAVHSGCTNLQSHQQCDRVPFFLHPLQHLLFLDFWMMAILAGGRWYLIVVLICISLIMSDIEHLFMCFLAICMSSLENCLFRSSAHFLMGLFVFLVWSCRRCL", "length": 125, "header": "tr|A0A5G2QN92-1|A0A5G2QN92_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN92-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92/entry", "sequence": { "sequence": "MPRSGIAGSNGSSMFNFLRNLHTAVHSGCTNLQSHQQCDRVPFFLHPLQHLLFLDFWMMAILAGGRWYLIVVLICISLIMSDIEHLFMCFLAICMSSLENCLFRSSAHFLMGLFVFLVWSCRRCL", "length": 125, "header": "tr|A0A5G2QN92-1|A0A5G2QN92_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN92-1" }, "locus": { "chromosome": "6", "start_pos": 46111471, "end_pos": 46111097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082411.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082411.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066368.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066368.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN92-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 125, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN92-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN92" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QN96-1", "uniprot_ac": "A0A5G2QN96", "uniprot_id": "A0A5G2QN96_PIG", "mass": { "chemical_mass": 12787.0, "monoisotopic_mass": 12787.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QN96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96", "locus": {} } ], "crossref": [ { "id": "A0A5G2QN96", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042409", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042409", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QN96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFVRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLPFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QN96-1|A0A5G2QN96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN96-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFVRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLPFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QN96-1|A0A5G2QN96_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QN96-1" }, "locus": { "chromosome": "13", "start_pos": 121819500, "end_pos": 121819165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088317.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088317.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066134.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066134.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QN96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QN96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QN96" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNA9-1", "uniprot_ac": "A0A5G2QNA9", "uniprot_id": "A0A5G2QNA9_PIG", "mass": { "chemical_mass": 117997.0, "monoisotopic_mass": 117997.0 }, "refseq": { "ac": "XP_003481759", "name": "PDZ domain-containing RING finger protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481759" }, "gene_names": [ { "name": "PDZRN4", "type": "recommended", "evidence": [ { "id": "A0A5G2QNA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" } ] }, { "name": "PDZRN4", "type": "synonym", "evidence": [ { "id": "XP_003481759", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481759" } ] } ], "protein_names": [ { "name": "PDZ domain containing ring finger 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QNA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9/entry#names_and_taxonomy" } ] }, { "name": "PDZ domain-containing RING finger protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481759", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481759" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDZRN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9", "locus": { "chromosome": "5", "start_pos": 72940818, "end_pos": 72574302, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000791", "url": "https://www.ensembl.org/id/ENSSSCG00000000791" } ] } } ], "crossref": [ { "id": "A0A5G2QNA9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000791", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000791", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06715", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06716", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06716", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16719", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16719", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156795", "url": "https://www.ncbi.nlm.nih.gov/gene/100156795", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156795", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156795", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMEQDYY", "url": "https://omabrowser.org/oma/group/TMEQDYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QNA9", "url": "https://www.orthodb.org/?gene=A0A5G2QNA9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15545", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15545", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15545:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15545:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481759", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481759", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH06", "url": "https://www.uniprot.org/uniprotkb/F1SH06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH06-1", "url": "https://www.uniprot.org/uniprotkb/F1SH06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFALERFIEAVDPDFQCRLCGQVLEEPLCTPCGHVFCARCLRPWAARWRRCPLQCQPLAPGELYRVLPLRSLVQKLRIQCDYRARGCGRSVRLRELAAHVERCDFGPGHRRRRRRRGCISEPRCLGGGNVPARGSCGSAPGVRRGGGGGARRGPPGIRGGSGRGPGSRVLAWRRREKALLVQLWALQGEVQLTARRYQEKFTQYMAHVRNFARDLGGGHGRDGEHKPFTIVLERENDTLGFNIIGGRPNQNNQEETSMEGIYVSKISQNGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTQLNKPAYGTAPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDSGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQDREAAVALLSSDECRRIVLLVARPESQLDEGWLEDERNEFLEELNLGMLEEQHNEAMQRAANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENTAEAPKGTSLKSKRELGQSQDTLGSVELQYNESFVSGEYIDSDCTGNQDEECERFRQLLELKCKIRKHEEYDLYYSSRTVGCNHGGQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSIDTQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTMAAHQSSSGLSSKESTSTKAKTTEQGCSIEGKEKPSEGSKLSDQDPTGGEHVPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKVRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSREERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVPNAFLSVTTV", "length": 1042, "header": "tr|A0A5G2QNA9-1|A0A5G2QNA9_PIG Isoform 1 of PDZ domain containing ring finger 4 OS=Sus scrofa OX=9823 GN=PDZRN4 PE=4 SV=1 CANONICAL=A0A5G2QNA9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9/entry", "sequence": { "sequence": "MGFALERFIEAVDPDFQCRLCGQVLEEPLCTPCGHVFCARCLRPWAARWRRCPLQCQPLAPGELYRVLPLRSLVQKLRIQCDYRARGCGRSVRLRELAAHVERCDFGPGHRRRRRRRGCISEPRCLGGGNVPARGSCGSAPGVRRGGGGGARRGPPGIRGGSGRGPGSRVLAWRRREKALLVQLWALQGEVQLTARRYQEKFTQYMAHVRNFARDLGGGHGRDGEHKPFTIVLERENDTLGFNIIGGRPNQNNQEETSMEGIYVSKISQNGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTQLNKPAYGTAPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDSGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQDREAAVALLSSDECRRIVLLVARPESQLDEGWLEDERNEFLEELNLGMLEEQHNEAMQRAANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENTAEAPKGTSLKSKRELGQSQDTLGSVELQYNESFVSGEYIDSDCTGNQDEECERFRQLLELKCKIRKHEEYDLYYSSRTVGCNHGGQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSIDTQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTMAAHQSSSGLSSKESTSTKAKTTEQGCSIEGKEKPSEGSKLSDQDPTGGEHVPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKVRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSREERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVPNAFLSVTTV", "length": 1042, "header": "tr|A0A5G2QNA9-1|A0A5G2QNA9_PIG Isoform 1 of PDZ domain containing ring finger 4 OS=Sus scrofa OX=9823 GN=PDZRN4 PE=4 SV=1 CANONICAL=A0A5G2QNA9-1" }, "locus": { "chromosome": "5", "start_pos": 72937953, "end_pos": 72574501, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070899.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070899.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066383.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066383.1" } ] } }, { "isoform_ac": "F1SH06-1", "url": "https://www.uniprot.org/uniprotkb/F1SH06/entry", "sequence": { "sequence": "MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTQLNKPAYGTAPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDSGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQDREAAVALLSSDECRRIVLLVARPESQLDEGWLEDERNEFLEELNLGMLEEQHNEAMQRAANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENTAEAPKGTSLKSKRELGQSQDTLGSVELQYNESFVSGEYIDSDCTGNQDEECERFRQLLELKCKIRKHEEYDLYYSSRTVGCNHGGQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSIDTQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTMAAHQSSSGLSSKESTSTKAKTTEQGCSIEGKEKPSEGSKLSDQDPTGGEHVPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKVRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSREERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEVSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVPNAFLSVTTV", "length": 778, "header": "tr|F1SH06-1|F1SH06_PIG Computationally mapped isoform of PDZ domain containing ring finger 4 OS=Sus scrofa OX=9823 GN=PDZRN4 PE=4 SV=3 CANONICAL=A0A5G2QNA9-1" }, "locus": { "chromosome": "5", "start_pos": 72937953, "end_pos": 72788202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000857.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000857.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000840.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000840.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156795", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156795", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XDD9-1", "protein_name": "PDZ domain containing ring finger 4", "gene_name": "PDZRN4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSHISSITRDLTGSQRGKAGEPKPLTIMLHRENDTLGFNIIGGRPNQNNQEESAEGIYVSKILENGPADKAEGLQIHDKIIEIKEDGFFPSLSQDSEAEVLEISKGTFIFFKTPSWLVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRAPISKTHGSSQDVRLVDACTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLQPVEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSDECKKIVLLVARPELQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATSSSNNHEKDSGVGPTDESLRNDESSEQENAPEEQNGATLQNKRELGHSQDTLGSVELQCNESFVSGEYIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSTIECNRREQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWALHDEGFRNYNTSIDVQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNRKNLRSTIVANQSSSGQSNKETVSVKTKPTEQNSTAEGTVLASENSRFTDQEKQSTEHIPYLSPYHSSSYRYGNIPAHAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV", "length": 871 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZNV5-1", "protein_name": "PDZ domain containing RING finger 4", "gene_name": "Pdzrn4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRTAKEPIVVQVLRRTPLSRPPYGMAPEVQLMNASTQTDITFEHIMALAKLRPLTPPVPDTCPFLLSDSCHSLHPMERAFYEDHEYVSSLPADADRAEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSDECKRIVLLIARPDLQLDEGWLEDERNEFLEELNSEMLEEERNEGAQCTANELQQPKKQEEEEGTTDTATSSSNNQEKDSGVGRTDESLRNDESSEQENVVEEPHSTALKSKRELGQSQDTLGSIELQCNQSCAGGECLDSDCASNQEVCEGFQQLLELKIRNHGDYDLYYSSSTLECNQGEQDGVEHELKLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSLDMQRGKLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSMMTAHQSPSRPSTREYTATKVKTTHEGCSVESLEKSLENSQLLDQEHTVSEHTPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESPRGSEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLESLKESPQSSGEGKKELSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV", "length": 775 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PUZ9-1", "protein_name": "PDZ domain containing RING finger 4", "gene_name": "Pdzrn4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGFALERLAEAVDPAFQCQLLCGQVLEEPACTPCGHVFCASCLLPWAAGRRWCPLQCQPLAPGELYRVLPLRSLVQQLRVQCNYSGQGCGHRGDCGCWQCTSSAAPSALPAAVTATAQAAAEAAGRKSTRRPRPAGVGTRVRGHPDLEVGLWLSPAVGVGKTRRAQVSLLQRRYQEKLALYMAHTRNFVGNPGGRGQDGEQKPFTVVLEREDDTLGFNIIGGRPYQNSQKQSAPEGIYVSKILENGPADRADGLEVHDKIIAVNGRDLSKATHEEAVEAFRTAKEPIVVQVLRRTPLSRPTYGMTPEVQLTNASTQTDITFEHIMALAKLRPLTPPVPDTCPFLLSDSCHSLHPMEHGFYEDHEYVSSLPADADRADDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSDECKRIVLLIARPDMQLDEGWLEDERNEFLEELNSELLEEDHNEGAQRTASELQQPKKQEEEEGTTDTATSSSNNQEKDSGVGRTDESLRNDESSEQENAVEEPHSTTLKSKRELGKSQDTLGSLEHQCSESCAGGECLDSDCASNQEVCEGFQQLLELKIRNHGDYDLYYSSSTIECNRGEQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYNTSLDVQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSMMTAHQSPPRQSTREYTSTKVKATDEGCSVESLEKGLESSQLLDQEHTVSEHPPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQRGSEPKMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLESLKESPQSSGEGKKELSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV", "length": 1014 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MUR5-1", "protein_name": "PDZ domain containing ring finger 4", "gene_name": "PDZRN4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFALERFAESVDPDFQCRLCGQVLEEPRCTPCGHVFCARCLLPWAARRRRCPLQCRPLAPGELYRVLPLRSLVQKLRIQCDYRPRGCGRSVQLSELAAHVERCDFGPASRRHLGSVSRPDGPGSGDRSVRGGCRSAPGIRRGGGGGSRGGSPGVCGRSWRGPGPRVWRRREKALLAQLWELQGEVRLIARRYQEKLTQYMAHVRNFVRDLGGGHDAEGEHKPLTIVLERENDTLGFNIIGGRPNQNNQEETPMEGIYISKILKNGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSKPAYGTAPEVRLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADPDRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSKVDPNSIAAKDGRIREGDHILQINGEDVQDREAAVAQLSSDECRRILLLVARPESQVDEGWLEDERNELLEELNLAMLEEQHNEVMQRTADEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENATEDPNGTSLKSKRELGQSQDTLGSVELQCNESFVSGEYIDSDCIGNQDEECERFRQLLELKCKIRKHGEYDLYYSSSTIECNQGGREGVEHELQLLNEELRNIELECQTIMQTHRLQKVTDQYGDIWALHDGGFRSYNTSIDTQRGKLDDILEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVISLTNKKNLRSTMAANQSSSGQNTKESTCTKAKTSEQGCVIEGKEKTSESSKLSDPEKTSSEHIPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSVCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEVNIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTQVPNAFLSVTTV", "length": 1037 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6ZMN7-1", "protein_name": "PDZ domain-containing RING finger protein 4", "gene_name": "PDZRN4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFALERFAEAVDPALECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRVLPLRSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPARRLRSRGGCASGLGGGEVPARGGCGPTPRAGRGGGARGGPPGGRWGRGRGPGPRVLAWRRREKALLAQLWALQGEVQLTARRYQEKFTQYMAHVRNFVGDLGGGHRRDGEHKPFTIVLERENDTLGFNIIGGRPNQNNQEGTSTEGIYVSKILENGPADRADGLEIHDKIMEVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECKRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRDLGQSQDTLGSVELQYNESLVSGEYIDSDCIGNPDEDCERFRQLLELKCKIRNHGEYDLYYSSSTIECNQGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFRNYNTSIDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVSEHIPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV", "length": 1036 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8MR31-1", "protein_name": "Slo-interacting protein 1", "gene_name": "Slip1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIADVEYEYVVLKINGYDISHLSRYEAVQKFLQSKETLVVEIRRQKHNALDLELKHGSNAKISKVDNPGELSVLTDKSAEGTITAASASQQINCPSSTSLKEIETKTPVVLTLRARSHEDRLGSLQAASKETQTQSVVGTDVLKDNDLVNTITDNFIEHEHHLFEQCLEPEIDIEEVTLVKGVEQSSSNQIGLIVTSSGIQQSSTDTNKGDILGNVLEHSEDVFISGVQPESIAYRDGRLRQGDQILRINGLDVKNQEELETQIARSSTSVTLLVSRILYPEDDDDEDIHFEYANTFLPDDYTNVVDKLDKVLLTHVKSLEELSNKSAMQSDECYHIPEKNSSDSNVKISSLAKNIIEQSTKSCSKIKLRPNANLDYKKKFNLPLSQEEVHLQYEYDESEHIYETIPEDSESEPVYCSPYQRSNDKTSIGCSSPIASRPAESLERTMQQQTQRVAQWLGLKPQYQKTRQTLVGRPPPLKLVQQPTCSRVFTLRSTLTNTSASSSSGVAYSSYGQNNVVTGNAAAPGEEVDNSSSAYNTGDSNNSASPHQNTTNPDEAIATGRKLDSTVIDSPNDHLDATGVSTMLLLPFGKSGRIGLCSSNLPTAYVSERYTNVGSENEIHPLKSDIEILRVKPTDDSYSHCPQFNAPNLSSYHFVSSQEVANRCHISTSLQKNATLLNGESAEEIPMVWKVKRRPDGTRYIVKRPVRNRPQVALRKNMRYNEVTTTEDDTISEVKIGRYWTKEERKRHIERAREKRHHQTQQQQQ", "length": 767 }, "evidence": [ { "id": "A0A5G2QNA9", "url": "https://omabrowser.org/oma/group/A0A5G2QNA9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 609, "end_pos": 611, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 771, "end_pos": 773, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNA9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1042, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNA9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNA9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 320, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNA9" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 54, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 237, "end_pos": 239 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 609, "end_pos": 611 }, { "start_pos": 717, "end_pos": 719 }, { "start_pos": 771, "end_pos": 773 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNB0-1", "uniprot_ac": "A0A5G2QNB0", "uniprot_id": "A0A5G2QNB0_PIG", "mass": { "chemical_mass": 81766.0, "monoisotopic_mass": 81766.0 }, "refseq": {}, "gene_names": [ { "name": "CNTNAP3", "type": "recommended", "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" } ] } ], "protein_names": [ { "name": "Contactin-associated protein-like 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNTNAP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNB0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033204", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033204", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00057", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00057", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPVAGAFLRMLALLSAQPWSTLAAGNTYNCDAPLASALPRTSFSSSSELSSSHGPGFASLNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLTWNPKGRIGMRIEVYGCAYRSEMVNFDGKSSLLYTFHEKSMNPDQDVISLKFKTRENNGVLLHREGQNGKHITLELVKGKLILFLNSGDANQPSPDTLTLGSLLDDQHWHSVLIELLNTDVNFTVDMHTHHFQAKGGSSYLDLDYEISFGGIPGHRKSVVFPRKNFHGCFENLYYNGVDIIDLSKKHKPQILLMGNVSFSCSHPQTVPVTFLSPRSYLALPGTSGEDKVSVMFQFRTWNRAGLLLTSQFQDRSGALILVLNDGKLKLNLSQPGHPARDVTAGARLNDGQWHSVSLTAKGSHLSVMVDGEAASMAHSLVPIESGDTYYLGGCPDNSSGPGCANPLGGFQGCLRLISIGDKAVDPISVQQGALGSFRDLQIDTCGLTDRCLPSYCEHGGECSQSWDTFSCDCAHTGYTGATCHSSLYEQSCEAHRHRGNSSGLYYIDSDGSGPLGVSLVYCNMTDTTWTSVQHNGSHWVRVKSWNGESPRPMVFKYTASMDQLQAIIDHADHCRQQLTFHCKRSRPSTSHDGTPVSWWVGRTNETHTYWGGSLPDAQKCTCGLEGNCIDSQYYCNCDADRNEW", "length": 741, "header": "tr|A0A5G2QNB0-1|A0A5G2QNB0_PIG Isoform 1 of Contactin-associated protein-like 3 OS=Sus scrofa OX=9823 GN=CNTNAP3 PE=3 SV=1 CANONICAL=A0A5G2QNB0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0/entry", "sequence": { "sequence": "MDPVAGAFLRMLALLSAQPWSTLAAGNTYNCDAPLASALPRTSFSSSSELSSSHGPGFASLNRRDGAGGWSPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPLTWNPKGRIGMRIEVYGCAYRSEMVNFDGKSSLLYTFHEKSMNPDQDVISLKFKTRENNGVLLHREGQNGKHITLELVKGKLILFLNSGDANQPSPDTLTLGSLLDDQHWHSVLIELLNTDVNFTVDMHTHHFQAKGGSSYLDLDYEISFGGIPGHRKSVVFPRKNFHGCFENLYYNGVDIIDLSKKHKPQILLMGNVSFSCSHPQTVPVTFLSPRSYLALPGTSGEDKVSVMFQFRTWNRAGLLLTSQFQDRSGALILVLNDGKLKLNLSQPGHPARDVTAGARLNDGQWHSVSLTAKGSHLSVMVDGEAASMAHSLVPIESGDTYYLGGCPDNSSGPGCANPLGGFQGCLRLISIGDKAVDPISVQQGALGSFRDLQIDTCGLTDRCLPSYCEHGGECSQSWDTFSCDCAHTGYTGATCHSSLYEQSCEAHRHRGNSSGLYYIDSDGSGPLGVSLVYCNMTDTTWTSVQHNGSHWVRVKSWNGESPRPMVFKYTASMDQLQAIIDHADHCRQQLTFHCKRSRPSTSHDGTPVSWWVGRTNETHTYWGGSLPDAQKCTCGLEGNCIDSQYYCNCDADRNEW", "length": 741, "header": "tr|A0A5G2QNB0-1|A0A5G2QNB0_PIG Isoform 1 of Contactin-associated protein-like 3 OS=Sus scrofa OX=9823 GN=CNTNAP3 PE=3 SV=1 CANONICAL=A0A5G2QNB0-1" }, "locus": { "chromosome": "14", "start_pos": 3458968, "end_pos": 3295507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075201.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075201.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066154.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 597, "end_pos": 599, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNB0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 741, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNB0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 544, "end_pos": 581, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" }, { "id": "PS50022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F5/8 type C", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 177, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" }, { "id": "PS51406", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrinogen C-terminal", "eco_id": "ECO_0000259", "start_pos": 580, "end_pos": 631, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB0" }, { "id": "PS50025", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50025" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin G", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 361, "start_aa": "Met", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 428, "end_pos": 430 }, { "start_pos": 494, "end_pos": 496 }, { "start_pos": 597, "end_pos": 599 }, { "start_pos": 620, "end_pos": 622 }, { "start_pos": 632, "end_pos": 634 }, { "start_pos": 701, "end_pos": 703 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNB1-1", "uniprot_ac": "A0A5G2QNB1", "uniprot_id": "A0A5G2QNB1_PIG", "mass": { "chemical_mass": 78016.0, "monoisotopic_mass": 78016.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QNB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QNB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046979", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046979", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKGGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALERNTKIRYLLKLYLTKSNTSEYT", "length": 674, "header": "tr|A0A5G2QNB1-1|A0A5G2QNB1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNB1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1/entry", "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKGGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALERNTKIRYLLKLYLTKSNTSEYT", "length": 674, "header": "tr|A0A5G2QNB1-1|A0A5G2QNB1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNB1-1" }, "locus": { "chromosome": "AEMK02000434.1", "start_pos": 145637, "end_pos": 143616, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088203.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088203.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059801.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059801.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNB1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 674, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNB1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 664, "start_aa": "Lys", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNB3-1", "uniprot_ac": "A0A5G2QNB3", "uniprot_id": "A0A5G2QNB3_PIG", "mass": { "chemical_mass": 12199.0, "monoisotopic_mass": 12199.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QNB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNB3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QNB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSFSFLRNLHTAFHSSCTNLQSHQQCNRVPFSPHALQHLLFVDFLMMAILAGIRWYLIVVLICISLIMSDVEHVFMCFLAIVCLLWRFVCLDLLPIF", "length": 107, "header": "tr|A0A5G2QNB3-1|A0A5G2QNB3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNB3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3/entry", "sequence": { "sequence": "MPRSGIAGSNGSFSFLRNLHTAFHSSCTNLQSHQQCNRVPFSPHALQHLLFVDFLMMAILAGIRWYLIVVLICISLIMSDVEHVFMCFLAIVCLLWRFVCLDLLPIF", "length": 107, "header": "tr|A0A5G2QNB3-1|A0A5G2QNB3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNB3-1" }, "locus": { "chromosome": "3", "start_pos": 93963978, "end_pos": 93963658, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087543.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087543.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066388.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066388.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNB3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNB3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNB9-1", "uniprot_ac": "A0A5G2QNB9", "uniprot_id": "A0A5G2QNB9_PIG", "mass": { "chemical_mass": 45582.0, "monoisotopic_mass": 45582.0 }, "refseq": {}, "gene_names": [ { "name": "EXT2", "type": "recommended", "evidence": [ { "id": "A0A5G2QNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ] } ], "protein_names": [ { "name": "Exostosin glycosyltransferase 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EXT2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNB9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013281", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013281", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11062:SF381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11062:SF381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022928", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022928", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCASVKYNIRGPALIPRMKTKHRIYYVTLFSIVLLGLIATGMFQFWPHSIESSSDWSVEKRSVRDVPVVRLPADSPVPERGDLSCRMHTCFDVYRCGFNPKNKIKVYIYSLKKYVDDYNELLTAISDSDYYTDDITRACLFVPSIDVLNQHTLRVKETAQALAQLSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPLSAEVDLPEKGPGPRRFFLLSSQVALHPEYREELDALQARHGEAVLVLDKCTNLSEGVPAARKRCHKHQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGCVPVVIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQMEEMQRQVRGQAGPSAETAQDAGPASREGCLCSM", "length": 406, "header": "tr|A0A5G2QNB9-1|A0A5G2QNB9_PIG Isoform 1 of Exostosin glycosyltransferase 2 OS=Sus scrofa OX=9823 GN=EXT2 PE=3 SV=1 CANONICAL=A0A5G2QNB9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9/entry", "sequence": { "sequence": "MCASVKYNIRGPALIPRMKTKHRIYYVTLFSIVLLGLIATGMFQFWPHSIESSSDWSVEKRSVRDVPVVRLPADSPVPERGDLSCRMHTCFDVYRCGFNPKNKIKVYIYSLKKYVDDYNELLTAISDSDYYTDDITRACLFVPSIDVLNQHTLRVKETAQALAQLSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPLSAEVDLPEKGPGPRRFFLLSSQVALHPEYREELDALQARHGEAVLVLDKCTNLSEGVPAARKRCHKHQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLRAGCVPVVIADSYVLPFSEVLDWKRASVVVPEEKMSDVYSILQSIPRRQMEEMQRQVRGQAGPSAETAQDAGPASREGCLCSM", "length": 406, "header": "tr|A0A5G2QNB9-1|A0A5G2QNB9_PIG Isoform 1 of Exostosin glycosyltransferase 2 OS=Sus scrofa OX=9823 GN=EXT2 PE=3 SV=1 CANONICAL=A0A5G2QNB9-1" }, "locus": { "chromosome": "2", "start_pos": 18232025, "end_pos": 18209105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091136.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091136.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059811.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059811.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022928", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022928", "resource": "Reactome", "description": "HS-GAG biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "acetylglucosaminyltransferase activity", "id": "GO:0008375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008375", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "pmid": "" }, { "name": "N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity", "id": "GO:0050509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "heparan sulfate proteoglycan biosynthetic process", "id": "GO:0015012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNB9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 406, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNB9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNB9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNB9" }, { "id": "PF03016", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Exostosin GT47", "eco_id": "ECO_0000259", "start_pos": 101, "end_pos": 368, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNC3-1", "uniprot_ac": "A0A5G2QNC3", "uniprot_id": "A0A5G2QNC3_PIG", "mass": { "chemical_mass": 70608.0, "monoisotopic_mass": 70608.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC148", "type": "recommended", "evidence": [ { "id": "A0A5G2QNC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 148", "type": "synonym", "evidence": [ { "id": "A0A5G2QNC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC148", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNC3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015876", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015876", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21549", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21549", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21549:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21549:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27813", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27813", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BEZ8", "url": "https://www.uniprot.org/uniprotkb/A0A287BEZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHSASASPGNLVLCMKNEIRSTKYKPVDYQQLQALTEAKRLASASAELKIRKAVQTSKISKEQTLIKQHKQVWWQEHQRLNEVRCKIESEIKSFLNEENIGNECLSDLMNFEQELSEQGCAYLKNVIDPIQQLRADLKYRQYHISQHPHSHSEFNSVKVLEEVDFVKKQLKAVFESLKLEQQKIENSISDWSVKIADHSSEERSNLLSELPMELEALECPYPDLKSSILNGFRDFTEKYQKKLQVLDQQLEDIYRNYQLSDEDHWLYQAILDQYPGNLCGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAKEQRKILMSNWHKNRRDFIQKAVLTLAEACTAHEMESMLAKDRKKQQEVCADLKAKVLQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQREEKKKKIRQYWAKKEQKWQEMEMRDLQRLEELKKLMAEQSVKDRERVKYRQEVLEKRLMEKKEVALQEALEEEERERRLEALRKQVAIVAQFDPVRMMSDTMASKARMGIGIEEEFILQKPLFTLNTYNEQQIISDPRLRFELALREAGLHKTFYAKQLLPKISPQKPPRKDMESTIFKI", "length": 591, "header": "tr|A0A5G2QNC3-1|A0A5G2QNC3_PIG Isoform 1 of Coiled-coil domain containing 148 OS=Sus scrofa OX=9823 GN=CCDC148 PE=4 SV=1 CANONICAL=A0A5G2QNC3-1" }, "isoforms": [ { "isoform_ac": "A0A287BEZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEZ8/entry", "sequence": { "sequence": "MENMNKRDQSFMTNQRNDSSGNLVLCMKNEIRSTKYKPVDYQQLQALTEAKRLASASAELKIRKAVQTSKISKEQTLIKQHKQVWWQEHQRLNEVRCKIESEIKSFLNEENIGNECLSDLMNFEQELSEQGCAYLKNVIDPIQQLRADLKYRQYHISQHPHSHSEFNSVKVLEEVDFVKKQLKAVFESLKLEQQKIENSISDWSVKIADHSSEERSNLLSELPMELEALECPYPDLKSSILNGFRDFTEKYQKKLQVLDQQLEDIYRNYQLSDEDHWLYQAILDQYPGNLCGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAKEQRKILMSNWHKNRRDFIQKAVLTLAEACTAHEMESMLAKDRKKQQEVCADLKAKVLQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQREEKKKKIRQYWAKKEQKWQEMEMRDLQRLEELKKLMAEQSVKDRERVKYRQEVLEKRLMEKKEVALQEALEEEERERRLEALRKQVAIVAQFDPVRMMSDTMASKARMGIGIEEEFILQKPLFTLNTYNEQQVIMKISTIDAKAVIMLRTVEVCVWFTNYFQYLHLNNMHISIIFISI", "length": 601, "header": "tr|A0A287BEZ8-1|A0A287BEZ8_PIG Computationally mapped isoform of Coiled-coil domain containing 148 OS=Sus scrofa OX=9823 GN=CCDC148 PE=4 SV=2 CANONICAL=A0A5G2QNC3-1" }, "locus": { "chromosome": "15", "start_pos": 65346902, "end_pos": 65167158, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063743.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063743.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054700.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054700.2" } ] } }, { "isoform_ac": "A0A5G2QNC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3/entry", "sequence": { "sequence": "MHSASASPGNLVLCMKNEIRSTKYKPVDYQQLQALTEAKRLASASAELKIRKAVQTSKISKEQTLIKQHKQVWWQEHQRLNEVRCKIESEIKSFLNEENIGNECLSDLMNFEQELSEQGCAYLKNVIDPIQQLRADLKYRQYHISQHPHSHSEFNSVKVLEEVDFVKKQLKAVFESLKLEQQKIENSISDWSVKIADHSSEERSNLLSELPMELEALECPYPDLKSSILNGFRDFTEKYQKKLQVLDQQLEDIYRNYQLSDEDHWLYQAILDQYPGNLCGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAKEQRKILMSNWHKNRRDFIQKAVLTLAEACTAHEMESMLAKDRKKQQEVCADLKAKVLQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQREEKKKKIRQYWAKKEQKWQEMEMRDLQRLEELKKLMAEQSVKDRERVKYRQEVLEKRLMEKKEVALQEALEEEERERRLEALRKQVAIVAQFDPVRMMSDTMASKARMGIGIEEEFILQKPLFTLNTYNEQQIISDPRLRFELALREAGLHKTFYAKQLLPKISPQKPPRKDMESTIFKI", "length": 591, "header": "tr|A0A5G2QNC3-1|A0A5G2QNC3_PIG Isoform 1 of Coiled-coil domain containing 148 OS=Sus scrofa OX=9823 GN=CCDC148 PE=4 SV=1 CANONICAL=A0A5G2QNC3-1" }, "locus": { "chromosome": "15", "start_pos": 65430713, "end_pos": 65162513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077581.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077581.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059816.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059816.1" } ] } }, { "isoform_ac": "A0A5G2QVS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVS0/entry", "sequence": { "sequence": "MTNQRNDSSGNLVLCMKNEIRSTKYKPVDYQQLQALTEAKRLASASAELKIRKAVQTSKISKEQTLIKQHKQVWWQEHQRLNEVRCKIESEIKSFLNEENIGNECLSDLMNFEQELSEQGCAYLKNVIDPIQQLRADLKYRQYHISQHPHSHSEFNSVKVLEEVDFVKKQLKAVFESLKLEQQKIENSISDWSVKIADHSSEERSNLLSELPMELEALECPYPDLKSSILNGFRDFTEKYQKKLQVLDQQLEDIYRNYQLSDEDHWLYQAILDQYPGNLCGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAKEQRKILMSNWHKNRRDFIQKAVLTLAEACTAHEMESMLAKDRKKQQEVCADLKAKVLQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQREEKKKKIRQYWAKKEQKWQEMEMRDLQRLEELKKLMAEQSVKDRERVKYRQEVLEKRLMEKKEVALQEALEEEERERRLEALRKQVAIVAQFDPVRMMSDTMASKARMGIGIEEEFILQKPLFTLNTYNEQQIISDPRLRFELALREAGLHKTFYAKQLLPKISPQKPPRKDMESTIFKI", "length": 592, "header": "tr|A0A5G2QVS0-1|A0A5G2QVS0_PIG Computationally mapped isoform of Coiled-coil domain containing 148 OS=Sus scrofa OX=9823 GN=CCDC148 PE=4 SV=2 CANONICAL=A0A5G2QNC3-1" }, "locus": { "chromosome": "15", "start_pos": 65428896, "end_pos": 65162513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091313.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091313.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066028.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066028.2" } ] } }, { "isoform_ac": "A0A8W4FH96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH96/entry", "sequence": { "sequence": "MHSASASPGNLVLCMKNEIRSTKYKPVDYQQLQALTEAKRLASASAELKIRKAVQTSKISKEQTLIKQHKQVWWQEHQRLNEVRCKIESEIKSFLNEENIGNECLSDLMNFEQELSEQGCAYLKNVIDPIQQLRADLKYRQYHISQHPHSHSEFNSVKVLEEVDFVKKQLKAVFESLKLEQQKIENSISDWSVKIADHSSEERSNLLSELPMELEALECPYPDLKSSILNGFRDFTEKYQKKLQVLDQQLEDIYR", "length": 255, "header": "tr|A0A8W4FH96-1|A0A8W4FH96_PIG Computationally mapped isoform of Coiled-coil domain containing 148 OS=Sus scrofa OX=9823 GN=CCDC148 PE=4 SV=1 CANONICAL=A0A5G2QNC3-1" }, "locus": { "chromosome": "15", "start_pos": 65430713, "end_pos": 65324925, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102835.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102835.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078694.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078694.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNC3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNC3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNC9-1", "uniprot_ac": "A0A5G2QNC9", "uniprot_id": "A0A5G2QNC9_PIG", "mass": { "chemical_mass": 86486.0, "monoisotopic_mass": 86486.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QNC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QNC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNC9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049571", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049571", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNC9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMNQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QNC9-1|A0A5G2QNC9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNC9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9/entry", "sequence": { "sequence": "MNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMNQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QNC9-1|A0A5G2QNC9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNC9-1" }, "locus": { "chromosome": "1", "start_pos": 87284190, "end_pos": 87281977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069242.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069242.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066179.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066179.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNC9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNC9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 738, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNC9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNC9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 238, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 531, "end_pos": 533 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QND2-1", "uniprot_ac": "A0A5G2QND2", "uniprot_id": "A0A5G2QND2_PIG", "mass": { "chemical_mass": 102563.0, "monoisotopic_mass": 102563.0 }, "refseq": {}, "gene_names": [ { "name": "NLRP4", "type": "recommended", "evidence": [ { "id": "A0A5G2QND2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ] } ], "protein_names": [ { "name": "NLR family pyrin domain containing 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QND2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NLRP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2", "locus": { "chromosome": "6", "start_pos": 60272047, "end_pos": 60233255, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000045118", "url": "https://www.ensembl.org/id/ENSSSCG00000045118" } ] } } ], "crossref": [ { "id": "A0A5G2QND2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045118", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045118", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08320", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08320", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3134975", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3134975", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3270619", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3270619", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QND2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSFFPDFGLMWYLEELKRDEFKKFKDLLRKEPLELGLKPLPWGEVKRATRENLAKLLTVNFEEEQAWNVTLSIFHKIGRKDLCEKAKKEITGHAKTYQAHIKEKFSNLWFQEARTRIHEYLDQENARKEQESLQRLFAPKRTGKWTRTVILLGPQGVGKTTYLVKLMLAWAEGNLFRERFSYVFYFCCQELKQLTKTSLAALISRDWSDSLAPLQEITSQPERLLFIIDSFEELKHDLNEPESDLCSDWTEKRPVQVVLSSLLRKKIFPESSLLIAAKPVYPRKLELSLDGPEIRELLGFSETDRKLYFYTIFRDRNRAMEAFRLVRENKQLFCMCQIPVLCWAVCTCLKQEMDKGRDLAPTCQHTTSIFTSFVFGLFTPKGAGCPDQQSQRLLKGLCFLAAEGMWTDTFVFSEEDLERNGLCDSDIPALLGLKVLQKCRAFEKSYAFIHMCIQEFCAAMFYLLSRHAQHPNPAVGSLEALLLTFLKRVNVYWIYLGCFLFGLLREEEQKKLDAFFGIHLAQEIQQKCHQFLQRIAENEHPWKQVDFLALCYCLYEMRNEDFVQWAMDFFQAVKLSIIDDADLVVSAYCLKHCSGLRTLWVSALHDFEEEDEEGSTAIHWNQVCSALITNENLREFRMSDSTFLYCCSLNNVSFPRGSRLFFEVLTHSPHLKCLNLSGTKLSRNAVKLLFSVCSRLSDSDCSAFSQILRSSRKLLNLNVSRNYLVPGAPLLCKVLLNTGVVPLLFSCRILKCLITAAGCRELASVLPVNPNLRNLQLGYNDIEDTGVKLLCEGLTHPSCRLEILGLGECKLTSACCQDISSVLTSSKTLRILNLGGNALDLSGMVVLCEALRHPECTLQVLSLKKEELDEETQRFLMDEEKKNPKWPIIGE", "length": 893, "header": "tr|A0A5G2QND2-1|A0A5G2QND2_PIG Isoform 1 of NLR family pyrin domain containing 4 OS=Sus scrofa OX=9823 GN=NLRP4 PE=3 SV=2 CANONICAL=A0A5G2QND2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QND2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2/entry", "sequence": { "sequence": "MASSFFPDFGLMWYLEELKRDEFKKFKDLLRKEPLELGLKPLPWGEVKRATRENLAKLLTVNFEEEQAWNVTLSIFHKIGRKDLCEKAKKEITGHAKTYQAHIKEKFSNLWFQEARTRIHEYLDQENARKEQESLQRLFAPKRTGKWTRTVILLGPQGVGKTTYLVKLMLAWAEGNLFRERFSYVFYFCCQELKQLTKTSLAALISRDWSDSLAPLQEITSQPERLLFIIDSFEELKHDLNEPESDLCSDWTEKRPVQVVLSSLLRKKIFPESSLLIAAKPVYPRKLELSLDGPEIRELLGFSETDRKLYFYTIFRDRNRAMEAFRLVRENKQLFCMCQIPVLCWAVCTCLKQEMDKGRDLAPTCQHTTSIFTSFVFGLFTPKGAGCPDQQSQRLLKGLCFLAAEGMWTDTFVFSEEDLERNGLCDSDIPALLGLKVLQKCRAFEKSYAFIHMCIQEFCAAMFYLLSRHAQHPNPAVGSLEALLLTFLKRVNVYWIYLGCFLFGLLREEEQKKLDAFFGIHLAQEIQQKCHQFLQRIAENEHPWKQVDFLALCYCLYEMRNEDFVQWAMDFFQAVKLSIIDDADLVVSAYCLKHCSGLRTLWVSALHDFEEEDEEGSTAIHWNQVCSALITNENLREFRMSDSTFLYCCSLNNVSFPRGSRLFFEVLTHSPHLKCLNLSGTKLSRNAVKLLFSVCSRLSDSDCSAFSQILRSSRKLLNLNVSRNYLVPGAPLLCKVLLNTGVVPLLFSCRILKCLITAAGCRELASVLPVNPNLRNLQLGYNDIEDTGVKLLCEGLTHPSCRLEILGLGECKLTSACCQDISSVLTSSKTLRILNLGGNALDLSGMVVLCEALRHPECTLQVLSLKKEELDEETQRFLMDEEKKNPKWPIIGE", "length": 893, "header": "tr|A0A5G2QND2-1|A0A5G2QND2_PIG Isoform 1 of NLR family pyrin domain containing 4 OS=Sus scrofa OX=9823 GN=NLRP4 PE=3 SV=2 CANONICAL=A0A5G2QND2-1" }, "locus": { "chromosome": "6", "start_pos": 60272044, "end_pos": 60233255, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086538.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086538.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065559.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065559.2" } ] } }, { "isoform_ac": "A0A5G2QX41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX41/entry", "sequence": { "sequence": "MASSFFPDFGLMWYLEELKRDEFKKFKDLLRKEPLELGLKPLPWGEVKRATRENLAKLLTVNFEEEQAWNVTLSIFHKIGRKDLCEKAKKEITGEGVWYLDQENARKEQESLQRLFAPKRTGKWTRTVILLGPQGVGKTTYLVKLMLAWAEGNLFRERFSYVFYFCCQELKQLTKTSLAALISRDWSDSLAPLQEITSQPERLLFIIDSFEELKHDLNEPESDLCSDWTEKRPVQVVLSSLLRKKIFPESSLLIAAKPVYPRKLELSLDGPEIRELLGFSETDRKLYFYTIFRDRNRAMEAFRLVRENKQLFCMCQIPVLCWAVCTCLKQEMDKGRDLAPTCQHTTSIFTSFVFGLFTPKGAGCPDQQSQRLLKGLCFLAAEGMWTDTFVFSEEDLERNGLCDSDIPALLGLKVLQKCRAFEKSYAFIHMCIQEFCAAMFYLLSRHAQHPNPAVGSLEALLLTFLKRVNVYWIYLGCFLFGLLREEEQKKLDAFFGIHLAQEIQQKCHQFLQRIAENEHPWKQVDFLALCYCLYEMRNEDFVQWAMDFFQAVKLSIIDDADLVVSAYCLKHCSGLRTLWVSALHDFEEEDEEGSTAIHWNQVCSALITNENLREFRMSDSSLHGFTFVTLCDQLKHPRCRLQKLHLNNVSFPRGSRLFFEVLTHSPHLKCLNLSGTKLSRNAVKLLCEALNNPTCNIEELLLARCWLSVEDCSAFSQILRSSRKLLNLNVSRNYLVPGAPLLCKVLCKPDCALRDHGGRVVPLLFSCRILKCLITAAGCRELASVLPVNPNLRNLQLGYNDIEDTGVKLLCEGLTHPSCRLEILGLGECKLTSACCQDISSVLTSSKTLRILNLGGNALDLSGMVVLCEALRHPECTLQVLR", "length": 882, "header": "tr|A0A5G2QX41-1|A0A5G2QX41_PIG Computationally mapped isoform of NLR family pyrin domain containing 4 OS=Sus scrofa OX=9823 GN=NLRP4 PE=3 SV=2 CANONICAL=A0A5G2QND2-1" }, "locus": { "chromosome": "6", "start_pos": 60267797, "end_pos": 60233255, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089991.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089991.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062755.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062755.2" } ] } }, { "isoform_ac": "A0A5G2R1L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L9/entry", "sequence": { "sequence": "MASSFFPDFGLMWYLEELKRDEFKKFKDLLRKEPLELGLKPLPWGEVKRATRENLAKLLTVNFEEEQAWNVTLSIFHKIGRKDLCEKAKKEITGHAKTYQAHIKEKFSNLWFQEARTRIHEYLDQENARKEQESLQRLFAPKRTGKWTRTVILLGPQGVGKTTYLVKLMLAWAEGNLFRERFSYVFYFCCQELKQLTKTSLAALISRDWSDSLAPLQEITSQPERLLFIIDSFEELKHDLNEPESDLCSDWTEKRPVQVVLSSLLRKKIFPESSLLIAAKPVYPRKLELSLDGPEIRELLGFSETDRKLYFYTIFRDRNRAMEAFRLVRENKQLFCMCQIPVLCWAVCTCLKQEMDKGRDLAPTCQHTTSIFTSFVFGLFTPKGAGCPDQQSQRLLKGLCFLAAEGMWTDTFVFSEEDLERNGLCDSDIPALLGLKVLQKCRAFEKSYAFIHMCIQEFCAAMFYLLSRHAQHPNPAVGSLEALLLTFLKRVNVYWIYLGCFLFGLLREEEQKKLDAFFGIHLAQEIQQKCHQFLQRIAENEHPWKQVDFLALCYCLYEMRNEDFVQWAMDFFQAVKLSIIDDADLVVSAYCLKHCSGLRTLWSQNTTEGRCSGCVLRFLNNVSFPRGSRLFFEVLTHSPHLKCLNLSGTKLSRNAVKLLCEALNNPTLSDSVAKRDGHLFENKLASVLPVNPNLRNLQLGYNDIEDTGVKLLCEGLTHPSCRLEILGLGECKLTSACCQDISSVLTSSKTLRILNLGGNALDLSGMVVLCEALRHPECTLQVLSLKKEELDEETQRFLMDEEKKNPKWPIIGE", "length": 813, "header": "tr|A0A5G2R1L9-1|A0A5G2R1L9_PIG Computationally mapped isoform of NLR family pyrin domain containing 4 OS=Sus scrofa OX=9823 GN=NLRP4 PE=3 SV=2 CANONICAL=A0A5G2QND2-1" }, "locus": { "chromosome": "6", "start_pos": 60272044, "end_pos": 60233255, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077230.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077230.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070245.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070245.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3134975", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3134975", "resource": "Reactome", "description": "Regulation of innate immune responses to cytosolic DNA" }, { "id": "R-SSC-3270619", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3270619", "resource": "Reactome", "description": "IRF3-mediated induction of type I IFN" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "pmid": "" }, { "name": "negative regulation of innate immune response", "id": "GO:0045824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045824", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" }, { "start_pos": 677, "end_pos": 679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 720, "end_pos": 722, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QND2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 893, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QND2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QND2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" }, { "id": "PS50837", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NACHT", "eco_id": "ECO_0000259", "start_pos": 149, "end_pos": 353, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QND2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND2" }, { "id": "PS50824", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50824" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pyrin", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 94, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 653, "end_pos": 655 }, { "start_pos": 677, "end_pos": 679 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 720, "end_pos": 722 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QND5-1", "uniprot_ac": "A0A5G2QND5", "uniprot_id": "A0A5G2QND5_PIG", "mass": { "chemical_mass": 14766.0, "monoisotopic_mass": 14766.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QND5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QND5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND5", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QND5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QND5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRSGIAGSNGSSIFSFLRNLHTVFHSGCTNLQFHRQCTRVPFSPHPLQHLLFVDFLMVAILASVSGYLRVVLICISLIMSDVEHLFMCFLAIHMSSLENCLFRSSAHFFDRVVCFFGMELKKVFINFGD", "length": 130, "header": "tr|A0A5G2QND5-1|A0A5G2QND5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QND5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QND5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5/entry", "sequence": { "sequence": "MLRSGIAGSNGSSIFSFLRNLHTVFHSGCTNLQFHRQCTRVPFSPHPLQHLLFVDFLMVAILASVSGYLRVVLICISLIMSDVEHLFMCFLAIHMSSLENCLFRSSAHFFDRVVCFFGMELKKVFINFGD", "length": 130, "header": "tr|A0A5G2QND5-1|A0A5G2QND5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QND5-1" }, "locus": { "chromosome": "17", "start_pos": 15332150, "end_pos": 15331761, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087713.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087713.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059831.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059831.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QND5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 130, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QND5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QND7-1", "uniprot_ac": "A0A5G2QND7", "uniprot_id": "A0A5G2QND7_PIG", "mass": { "chemical_mass": 22693.0, "monoisotopic_mass": 22693.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QND7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QND7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043354", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043354", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QND7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTEQKREKRLKTNEESLRELWDNVKCINIHIIGVPEGEEREKGTEKIFQEIIAENSPNMGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQVTYKATPIRLSADFSAETLQTRREWHDILHVMKGKNLQPKLLYPARLSFRFGEEIKTFTDKQKLREFRNTKPALQQILKELL", "length": 192, "header": "tr|A0A5G2QND7-1|A0A5G2QND7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QND7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QND7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7/entry", "sequence": { "sequence": "MGTEQKREKRLKTNEESLRELWDNVKCINIHIIGVPEGEEREKGTEKIFQEIIAENSPNMGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQVTYKATPIRLSADFSAETLQTRREWHDILHVMKGKNLQPKLLYPARLSFRFGEEIKTFTDKQKLREFRNTKPALQQILKELL", "length": 192, "header": "tr|A0A5G2QND7-1|A0A5G2QND7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QND7-1" }, "locus": { "chromosome": "1", "start_pos": 18693525, "end_pos": 18692950, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076724.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076724.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066413.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066413.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QND7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QND7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 192, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QND7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QND7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QND7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 123, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QND7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QND7" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 190, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNF9-1", "uniprot_ac": "A0A5G2QNF9", "uniprot_id": "A0A5G2QNF9_PIG", "mass": { "chemical_mass": 11873.0, "monoisotopic_mass": 11873.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "TOX high mobility group box family member 4", "type": "recommended", "evidence": [ { "id": "A0A5G2QNF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNF9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45781", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45781", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45781:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45781:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFPGGNDNYLTITGPSHPFLSGAEDLDHSIGAQHSANPPVAIDVPVTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGAMTEPPALSPSIVVNSTLSSYVTNQASLELGVSPVLPS", "length": 116, "header": "tr|A0A5G2QNF9-1|A0A5G2QNF9_PIG Isoform 1 of TOX high mobility group box family member 4 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNF9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9/entry", "sequence": { "sequence": "MEFPGGNDNYLTITGPSHPFLSGAEDLDHSIGAQHSANPPVAIDVPVTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGAMTEPPALSPSIVVNSTLSSYVTNQASLELGVSPVLPS", "length": 116, "header": "tr|A0A5G2QNF9-1|A0A5G2QNF9_PIG Isoform 1 of TOX high mobility group box family member 4 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNF9-1" }, "locus": { "chromosome": "13", "start_pos": 193263242, "end_pos": 193262385, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084724.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084724.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066214.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066214.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 116, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNF9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNG2-1", "uniprot_ac": "A0A5G2QNG2", "uniprot_id": "A0A5G2QNG2_PIG", "mass": { "chemical_mass": 122568.0, "monoisotopic_mass": 122568.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QNG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QNG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEIGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNGEKLKAFSLKSGTRQGCSLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRITKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQRSEWEKIVSNDATDKDLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINNSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1042, "header": "tr|A0A5G2QNG2-1|A0A5G2QNG2_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNG2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2/entry", "sequence": { "sequence": "MKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEIGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNGEKLKAFSLKSGTRQGCSLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRITKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQRSEWEKIVSNDATDKDLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINNSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1042, "header": "tr|A0A5G2QNG2-1|A0A5G2QNG2_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNG2-1" }, "locus": { "chromosome": "13", "start_pos": 56253862, "end_pos": 56250737, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072659.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072659.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063618.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063618.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 835, "end_pos": 837, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" }, { "start_pos": 892, "end_pos": 894, "annotation": "n_glycosylation_sequon" }, { "start_pos": 893, "end_pos": 895, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNG2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1042, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNG2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNG2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG2" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 542, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 835, "end_pos": 837 }, { "start_pos": 84, "end_pos": 86 }, { "start_pos": 892, "end_pos": 894 }, { "start_pos": 893, "end_pos": 895 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPV2-1", "uniprot_ac": "A0A5G2QPV2", "uniprot_id": "A0A5G2QPV2_PIG", "mass": { "chemical_mass": 248260.0, "monoisotopic_mass": 248260.0 }, "refseq": {}, "gene_names": [ { "name": "SPEF2", "type": "recommended", "evidence": [ { "id": "A0A5G2QPV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ] } ], "protein_names": [ { "name": "Sperm flagellar 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QPV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPEF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2", "locus": { "chromosome": "16", "start_pos": 21265592, "end_pos": 21088386, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016831", "url": "https://www.ensembl.org/id/ENSSSCG00000016831" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016831", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016831", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IMETKQQ", "url": "https://omabrowser.org/oma/group/IMETKQQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14919", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14919", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14919:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14919:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06294", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06294", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22946", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22946", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24082", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24082", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC1", "url": "https://www.uniprot.org/uniprotkb/F1SNC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEILCHWLNQELKVSQTVSPKSFAKAFSSGYLIGEVLHKYELQDDFAEFSEKRISSAKLNNFSRLEPTLHLLGVQFDQNVAHDIITEKPGVAMKLLYQLYIALQRKKKSGLTGVELQTMQPLTNTKLQNMKSEAFRDRLRNLIPRQTDVSLMRVSHRFQEKYKYKDEDLVHTHLKKLENFQKLQEEQRSFNIEKQRLSRRRQNEIMAQIQAAIIQIPKPASNRTLKALDAQKMMKKKKEAEDVANEIKKFEALIKKDLQAKESASKTSLDAAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLVSRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQYEERRLKDFQDALDREAALAKQAKIDYEEQALREKEMHEQIAAERVQARYKKHYSICAEILDQILDLSTKVADYRMLTNNLIPYKLMHDWKELFFNGMPIYEQASLKHLSAKPSTEQLIELEKRDLLDNNDYEEYKNMVGEWALPEEMVDNIPPSDNRILGHVIHRLIEHSLPPQVESTAPELPSFAIKGCLLGKTFSGKTTALKFLQKYFPIEVLSIDTLVQEAIQAFHNNEKVSGALQLQKAAEEKASPVRQESGDRSQNLHNVLSAEGTPETEDETRLSTKKTPKAEEVIASASLSELTTRAQLGAKSEKLLKKGKSISDTLLVSIVVNAINQIPIYKGWILDGFPMTLNQAKLLEEALTGFNRNLIELEGKKSQISTLAVDPTASREVPLPPSAFDFVMLLDISDNTSLNRMNDIMAEAFLSETPHENINQRVAAENQDMDEDQNLRDQIQHRIIGFWDHWPSLEQWFTEPENILIKMNAEVDEQSLCQKVKEMFMAEIMKKENKAKKKSEEKEAEKKEEFSLPEATPPTPPAPPPSEPEKEKEAHPPHERSKTPTAKGKPASEPPHGNRESPQEGKGKKSETSPKRKGSPRGKSPGGKAPVKKSPADSTDVSPVPAVPPPSKPGSEEWVFVNEPIPEEIPLFLVPYWKLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFVSQWQADFNSLPDDLWEDEETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINESWLQDSTGIAMNHFFSLMQAELNRFQDTKRLLQDYYRGMECKIPTDDTKRLTRVPLVQLDNKDTLEFQLRIPLVPRRSISPESALSKPKIKALLKGNIDYSLENVELNFEADEKVVMDTWQQASLAVSHMVAAEIHQRLMEEEKENQPADTKEKPPQTAANKKVKKEPPKKKREDKKGKGKSPPMAESAPVITVEEIAEMERKNELRLRIKEEHLAALQFEERATQFRLELIKTKALAFLEDLVTKADVYKLMEKWLGERYLNEMASVEKLTEVARYHIETSTKIQNELYLDQEDFFINGNIKVFPDPPPPVRPPPVEKEENGTLTIEQLDNLRDQFLDIAPKDRDPPDGGRRVTKKQKRPRTLDHYLPKRNNQFLKIWLKKYPWLVYDEILNIMFCGLCRKHGVRSKGNQVSFFYGTDNFRAEFLNAHHLSEAHAKASLTEATSGSPGSRAPTELMVRAMSKVTLGRVENLFRSCHAIAKTGRPLEDFIWMCTLDDMKGVDLGPVFRTNTSARTFTYFIAEVERRTLREKLQTSKFFSIIRDGMTDSSVEEAELVYVQFARAGQVHCQIVGVQTVEEKDPPGIKKAIEKTLERNLQLRLANQDWAKKLVGFGSDGAPGPEGEKSRRVALLLRDLQPRVLAVYCFAHHLELSYKAVFQSVPLYNDVTRLLHSLHRFHHNSPVPTSSLITAFKSLPLRPGTPSPVDGRRWLRGLQAALQNFLKGYPAIVQHLLSTDEGGSDTSHQKAKELLDVLLQADIVKFVHFLVDVINVLSLLSHVIQNRNSSIADIFATLESTLEMLRIYQTRPGPKERRVESVTHFHGNCLGGRGNISDVRNMVLTHLIERLQGCFRDASQDVVKATTIGSFKLWPAKIKQEFGEKEVSILTAHYEPILEAAQVKIDEVDTEWSMLKLEIYARFQNIRKLTWDFVNSVYLHKYPNILTLVDLVLSLPASSAEAERGFSQMERTNSQVHAKVKADDMTDLLIIQLNSPDIKNFDPRKAIHLWNTRTPSSPGDTRPNSDCSSRSESPDESDY", "length": 2164, "header": "tr|A0A5G2QPV2-1|A0A5G2QPV2_PIG Isoform 1 of Sperm flagellar 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=4 SV=1 CANONICAL=A0A5G2QPV2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG3/entry", "sequence": { "sequence": "MSEILCHWLNQELKVSQTVSPKSFAKAFSSGYLIGEVLHKYELQDDFAEFSEKRISSAKLNNFSRLEPTLHLLGVQFDQNVAHDIITEKPGVAMKLLYQLYIALQRKKKSGLTGVELQTMQPLTNTKLQNMKSEAFRDRLRNLIPRQTDVSLMRVSHRFQEKYKYKDEDLVHTHLKKLENFQKLQEEQRSFNIEKQRLSRRRQNEIMAQIQAAIIQIPKPASNRTLKALDAQKMMKKKKEAEDVANEIKKFEALIKKDLQAKESASKTSLDAAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLVSRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQYEERRLKDFQDALDREAALAKQAKIDYEEQALREKEMHEQIAAERVQARYKKHYSICAEILDQILDLSTKVADYRMLTNNLIPYKLMHDWKELFFNGMPIYEQASLKHLSAKPSTEQLIELEKRDLLDNNDYEEYKVYMK", "length": 512, "header": "tr|A0A5G2QNG3-1|A0A5G2QPV2_PIG Computationally mapped isoform of Sperm flagellar 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=4 SV=1 CANONICAL=A0A5G2QPV2-1" }, "locus": { "chromosome": "16", "start_pos": 21136339, "end_pos": 21088463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078034.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078034.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066219.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066219.1" } ] } }, { "isoform_ac": "A0A5G2QPV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2/entry", "sequence": { "sequence": "MSEILCHWLNQELKVSQTVSPKSFAKAFSSGYLIGEVLHKYELQDDFAEFSEKRISSAKLNNFSRLEPTLHLLGVQFDQNVAHDIITEKPGVAMKLLYQLYIALQRKKKSGLTGVELQTMQPLTNTKLQNMKSEAFRDRLRNLIPRQTDVSLMRVSHRFQEKYKYKDEDLVHTHLKKLENFQKLQEEQRSFNIEKQRLSRRRQNEIMAQIQAAIIQIPKPASNRTLKALDAQKMMKKKKEAEDVANEIKKFEALIKKDLQAKESASKTSLDAAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLVSRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQYEERRLKDFQDALDREAALAKQAKIDYEEQALREKEMHEQIAAERVQARYKKHYSICAEILDQILDLSTKVADYRMLTNNLIPYKLMHDWKELFFNGMPIYEQASLKHLSAKPSTEQLIELEKRDLLDNNDYEEYKNMVGEWALPEEMVDNIPPSDNRILGHVIHRLIEHSLPPQVESTAPELPSFAIKGCLLGKTFSGKTTALKFLQKYFPIEVLSIDTLVQEAIQAFHNNEKVSGALQLQKAAEEKASPVRQESGDRSQNLHNVLSAEGTPETEDETRLSTKKTPKAEEVIASASLSELTTRAQLGAKSEKLLKKGKSISDTLLVSIVVNAINQIPIYKGWILDGFPMTLNQAKLLEEALTGFNRNLIELEGKKSQISTLAVDPTASREVPLPPSAFDFVMLLDISDNTSLNRMNDIMAEAFLSETPHENINQRVAAENQDMDEDQNLRDQIQHRIIGFWDHWPSLEQWFTEPENILIKMNAEVDEQSLCQKVKEMFMAEIMKKENKAKKKSEEKEAEKKEEFSLPEATPPTPPAPPPSEPEKEKEAHPPHERSKTPTAKGKPASEPPHGNRESPQEGKGKKSETSPKRKGSPRGKSPGGKAPVKKSPADSTDVSPVPAVPPPSKPGSEEWVFVNEPIPEEIPLFLVPYWKLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFVSQWQADFNSLPDDLWEDEETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINESWLQDSTGIAMNHFFSLMQAELNRFQDTKRLLQDYYRGMECKIPTDDTKRLTRVPLVQLDNKDTLEFQLRIPLVPRRSISPESALSKPKIKALLKGNIDYSLENVELNFEADEKVVMDTWQQASLAVSHMVAAEIHQRLMEEEKENQPADTKEKPPQTAANKKVKKEPPKKKREDKKGKGKSPPMAESAPVITVEEIAEMERKNELRLRIKEEHLAALQFEERATQFRLELIKTKALAFLEDLVTKADVYKLMEKWLGERYLNEMASVEKLTEVARYHIETSTKIQNELYLDQEDFFINGNIKVFPDPPPPVRPPPVEKEENGTLTIEQLDNLRDQFLDIAPKDRDPPDGGRRVTKKQKRPRTLDHYLPKRNNQFLKIWLKKYPWLVYDEILNIMFCGLCRKHGVRSKGNQVSFFYGTDNFRAEFLNAHHLSEAHAKASLTEATSGSPGSRAPTELMVRAMSKVTLGRVENLFRSCHAIAKTGRPLEDFIWMCTLDDMKGVDLGPVFRTNTSARTFTYFIAEVERRTLREKLQTSKFFSIIRDGMTDSSVEEAELVYVQFARAGQVHCQIVGVQTVEEKDPPGIKKAIEKTLERNLQLRLANQDWAKKLVGFGSDGAPGPEGEKSRRVALLLRDLQPRVLAVYCFAHHLELSYKAVFQSVPLYNDVTRLLHSLHRFHHNSPVPTSSLITAFKSLPLRPGTPSPVDGRRWLRGLQAALQNFLKGYPAIVQHLLSTDEGGSDTSHQKAKELLDVLLQADIVKFVHFLVDVINVLSLLSHVIQNRNSSIADIFATLESTLEMLRIYQTRPGPKERRVESVTHFHGNCLGGRGNISDVRNMVLTHLIERLQGCFRDASQDVVKATTIGSFKLWPAKIKQEFGEKEVSILTAHYEPILEAAQVKIDEVDTEWSMLKLEIYARFQNIRKLTWDFVNSVYLHKYPNILTLVDLVLSLPASSAEAERGFSQMERTNSQVHAKVKADDMTDLLIIQLNSPDIKNFDPRKAIHLWNTRTPSSPGDTRPNSDCSSRSESPDESDY", "length": 2164, "header": "tr|A0A5G2QPV2-1|A0A5G2QPV2_PIG Isoform 1 of Sperm flagellar 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=4 SV=1 CANONICAL=A0A5G2QPV2-1" }, "locus": { "chromosome": "16", "start_pos": 21239556, "end_pos": 21088463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082925.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082925.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066091.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066091.1" } ] } }, { "isoform_ac": "A0A5G2RJD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJD9/entry", "sequence": { "sequence": "MSEILCHWLNQELKVSQTVSPKSFAKAFSSGYLIGEVLHKYELQDDFAEFSEKRISSAKLNNFSRLEPTLHLLGVQFDQNVAHDIITEKPGVAMKLLYQLYIALQRKKKSGLTGVELQTMQPLTNTKLQNMKSEAFRDRLRNLIPRQTDVSLMRVSHRFQEKYKYKDEDLVHTHLKKLENFQKLQEEQRSFNIEKQRLSRRRQNEIMAQIQAAIIQIPKPASNRTLKALDAQKMMKKKKEAEDVANEIKKFEALIKKDLQAKESASKTSLDAAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLVSRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQYEERRLKDFQDALDREAALAKQAKIDYEEQALREKEMHEQIAAERVQARYKKHYSICAEILDQILDLSTKVADYRMLTNNLIPYKLMHDWKELFFNGMPIYEQASLKHLSAKPSTEQLIELEKRDLLDNNDYEEYKNMVGEWALPEEMVDNIPPSDNRILGHVIHRLIEHSLPPQVESTAPELPSFAIKGCLLGKTFSGKTTALKFLQKYFPIEVLSIDTLVQEAIQAFHNNEKVSGALQLQKAAEEKASPVRQESGDRSQNLHNVLSAEGTPETEGTKKTPKAEEVIASASLSELTTRAQLGAKSEKLLKKGKSISDTLLVSIVVNAINQIPIYKGWILDGFPMTLNQAKLLEEALTGFNRNLIELEGKKSQISTLAVDPTASREVPLPPSAFDFVMLLDISDNTSLNRMNDIMAEAFLSETPHENINQRVAAENQDMDEDQNLRDQIQHRIIGFWDHWPSLEQWFTEPENILIKMNAEVDEQSLCQKVKEMFMAEIMKKENKAKKKSEEKEAEKKEEFSLPEATPPTPPAPPPSEPEKEKEAHPPHERSKTPTAKGKPASEPPHGNRESPQEGKGKKSETSPKRKGSPRGKSPGGKAPVKKSPADSTDVSPVPAVPPPSKPGSEEWVFVNEPIPEEIPLFLVPYWKLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFVSQWQADFNSLPDDLWEDEETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINESWLQDSTGIAMNHFFSLMQAELNRFQDTKRLLQDYYRGMECKIPTDDTKRLTRVPLVQLDNKDTLEFQLRIPLVPRRSISPESALSKPKIKALLKGNIDYSLENVELNFEADEKVVMDTWQQASLAVSHMVAAEIHQRLMEEEKENQPADTKEKPPQTAANKKVKKEPPKKKREDKKGKGKSPPMAESAPVITVEEIAEMERKNELRLRIKEEHLAALQFEERATQFRLELIKTKALAFLEDLVTKADVYKLMEKWLGERYLNEMASVEKLTEVARYHIETSTKIQNELYLDQEDFFINGNIKVFPDPPPPVRPPPVEKEENGTLTIEQLDNLRDQFLDIAPKGVIGNKAFADILLDLVTLNLGTNNFPSSWMHLTQPELQELASLLVINSELVDWRKFLLVAALPWPIPLEEELLETLQRFKAVDEEQLGTVTFEQYLQAGLWFTGDKDIKIPANPLEPLPFNRQEHLIEFFFRLFADHDKDPPRLDYTEMLLYFACHPDGMEGVYRALSVATGSHVFQPIETPVLVAEKTSSFIDMSPTEEYPEPEDNFISEERELQEEGEEKEEDIPENANTEMISMETLLKVFRGGNEPQDTNRFASYPKTESIYSENFIKVFQDLGSKNLEPIEVAVLLKHPFIQDLIRSYPDYKIPAYIIWVVLAVTVLMKAWMPVSSEKPFSWGN", "length": 1807, "header": "tr|A0A5G2RJD9-1|A0A5G2RJD9_PIG Computationally mapped isoform of Sperm flagellar 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=4 SV=1 CANONICAL=A0A5G2QPV2-1" }, "locus": { "chromosome": "16", "start_pos": 21258297, "end_pos": 21088463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072512.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072512.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071949.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071949.1" } ] } }, { "isoform_ac": "F1SNC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC1/entry", "sequence": { "sequence": "MSEILCHWLNQELKVSQTVSPKSFAKAFSSGYLIGEVLHKYELQDDFAEFSEKRISSAKLNNFSRLEPTLHLLGVQFDQNVAHDIITEKPGVAMKLLYQLYIALQRKKKSGLTGVELQTMQPLTNTKLQNMKSEAFRDRLRNLIPRQTDVSLMRVSHRFQEKYKYKDEDLVHTHLKKLENFQKLQEEQRSFNIEKQRLSRRRQNEIMAQIQAAIIQIPKPASNRTLKALDAQKMMKKKKEAEDVANEIKKFEALIKKDLQAKESASKTSLDAAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLVSRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQYEERRLKDFQDALDREAALAKQAKIDYEEQALREKEMHEQIAAERVQARYKKHYSICAEILDQILDLSTKVADYRMLTNNLIPYKLMHDWKELFFNGMPIYEQASLKHLSAKPSTEQLIELEKRDLLDNNDYEEYKNMVGEWALPEEMVDNIPPSDNRILGHVIHRLIEHSLPPQVESTAPELPSFAIKGCLLGKTFSGKTTALKFLQKYFPIEVLSIDTLVQEAIQAFHNNEKVSGALQLQKAAEEKASPVRQESGDRSQNLHNVLSAEGTPETEDETRLSTKKTPKAEEVIASASLSELTTRAQLGAKSEKLLKKGKSISDTLLVSIVVNAINQIPIYKGWILDGFPMTLNQAKLLEEALTGFNRNLIELEGKKSQISTLAVDPTASREVPLPPSAFDFVMLLDISDNTSLNRMNDIMAEAFLSETPHENINQRVAAENQDMDEDQNLRDQIQHRIIGFWDHWPSLEQWFTEPENILIKMNAEVDEQSLCQKVKEMFMAEIMKKENKAKKKSEEKEAEKKEEFSLPEATPPTPPAPPPSEPEKEKEAHPPHERSKTPTAKGKPASEPPHGNRESPQEGKGKKSETSPKRKGSPRGKSPGGKAPVKKSPADSTDVSPVPAVPPPSKPGSEEWVFVNEPIPEEIPLFLVPYWKLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFVSQWQADFNSLPDDLWEDEETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINESWLQDSTGIAMNHFFSLMQAELNRFQDTKRLLQDYYRGMECKIPTDDTKRLTRVPLVQLDNKDTLEFQLRIPLVPRRSISPESALSKPKIKALLKGNIDYSLENVELNFEADEKVVMDTWQQASLAVSHMVAAEIHQRLMEEEKENQPADTKEKPPQTAANKKVKKEPPKKKREDKKGKGKSPPMAESAPVITVEEIAEMERKNELRLRIKEEHLAALQFEERATQFRLELIKTKALAFLEDLVTKADVYKLMEKWLGERYLNEMASVEKLTEVARYHIETSTKIQNELYLDQEDFFINGNIKVFPDPPPPVRPPPVEKEENGTLTIEQLDNLRDQFLDIAPKGVIGNKAFADILLDLVTLNLGTNNFPSSWMHLTQPELQELASLLVINSELVDWRKFLLVAALPWPIPLEEELLETLQRFKAVDEEQLGTVTFEQYLQAGLWFTGDKDIKIPANPLEPLPFNRQEHLIEFFFRLFADHDKDPPRLDYTEMLLYFACHPDGMEGVYRALSVATGSHVFQPIETPVLVAEKTSSFIDMSPTEEYPEPEDNFISEERELQEEGEEKEEDIPENANTEMISMETLLKVFRGGNEPQDTNRFASYPKTESIYSENFIKVFQDLGSKNLEPIEVAVLLKHPFIQDLIRSYPDYKIPDIKVVLQRSEHIQGSDGESSPSRLTEEKK", "length": 1811, "header": "tr|F1SNC1-1|F1SNC1_PIG Computationally mapped isoform of Sperm flagellar 2 OS=Sus scrofa OX=9823 GN=SPEF2 PE=4 SV=3 CANONICAL=A0A5G2QPV2-1" }, "locus": { "chromosome": "16", "start_pos": 21264588, "end_pos": 21088463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018326.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018326.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017830.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017830.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 759, "start_aa": "Thr", "end_pos": 759, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr759", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 906, "start_aa": "Thr", "end_pos": 906, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr906", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YIE9-1", "protein_name": "Sperm flagellar 2", "gene_name": "SPEF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSEILCEWLNEEVKLSRSVVPGSLSEEFSTGYLFGELLHKYGLQDDFNQFSQSRAANAKLNNFSLLEPTLQLLGVQFNENVAHDIMIGKRGAATKLLYELYIALEKKRKTKLTGVAMEAMRPAAPARFKSIGSVSFRERLKSLTSRQADLELWQVSDHFEMKSKAIEDKIARIHISEQQKSLKPQEEQRAQDSEKHRIGRRQNEIMARIQAAVIQVPKPSLSHTLKSNEAKKILKKKREAEDTYKEINKFEKSLVGNAFEVHSQVTDSEIQESLQTQKLQETTLETTAQAATELLPTYSDDDYVRKIQKYLEEDMFAREQREKRRRKMLMEQLIAHEAEEEIYQEEQLVYRLMRQSQQERRIAVQLMHVRHEKEVLKQNRIFREKQYEERRLKEFQEALDREAALAKQEKIDYEEQSVKERERHEKIAIERAQARYKKHYSACWEVIDQIVDLSTKIGEYRVLTNNKVPLKLICDWKELFFNGNSIYEKASIKTLPSEPSPEQLLELNKMDLLDEKDYDEYKNMTGEWCPTEENRENKSLNNNILGHVLHRLMEIFYPSKPRCTLPVLPSFPIKGCILGKVFSGKTTCVKFLEKVCDIQVLSVDTLVQEAIQAFLNNEMKTEHSLISQEAESSAKQYKVQRNFSETSMKYLTDTFTNGTKGNHPFKKHPSDQATVSDHKENDISKLSVRAQLGAASQKLLKKGKSIPDELLVDILLEAIKQTPPEKGWILDGFPTTINQARLFEKACTGIDPDETEAKYVNCGKLSLVTNPRTPNKPPVTLPAFDVSILLDISDTTVLKRVASLMSDKSKPSEIEQEDSSQNSDVKIVEEKTDLARDQVLHRLSGFLDTWPKLENWFSDHQNTLVKVNAEMEESTVCKTVKEILIEEIYKKQNRRYVQEKSPEEKALPVTPQDLLSPVSVTPLIKPGTDEWIYVDEPLPKEIPDFLVPYWEMVENVYVNTIKTVLRCLRDEQYSVIYYLADIRKNFQDYLKHPDHKQEFVSQWQSDFNSIPDDLREDEETKAELHQRVTDLRDLLWDICDKRREEAEQERTDIMNDGWLRDHKGIAINHFFSLMQVEVDRFQDTKRLLHDYYRAMEGKIPTEDRQSFTRLPLLDIIDKEQQEDQNESRRIPLVSYKLPSPETNITKSKSKGNLLKSVKDENSSENVVVALGKDENVIRDTWQTAVTAVSDMVRAEIQSKEVKEEGEKQTEVKEDTKSSQTISSKSTGKDAKDTKKSPKSPTKTKGPRSTASAAEDSPVPLTAEELKKQKLILKIQQEYFAALKHEEKATKTRLKLIKAKALAYVEELTMKAEEAYKDMEKWLGERFLAEMSSVEKLIEVGRHHIESSSKIQYEMNLEETDFFISSDVKVIPDPVPPPQVPLIETSESSTLTISQLNTFHKHFLQVAPKAIRALKQFKGRSNSSSKREVDDRGKEKKDLEHPRIRKNRRFPKIWLTKYSWLKYDDERGIMFCALCRKHNVDLGESIHNFCSGTDDFKLEFINTHQNSEAHAWATCMEAASTASPNTVSAEQTLKSMNSITIGRVESTFRTCHAIAKSVQPFTDLDWIYKSDDVKGTDIGSLFRNYKSARMFKHFMAEAERRALKEELENCKFFSLISDEFTDSISKSAAVVYVHFANEGKVHCQIVGVQSVQKNDASTIKSAIEETFQINLQLSLASLDWSRKLVGFGSEETDVMTGQNNGVANLMREIQPCVQSVHCFAHRLRLAYKGALENIQLYSLTNGLRSMYYFYHSSTLNKKNLKAIYEAIKLHPAIPSCTGGSQWFSRLQTALQILLKGHPAFVLHLDKTKGDSRSSNRQKVKGLLYLLLKMEIVKFSHFLLDVINVLNILLHITMDHNSSIADIFATMQSTVETLQMYQARAGPMERLMKAIQHFHGHQLVGNGNISAVRTKVPSNVVKRLSDCFCDANQGVLKATLIGSFNLWPDKMKQVIVFGEKEVSVLSKHYEAILEAASVKISEVEIEWSMLKLELYNRFQNIQTLTWDSVNAHYSKKYPSILALVDLILTLPASSAEIDQGSGKESHHDASAL", "length": 2046 }, "evidence": [ { "id": "A0A5G2QPV2", "url": "https://omabrowser.org/oma/group/A0A5G2QPV2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58JJ34-1", "protein_name": "Sperm flagellar protein 2 isoform X1", "gene_name": "spef2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDIICQWLNSELRLSKVVEPHSFARDFSNGYLIGEILYRYELQDDFHLFSKQNTSNAKLNNFTRIEPTLQLLTVPFDLTMAKAVMLGRHGAATRLLYQLYILLQRKKRAGLTATAMEVMQPAATARLHRIENSIYTERLKTVVKREADLKMQKIAKRFHKRGQEMFSRSVMTELLKEEDRLKRQEERRLRDIEKHRQARRKQNEIMIQIQSAVVQIPKPPHIRTSRASEKQQQFRKKQEAQHVHREIAQFEKKKKTTSPPEGGALLFSGRVTQPMSTGDKAQWNKDYIENIRQRLEEDATAREQREMRRRRALMEQLQAHEAQQEALREEQMVSRLMRQTQQEKRITVQLMQIKQQKEVLRENRIFQERQYQERRQRDFQEALDREAVLAQQERLERSEQLRIEHELHKQLAEERAQARYQKHFGICRDILGQIVDLATKAGEYRLLTANLIPVKLMQEWMELFYSGKPLYEVACVDPKPTEPSPEQIIELEKLQILNNQDYDEYVAMIGEWALDAETERQTNAGNSDILDHVLNRLRNMIVPPTVSTPPPLFPRFTIRACMLGKTFSGKTTCLSRISSTLNIHVLSANTLIQDALSAYQQEKQAASESQNEKSLEKNVSQTEHTTEQLQKDEQETSSPLESGPQPHEASSGLHEKEDKEESKAIPKWSSRAQHGAAVEKVLRTGQAVPDQLLVDIIVDAIRNIPADSGWILDGFPVDISQAQMLEKALNMTELDGTKTQNNLSTTKNGPKDAAPPSPALDLVVLLDVSDEQVLERATTQPPEGTQIVNGESIKQEKGSSDAAEENTSMPDLNTQDPESLSDDKSLGRTQIQFRISGFHQTWPKLEKWFGDQQNILVKVTAGVDKDTLFSNVETILRDSIESVEKGAALADTRRASVTSTPEQTRPESACSSKSSRATPKSARRSFAEEPLPKELAEYLVPYWENVCSSYVTNVKTVMQNLRGERELIIHHLYNIRENFRQYLQKPDLKQEFVSSWQRDYNSVPDNIREDEETKGELHQRLDDLRERLWDISDKRKEEAEQEKAGVIHDGWLEDHTAVLINNYSALMQIEVGRFQDCVCLLKDHYSTMGKTAFESKCDFARVPLLDITADQHVDESKISESAPSEKSVKNAEEKDSEIVDRMKTKVFPLVSCRSPTSEILKQPLHQADENLLQEFFQAAIAIFRSMVSAEMRQWDEEEVDEDQKQMEAQKAQTLTSATDVRKAGKQKGAPPPPPPPEPSPQPAARNPEELRKRAEKKRFKQELSAALKPEENAVKQRLELVKAHGLRTVISLQHKAEQVYRNMEEWMKARYLAEMKSIDQLTDLVRQHIETGVQIRHELVLQSTDFCVDGDTRVLLSPELAPRRSLLEQPKNSTLTVQQLHVLCTQLRKIAPTGLMCRSELTEALHELTSAHMGTDVLPEAWMHITPSQVEELVCILAQDSEMLDWRQFLLSAALPWPFPTQTQLIKTLQRYRDIDTTGNGLITQEQYEQVELWFPSEQDASVPDDPTEPVPYDRLANLKKFFFSLFASTHSSPLLLDYLMMLLYFCCHPEAAQGFTRALSLITGHTLHYKHTTPLTQSVPCLEGAGVVDDAGADNEEEQHRGVESEDVGVSVDDVLRVLSHGEDLVLHLNRFQPVHRSRDELREELLKVFKELGFSVEEKIPFSTLSQHPFLQDLMEGSSQYLLHDIHKVFQTRQTEDSRSFST", "length": 1706 }, "evidence": [ { "id": "A0A5G2QPV2", "url": "https://omabrowser.org/oma/group/A0A5G2QPV2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C9J3-1", "protein_name": "Sperm flagella and cilia-associated protein 2", "gene_name": "Spef2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEILCQWLNQELRVSRTVSPKSFAKAFSNGYLIGEVLFKFELQSDFAEFSESRGSTAKLNNFSRLQPTLHLLGLQFDQNVAQSIITEKPGAATKLLYQLYIALQKKKKTGLTGLEIQTMQPQTNLRLQTLKSEAFREQRLNRRRQNEIMAKIQAAIIQIPKPESNRTLKAIEAQKLMKKKKEAEDVANEIKKFEALIKKDLQIKESVSKTSLETTDQTTAELLNTYSDDDYIKKIQKRLEEDAFAREQREKRRRRLLMDQLMAHEAQEEAYREEQLIHRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQFEERRLKDFQDALDREAALAKQAKIDFAEQTLREKEIHEKISVERAQQRYKKHYGICAEILDQMLDLCTKVADYRLLTNNLIPHKMMHDWKELFFSGIPIYEQTSLTHGQTEPTEDHRAEVKKRNLLDSKDYEDYKNMVGEWALPEDMVNSSPPSNNSILGHVLLRLIEKADPSASNAEATELPSLAVKGCILGKTLSGKTTVLKSLQNDFPVHVLSIDTLVQEAIQAFHERQKSGKTPPTQEDDKRDPVVNQEKVSKTQDKNVLAVSPVPGDRTSQKEGVKINEFEQFRSSDSFLSLSMRAQLGAKSELMLRRGKSIPDILLVSILVNAIKEIPVDQSWVLDGFPITLNQAKLLEEALTGYKRKFLQLKKKKEQMPTLALDPSTSTEVSLLPSALDFVILLDISDNSSLARTNDIIAKEISHEISHENVGRPGTGTSQDNKSEDRNLRDHIQHRIVGFLDNWPLLEEWFTQPKNILTKVNAEIDEALLCQKVKEIFATETVNKKIKVEKTLEEKETEKKAGAPPAEPPAMSPPLSSEAEKDKELHQAKTPGKGKTQSVSPKGKAQGGKVSVKKSPVGSAEVSPTPTAPPPPKAGTEEWVYVNEPIPEELPSFLVPYWELIEKSYINHIKTVLRHLRERQHNVLSYLYETRTSFQEFLRRPDHKQDFVSQWQADFNSVPEDLWEDEETKAELHQRVNDLRDRLWDICEARKEEAEQERLDIINESWLQDSIGITMNHFFSLMQAEVNRFQDTKRLLQDYYRAMESKIPLEDSKKFTRVPLVQLDGKEISESQLRIPLVPRISNSPENSAVKPKVGTFLKGRSDPPLEVLEANFEIDEKILLDTWQQASLAISNMVAAEVHQRLTEEEKEPPQLDSKEKSPQSGANKKAKKEKEAPKKKKTDKKGKGKSSPVAEVSPVTVTPEEMAEMEKRNELRLRIKEEHLAALQTEEQAAQFRLELIKLKALSVLEDLVTKVIDVYRLMEKWLGKRYLNEMASIQKLTELARYHIETATKIQNEIYLSQEDFYINGDIKVFPDPSPPTRPPPVEREENGTLTIEQLDNLRDQFLDMAPKGIIGNKAFSDILLDLITLNLGTNNFPSSWMHLSQLDLQEITSLLTVNTEFVDWRKFLMVTAMPWPMALEDELLDTLQRFKALDEAQTGTITYEQYKQAGLWFSGDEDIKIPENPLEPLPFNRQEHLIEFFFRLFADCEKEPPQLDYTQMLLYFACHPDTLEGVYRALSVAVGTHIFRQVETPMLMAEKTSISTVSPIEEFPETEESSAKEDRELKEEKDDQKEEEIPENANTEKISMETLLKVFGGGNEVLDANRFASYLKSENIYAENFIKTFQDLGARNLEPIAVNILLKHPYIQDLIANYVDYKFPDIKMILQRSEHAQGSDGERSPSRLTDEKK", "length": 1724 }, "evidence": [ { "id": "A0A5G2QPV2", "url": "https://omabrowser.org/oma/group/A0A5G2QPV2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C093-1", "protein_name": "Sperm flagella and cilia-associated protein 2", "gene_name": "SPEF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEILCQWLNKELKVSRTVSPKSFAKAFSSGYLLGEVLHKFELQDDFSEFLDSRVSSAKLNNFSRLEPTLNLLGVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKKKSGLTGVEMQTMQRLTNLRLQNMKSDTFQERLRHMIPRQTDFNLMRITYRFQEKYKHVKEDLAHLHFEKLERFQKLKEEQRCFDIEKQYLNRRRQNEIMAKIQAAIIQIPKPASNRTLKALEAQKMMKKKKEAEDVADEIKKFEALIKKDLQAKESASKTSLDTAGQTTTDLLNTYSDDEYIKKIQKRLEEDAFAREQREKRRRKLLMDQLIAHEAQEEAYREEQLINRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQHEERRLKDFQDALDREAALAKQAKIDFEEQFLKEKRFHDQIAVERAQARYEKHYSVCAEILDQIVDLSTKVADYRMLTNNLIPYKLMHDWKELFFNAKPIYEQASVKTLPANPSREQLTELEKRDLLDTNDYEEYKNMVGEWALPEEMVDNLPPSNNCILGHILHRLAEKSLPPRAESTTPELPSFAVKGCLLGKTLSGKTTILRSLQKDFPIQILSIDTLVQEAIQAFHDNEKVSEVLPIQKNDEEDALPVLQEEIKESQDPQHVFSAGPVSDEVLPETEGETMLSANADKTPKAEEVKSSDSFLKLTTRAQLGAKSEQLLKKGKSIPDVLLVDIIVNAINEIPVNQDCILDGFPMTLNQAQLLEEALTGCNRNLTEVERKKAQKSTLAIDPATSKEIPLPSPAFDFVILLDVSDTSSMSRMNDIIAEELSYKTAHEDISQRVAAENQDKDGDQNLRDQIQHRIIGFLDNWPLLEQWFSEPENILIKINAEIDKESLCEKVKEILTTEIAKKKNKVEKKLEEKEAEKKAAASLAELPLPTPPPAPPPEPEKEKEIHQSHVASKTPTAKGKPQSEAPHGKQESLQEGKGKKGETALKRKGSPKGKSSGGKVPVKKSPADSTDTSPVAIVPQPPKPGSEEWVYVNEPVPEEMPLFLVPYWELIENSYINTIKTVLRHLREDQHTVLAYLYEIRTSFQEFLKRPDHKQDFVAQWQADFNSLPDDLWDDEETKAELHQRVNDLRDRLWDICDARKEEAEQERLDIINESWLQDTLGMTMNHFFSLMQAELNRFQDTKRLLQDYYWGMESKIPVEDNKRFTRIPLVQLDSKDNSESQLRIPLVPRISISLETVTPKPKTKSVLKGKMDNSLENVESNFEADEKLVMDTWQQASLAVSHMVAAEIHQRLMEEEKENQPADPKEKSPQMGANKKVKKEPPKKKQEDKKPKGKSPPMAEATPVIVTTEEIAEIKRKNELRVKIKEEHLAALQFEEIATQFRLELIKTKALALLEDLVTKVVDVYKLMEKWLGERYLNEMASTEKLTDVARYHIETSTKIQNELYLSQEDFFINGNIKVFPDPPPSIRPPPVEKEEDGTLTIEQLDSLRDQFLDMAPKGIIGNKAFTDILIDLVTLNLGTNNFPSNWMHLTQPELQELTSLLTVNSEFVDWRKFLLVTSMPWPIPLEEELLETLQKFKAVDKEQLGTITFEQYMQAGLWFTGDEDIKIPENPLEPLPFNRQEHLIEFFFRLFADYEKDPPQLDYTQMLLYFACHPDTVEGVYRALSVAVGTHVFQQVKASIPSAEKTSSTDAGPAEEFPEPEENAAREERKLKDDTEKREQKDEEIPENANNEKMSMETLLKVFKGGSEAQDSNRFASHLKIENIYAEGFIKTFQDLGAKNLEPIEVAVLLKHPFIQDLISNYSDYKFPDIKIILQRSEHVQGSDGERSPSRHTEEKK", "length": 1822 }, "evidence": [ { "id": "A0A5G2QPV2", "url": "https://omabrowser.org/oma/group/A0A5G2QPV2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R095-1", "protein_name": "Sperm flagella and cilia-associated protein 2", "gene_name": "Spef2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEILCQWLNQELKVSRTVSPKSFAKTFSNGYLIGEVLFKFELQSDFSEFSESRVSTAKLNNFSRLQPTLHLLGVQFDQNVAQSIITEKPGAATKLLYQLYIALQKKKKTGLTGLEIQTMQPQTNQRLQALKSEAFRERLKNLIPRQTDFNLMRVTCRFQEKCKQMKEDLARMHFEKFEKIQKLEEEQRHFNIEKQRLNRRRQNEIMAKIQAAIIQIPKPEPNRTLKAIEAQKLMKKKKEAEDVANEIKKFEALIKKDLQTRESISKTSLDTIDQTAAELLNTYSDDDYIKKIQKRLEEDAFAREQREKRRRRLLMDQLIAHEAQEEAYREEQLIHRLMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQFEERRLKDFQDALDREAALTKQAKIDFAEQTLRAKEIHEKIAMERAQQRYEKHYGICAEILDQILDLCTKVADYRLLTNNLIPHKMMRDWKELFFSGNPIYEQTSHTHGQTESTEDHHVELNKRNLLDSKDYEDYKNMTGEWALPEDMANSSPPSNNNILGHVLLRLIENSYPSEKEVADTELPSFAVKGCLLGKTLSGKTTILKALQNDIPIQVLSIDTLVQEAIQAFNDGEKSSKAPSMHEDVKGDPEVDQKEMIIPQDKNELTDTQVPGEAAPQKEGTKSSDFEQFRPSNSFLSLSMRAQLGAKSELMLRRGKSVPDVLLVNILVNAIKKIPVNQSWVLDGFPMTVNQAKLLEEALTGYKRKSLQLKKKKAQMPTLALSPTTSKEVPFLPSAFDFAILLDISDNSSLARINDIIAKEISHEISHENVSGPTITSSEEKSEDRNLRDHIQHRIVGFLDNWPLLEEWFTEPRNILKKVNAEIDEAFLCQKIKEIFATEVSNKKIKVEKKLEEKETEKKSAVSPTEPPTPTPPLASEAEKEKEVHQAKPSGKGKTQSVSPKGKAQGGKISVKKSPIDSTEVSPTLIAMPTTKPGSEEWVYVTEPIPEELPSFLVPYWELIEKTYISHIKTVLRQLRESQHTVLSYLYETRTSFQEFLRRPDHKQDFVSQWQADFNSVPEDLWEDEETKAELHQRVNDLRDRLWDICEARKEEAEQERLDIINESWLQDYIGITMNHFFSLMQAEVNRFQDTKRLLQDYYRAMESRIPLEDNKKFTRIPLVQLDGKEISEHQLRIPLVPRISSSPENVSMRPKVKALLKGRFDPPLESLEANFEGDEKIVLDTWQQASLAISQMVAAEVHQRLAEEEKEQPQLDPKEKSPQSGTNKKAKKEKEQAKKEKEQAKKEKEQAKKEKEPPKKKMAEKKGKGKSSPVVEVSPVTITPEEMAEMERKNELKLKIKEEHLAALQTEEQATQFRLELIKSKALSILEDLVTKVIEVYRFMEKWLGKRYLNEMASIQKLTEVARYHIETATKIQNEIYLSQEDFYINGDIKVFPDPPPPTRPPPVEKEENGTLTIEQLDNLRDQFLDMAPKGIIGNKAFTDILLDLVTLNLGTNNLSSSWMHLTQLDLQEITSLLTVNTEFVDWRKFLMVAAMPWPIPLEEELLETLQRFKATDEAQTGTITFEQYKQAGLWFSGDEDIKIPENPLEPLPFNRQEHLIEFFFRLFADSEKDPPQLDYTQMLLYFACHPDTLEGVYRALSVAVGTHIFRQVETPMLTAEKTSISSVSPNEEFPEAEENSTREELKEEKDERDQKEEEIPENANTEKISMETLLKVFGGGNEVLDANRFASYLKTENIYSENLIKTFQDLGAKNLEPIEVNILLKHPYIQDLITNYVDYKIPDIKMILQRSEHAQGSDGERSPSRLTDEKK", "length": 1801 }, "evidence": [ { "id": "A0A5G2QPV2", "url": "https://omabrowser.org/oma/group/A0A5G2QPV2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "pmid": "" }, { "name": "manchette", "id": "GO:0002177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002177", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1129, "end_pos": 1131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1452, "end_pos": 1454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1640, "end_pos": 1642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1913, "end_pos": 1915, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1960, "end_pos": 1962, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV2" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 105, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 759, 906 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1129, "end_pos": 1131 }, { "start_pos": 1452, "end_pos": 1454 }, { "start_pos": 1640, "end_pos": 1642 }, { "start_pos": 1913, "end_pos": 1915 }, { "start_pos": 1960, "end_pos": 1962 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 782, "end_pos": 784 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNH6-1", "uniprot_ac": "A0A5G2QNH6", "uniprot_id": "A0A5G2QNH6_PIG", "mass": { "chemical_mass": 114262.0, "monoisotopic_mass": 114262.0 }, "refseq": {}, "gene_names": [ { "name": "PSD3", "type": "recommended", "evidence": [ { "id": "A0A5G2QNH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ] } ], "protein_names": [ { "name": "Pleckstrin and Sec7 domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QNH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6", "locus": { "chromosome": "17", "start_pos": 13264174, "end_pos": 12758536, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007034", "url": "https://www.ensembl.org/id/ENSSSCG00000007034" } ] } } ], "crossref": [ { "id": "A0A5G2QNH6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNH6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007034", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007034", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00171", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00171", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13295", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13295", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623956", "url": "https://www.ncbi.nlm.nih.gov/gene/100623956", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623956", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623956", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LEWTINE", "url": "https://omabrowser.org/oma/group/LEWTINE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AHS5", "url": "https://www.orthodb.org/?gene=A0A287AHS5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L6H3", "url": "https://www.orthodb.org/?gene=I3L6H3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AHS5", "url": "https://www.uniprot.org/uniprotkb/A0A287AHS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR22-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6H3", "url": "https://www.uniprot.org/uniprotkb/I3L6H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6H3-1", "url": "https://www.uniprot.org/uniprotkb/I3L6H3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDYRRSPSAVREHWPFCTAPPDVWGTDAQSRNTLGCSIRQAQAADGAENSAVSGGGTEAPATCPGPLRSAGSTGTTPRARGARLCWYRAPLLTCRSFPASPAALPLKAETFVWVNNASAHSQSVAKAKYEFLFGRPEEKTSDTSDHGGSTLLPPNVTNEFPEYGTMEESGEGLRASLDFDAEPLPCRPQGQQGVQLLAGHPPGLVSVTGGPKDIGQAPSQSHLKEQSLQPIDSLISALKATEARIASGTLQATKVQDRDALPGFSGQQVEQEPDTASHKTQRANKPFPAGREKSPKIPLSAEVTTEDSIYLSIQKDLTALLTGEAEAELSRAAARGQKEAVLVREPACPASFEGGLETHSSASGASLLRERRSDQGREHPGCGGRGSSSGHQGHVKHVGFQGVEILWTGGEGRETRLPVDVPTSRERTAPPESTAFSKGPGRLVSPAAQCHSAGLPESVWDDAQGAPSEAPATGSGPFPPVPLLESGEDEVFLRENKEHLEKPELEKDRERVLEQEEHFRGGDDDVLGSAYAEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGGQFLDRTSMGGQQDVLSISADGGIVMGYSGGITNGLSGSSNSIYTKGTPEIAFWGSNAGVKTALLEAHSEMGSTEILEKETSGSLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAVMLLNTDLHGHNIGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSLSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASQATDYEKKPNVLKLKTADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQGWDLALEGQCCVSGAQCSVLSFVLHVGS", "length": 1055, "header": "tr|A0A5G2QNH6-1|A0A5G2QNH6_PIG Isoform 1 of Pleckstrin and Sec7 domain containing 3 OS=Sus scrofa OX=9823 GN=PSD3 PE=4 SV=1 CANONICAL=A0A5G2QNH6-1" }, "isoforms": [ { "isoform_ac": "A0A287AHS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHS5/entry", "sequence": { "sequence": "MEESGEGLRASLDFDAEPLPCRPQGQQGVQLLAGHPPGLVSVTGGPKDIGQAPSQSHLKEQSLQPIDSLISALKATEARIASGTLQATKVQDRDALPGFSGQQVEQEPDTASHKTQRANKPFPAGREKSPKIPLSAEVTTEDSIYLSIQKDLTALLTGEAEAELSRAAARGQKEAVLVREPACPASFEGGLETHSSASGASLLRERRSDQGREHPGCGGRGSSSGHQGHVKHVGFQGVEILWTGGEGRETRLPVDVPTSRERTAPPESTAFSKGPGRLVSPAAQCHSAGLPESVWDDAQGAPSEAPATGSGPFPPVPLLESGEDEVFLRENKEHLEKPELEKDRERVLEQEEHFRGGDDDVLGSAYAEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGGQFLDRTSMGGQQDVLSISADGGIVMGYSGGITNGLSGSSNSIYTKGTPEIAFWGSNAGVKTALLEAHSEMGSTEILEKETSGSLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAVMLLNTDLHGHNIGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSLSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASQATDYEKKPNVLKLKTADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQISTELAEHRSYPPDKKVKAKEVDEYRLKDHYLEFEKTRYEVYVRVLKEGGAELLGSGGPAGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPSIKQKVT", "length": 978, "header": "tr|A0A287AHS5-1|A0A287AHS5_PIG Computationally mapped isoform of Pleckstrin and Sec7 domain containing 3 OS=Sus scrofa OX=9823 GN=PSD3 PE=4 SV=1 CANONICAL=A0A5G2QNH6-1" }, "locus": { "chromosome": "17", "start_pos": 13259483, "end_pos": 12935498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046428.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046428.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043434.1" } ] } }, { "isoform_ac": "A0A5G2QNH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6/entry", "sequence": { "sequence": "MGDYRRSPSAVREHWPFCTAPPDVWGTDAQSRNTLGCSIRQAQAADGAENSAVSGGGTEAPATCPGPLRSAGSTGTTPRARGARLCWYRAPLLTCRSFPASPAALPLKAETFVWVNNASAHSQSVAKAKYEFLFGRPEEKTSDTSDHGGSTLLPPNVTNEFPEYGTMEESGEGLRASLDFDAEPLPCRPQGQQGVQLLAGHPPGLVSVTGGPKDIGQAPSQSHLKEQSLQPIDSLISALKATEARIASGTLQATKVQDRDALPGFSGQQVEQEPDTASHKTQRANKPFPAGREKSPKIPLSAEVTTEDSIYLSIQKDLTALLTGEAEAELSRAAARGQKEAVLVREPACPASFEGGLETHSSASGASLLRERRSDQGREHPGCGGRGSSSGHQGHVKHVGFQGVEILWTGGEGRETRLPVDVPTSRERTAPPESTAFSKGPGRLVSPAAQCHSAGLPESVWDDAQGAPSEAPATGSGPFPPVPLLESGEDEVFLRENKEHLEKPELEKDRERVLEQEEHFRGGDDDVLGSAYAEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGGQFLDRTSMGGQQDVLSISADGGIVMGYSGGITNGLSGSSNSIYTKGTPEIAFWGSNAGVKTALLEAHSEMGSTEILEKETSGSLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAVMLLNTDLHGHNIGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSLSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASQATDYEKKPNVLKLKTADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQGWDLALEGQCCVSGAQCSVLSFVLHVGS", "length": 1055, "header": "tr|A0A5G2QNH6-1|A0A5G2QNH6_PIG Isoform 1 of Pleckstrin and Sec7 domain containing 3 OS=Sus scrofa OX=9823 GN=PSD3 PE=4 SV=1 CANONICAL=A0A5G2QNH6-1" }, "locus": { "chromosome": "17", "start_pos": 13234324, "end_pos": 12758641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088386.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088386.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065600.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065600.1" } ] } }, { "isoform_ac": "A0A5G2QR22-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR22/entry", "sequence": { "sequence": "MEESGEGLRASLDFDAEPLPCRPQGQQGVQLLAGHPPGLVSVTGGPKDIGQAPSQSHLKEQSLQPIDSLISALKATEARIASGTLQATKVQDRDALPGFSGQQVEQEPDTASHKTQRANKPFPAGREKSPKIPLSAEVTTEDSIYLSIQKDLTALLTGEAEAELSRAAARGQKEAVLVREPACPASFEGGLETHSSASGASLLRERRSDQGREHPGCGGRGSSSGHQGHVKHVGFQGVEILWTGGEGRETRLPVDVPTSRERTAPPESTAFSKGPGRLVSPAAQCHSAGLPESVWDDAQGAPSEAPATGSGPFPPVPLLESGEDEVFLRENKEHLEKPELEKDRERVLEQEEHFRGGDDDVLGSAYAEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGGQFLDRTSMGGQQDVLSISADGGIVMGYSGGITNGLSGSSNSIYTKGTPEIAFWGSNAGVKTALLEAHSEMGSTEILEKETSGSLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAVMLLNTDLHGHNIGKKMTCQEFIANLQGVDEGGDFSKDLLKVSIKMLNSVQSTSKVRVRTSGSVKYSREDSIRRQSHRSKSMKISNSSEFSAKEAKALYNSIKNEKLEWAVDDEEKKKSLSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASQATDYEKKPNVLKLKTADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQISTELAEHRSYPPDKKVKAKEVDEYRLKDHYLEFEKTRYEVYVRVLKEGGAELLGSGGPAGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPSIKQKVT", "length": 1033, "header": "tr|A0A5G2QR22-1|A0A5G2QR22_PIG Computationally mapped isoform of Pleckstrin and Sec7 domain containing 3 OS=Sus scrofa OX=9823 GN=PSD3 PE=4 SV=2 CANONICAL=A0A5G2QNH6-1" }, "locus": { "chromosome": "17", "start_pos": 13259483, "end_pos": 12935498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090181.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090181.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067367.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067367.2" } ] } }, { "isoform_ac": "I3L6H3-1", "url": "https://www.uniprot.org/uniprotkb/I3L6H3/entry", "sequence": { "sequence": "MSSWCLSSCCNAGVKTALLEAHSEMGSTEILEKETSGSLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSRLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAVMLLNTDLHGHNIGKKMTCQEFIANLQGVDEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSLSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEEDLKNAVSVHHALASQATDYEKKPNVLKLKTADWRVLLFQAQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQISTELAEHRSYPPDKKVKAKEVDEYRLKDHYLEFEKTRYEVYVRVLKEGGAELLGSGGPAGLKKSHSSPSLNPDSSPVTAKVKRNVSERKDHRPETPSIKQKVT", "length": 510, "header": "tr|I3L6H3-1|I3L6H3_PIG Computationally mapped isoform of Pleckstrin and Sec7 domain containing 3 OS=Sus scrofa OX=9823 GN=PSD3 PE=4 SV=4 CANONICAL=A0A5G2QNH6-1" }, "locus": { "chromosome": "17", "start_pos": 13259483, "end_pos": 13004619, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028117.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028117.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019624.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019624.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623956", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623956", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2PFD7-1", "protein_name": "PH and SEC7 domain-containing protein 3", "gene_name": "Psd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGRNAAAEPFVWVNSASAHSQSVAKAKYEFLFGKSEEKTPDSSDHGGSTLLPPTVTNEFPEYGTMEEGGEGLRASLDFDAKSPPCRLPGQQAVHLLAGQDSILNSVTEGPNDAPQCHPQEQSLQPIDSLISALKATEARIASGTFQATKVLDKDANFSVYQVDKELSTASHKPQRAHRTFPVGPGKSPDIPLSAEVPTEENLSLHIQEDLSALLPEEAQAHRSQITNYRRQGPLRVPESACPVSSSSAGSHNPVDRVGALREQRSDLGREHPRGYDRGGSMGRQGRIKHVEFQGVEILWTGEEAESRHPPERTASPVSKEFAKRPSHSSPACGVCSTSTHLTGDVWDETCKAPSERPGTSAGTLSPMPLGESGEDDVFLRESKEHLEENFAIQGDKERILDQEEHLRGDDDILGPGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGGQFLERTSVGGQHDVLSVSADGGIVMGYSAGITNGLHDSANSVYTRGPQEIAFWGSRDRCFAEGKTTGVDAGSEMGSTDILEKETTESLSNGTNSNVEAAKRLAKRLYHLDRFKRSDVAKHLGKNNEFSKLVAEEYLKFFDFTGMTLDQSLRYFLKAFSLVGETQERERVLIHFSNRYFSCNPDTITSKDGVHCLTCAMMLLNTDLHGHVNIGKKMTCQEFITNLQGVNEGGDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSEGTDEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKSLSDEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLEFEKTRYEIYVSVLKEGGKELLTTDGNEPVGLKKSHSSPSLNPDASPVTAKVKRNVSERKDHRPETPGIKQKVT", "length": 1037 }, "evidence": [ { "id": "A0A5G2QNH6", "url": "https://omabrowser.org/oma/group/A0A5G2QNH6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "pmid": "" }, { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "pmid": "" }, { "name": "regulation of ARF protein signal transduction", "id": "GO:0032012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 675, "end_pos": 677, "annotation": "n_glycosylation_sequon" }, { "start_pos": 856, "end_pos": 858, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1055, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNH6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 883, "end_pos": 996, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH6" }, { "id": "PS50190", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50190" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEC7", "eco_id": "ECO_0000259", "start_pos": 647, "end_pos": 832, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 156, "end_pos": 158 }, { "start_pos": 550, "end_pos": 552 }, { "start_pos": 675, "end_pos": 677 }, { "start_pos": 856, "end_pos": 858 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNI1-1", "uniprot_ac": "A0A5G2QNI1", "uniprot_id": "A0A5G2QNI1_PIG", "mass": { "chemical_mass": 38802.0, "monoisotopic_mass": 38802.0 }, "refseq": { "ac": "XP_020928522", "name": "glycosyltransferase 1 domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928522" }, "gene_names": [ { "name": "GLT1D1", "type": "recommended", "evidence": [ { "id": "A0A5G2QNI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ] }, { "name": "GLT1D1", "type": "synonym", "evidence": [ { "id": "XP_020928522", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928522" } ] } ], "protein_names": [ { "name": "Glycosyltransferase 1 domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QNI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1/entry#names_and_taxonomy" } ] }, { "name": "glycosyltransferase 1 domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020928522", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928522" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLT1D1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1", "locus": { "chromosome": "14", "start_pos": 25998644, "end_pos": 26109033, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033067", "url": "https://www.ensembl.org/id/ENSSSCG00000033067" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033067", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033067", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03801", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03801", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623172", "url": "https://www.ncbi.nlm.nih.gov/gene/100623172", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FSEWHSE", "url": "https://omabrowser.org/oma/group/FSEWHSE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46660:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46660:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928522", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928522", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AR25", "url": "https://www.uniprot.org/uniprotkb/A0A287AR25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR25-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLLFLAVLRRHTGNAVTAQRIRDHLEATGHVCILKDAFDFGSPSEIANFIKAENLEAAVALHLYRGGRLVQGHGIPFGIIFGGTDLNEDVNHGEKNKVMGKVLEEARFAVAFTESMKEMAQTQWPHARGKIYVQNQGIATVPNATFNWNTFLQHSEINQSADSLHVFLLICGLRQVKDPLYLVEAFSEWHQEEPNVYMVIVGPEVDPVFTREVKAKVKRTPGVRLIGEMAQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVTHEVTGLLFSDPQEFVRLAKRLVSDPALEKEIVANAREYVREHHSWQVERNTYRHLIRTLQRSIED", "length": 346, "header": "tr|A0A5G2QNI1-1|A0A5G2QNI1_PIG Isoform 1 of Glycosyltransferase 1 domain-containing protein 1 OS=Sus scrofa OX=9823 GN=GLT1D1 PE=3 SV=2 CANONICAL=A0A5G2QNI1-1" }, "isoforms": [ { "isoform_ac": "A0A287AR25-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR25/entry", "sequence": { "sequence": "MRLLFLAVLRRHTGNAVTAQRIRDHLEATGHVCILKDAFDFGSPSEIANFIKAENLEAAVALHLYRGGRLVQGHGIPFGIIFGGTDLNEDVNHGEKNKVMGKVLEEARFAVAFTESMKEMAQTQWVDPVFTREVKAKVKRTPGVRLIGEMAQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVTHEVTGLLFSDPQEFVRLAKRLVSDPALEKEIVANAREYVREHHSWQVERNTYRHLIRTLQRSIED", "length": 266, "header": "tr|A0A287AR25-1|A0A287AR25_PIG Computationally mapped isoform of Glycosyltransferase 1 domain containing 1 OS=Sus scrofa OX=9823 GN=GLT1D1 PE=4 SV=2 CANONICAL=A0A5G2QNI1-1" }, "locus": { "chromosome": "14", "start_pos": 26108917, "end_pos": 26000389, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043054.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043054.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046402.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046402.2" } ] } }, { "isoform_ac": "A0A5G2QNI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1/entry", "sequence": { "sequence": "MRLLFLAVLRRHTGNAVTAQRIRDHLEATGHVCILKDAFDFGSPSEIANFIKAENLEAAVALHLYRGGRLVQGHGIPFGIIFGGTDLNEDVNHGEKNKVMGKVLEEARFAVAFTESMKEMAQTQWPHARGKIYVQNQGIATVPNATFNWNTFLQHSEINQSADSLHVFLLICGLRQVKDPLYLVEAFSEWHQEEPNVYMVIVGPEVDPVFTREVKAKVKRTPGVRLIGEMAQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVTHEVTGLLFSDPQEFVRLAKRLVSDPALEKEIVANAREYVREHHSWQVERNTYRHLIRTLQRSIED", "length": 346, "header": "tr|A0A5G2QNI1-1|A0A5G2QNI1_PIG Isoform 1 of Glycosyltransferase 1 domain-containing protein 1 OS=Sus scrofa OX=9823 GN=GLT1D1 PE=3 SV=2 CANONICAL=A0A5G2QNI1-1" }, "locus": { "chromosome": "14", "start_pos": 26108917, "end_pos": 26000389, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068496.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068496.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063643.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063643.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MRJ2-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "Glt1d1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAERLRDHLEAAGHMCVLRDAFDFESPSDIDNLITTENLEAALALHLYRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKNEVMGRVLEEARFAVAFTEAMKDTAQVHWPHATGKIFVQSQGIATKPNANFNWNTFLQQSEIDQNADNLYVFLIICGLRPVKDPLYLVDAFSEWHQEEPSVYMVIVGPEVDPVFTREVKDRVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLLSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLVRKLED", "length": 342 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8M2BEP1-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "glt1d1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRVLFLAYLSPKTGNCTTAERIRNHIEAAGHTCVLCDTRGLSSASDVSSLMTQEPRFEAALAIHLFKGGRLLLDVGLPFGVVFGGTDVNEDVRDEHKRAVMEEVLRKARFAVAFTDALKEQAEMLLVCESKKIHVQPQGIETRVASNFSWSDFLHNTGVCSKQVENLQVFLLVCGLRRVKDPLYLVEAFSEWHSQNPLVILIIIGPKMDPVFTAEVEESVKRFVGVFLADDLSQEELHAAMQKSFALVNSSLSEGMSAAILEAMDLGLPVLARDVPGNAAIVEHQVTGLLYSSPQEFISMSQKLLDDKELRKRLVRNGKNYITTCHNPMKERTTYQELLKKLH", "length": 343 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZFX5-1", "protein_name": "Glycosyltransferase 1 domain containing 1", "gene_name": "GLT1D1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLLLLACLRAQTGNATTAARIHHLHDAGHICVLKDASRCESLTEIANLTSADQFDAALAIHLYKGGRHLQGSRIPFGIIFGGTDINEDIRSEEKRRVMGAVLREARFAVAFTTEMKELAAAEWPDARKKIYVQYQGIRTTPTETFDWYRFLQNADIPADTDDLRVFLLICGLRRVKDPLYLVDVFSDWHRKEPSVHLGIIGPAVDPLLTTEIKEKIKRAPGVHLLQEMPQDDLHAAMRRCFAVVNSSISEGMSAAILEAMDLNIPVLARNIPGNAAIIKHKDTGLLFSDPQEFVALSKSLMNDPIMEREIVTRAKDYVKKHHSWECERKAYQNLVLRLR", "length": 340 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4FUP9-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "Glt1d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIMDENLEAALALHLYRGGRLLQGHSIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAQVQWPHATGKIFVQSQGIATIPNANFNWNTFLQQSEIDQSADNLYIFLIICGLRPVKDPLYLVDAFSEWHQETPNVYMVIVGPEVDPVFTREVKERVRRAAGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLIRKLETNLED", "length": 346 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZUX2-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "Glt1d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAGRLRDHLEAAGHMCVLRDAFDFESPSEIANLIVGENLEAALALHLYRGGRLLQGHGIPFGVIFGGTDLNEDANHKEKKEVMGKVLEEARFAVAFTEAMKDTAEVQWPHATGKIFVQSQGIATIPNADFNWNTFLQQSEIDQSADDLHIFLVICGLRPVKDPLYLVDAFSEWHQETPNVYMVIVGPEVDPVFTREVKDRVRRASGVRLIREMCQEDLHAVVKSCFALVNSSVSEGMSAAILEAMDLEVPVLARNIPGNSAVVEHGVTGLLFSNPQEFIQLAKRLVSDPALEKEIVTNGREYVRTHHSWQVERDTYQRLIGKLEACSED", "length": 346 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96MS3-1", "protein_name": "Glycosyltransferase 1 domain-containing protein 1", "gene_name": "GLT1D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLLFLAVLRPHTGNAVTAQRVRAHLEAAGHVCVLKDAFDFESRSEIANLILAENCEAALALHLYRGGRLLQGHRIPFGVIFGGTDVNEDANQAEKNTVMGRVLEEARFAVAFTESMKEMAQAQWPHAKGKVYVQSQGIATTPNAAFNWNTFLQRSEINQSADNLHIFLLICGLRQVKDPLYLVDAFSAWHQEEPNVHLVIVGPEVDPVFTREVKAKVKRAAGVRLIGEMPQEDLHAVVKNCFAVVNSSVSEGMSAAILEAMDLEVPVLARNIPGNAAVVKHEVTGLLFSNPQEFVHLAKRLVSDPALEKEIVVNGREYVRMYHSWQVERDTYQQLIRKLEGSTED", "length": 346 }, "evidence": [ { "id": "A0A5G2QNI1", "url": "https://omabrowser.org/oma/group/A0A5G2QNI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI1" }, { "id": "PF00534", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 1", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 318, "start_aa": "Gln", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 }, { "start_pos": 159, "end_pos": 161 }, { "start_pos": 247, "end_pos": 249 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNI2-1", "uniprot_ac": "A0A5G2QNI2", "uniprot_id": "A0A5G2QNI2_PIG", "mass": { "chemical_mass": 26475.0, "monoisotopic_mass": 26475.0 }, "refseq": { "ac": "XP_003360368", "name": "PDZ domain-containing protein MAGIX isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360368" }, "gene_names": [ { "name": "MAGIX", "type": "recommended", "evidence": [ { "id": "A0A5G2QNI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2" } ] }, { "name": "MAGIX", "type": "synonym", "evidence": [ { "id": "XP_003360368", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360368" } ] } ], "protein_names": [ { "name": "MAGI family member, X-linked", "type": "synonym", "evidence": [ { "id": "A0A5G2QNI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2/entry#names_and_taxonomy" } ] }, { "name": "PDZ domain-containing protein MAGIX isoform X6", "type": "synonym", "evidence": [ { "id": "XP_003360368", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360368" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAGIX", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2", "locus": { "chromosome": "X", "start_pos": 43211635, "end_pos": 43207062, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012295", "url": "https://www.ensembl.org/id/ENSSSCG00000012295" } ] } } ], "crossref": [ { "id": "A0A5G2QNI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012295", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012295", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514936", "url": "https://www.ncbi.nlm.nih.gov/gene/100514936", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514936", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VEHQPQH", "url": "https://omabrowser.org/oma/group/VEHQPQH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QNI2", "url": "https://www.orthodb.org/?gene=A0A5G2QNI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RW42", "url": "https://www.orthodb.org/?gene=F1RW42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47646", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47646", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47646:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47646:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360368", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360368", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW42", "url": "https://www.uniprot.org/uniprotkb/F1RW42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW42-1", "url": "https://www.uniprot.org/uniprotkb/F1RW42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPRAGGATDPRGSGGGGGLPPRAGPSARERLARLDARPLAARAAADVAALVRRAGATLRLRPKEAISVLDSADIEVTDSRLPNATFMAHRPQPGDLVLHINGESTQGLTHAQVVERIRASGPRLCLVLSRPPKTHPGKPEGVGGSRKEDDLSPDPGRPEVMRSRSASTSPLQHPRPRTTPQTRGSAELSPAGAADGPADPPLERCTEDPEDQTPDSPGPWLVPSEERLSRALGVPGAAQFALEMAAGRRRH", "length": 252, "header": "tr|A0A5G2QNI2-1|A0A5G2QNI2_PIG Isoform 1 of MAGI family member, X-linked OS=Sus scrofa OX=9823 GN=MAGIX PE=4 SV=1 CANONICAL=A0A5G2QNI2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2/entry", "sequence": { "sequence": "MEPRAGGATDPRGSGGGGGLPPRAGPSARERLARLDARPLAARAAADVAALVRRAGATLRLRPKEAISVLDSADIEVTDSRLPNATFMAHRPQPGDLVLHINGESTQGLTHAQVVERIRASGPRLCLVLSRPPKTHPGKPEGVGGSRKEDDLSPDPGRPEVMRSRSASTSPLQHPRPRTTPQTRGSAELSPAGAADGPADPPLERCTEDPEDQTPDSPGPWLVPSEERLSRALGVPGAAQFALEMAAGRRRH", "length": 252, "header": "tr|A0A5G2QNI2-1|A0A5G2QNI2_PIG Isoform 1 of MAGI family member, X-linked OS=Sus scrofa OX=9823 GN=MAGIX PE=4 SV=1 CANONICAL=A0A5G2QNI2-1" }, "locus": { "chromosome": "X", "start_pos": 43211406, "end_pos": 43207098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087538.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087538.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066453.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066453.1" } ] } }, { "isoform_ac": "F1RW42-1", "url": "https://www.uniprot.org/uniprotkb/F1RW42/entry", "sequence": { "sequence": "MEPRAGGATDPRGSGGGGGLPPRAGPSARERLARLDARPLAARAAADVAALVRRAGATLRLRPKEAISVLDSADIEVTDSRLPNATFMAHRPQHRRSETLGTRTAPPQVTQSKTRGASKPLQASGRFCVELIRSSMGFGLTLSGGRDTGGDAPLAVRGLLKDGPAQRCGRLQPGDLVLHINGESTQGLTHAQVVERIRASGPRLCLVLSRPPKTHPGKPEGVGGSRKEDDLSPDPGRPEVMRSRSASTSPLQHPRPRTTPQTRGSAELSPAGAADGPADPPLERCTEDPEDQTPDSPGPWLVPSEERLSRALGVPGAAQFALEMAAGRRRH", "length": 331, "header": "tr|F1RW42-1|F1RW42_PIG Computationally mapped isoform of MAGI family member, X-linked OS=Sus scrofa OX=9823 GN=MAGIX PE=4 SV=3 CANONICAL=A0A5G2QNI2-1" }, "locus": { "chromosome": "X", "start_pos": 43211406, "end_pos": 43207098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013444.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013444.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013084.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013084.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514936", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514936", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QIG0-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "Magix", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MESRAGNTADPRGSRGGGGLPGSGGPRARQLLERLDARPLAARAAADFSELVRKASATLRLRHKEAVSILDSADIEVTDSRLPHTTLVEHRSQHRRSETLGTYMEPPPVTQHKASYTLKLPQATRQFSVELVRGPAGFGFTLKGGRGVSGDVPLAVRGLLKDGPAHRCGRLQAGDLVLHINGESTQGLTHAQVVERIRAGGPRLCLVLRRPQERDASKTEEVGGHQKRDCSPDPRGSRMTRSRSTISPVHQTLKSRTCLEPSPEAVAAGHVVPIVEHPAEDLKDHIPGAPGTPGPWLVPSEDRLSQALGVRGGGGGAQIAQEMAAGKQRH", "length": 330 }, "evidence": [ { "id": "A0A5G2QNI2", "url": "https://omabrowser.org/oma/group/A0A5G2QNI2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4KL35-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "Magix", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSRAGNTADPRGGRRGGGLQGSRSPRARQLLERLDARPLAARAAADLTALVRKAGATLRLRHTEGVSGLDSADIEVTDSRLPHATLVKHRPQHQRSETLGTWTEPLPVTQNKASYALKVPQATGRFSVELTRGPAGFGLTLSGGRNVSGDAPLTVHGLLKDGPAQRCGRLQAGDLVLYINGQSTQGLTHAQVVERIRTGGPHLCLVLQRPQDMDGSRIKEVGGHRKTDRSLDPRGSRVESRSTISPVHHRPKTRTSPRPSPEAVAIGHVVRAVEHPTEDLENRIPGTPGPWLVPSEDRLSRALGVRGGGAQLALEMAAGRRRH", "length": 324 }, "evidence": [ { "id": "A0A5G2QNI2", "url": "https://omabrowser.org/oma/group/A0A5G2QNI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AYQ0-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "Magix", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSHAGNTADPRGSRRGVGLQGSGSPRARQLLERLDARPLAARAAADLSALVRKAGATLRLRHKEAISGLDSADIEVADSRLPHATLVEHRPQHQRSDTQGPRMEPLPVIQNKASYASRLPQATGRFSVELVRGPAGFGLTLSGGRNVSGNVPLAVCGLLKDGPAQRCGHLQAGDLVLYINGQSTRGLTHAQAVEWIRTGGPRLCLVLQRPQEMNGSRSKEVGGGHQKTDRIPDPRGGRMMESRGTISPVHHRPKTRTGPGPSPESVATGHVVRAAEHPAEDLEDRIPGSPGPWLVPSEDRLSRALGIRGGGVQLAQEMAAGRRRH", "length": 326 }, "evidence": [ { "id": "A0A5G2QNI2", "url": "https://omabrowser.org/oma/group/A0A5G2QNI2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H6Y5-1", "protein_name": "PDZ domain-containing protein MAGIX", "gene_name": "MAGIX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPRTGDAADPRGSRGGRGPSPLAGPSARQLLARLDARPLAARAAVDVAALVRRAGATLRLRRKEAVSVLDSADIEVTDSRLPHATIVDHRPQHRWLETCNAPPQLIQGKARSAPKPSQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLETHPGKPRGVGEPRKGVVPSWPDRSPDPGGPEVTGSRSSSTSLVQHPPSRTTLKKTRGSPEPSPEAAADGPTVSPPERRAEDPNDQIPGSPGPWLVPSEERLSRALGVRGAAQLAQEMAAGRRRH", "length": 334 }, "evidence": [ { "id": "A0A5G2QNI2", "url": "https://omabrowser.org/oma/group/A0A5G2QNI2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNI2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 252, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNI2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNI2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNI2" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 93, "end_pos": 133, "start_aa": "Gln", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNK1-1", "uniprot_ac": "A0A5G2QNK1", "uniprot_id": "A0A5G2QNK1_PIG", "mass": { "chemical_mass": 58225.0, "monoisotopic_mass": 58225.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF883", "type": "recommended", "evidence": [ { "id": "A0A5G2QNK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ] } ], "protein_names": [ { "name": "Zinc finger protein 883", "type": "synonym", "evidence": [ { "id": "A0A5G2QNK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF883", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1", "locus": { "chromosome": "1", "start_pos": 253666591, "end_pos": 253695401, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047560", "url": "https://www.ensembl.org/id/ENSSSCG00000047560" } ] } } ], "crossref": [ { "id": "A0A5G2QNK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047560", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047560", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ERNVNVNYVVNPSAETLILFNIKEYILERKKPYECNECGKAFSQSTNLIQHQRVHTGEKPYKCNECEKAFSHRSSLKNHERIHTGEKPYPCKECGKAFGHISALIQHHRIHTGKKPYVCVKCGKTFSRSTHLIEHQGIHSGEKSYQCKECRKVLYHSTSLIRHQRTHTGEKLHKCNECGKAFSHTPAFIQHQRIHTGEKPYECNECGKAFSQSTNLIQHQRVHTGEKPYKCNECEKAFSHRSSLKNHERIHTGEKPYPCNECGKAFSHISALIQHHRIHTGKKPYVCVKCGKTFSRSTHLIEHQRIHSGEKSYQCKDCRKVFCHSTSLTRHRRTHTGEKPYKCNECGKAFSHTPAFIQHQRIHTGEKPFECNECGKAFNRSAHLTEHQRTHTGEKPYVCKECGKTFSRSTHLTEHLKIHSGEKPYQCNECQKQFCYRTSLIRHQRNHTEEKPYQCNECGKSFSLSSALFKHKQTHRTEKPYQSNECGKACSHRSSFIPEHSQ", "length": 502, "header": "tr|A0A5G2QNK1-1|A0A5G2QNK1_PIG Isoform 1 of Zinc finger protein 883 OS=Sus scrofa OX=9823 GN=ZNF883 PE=3 SV=1 CANONICAL=A0A5G2QNK1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1/entry", "sequence": { "sequence": "ERNVNVNYVVNPSAETLILFNIKEYILERKKPYECNECGKAFSQSTNLIQHQRVHTGEKPYKCNECEKAFSHRSSLKNHERIHTGEKPYPCKECGKAFGHISALIQHHRIHTGKKPYVCVKCGKTFSRSTHLIEHQGIHSGEKSYQCKECRKVLYHSTSLIRHQRTHTGEKLHKCNECGKAFSHTPAFIQHQRIHTGEKPYECNECGKAFSQSTNLIQHQRVHTGEKPYKCNECEKAFSHRSSLKNHERIHTGEKPYPCNECGKAFSHISALIQHHRIHTGKKPYVCVKCGKTFSRSTHLIEHQRIHSGEKSYQCKDCRKVFCHSTSLTRHRRTHTGEKPYKCNECGKAFSHTPAFIQHQRIHTGEKPFECNECGKAFNRSAHLTEHQRTHTGEKPYVCKECGKTFSRSTHLTEHLKIHSGEKPYQCNECQKQFCYRTSLIRHQRNHTEEKPYQCNECGKSFSLSSALFKHKQTHRTEKPYQSNECGKACSHRSSFIPEHSQ", "length": 502, "header": "tr|A0A5G2QNK1-1|A0A5G2QNK1_PIG Isoform 1 of Zinc finger protein 883 OS=Sus scrofa OX=9823 GN=ZNF883 PE=3 SV=1 CANONICAL=A0A5G2QNK1-1" }, "locus": { "chromosome": "1", "start_pos": 253669601, "end_pos": 253668096, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091285.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091285.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060105.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060105.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNK1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 502, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNK1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNK1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 60, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 379, "end_pos": 381 }, { "start_pos": 446, "end_pos": 448 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNL2-1", "uniprot_ac": "A0A5G2QNL2", "uniprot_id": "A0A5G2QNL2_PIG", "mass": { "chemical_mass": 65706.0, "monoisotopic_mass": 65706.0 }, "refseq": { "ac": "XP_001927821", "name": "zinc finger and BTB domain-containing protein 22", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927821" }, "gene_names": [ { "name": "ZBTB22", "type": "recommended", "evidence": [ { "id": "A0A5G2QNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ] }, { "name": "ZBTB22", "type": "synonym", "evidence": [ { "id": "XP_001927821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927821" } ] } ], "protein_names": [ { "name": "Zinc finger and BTB domain-containing protein 22", "type": "recommended", "evidence": [ { "id": "A0A5G2QNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 297", "type": "synonym", "evidence": [ { "id": "A0A5G2QNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and BTB domain-containing protein 22", "type": "synonym", "evidence": [ { "id": "XP_001927821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927821" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZBTB22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2", "locus": { "chromosome": "7", "start_pos": 29673027, "end_pos": 29675593, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000054523", "url": "https://www.ensembl.org/id/ENSSSCG00000054523" } ] } } ], "crossref": [ { "id": "A0A5G2QNL2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001507", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001507", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18210", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18210", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157038", "url": "https://www.ncbi.nlm.nih.gov/gene/100157038", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157038", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157038", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNL2", "url": "https://www.orthodb.org/?gene=A0A5G2QNL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927821", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSPMSPGGAALPLPLSLAPPPLPLPAAAVVHVSFPEVTSALLESLNQQRLQGQLCDVSIRVQGREFRAHRAVLAASSPYFHDQVLLKGMTSISLPSVMDPGAFETVLASAYTGRLSMAAADIVNFLTVGSVLQMWHIVDKCTELLREGRASATTTTVTTAAATSVTVPGAGVPPGSGGSVAPAAVGSVRSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAASAVGSGERRGGGPVFPAPVVGSGGATSGKLLLEADELCDDGGDGRGAVVPGAGLRRPVYAPPSIVPQKHWVYVKRGGTCPAPAPLAPQDPDLEEDEEEEDLVLTCEDDEDEELGGGSHVPPGGEPETTLSISDVRTLSEPPDKGEEQVNFCESSNDFGPYESGGPGGGLEDSGGPTPSSYAPSHPPRPLLPLDMQGNQILVFPSSSSTSSSSSQAPGQPPGNQTEHGAVTLGGASAGALGMPGGTGGTPGGTGSGDGNKIFLCHCGKAFSHKSMRDRHVNMHLNLRPFDCPVCNKKFKMKHHLTEHMKTHTGLKPYECGVCAKKFMWRDSFMRHRGHCERRHRLGGGGAGAGAGAGPGGPTGPAVQPKRESPGRGSGDEASGTTPPPSRRVWSPPSVHKVEMGFGGGGGAN", "length": 639, "header": "tr|A0A5G2QNL2-1|A0A5G2QNL2_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 22 OS=Sus scrofa OX=9823 GN=ZBTB22 PE=3 SV=1 CANONICAL=A0A5G2QNL2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2/entry", "sequence": { "sequence": "MEPSPMSPGGAALPLPLSLAPPPLPLPAAAVVHVSFPEVTSALLESLNQQRLQGQLCDVSIRVQGREFRAHRAVLAASSPYFHDQVLLKGMTSISLPSVMDPGAFETVLASAYTGRLSMAAADIVNFLTVGSVLQMWHIVDKCTELLREGRASATTTTVTTAAATSVTVPGAGVPPGSGGSVAPAAVGSVRSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAASAVGSGERRGGGPVFPAPVVGSGGATSGKLLLEADELCDDGGDGRGAVVPGAGLRRPVYAPPSIVPQKHWVYVKRGGTCPAPAPLAPQDPDLEEDEEEEDLVLTCEDDEDEELGGGSHVPPGGEPETTLSISDVRTLSEPPDKGEEQVNFCESSNDFGPYESGGPGGGLEDSGGPTPSSYAPSHPPRPLLPLDMQGNQILVFPSSSSTSSSSSQAPGQPPGNQTEHGAVTLGGASAGALGMPGGTGGTPGGTGSGDGNKIFLCHCGKAFSHKSMRDRHVNMHLNLRPFDCPVCNKKFKMKHHLTEHMKTHTGLKPYECGVCAKKFMWRDSFMRHRGHCERRHRLGGGGAGAGAGAGPGGPTGPAVQPKRESPGRGSGDEASGTTPPPSRRVWSPPSVHKVEMGFGGGGGAN", "length": 639, "header": "tr|A0A5G2QNL2-1|A0A5G2QNL2_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 22 OS=Sus scrofa OX=9823 GN=ZBTB22 PE=3 SV=1 CANONICAL=A0A5G2QNL2-1" }, "locus": { "chromosome": "7", "start_pos": 29675525, "end_pos": 29673609, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071285.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071285.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066274.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066274.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 404, "start_aa": "Thr", "end_pos": 404, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr404", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 476, "start_aa": "Thr", "end_pos": 476, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr476", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 589, "start_aa": "Thr", "end_pos": 589, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr589", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157038", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157038", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 639, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 121, "start_aa": "Cys", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QNL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNL2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 489, "end_pos": 515, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 404, 476, 589 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 450, "end_pos": 452 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNM1-1", "uniprot_ac": "A0A5G2QNM1", "uniprot_id": "A0A5G2QNM1_PIG", "mass": { "chemical_mass": 99702.0, "monoisotopic_mass": 99702.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QNM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QNM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045209", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045209", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNTKDPESPKQS", "length": 859, "header": "tr|A0A5G2QNM1-1|A0A5G2QNM1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNM1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNTKDPESPKQS", "length": 859, "header": "tr|A0A5G2QNM1-1|A0A5G2QNM1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNM1-1" }, "locus": { "chromosome": "6", "start_pos": 111776398, "end_pos": 111773822, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083125.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083125.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063683.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063683.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNM1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 859, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNM1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNM1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNP1-1", "uniprot_ac": "A0A5G2QNP1", "uniprot_id": "A0A5G2QNP1_PIG", "mass": { "chemical_mass": 79542.0, "monoisotopic_mass": 79542.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QNP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QNP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNP1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050338", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050338", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2QNP1-1|A0A5G2QNP1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNP1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1/entry", "sequence": { "sequence": "MIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 679, "header": "tr|A0A5G2QNP1-1|A0A5G2QNP1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNP1-1" }, "locus": { "chromosome": "1", "start_pos": 154604808, "end_pos": 154602772, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076605.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076605.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063703.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNP1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 679, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNP1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNP1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNP1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 179, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 472, "end_pos": 474 }, { "start_pos": 529, "end_pos": 531 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNQ5-1", "uniprot_ac": "A0A5G2QNQ5", "uniprot_id": "A0A5G2QNQ5_PIG", "mass": { "chemical_mass": 52158.0, "monoisotopic_mass": 52158.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Nesprin-1", "type": "recommended", "evidence": [ { "id": "A0A5G2QNQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNQ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNQ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049158", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049158", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR14514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14514:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QNQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGGFTFLVFVFDSMLSCVGVSFPFKSMFAFSLQCFQSLQEKVKQDGKVVKQEVKEREVVETQINSVKSWVQETKEYLGNPTIEIDAQLEELKVLLTETAHHRQNMEKMAEEQKNKYLVALDLGTIHDQIQDKVKEVEQSKAMSQEFSRQIQKIAKDLTTILTKLRAKTDDLVQLLGEELDGCNLKLMELDEAIQKFSEQNGQLGKPLAKKIGKLTELHQQTVRQAENRISKLSQAAFHLEEYNEMLGLILKWIERAKVLVHGKIVWNSASQLREQYISHQTMLEESEEIHNDLEAMAEKLQALDSVYLTEKMSQQVVDLGRETEELRQMIKIRLQNLHDAAKDMKKFETELRNLQVALEQAQTTLTSPEVGRLSLKEQLSHRQHLLSEMESLKPKVQAVQICQSALRIPEDAVTSLPLCHAALRLQEEASRLQHTAIQQCNIMQAPTELFSIHQ", "length": 455, "header": "tr|A0A5G2QNQ5-1|A0A5G2QNQ5_PIG Isoform 1 of Nesprin-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNQ5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5/entry", "sequence": { "sequence": "MIGGFTFLVFVFDSMLSCVGVSFPFKSMFAFSLQCFQSLQEKVKQDGKVVKQEVKEREVVETQINSVKSWVQETKEYLGNPTIEIDAQLEELKVLLTETAHHRQNMEKMAEEQKNKYLVALDLGTIHDQIQDKVKEVEQSKAMSQEFSRQIQKIAKDLTTILTKLRAKTDDLVQLLGEELDGCNLKLMELDEAIQKFSEQNGQLGKPLAKKIGKLTELHQQTVRQAENRISKLSQAAFHLEEYNEMLGLILKWIERAKVLVHGKIVWNSASQLREQYISHQTMLEESEEIHNDLEAMAEKLQALDSVYLTEKMSQQVVDLGRETEELRQMIKIRLQNLHDAAKDMKKFETELRNLQVALEQAQTTLTSPEVGRLSLKEQLSHRQHLLSEMESLKPKVQAVQICQSALRIPEDAVTSLPLCHAALRLQEEASRLQHTAIQQCNIMQAPTELFSIHQ", "length": 455, "header": "tr|A0A5G2QNQ5-1|A0A5G2QNQ5_PIG Isoform 1 of Nesprin-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNQ5-1" }, "locus": { "chromosome": "1", "start_pos": 14024469, "end_pos": 14014048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067578.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067578.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066319.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066319.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNQ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 455, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNQ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNQ5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNR3-1", "uniprot_ac": "A0A5G2QNR3", "uniprot_id": "A0A5G2QNR3_PIG", "mass": { "chemical_mass": 109045.0, "monoisotopic_mass": 109045.0 }, "refseq": { "ac": "XP_001928784", "name": "HAUS augmin-like complex subunit 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928784" }, "gene_names": [ { "name": "HAUS6", "type": "recommended", "evidence": [ { "id": "A0A5G2QNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ] }, { "name": "HAUS6", "type": "synonym", "evidence": [ { "id": "XP_001928784", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928784" } ] } ], "protein_names": [ { "name": "HAUS augmin like complex subunit 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3/entry#names_and_taxonomy" } ] }, { "name": "HAUS augmin-like complex subunit 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928784", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928784" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HAUS6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3", "locus": { "chromosome": "1", "start_pos": 203771138, "end_pos": 203720264, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005173", "url": "https://www.ensembl.org/id/ENSSSCG00000005173" } ] } } ], "crossref": [ { "id": "A0A5G2QNR3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005173", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005173", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153687", "url": "https://www.ncbi.nlm.nih.gov/gene/100153687", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153687", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153687", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNR3", "url": "https://www.orthodb.org/?gene=A0A5G2QNR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16151:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16151:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928784", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928784", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK70-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSACITSFEKEHLWMYLRALGFDPGPATIACGKIVSHTHLGVNMFDRLNRDAFQIVCYFLFQTLDQSLTKEVFKHCWPPFDKKSDTEFRKHCCEWLKKISAECGSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAIKYIETHSKNSSVHFMEAFNGKPQDLHRCIARCHVARNRFLQILQREDCVTRKYQENAQLSVKQVRDLRSECIGQQNQIKKMEPYDDQTNIQEKIQKVQSLWASVNETLMFLEEEREVVSSVLSLVNQYTLDGTNVAINIPRLLLEKIEKQMCQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYEHCQADQARLTIDLHFLEKETKFQRERLSDLKHMRYKIKEDLTTIRHSIVEQEGEWHKKWKEFLGLSPFSLIKGWTPAVDLLPPMSPLSFDPASEEVYAKSILLQYPASLPDTPKQYKQENDCRRASDVLGTKCDLAKSPTSFLLQAISSSDRNSVTLLEKDMKVRTPREKNEIISKKITEFETEESSSLNIAKNTDGSAFGGSLPAEKSDPFQKEQDHLVEEVARAVLSDSPQPSKGEVKLEELIDSLVSNPFLTRNQIPRTPENLISEIRSSWRKAVEVEDTKSTEPIQMDTEHREVLPESFPEVHNQGEFSMASYFSATTMSNSSHSHSPEEKVISDRLKCLPQKPVVSSHRGEPTTQNMSDLLNKEIICKQDLECTALQNKLLETSQIGTFSPIVGNRRDVIDDSEKECIKISDHSKASYKDLSMHKSMLWNSFQISSGISSNFKVSDFGILHETLPEDDGHLSLNSSSSTEASFKLEPNSPMHSGIFPEDVVGERQTTPELDFNLQAICSGYEALKKTLSKQREEIYLSNSETLERHEQELSLSPQNMQADDMLNFLGTHDLHTDYTKPSLRMSFGERKQSLSPLIKFSPVEQRLRTTIPCSLGELLPNLTEEEVLNKSLNARESPFDLKK", "length": 956, "header": "tr|A0A5G2QNR3-1|A0A5G2QNR3_PIG Isoform 1 of HAUS augmin like complex subunit 6 OS=Sus scrofa OX=9823 GN=HAUS6 PE=4 SV=1 CANONICAL=A0A5G2QNR3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3/entry", "sequence": { "sequence": "MSSACITSFEKEHLWMYLRALGFDPGPATIACGKIVSHTHLGVNMFDRLNRDAFQIVCYFLFQTLDQSLTKEVFKHCWPPFDKKSDTEFRKHCCEWLKKISAECGSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAIKYIETHSKNSSVHFMEAFNGKPQDLHRCIARCHVARNRFLQILQREDCVTRKYQENAQLSVKQVRDLRSECIGQQNQIKKMEPYDDQTNIQEKIQKVQSLWASVNETLMFLEEEREVVSSVLSLVNQYTLDGTNVAINIPRLLLEKIEKQMCQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYEHCQADQARLTIDLHFLEKETKFQRERLSDLKHMRYKIKEDLTTIRHSIVEQEGEWHKKWKEFLGLSPFSLIKGWTPAVDLLPPMSPLSFDPASEEVYAKSILLQYPASLPDTPKQYKQENDCRRASDVLGTKCDLAKSPTSFLLQAISSSDRNSVTLLEKDMKVRTPREKNEIISKKITEFETEESSSLNIAKNTDGSAFGGSLPAEKSDPFQKEQDHLVEEVARAVLSDSPQPSKGEVKLEELIDSLVSNPFLTRNQIPRTPENLISEIRSSWRKAVEVEDTKSTEPIQMDTEHREVLPESFPEVHNQGEFSMASYFSATTMSNSSHSHSPEEKVISDRLKCLPQKPVVSSHRGEPTTQNMSDLLNKEIICKQDLECTALQNKLLETSQIGTFSPIVGNRRDVIDDSEKECIKISDHSKASYKDLSMHKSMLWNSFQISSGISSNFKVSDFGILHETLPEDDGHLSLNSSSSTEASFKLEPNSPMHSGIFPEDVVGERQTTPELDFNLQAICSGYEALKKTLSKQREEIYLSNSETLERHEQELSLSPQNMQADDMLNFLGTHDLHTDYTKPSLRMSFGERKQSLSPLIKFSPVEQRLRTTIPCSLGELLPNLTEEEVLNKSLNARESPFDLKK", "length": 956, "header": "tr|A0A5G2QNR3-1|A0A5G2QNR3_PIG Isoform 1 of HAUS augmin like complex subunit 6 OS=Sus scrofa OX=9823 GN=HAUS6 PE=4 SV=1 CANONICAL=A0A5G2QNR3-1" }, "locus": { "chromosome": "1", "start_pos": 203767248, "end_pos": 203720608, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083019.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083019.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059942.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059942.1" } ] } }, { "isoform_ac": "A0A5G2REW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REW7/entry", "sequence": { "sequence": "MSSACITSFEKEHLWMYLRALGFDPGPATIACGKIVSHTHLGVNMFDRLNRDAFQIVCYFLFQTLDQSLTKEVFKHCWPPFDKKSDTEFRKHCCEWLKKISAECGSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAIKYIETHSKNSSVHFMEAFNGKPQDLHRCIARCHVARNRFLQILQREDCVTRKYQENAQLSVKQVRDLRSECIGQQNQIKKMEPYDDQTNIQEKIQKVQSLWASVNETLMFLEEEREVVSSVLSLVNQYTLDGTNVAINIPRLLLEKIEKQMCQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYEHCQADQARLTIDLHFLEKETKFQRERLSDLKHMRYKIKEDLTTIRHSIVEQEGEWHKKWKEFLGLSPFSLIKGWTPAVDLLPPMSPLSFDPASEEVYAKSILLQYPASLPDTPKQYKQENDCRRASDVLGTKCDLAKSPTSFLLQAISSSDRNSVTLLEKDMKVRTPREKNEIISKKITEFETEESSSLNIAKNTDGSAFGGSLPAEKSDPFQKEQDHLVEEVARAVLSDSPQPSKGEVKLEELIDSLVSNPFLTRNQIPRTPENLISEIRSSWRKAVEVEDTKSTEPIQMDTEHREVLPESFPEVHNQGEFSMASYFSATTMSNSSHSHSPEEKVISDRLKCLPQKPVVSSHRGEPTTQNMSDLLNKEIICKQDLECTALQNKLLETSQIGTFSPIVGNRRDVIDDSEKECIKISDHSKASYKDLSMHKSMLWNSFQISSGISSNFKVSDFGILHETLPEDDGHLSLNSSSSTEASFKLEPNSPMHSGIFPEDVVGERQTTPELDFNLQAICSGYEALKKTLSKQREEIYLSNSETLERHEQELSLSPQNMQADDMLNFLGTHDLHTDYTKPSLRMSFGERKQSLSPLIKFSPLY", "length": 917, "header": "tr|A0A5G2REW7-1|A0A5G2REW7_PIG Computationally mapped isoform of HAUS augmin like complex subunit 6 OS=Sus scrofa OX=9823 GN=HAUS6 PE=4 SV=2 CANONICAL=A0A5G2QNR3-1" }, "locus": { "chromosome": "1", "start_pos": 203770525, "end_pos": 203720608, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087142.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087142.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069472.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069472.2" } ] } }, { "isoform_ac": "A0A5G2RK70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK70/entry", "sequence": { "sequence": "MSSACITSFEKEHLWMYLRALGFDPGPATIACGKIVSHTHLGVNMFDRLNRDAFQIVCYFLFQTLDQSLTKEVFKHCWPPFDKKSDTEFRKHCCEWLKKISAECGSSFPQVVGSLFLSPGGPKFIHLMYHFARFVAIKYIETHSKNSSVHFMEAFNGKPQDLHRCIARCHVARNRFLQILQREDCVTRKYQENAQLSVKQVRDLRSECIGQQNQIKKMEPYDDQTNIQEKIQKVQSLWASVNETLMFLEEEREVVSSVLSLVNQYTLDGTNVAINIPRLLLEKIEKQMCQLHIGNVYEAGKLNLLTVIQLLNEVLKVMKYEHCQADQARLTIDLHFLEKETKFQRERLSDLKHMRYKIKEDLTTIRHSIVEQEGEWHKKWKEFLGLSPFSLIKGWTPAVDLLPPMSPLSFDPASEEVYAKSILLQYPASLPDTPKQYKQENDCRRASDVLGTKCDLAKSPTSFLLQAISSSDRNSVTLLEKDMKVRTPREKNEIISKKITEFETEESSSLNIAKNTDGSAFGGSLPAEKSDPFQKEQDHLVEEVARAVLSDSPQPSKGEVKLEELIDSLVSNPFLTRNQIPRTPENLISEIRSSWRKAVEVEDTKSTEPIQMDTEHREVLPESFPEVHNQGEFSMASYFSATTMSNSSHSHSPEEKVISDRLKCLPQKPVVSSHRGEPTTQNMSDLLNKEIICKQDLECTALQNKLLETSQIGTFSPIVGNRRDVIDDSEKECIKISDHSKASYKDLSMHKSMLWNSFQISSGISSNFKVSDFGILHETLPEDDGHLSLNSSSSTEASFKLEPNSPMHSGIFPEDVVGERQTTPELDFNLQAICSGYEALKKTLSKQREEIYLSNSETLERHEQELSLSPQNMQADDMLNFLGTHDLHTDYTKPSLRMSFGERKQSLSPLIKFSPVEQRLRTTIPCSLGELLPNLTECYMILIVNMTKCALIPSTRTRRVSSSFL", "length": 965, "header": "tr|A0A5G2RK70-1|A0A5G2RK70_PIG Computationally mapped isoform of HAUS augmin like complex subunit 6 OS=Sus scrofa OX=9823 GN=HAUS6 PE=4 SV=1 CANONICAL=A0A5G2QNR3-1" }, "locus": { "chromosome": "1", "start_pos": 203765409, "end_pos": 203720608, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080904.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080904.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072435.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072435.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153687", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153687", "resource": "KEGG Pathway" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "spindle assembly", "id": "GO:0051225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051225", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "HAUS complex", "id": "GO:0070652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070652", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 646, "end_pos": 648, "annotation": "n_glycosylation_sequon" }, { "start_pos": 682, "end_pos": 684, "annotation": "n_glycosylation_sequon" }, { "start_pos": 790, "end_pos": 792, "annotation": "n_glycosylation_sequon" }, { "start_pos": 934, "end_pos": 936, "annotation": "n_glycosylation_sequon" }, { "start_pos": 942, "end_pos": 944, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 956, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNR3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR3" }, { "id": "PF14661", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14661" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HAUS augmin-like complex subunit 6 N-terminal", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 239, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 242, "end_pos": 244 }, { "start_pos": 646, "end_pos": 648 }, { "start_pos": 682, "end_pos": 684 }, { "start_pos": 790, "end_pos": 792 }, { "start_pos": 934, "end_pos": 936 }, { "start_pos": 942, "end_pos": 944 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNR9-1", "uniprot_ac": "A0A5G2QNR9", "uniprot_id": "A0A5G2QNR9_PIG", "mass": { "chemical_mass": 41264.0, "monoisotopic_mass": 41264.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Protein FAM170A", "type": "recommended", "evidence": [ { "id": "A0A5G2QNR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNR9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041876", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041876", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33517", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33517", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33517:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33517:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHQKACISEAQNASSCCCTVFSSGCTMGVSKLHEYDLPSGYSWEYNALVPEARSGASESEYFSCDSSFSNPSCAEFWKTPEDTSQPESYVEVPVCSQTPGEKSSDSEYFSCVSSPCKLIFADEDGIHPMHQDDSYLRSPEKPLPQDLEQWETSSPFPQVSFPFNLVNSNESFVSSIFMKKKRVMKIYYMHVQMKKGVAILWETEKGLEPPSKKIKIEEMTYPEKIHMAFTLPHMSTKEFLTDSEFSWDSKVQEEREETDSPAEPTVLEECSRAKTPEWLVALDSGFRCMGCCRVFPSLDILQEHVEHGVKEGFSCHAFHLALAWLKSKGSKKGKKKRRKKTKIKKTTSGHQNEKHFGMKTSSCK", "length": 364, "header": "tr|A0A5G2QNR9-1|A0A5G2QNR9_PIG Isoform 1 of Protein FAM170A OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNR9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9/entry", "sequence": { "sequence": "MHQKACISEAQNASSCCCTVFSSGCTMGVSKLHEYDLPSGYSWEYNALVPEARSGASESEYFSCDSSFSNPSCAEFWKTPEDTSQPESYVEVPVCSQTPGEKSSDSEYFSCVSSPCKLIFADEDGIHPMHQDDSYLRSPEKPLPQDLEQWETSSPFPQVSFPFNLVNSNESFVSSIFMKKKRVMKIYYMHVQMKKGVAILWETEKGLEPPSKKIKIEEMTYPEKIHMAFTLPHMSTKEFLTDSEFSWDSKVQEEREETDSPAEPTVLEECSRAKTPEWLVALDSGFRCMGCCRVFPSLDILQEHVEHGVKEGFSCHAFHLALAWLKSKGSKKGKKKRRKKTKIKKTTSGHQNEKHFGMKTSSCK", "length": 364, "header": "tr|A0A5G2QNR9-1|A0A5G2QNR9_PIG Isoform 1 of Protein FAM170A OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QNR9-1" }, "locus": { "chromosome": "2", "start_pos": 124730765, "end_pos": 124651383, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072325.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072325.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066538.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066538.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fertilization", "id": "GO:0009566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009566", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNR9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 169, "end_pos": 171 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNS2-1", "uniprot_ac": "A0A5G2QNS2", "uniprot_id": "A0A5G2QNS2_PIG", "mass": { "chemical_mass": 25113.0, "monoisotopic_mass": 25113.0 }, "refseq": {}, "gene_names": [ { "name": "ATG10", "type": "recommended", "evidence": [ { "id": "A0A5G2QNS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ] } ], "protein_names": [ { "name": "Ubiquitin-like-conjugating enzyme ATG10", "type": "recommended", "evidence": [ { "id": "A0A5G2QNS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2/entry#names_and_taxonomy" } ] }, { "name": "Autophagy-related protein 10", "type": "synonym", "evidence": [ { "id": "A0A5G2QNS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E2-like enzyme involved in autophagy. Acts as an E2-like enzyme that catalyzes the conjugation of ATG12 to ATG5. ATG12 conjugation to ATG5 is required for autophagy. Likely serves as an ATG5-recognition molecule. Not involved in ATG12 conjugation to ATG3. Plays a role in adenovirus-mediated cell lysis.", "evidence": [ { "database": "UniProtKB", "id": "I3LC40", "url": "https://www.uniprot.org/uniprotkb/I3LC40#function" }, { "database": "UniProtKB", "id": "ARBA00054759", "url": "https://www.uniprot.org/uniprotkb/ARBA00054759#function" }, { "database": "UniProtKB", "id": "A0A8W4FDM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM2#function" }, { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATG10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2", "locus": { "chromosome": "2", "start_pos": 90666196, "end_pos": 90437027, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025210", "url": "https://www.ensembl.org/id/ENSSSCG00000025210" } ] } } ], "crossref": [ { "id": "A0A5G2QNS2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025210", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025210", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100462744", "url": "https://www.ncbi.nlm.nih.gov/gene/100462744", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100462744", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100462744", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WKTSKDC", "url": "https://omabrowser.org/oma/group/WKTSKDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LC40", "url": "https://www.orthodb.org/?gene=I3LC40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14957:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14957:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03987", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03987", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1632852", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LC40", "url": "https://www.uniprot.org/uniprotkb/I3LC40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LC40-1", "url": "https://www.uniprot.org/uniprotkb/I3LC40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEDEFFGEKTFQRCCAEFIKHSQQIGDGWEWRTSKDCSDGYMCKTHFQVKNGTAVSHPETSAHVQTCLPMEEALEPPLDDSEVTETDTATEVIKYEYHVLYSCSYQVPVLYFRASFLDGKPLALKDLWERVHECYKTRLLQGPWDTITQQEHPILGQPFFVLHPCKTSEFMTPVFKSSQKTKRNVNYITSWLSIVGPAVGLNLPLSYARAASQDANVNG", "length": 220, "header": "tr|A0A5G2QNS2-1|A0A5G2QNS2_PIG Isoform 1 of Ubiquitin-like-conjugating enzyme ATG10 OS=Sus scrofa OX=9823 GN=ATG10 PE=3 SV=1 CANONICAL=A0A5G2QNS2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2/entry", "sequence": { "sequence": "MEEDEFFGEKTFQRCCAEFIKHSQQIGDGWEWRTSKDCSDGYMCKTHFQVKNGTAVSHPETSAHVQTCLPMEEALEPPLDDSEVTETDTATEVIKYEYHVLYSCSYQVPVLYFRASFLDGKPLALKDLWERVHECYKTRLLQGPWDTITQQEHPILGQPFFVLHPCKTSEFMTPVFKSSQKTKRNVNYITSWLSIVGPAVGLNLPLSYARAASQDANVNG", "length": 220, "header": "tr|A0A5G2QNS2-1|A0A5G2QNS2_PIG Isoform 1 of Ubiquitin-like-conjugating enzyme ATG10 OS=Sus scrofa OX=9823 GN=ATG10 PE=3 SV=1 CANONICAL=A0A5G2QNS2-1" }, "locus": { "chromosome": "2", "start_pos": 90663593, "end_pos": 90452603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080336.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080336.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063738.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063738.1" } ] } }, { "isoform_ac": "A0A8W4FDM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM2/entry", "sequence": { "sequence": "MEEDEFFGEKTFQRCCAEFIKHSQQIGDGWEWRTSKDCSDGYMCKTHFQVKNGTAVSHPETSAHVQTCLPMEEALEPPLDDSEVTETDTATEVIKYEYHVLYSCSYQVPVLYFRASFLDGKPLALKDLWERVHECYKTRLLQGPWDTITQQVGEYFHCSICDSSLLLIFSFFSF", "length": 174, "header": "tr|A0A8W4FDM2-1|A0A8W4FDM2_PIG Computationally mapped isoform of Ubiquitin-like-conjugating enzyme ATG10 OS=Sus scrofa OX=9823 GN=ATG10 PE=3 SV=1 CANONICAL=A0A5G2QNS2-1" }, "locus": { "chromosome": "2", "start_pos": 90594193, "end_pos": 90452603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106461.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106461.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076959.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076959.1" } ] } }, { "isoform_ac": "I3LC40-1", "url": "https://www.uniprot.org/uniprotkb/I3LC40/entry", "sequence": { "sequence": "MSFSMEEDEFFGEKTFQRCCAEFIKHSQQIGDGWEWRTSKDCSDGYMCKTHFQVKNGTAVSHPETSAHVQTCLPMEEALEPPLDDSEVTETDTATEVIKYEYHVLYSCSYQVPVLYFRASFLDGKPLALKDLWERVHECYKTRLLQGPWDTITQQEHPILGQPFFVLHPCKTSEFMTPVFKSSQKTKRNVNYITSWLSIVGPAVGLNLPLSYARAASQDA", "length": 220, "header": "tr|I3LC40-1|I3LC40_PIG Computationally mapped isoform of Ubiquitin-like-conjugating enzyme ATG10 OS=Sus scrofa OX=9823 GN=ATG10 PE=3 SV=4 CANONICAL=A0A5G2QNS2-1" }, "locus": { "chromosome": "2", "start_pos": 90663578, "end_pos": 90452591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024808.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024808.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021613.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021613.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100462744", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100462744", "resource": "KEGG Pathway" }, { "id": "R-SSC-1632852", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "resource": "Reactome", "description": "Macroautophagy" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FFF0-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG10", "gene_name": "Atg10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEDEFFGEKSFQHYCAEFIKHSQQIGDGWEWKTAKDCSDGYMCKTQFQIKNGTTTSHRGTPASVHTCLPTEENLELTVDDSEVMESAAASQVIKYEYHVVYSCSYQVPVLYFRASFLDGRPLALKDIWEGVHECYKTRLLQGPWDTITQQWRTCLGLFHSVGCAPVPALLRELIEHPILGQPFFVLHPCKTNEFMTAVLKNPQKINRNVNYITSWLSIMGPVVGLNLPLSYAKATSQDE", "length": 239 }, "evidence": [ { "id": "A0A5G2QNS2", "url": "https://omabrowser.org/oma/group/A0A5G2QNS2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LT34-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG10", "gene_name": "Atg10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPFLPATGPLHQPFSAWDCFPLAKALLGCLLHFGLLQLYFPSTVSCCLRPFFPHLPSQCFFYSSLQCPWQYHMIVRKTSRVWCSPICLMTYSFSSSLVPESLACFDIYEGLRKAWFSCLSRKPGTVWRCQEGGLGSSRVLPGKECSDGYMCKTQFQIKKETPTPHRETPASVHTCLPTEENLELPVDDSEAVGPAAAAVIRQEYHVLYSCSYQVPVLYFRASFLDGRPLALEDIWEGVHECYKLRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTAVLKNSQKINRNVNYITSWLSIVGPVVGLNLPLSYAKATSQSE", "length": 322 }, "evidence": [ { "id": "A0A5G2QNS2", "url": "https://omabrowser.org/oma/group/A0A5G2QNS2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R1P4-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG10", "gene_name": "Atg10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDEFFGEKSFQHYCAEFIRHSQQIGDGWEWRTAKECSDGYMCKTQFRIKNEASTPHVGTPASVLTCLPTEENLELPMDDSEVTRPAAVAEVIKHEYHVLYSCSYQVPVLYFRASFLDGRPLALEDIWEGVHECYKPRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTAVLKNSQKINRNVNYITSWLSLVGPVVGLNLPLSYAKATSQSE", "length": 215 }, "evidence": [ { "id": "A0A5G2QNS2", "url": "https://omabrowser.org/oma/group/A0A5G2QNS2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0Y0-1", "protein_name": "Ubiquitin-like-conjugating enzyme ATG10", "gene_name": "ATG10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLGASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP", "length": 220 }, "evidence": [ { "id": "A0A5G2QNS2", "url": "https://omabrowser.org/oma/group/A0A5G2QNS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" }, { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" }, { "name": "protein modification by small protein conjugation", "id": "GO:0032446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032446", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" }, { "name": "ER overload response", "id": "GO:0006983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "Atg12 conjugating enzyme activity", "id": "GO:0061651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061651", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 220, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNS2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 52, "end_pos": 54 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNU6-1", "uniprot_ac": "A0A5G2QNU6", "uniprot_id": "A0A5G2QNU6_PIG", "mass": { "chemical_mass": 10552.0, "monoisotopic_mass": 10552.0 }, "refseq": {}, "gene_names": [ { "name": "P3R3URF", "type": "recommended", "evidence": [ { "id": "A0A5G2QNU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6" } ] } ], "protein_names": [ { "name": "PIK3R3 upstream open reading frame", "type": "synonym", "evidence": [ { "id": "A0A5G2QNU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "P3R3URF", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6", "locus": { "chromosome": "6", "start_pos": 165233656, "end_pos": 165232844, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000050383", "url": "https://www.ensembl.org/id/ENSSSCG00000050383" } ] } } ], "crossref": [ { "id": "A0A5G2QNU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050383", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050383", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QNU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPAQLVRAPRPRGLPSPYRRPGIGWPRPRFPRMFKCSRRRYRQPQGPDATTAAPHLAPVATDINTGHTATTRVWILPPQVLRHLCPPGSFLII", "length": 94, "header": "tr|A0A5G2QNU6-1|A0A5G2QNU6_PIG Isoform 1 of PIK3R3 upstream open reading frame OS=Sus scrofa OX=9823 GN=P3R3URF PE=4 SV=1 CANONICAL=A0A5G2QNU6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6/entry", "sequence": { "sequence": "MGPAQLVRAPRPRGLPSPYRRPGIGWPRPRFPRMFKCSRRRYRQPQGPDATTAAPHLAPVATDINTGHTATTRVWILPPQVLRHLCPPGSFLII", "length": 94, "header": "tr|A0A5G2QNU6-1|A0A5G2QNU6_PIG Isoform 1 of PIK3R3 upstream open reading frame OS=Sus scrofa OX=9823 GN=P3R3URF PE=4 SV=1 CANONICAL=A0A5G2QNU6-1" }, "locus": { "chromosome": "6", "start_pos": 165233409, "end_pos": 165232844, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069484.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069484.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066563.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066563.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 94, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNU6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNV8-1", "uniprot_ac": "A0A5G2QNV8", "uniprot_id": "A0A5G2QNV8_PIG", "mass": { "chemical_mass": 103729.0, "monoisotopic_mass": 103729.0 }, "refseq": { "ac": "XP_020942074", "name": "probable fibrosin-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942074" }, "gene_names": [ { "name": "FBRS", "type": "recommended", "evidence": [ { "id": "A0A5G2QNV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8" } ] }, { "name": "FBRS", "type": "synonym", "evidence": [ { "id": "XP_020942074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942074" } ] } ], "protein_names": [ { "name": "Fibrosin", "type": "synonym", "evidence": [ { "id": "A0A5G2QNV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8/entry#names_and_taxonomy" } ] }, { "name": "probable fibrosin-1", "type": "synonym", "evidence": [ { "id": "XP_020942074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942074" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBRS", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8", "locus": { "chromosome": "3", "start_pos": 17731764, "end_pos": 17742921, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025794", "url": "https://www.ensembl.org/id/ENSSSCG00000025794" } ] } } ], "crossref": [ { "id": "A0A5G2QNV8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025794", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025794", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102159616", "url": "https://www.ncbi.nlm.nih.gov/gene/102159616", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102159616", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159616", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNV8", "url": "https://www.orthodb.org/?gene=A0A5G2QNV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14429", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14429", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14429:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14429:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RL27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RL27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METAAAAAPGPGWAAEGERRRRRCSRRDRDREQRRRRGPGGDAPRALLAAPRGSSSSSSPPPPARPWSSASSGERPGGPRRRRPRPRPRPPRPRARKRPAGSGSRGEEEEEEEEGGADDGEAEEEPEEEEEEEEDLIDGFAIASFASLEALQKDASLQPPERLEHRLKHSGKRKRGGSSGATGEPGDSSDREPGRPSGDRARKWPNKRRRKEASSRHSLEAGYICDAESDLDERVSDDDLDPSFTVSTSKASGPHGAFNGNCEAKLSVVPKVSGLERSQEQPPGPDPLLVPFPPKEPPPPPAPRPPVSPPAPLPAAPSLPPPPQPQLQLRVSPFGLRTSPYGSSLDLSTGSSSRPPPKAPAPPVAQPPPSSSSSSSSSSSASSSSAQLTHRPPTPSLPLPLSTHSFPAPGLRPPPPPHHPSLFSPGPTLPPPPPLLQVPGHPGASAANALSEQDLIGQDLNSRYLNAQGGPEVVGAGGSARPLAFQFHQHNHQHQHTHQHTHQHFTPYPPGLLPPHGPHMFEKYPGKMEGLFRHNPYTAFPPAVPGLPPGLPPAVSFGSLQGAFQPKSTNPELPPRLGPVPSGLPQKGTQIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSHKLDFRNDLLPCLPGPYGALPPGQELSHPAASLFTATGAVHAAANPFTAAPGAHGPFLSPSTHIDPFGRPTSFASLAALSNGAFGGLGSPTFNSGAVFAQKESPGAPPAFASPPDPWGRLHRSPLAFPAWVRPPEAARTPGSDKERPVERREPSITKEEKDRDLPFSRPQLRVSPATPKARAGEEGARPAKESVRVKEERKEEAAAAAAAAAAAAAAAAAAAATTGPQGLHLLFERPRPPPFLGPSPPERCAGFLEPTWLAGPPRLGRPPRFYEAGEELTGPGAVAAARLYGLEPAHPLLYSRLAPPPPPTAAPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRAPGPARADR", "length": 982, "header": "tr|A0A5G2QNV8-1|A0A5G2QNV8_PIG Isoform 1 of Fibrosin OS=Sus scrofa OX=9823 GN=FBRS PE=4 SV=1 CANONICAL=A0A5G2QNV8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8/entry", "sequence": { "sequence": "METAAAAAPGPGWAAEGERRRRRCSRRDRDREQRRRRGPGGDAPRALLAAPRGSSSSSSPPPPARPWSSASSGERPGGPRRRRPRPRPRPPRPRARKRPAGSGSRGEEEEEEEEGGADDGEAEEEPEEEEEEEEDLIDGFAIASFASLEALQKDASLQPPERLEHRLKHSGKRKRGGSSGATGEPGDSSDREPGRPSGDRARKWPNKRRRKEASSRHSLEAGYICDAESDLDERVSDDDLDPSFTVSTSKASGPHGAFNGNCEAKLSVVPKVSGLERSQEQPPGPDPLLVPFPPKEPPPPPAPRPPVSPPAPLPAAPSLPPPPQPQLQLRVSPFGLRTSPYGSSLDLSTGSSSRPPPKAPAPPVAQPPPSSSSSSSSSSSASSSSAQLTHRPPTPSLPLPLSTHSFPAPGLRPPPPPHHPSLFSPGPTLPPPPPLLQVPGHPGASAANALSEQDLIGQDLNSRYLNAQGGPEVVGAGGSARPLAFQFHQHNHQHQHTHQHTHQHFTPYPPGLLPPHGPHMFEKYPGKMEGLFRHNPYTAFPPAVPGLPPGLPPAVSFGSLQGAFQPKSTNPELPPRLGPVPSGLPQKGTQIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSHKLDFRNDLLPCLPGPYGALPPGQELSHPAASLFTATGAVHAAANPFTAAPGAHGPFLSPSTHIDPFGRPTSFASLAALSNGAFGGLGSPTFNSGAVFAQKESPGAPPAFASPPDPWGRLHRSPLAFPAWVRPPEAARTPGSDKERPVERREPSITKEEKDRDLPFSRPQLRVSPATPKARAGEEGARPAKESVRVKEERKEEAAAAAAAAAAAAAAAAAAAATTGPQGLHLLFERPRPPPFLGPSPPERCAGFLEPTWLAGPPRLGRPPRFYEAGEELTGPGAVAAARLYGLEPAHPLLYSRLAPPPPPTAAPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRAPGPARADR", "length": 982, "header": "tr|A0A5G2QNV8-1|A0A5G2QNV8_PIG Isoform 1 of Fibrosin OS=Sus scrofa OX=9823 GN=FBRS PE=4 SV=1 CANONICAL=A0A5G2QNV8-1" }, "locus": { "chromosome": "3", "start_pos": 17742722, "end_pos": 17732497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085041.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085041.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065745.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065745.1" } ] } }, { "isoform_ac": "A0A5G2RL27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RL27/entry", "sequence": { "sequence": "MFEKYPGKMEGLFRHNPYTAFPPAVPGLPPGLPPAVSFGSLQGAFQPKIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSHKLDFRNDLLPCLPGPYGALPPGQELSHPAASLFTATGAVHAAANPFTAAPGAHGPFLSPSTHIDPFGRPTSFASLAALSNGAFGGLGSPTFNSGAVFAQKESPGAPPAFASPPDPWGRLHRSPLAFPAWVRPPEAARTPGSDKERPVERREPSITKEEKDRDLPFSRPQLRVSPATPKARAGEEGARPAKESVRVKEERKEEAAAAAAAAAAAAAAAAAAAATTGPQGLHLLFERPRPPPFLGPSPPERCAGFLEPTWLAGPPRLGRPPRFYEAGEELTGPGAVAAARLYGLEPAHPLLYSRLAPPPPPTAAPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPRAPGPARADR", "length": 440, "header": "tr|A0A5G2RL27-1|A0A5G2RL27_PIG Computationally mapped isoform of Fibrosin OS=Sus scrofa OX=9823 GN=FBRS PE=4 SV=1 CANONICAL=A0A5G2QNV8-1" }, "locus": { "chromosome": "3", "start_pos": 17737283, "end_pos": 17732497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066590.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066590.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072973.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 938, "start_aa": "Thr", "end_pos": 938, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr938", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102159616", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159616", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 982, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNV8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 938 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNY2-1", "uniprot_ac": "A0A5G2QNY2", "uniprot_id": "A0A5G2QNY2_PIG", "mass": { "chemical_mass": 16633.0, "monoisotopic_mass": 16633.0 }, "refseq": { "ac": "NP_001116621", "name": "protegrin-1 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" }, "gene_names": [ { "name": "NPG1", "type": "recommended", "evidence": [ { "id": "A0A5G2QNY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ] }, { "name": "NPG1", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "NPG2", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "NPG5", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "PG-1", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "PG-2", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "PG-5", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] } ], "protein_names": [ { "name": "Protegrin 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QNY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2/entry#names_and_taxonomy" } ] }, { "name": "Protegrin-2", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "leukocyte antimicrobial peptide", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "neutrophil peptide 1", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "protegrin-1 precursor", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "protegrin-3", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "protegrin-4", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] }, { "name": "protegrin-5", "type": "synonym", "evidence": [ { "id": "NP_001116621", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ] } ], "function": [ { "annotation": "Analyzed the expression pattern of protegrins in 17 different pig tissues using RT-PCR, and developed an anti-(PG-1) polyclonal IgG. Western blot analysis using the antibody showed that protegrins are mainly present as prepropeptide forms in normal tissue", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" }, { "database": "PubMed", "id": "25264901", "url": "https://glygen.org/publication/PubMed/25264901" } ] }, { "annotation": "Despite the absence of stabilizing disulfide bridges CDP-1 shows broad-spectrum antibacterial activity and assumes beta-hairpin like structure in complex with LPS.", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" }, { "database": "PubMed", "id": "24997421", "url": "https://glygen.org/publication/PubMed/24997421" } ] }, { "annotation": "Further study suggested that protegrin-1 activates insulin-like growth factor 1 receptor (IGF1R) and through this receptor it modulates immune activity as well as cell migration. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" }, { "database": "PubMed", "id": "30324092", "url": "https://glygen.org/publication/PubMed/30324092" } ] }, { "annotation": "Transgenic Mice Overexpressing PG1 Display Corneal Opacity and Severe Inflammation in the Eye. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" }, { "database": "PubMed", "id": "33557346", "url": "https://glygen.org/publication/PubMed/33557346" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2", "locus": { "chromosome": "13", "start_pos": 30987871, "end_pos": 30986030, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000053313", "url": "https://www.ensembl.org/id/ENSSSCG00000053313" } ] } } ], "crossref": [ { "id": "A0A5G2QNY2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100144483", "url": "https://www.ncbi.nlm.nih.gov/gene/100144483", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100144483", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144483", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR10206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10206:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00666", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00666", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVNFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGVRGGGLCYCRRRFCVCVGRG", "length": 149, "header": "tr|A0A5G2QNY2-1|A0A5G2QNY2_PIG Isoform 1 of Protegrin 1 OS=Sus scrofa OX=9823 GN=NPG1 PE=3 SV=1 CANONICAL=A0A5G2QNY2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2/entry", "sequence": { "sequence": "METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVNFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGVRGGGLCYCRRRFCVCVGRG", "length": 149, "header": "tr|A0A5G2QNY2-1|A0A5G2QNY2_PIG Isoform 1 of Protegrin 1 OS=Sus scrofa OX=9823 GN=NPG1 PE=3 SV=1 CANONICAL=A0A5G2QNY2-1" }, "locus": { "chromosome": "13", "start_pos": 30987627, "end_pos": 30986030, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073391.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073391.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063793.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063793.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Cysteine deleted protegrin-1 (CDP-1): anti-bacterial activity, outer-membrane disruption and selectivity.", "journal": "Biochimica et biophysica acta", "date": "2014-10", "authors": "Mohanram Harini, Bhattacharjya Surajit", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ], "reference": [ { "type": "PubMed", "id": "24997421", "url": "https://glygen.org/publication/PubMed/24997421" } ] }, { "title": "Defining the genetic relationship of protegrin-related sequences and the in vivo expression of protegrins.", "journal": "The FEBS journal", "date": "2014-12", "authors": "Choi Min-Kyeung, Le Min Thong, Cho Hyesun, Soundrarajan Nagasundarapandian, Jeon Hyoim, Park Choi Kyu, Cha Se Yeoun, Kim Jin-Hoi, Seo Kunho, Park Chankyu", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ], "reference": [ { "type": "PubMed", "id": "25264901", "url": "https://glygen.org/publication/PubMed/25264901" } ] }, { "title": "Protegrin 1 Enhances Innate Cellular Defense via the Insulin-Like Growth Factor 1 Receptor Pathway.", "journal": "Frontiers in cellular and infection microbiology", "date": "2018", "authors": "Penney Jenna, Li Julang", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ], "reference": [ { "type": "PubMed", "id": "30324092", "url": "https://glygen.org/publication/PubMed/30324092" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Transgenic Mice Overexpressing PG1 Display Corneal Opacity and Severe Inflammation in the Eye.", "journal": "International journal of molecular sciences", "date": "2021-02-04", "authors": "Choi Min-Kyeung, Le Minh Thong, Cho Hye-Sun, Lee Juyoung, Jeon Hyoim, Cha Se-Yeoun, Na Manheum, Chun Taehoon, Kim Jin-Hoi, Song Hyuk, Park Chankyu", "evidence": [ { "database": "RefSeq", "id": "NP_001116621", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116621" } ], "reference": [ { "type": "PubMed", "id": "33557346", "url": "https://glygen.org/publication/PubMed/33557346" } ] } ], "pathway": [ { "id": "ssc:100144483", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144483", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" }, { "name": "defense response to Gram-negative bacterium", "id": "GO:0050829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" }, { "name": "defense response to Gram-positive bacterium", "id": "GO:0050830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050830", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" }, { "name": "antimicrobial humoral immune response mediated by antimicrobial peptide", "id": "GO:0061844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061844", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipopolysaccharide binding", "id": "GO:0001530", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001530", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNY6-1", "uniprot_ac": "A0A5G2QNY6", "uniprot_id": "A0A5G2QNY6_PIG", "mass": { "chemical_mass": 42185.0, "monoisotopic_mass": 42185.0 }, "refseq": {}, "gene_names": [ { "name": "ACTR1B", "type": "recommended", "evidence": [ { "id": "A0A5G2QNY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ] } ], "protein_names": [ { "name": "Beta-centractin", "type": "recommended", "evidence": [ { "id": "A0A5G2QNY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6/entry#names_and_taxonomy" } ] }, { "name": "Actin-related protein 1B", "type": "synonym", "evidence": [ { "id": "A0A5G2QNY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of a multi-subunit complex involved in microtubule based vesicle motility. It is associated with the centrosome.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6#function" }, { "database": "UniProtKB", "id": "ARBA00058335", "url": "https://www.uniprot.org/uniprotkb/ARBA00058335#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTR1B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6", "locus": { "chromosome": "3", "start_pos": 56620164, "end_pos": 56610304, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008194", "url": "https://www.ensembl.org/id/ENSSSCG00000008194" } ] } } ], "crossref": [ { "id": "A0A5G2QNY6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNY6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008194", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008194", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10216", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10216", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5URC3", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5URC3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLAIHYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYLLPDGSTLDVGPARFRAPELLFQPDLIGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF", "length": 375, "header": "tr|A0A5G2QNY6-1|A0A5G2QNY6_PIG Isoform 1 of Beta-centractin OS=Sus scrofa OX=9823 GN=ACTR1B PE=1 SV=2 CANONICAL=A0A5G2QNY6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6/entry", "sequence": { "sequence": "MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLAIHYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYLLPDGSTLDVGPARFRAPELLFQPDLIGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF", "length": 375, "header": "tr|A0A5G2QNY6-1|A0A5G2QNY6_PIG Isoform 1 of Beta-centractin OS=Sus scrofa OX=9823 GN=ACTR1B PE=1 SV=2 CANONICAL=A0A5G2QNY6-1" }, "locus": { "chromosome": "3", "start_pos": 56619168, "end_pos": 56610540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088139.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088139.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066603.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066603.2" } ] } }, { "isoform_ac": "A0ABB5URC3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5URC3/entry", "sequence": { "sequence": "MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEHPVLLEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYLLPDGSTLDVGPARFRAPELLFQPDLIGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF", "length": 333, "header": "tr|A0ABB5URC3-1|A0ABB5URC3_PIG Computationally mapped isoform of Actin related protein 1B OS=Sus scrofa OX=9823 GN=ACTR1B PE=1 SV=1 CANONICAL=A0A5G2QNY6-1" }, "locus": { "chromosome": "3", "start_pos": 56619168, "end_pos": 56610540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107127.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107127.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081521.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081521.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" }, { "name": "dynactin complex", "id": "GO:0005869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005869", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" }, { "name": "microtubule organizing center", "id": "GO:0005815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005815", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNY6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNY6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 375, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNY6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNY6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNZ7-1", "uniprot_ac": "A0A5G2QNZ7", "uniprot_id": "A0A5G2QNZ7_PIG", "mass": { "chemical_mass": 14984.0, "monoisotopic_mass": 14984.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QNZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QNZ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046793", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046793", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QNZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LYDQLSFLICKKDTIIIPIYRVIMKTLGARRPAPRWRRTNYNSQRYARRTAPIVRRDREGRGLYKPPYGAPPSFFEVAAWSRCHPHCAPLGCLTMLRNVERGTKAADLPAWQSGGPLGHIGRRPSERGRTP", "length": 131, "header": "tr|A0A5G2QNZ7-1|A0A5G2QNZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNZ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7/entry", "sequence": { "sequence": "LYDQLSFLICKKDTIIIPIYRVIMKTLGARRPAPRWRRTNYNSQRYARRTAPIVRRDREGRGLYKPPYGAPPSFFEVAAWSRCHPHCAPLGCLTMLRNVERGTKAADLPAWQSGGPLGHIGRRPSERGRTP", "length": 131, "header": "tr|A0A5G2QNZ7-1|A0A5G2QNZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QNZ7-1" }, "locus": { "chromosome": "6", "start_pos": 85597846, "end_pos": 85596984, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072899.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072899.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066425.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066425.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QP07-1", "uniprot_ac": "A0A5G2QP07", "uniprot_id": "A0A5G2QP07_PIG", "mass": { "chemical_mass": 81317.0, "monoisotopic_mass": 81317.0 }, "refseq": {}, "gene_names": [ { "name": "MUCL3", "type": "recommended", "evidence": [ { "id": "A0A5G2QP07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07" } ] } ], "protein_names": [ { "name": "Mucin like 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QP07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MUCL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07", "locus": {} } ], "crossref": [ { "id": "A0A5G2QP07", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045986", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045986", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22094", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22094", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22094:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22094:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQPAHCIRSIFSLQCCFLFLLASWEAGAIPLQEFQKTDDSPASDHLFPLTPGPVPITPSDHIALHPEHSSPDLPKPTEIYKPKHQYNTTHHSKLNHQAVGNSKSSTIHQTAPLISEQNPTSRKDLIIRNERSVKNNDTNKKDEDLVPKLSTSAPKRQTTCPKSKATRSSVKSNPTKTTTPSTTPQGTPEKITQKPEKTTEQKTRTTSDQERTIGASAKSTGHGEKATPGQERTPGAPDKPTGPEGKTTSVHKKTTETPEMPTGHGGKTTSCSKKTTGAPEKPTGHGEKTTPGHEKETGAPEKPMGPGEKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPGGPEEKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPDKPTGPEGKTTSGQEKTTGAPEMPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSCSKKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPSGHGGKTTSGQEKTTGTPEMPVGKTTSGQEKTTGAPEMPTGHGGKTTLGQEKTTGAPEKPVGPEGKTTSGQEKTTGAPETPTGHGGKTTLGQEKTTGAPETPTGHGGKTTCSKKTTGAPEKPTGHGGKTTLGQEKTTGAPEKPIGQEGKTTSGQEKATGAPEKPTGHEGKTTSTYKKTSDSQGGLYSGETGENDSFPAWAIVVVVLMIVILLLVFLGLIVLVSYLVRTRRTLVRRTEDHDPEDDGGPNSYPVYLMEQQNLGMGQIPSQR", "length": 783, "header": "tr|A0A5G2QP07-1|A0A5G2QP07_PIG Isoform 1 of Mucin like 3 OS=Sus scrofa OX=9823 GN=MUCL3 PE=4 SV=2 CANONICAL=A0A5G2QP07-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QP07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07/entry", "sequence": { "sequence": "MAQPAHCIRSIFSLQCCFLFLLASWEAGAIPLQEFQKTDDSPASDHLFPLTPGPVPITPSDHIALHPEHSSPDLPKPTEIYKPKHQYNTTHHSKLNHQAVGNSKSSTIHQTAPLISEQNPTSRKDLIIRNERSVKNNDTNKKDEDLVPKLSTSAPKRQTTCPKSKATRSSVKSNPTKTTTPSTTPQGTPEKITQKPEKTTEQKTRTTSDQERTIGASAKSTGHGEKATPGQERTPGAPDKPTGPEGKTTSVHKKTTETPEMPTGHGGKTTSCSKKTTGAPEKPTGHGEKTTPGHEKETGAPEKPMGPGEKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPGGPEEKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPDKPTGPEGKTTSGQEKTTGAPEMPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPTGHGGKTTSCSKKTTGAPEKPTGHGGKTTSGQEKTTGAPEKPSGHGGKTTSGQEKTTGTPEMPVGKTTSGQEKTTGAPEMPTGHGGKTTLGQEKTTGAPEKPVGPEGKTTSGQEKTTGAPETPTGHGGKTTLGQEKTTGAPETPTGHGGKTTCSKKTTGAPEKPTGHGGKTTLGQEKTTGAPEKPIGQEGKTTSGQEKATGAPEKPTGHEGKTTSTYKKTSDSQGGLYSGETGENDSFPAWAIVVVVLMIVILLLVFLGLIVLVSYLVRTRRTLVRRTEDHDPEDDGGPNSYPVYLMEQQNLGMGQIPSQR", "length": 783, "header": "tr|A0A5G2QP07-1|A0A5G2QP07_PIG Isoform 1 of Mucin like 3 OS=Sus scrofa OX=9823 GN=MUCL3 PE=4 SV=2 CANONICAL=A0A5G2QP07-1" }, "locus": { "chromosome": "7", "start_pos": 23439341, "end_pos": 23429431, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072796.3", "url": "https://www.ensembl.org/id/ENSSSCT00000072796.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066435.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066435.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 58, "start_aa": "Thr", "end_pos": 58, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr58", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 707, "end_pos": 709, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QP07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 783, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QP07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP07" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 58 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 707, "end_pos": 709 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QP18-1", "uniprot_ac": "A0A5G2QP18", "uniprot_id": "A0A5G2QP18_PIG", "mass": { "chemical_mass": 21254.0, "monoisotopic_mass": 21254.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18", "locus": {} } ], "crossref": [ { "id": "A0A5G2QP18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043963", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043963", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QP18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDINIRQDTIKLLEENIGKTFSDINLTNAFSGQPPKATEVKAKIHQWDLIKLTSFSTAKETKKKTKRQLTEWEKIVLNDATGKGLISKIHRQLRQLNSKKANNPVEKWAKDLKRHFSKDDIQMANKHIEKCSMWNSHCGAAETNPTRNDEVVGSIPGLAQWVKDPAFP", "length": 186, "header": "tr|A0A5G2QP18-1|A0A5G2QP18_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QP18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QP18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDINIRQDTIKLLEENIGKTFSDINLTNAFSGQPPKATEVKAKIHQWDLIKLTSFSTAKETKKKTKRQLTEWEKIVLNDATGKGLISKIHRQLRQLNSKKANNPVEKWAKDLKRHFSKDDIQMANKHIEKCSMWNSHCGAAETNPTRNDEVVGSIPGLAQWVKDPAFP", "length": 186, "header": "tr|A0A5G2QP18-1|A0A5G2QP18_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QP18-1" }, "locus": { "chromosome": "1", "start_pos": 82268991, "end_pos": 82268434, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085490.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085490.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064023.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064023.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QP18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QP18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP18" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QP75-1", "uniprot_ac": "A0A5G2QP75", "uniprot_id": "A0A5G2QP75_PIG", "mass": { "chemical_mass": 47392.0, "monoisotopic_mass": 47392.0 }, "refseq": {}, "gene_names": [ { "name": "FCN1", "type": "recommended", "evidence": [ { "id": "A0A5G2QP75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ] } ], "protein_names": [ { "name": "Ficolin (collagen/fibrinogen domain containing) 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QP75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FCN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75", "locus": {} } ], "crossref": [ { "id": "A0A5G2QP75", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP75", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029414", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029414", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00087", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00087", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19143:SF433", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19143:SF433", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00147", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00147", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2855086", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2855086", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287APU2", "url": "https://www.uniprot.org/uniprotkb/A0A287APU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS68", "url": "https://www.uniprot.org/uniprotkb/A0A287AS68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS68-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP75-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR79", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRRESEAPPASSGRQDRLGPKVTKETRARTPKWMRGVCLQRSETEETEGRRARVERKESLRSSSHVPQVTAHTLTSRPQPGPAPAGERSTRRPAAQTHLPGSKDKALCTHVTPQRVKRPAAAAWMTLACSMAILEEFIPAPAGPGAQEAKWGQPRWTGLGHRSWLAWGLRPCPGCRLPLPQQGSLRLPAPPPPPLPLPRAPALASTSPLPFPGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT", "length": 426, "header": "tr|A0A5G2QP75-1|A0A5G2QP75_PIG Isoform 1 of Ficolin (collagen/fibrinogen domain containing) 1 OS=Sus scrofa OX=9823 GN=FCN1 PE=4 SV=2 CANONICAL=A0A5G2QP75-1" }, "isoforms": [ { "isoform_ac": "A0A287APU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APU2/entry", "sequence": { "sequence": "MDRRESEAPPASSGRQDRLGPKETEGRRARVERKESLRSSSHVPQVTAHTLTSRPQPGPAPAGERSTRRPAAQTHLPGSKDKALCTHVTPQRVKRPAAAAWMTLACSMAILEEFIPAPAGPGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT", "length": 334, "header": "tr|A0A287APU2-1|A0A287APU2_PIG Computationally mapped isoform of Ficolin (collagen/fibrinogen domain containing) 1 OS=Sus scrofa OX=9823 GN=FCN1 PE=4 SV=2 CANONICAL=A0A5G2QP75-1" }, "locus": { "chromosome": "1", "start_pos": 274131360, "end_pos": 274125869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058467.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058467.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046056.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046056.2" } ] } }, { "isoform_ac": "A0A287AS68-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS68/entry", "sequence": { "sequence": "MELSRVAVALGPTGQLLLFLSFQTLAAQAADTCPEVKVVGLEGSDKLSILRGCPGLPGATGPKGEAGANGPKGERGSPGVVGKAGPAGPKGNQGDEREPAQLQSCATGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT", "length": 320, "header": "tr|A0A287AS68-1|A0A287AS68_PIG Computationally mapped isoform of Ficolin (collagen/fibrinogen domain containing) 1 OS=Sus scrofa OX=9823 GN=FCN1 PE=3 SV=2 CANONICAL=A0A5G2QP75-1" }, "locus": { "chromosome": "1", "start_pos": 274132786, "end_pos": 274125869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060706.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060706.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046708.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046708.2" } ] } }, { "isoform_ac": "A0A5G2QP75-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75/entry", "sequence": { "sequence": "MDRRESEAPPASSGRQDRLGPKVTKETRARTPKWMRGVCLQRSETEETEGRRARVERKESLRSSSHVPQVTAHTLTSRPQPGPAPAGERSTRRPAAQTHLPGSKDKALCTHVTPQRVKRPAAAAWMTLACSMAILEEFIPAPAGPGAQEAKWGQPRWTGLGHRSWLAWGLRPCPGCRLPLPQQGSLRLPAPPPPPLPLPRAPALASTSPLPFPGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT", "length": 426, "header": "tr|A0A5G2QP75-1|A0A5G2QP75_PIG Isoform 1 of Ficolin (collagen/fibrinogen domain containing) 1 OS=Sus scrofa OX=9823 GN=FCN1 PE=4 SV=2 CANONICAL=A0A5G2QP75-1" }, "locus": { "chromosome": "1", "start_pos": 274131360, "end_pos": 274125869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065871.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065871.2" } ] } }, { "isoform_ac": "A0A5G2QR79-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR79/entry", "sequence": { "sequence": "GTRGSRTSTPPAPCFPAEVKVVGLEGSDKLSILRGCPGLPGATGPKGEAGANGPKGERGSPGVVGKAGPAGPKGNQGDERPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT", "length": 292, "header": "tr|A0A5G2QR79-1|A0A5G2QR79_PIG Computationally mapped isoform of Ficolin (collagen/fibrinogen domain containing) 1 OS=Sus scrofa OX=9823 GN=FCN1 PE=3 SV=1 CANONICAL=A0A5G2QP75-1" }, "locus": { "chromosome": "1", "start_pos": 274131514, "end_pos": 274125869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084827.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084827.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064551.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064551.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2855086", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2855086", "resource": "Reactome", "description": "Ficolins bind to repetitive carbohydrate structures on the target cell surface" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "antigen binding", "id": "GO:0003823", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003823", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "carbohydrate derivative binding", "id": "GO:0097367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097367", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "complement activation, lectin pathway", "id": "GO:0001867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001867", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP75", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QP75-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 426, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QP75-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP75" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QP75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP75" }, { "id": "PS51406", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrinogen C-terminal", "eco_id": "ECO_0000259", "start_pos": 209, "end_pos": 426, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 365, "end_pos": 367 }, { "start_pos": 413, "end_pos": 415 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QP99-1", "uniprot_ac": "A0A5G2QP99", "uniprot_id": "A0A5G2QP99_PIG", "mass": { "chemical_mass": 55167.0, "monoisotopic_mass": 55167.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QP99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99", "locus": {} } ], "crossref": [ { "id": "A0A5G2QP99", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP99", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044105", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044105", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR47117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47117:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47117:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QP99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLGHDLEPKDINVELGPADSSPLEPPAAAADLPLAQGCSSPSAPDVRTGSLSCSVADGSSRSVGNPEKKLEERKASTELEAAAFRTGRSSEPPRGFQDSCAGGQSAQGSQPKPQQPSTAGGQHSEPLVGPQHGCLGNTISCLPEKTQLSTEFRDHRGLDPKAKYVAKFKYIPSPQADSPWEEEEQQRDWASGGGEDPAWNRSPPPPEEDSSDIRHIGGTGREQMAEARPPVSKTLSSGCRGSATVPLEQCGAPQPVARVPAQASSGGDQPAPHHRCALPVLAVFSGPEHLRPQFSVISSSQSLQKLNLSVEPPSLTDEDVQEPSRLWTPLPGGSSSGMSSVARPSVKTEGCDQGASGDLDKSTADPRHLPPAPPPHPGMAHPPCVPTPNFTASQLSGSLEQAWPGEPERLGAQARPGELCSGAGTEDLLFGSSDIHPRVLPWHPAGPERVGWKQCVFGGMVDVSRGCKSQCCNTDGVEGQDSAFHSCPSTCASACGLASTHSTENTQGSHQAWKVWGSSVAEREW", "length": 526, "header": "tr|A0A5G2QP99-1|A0A5G2QP99_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QP99-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QP99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99/entry", "sequence": { "sequence": "MLLGHDLEPKDINVELGPADSSPLEPPAAAADLPLAQGCSSPSAPDVRTGSLSCSVADGSSRSVGNPEKKLEERKASTELEAAAFRTGRSSEPPRGFQDSCAGGQSAQGSQPKPQQPSTAGGQHSEPLVGPQHGCLGNTISCLPEKTQLSTEFRDHRGLDPKAKYVAKFKYIPSPQADSPWEEEEQQRDWASGGGEDPAWNRSPPPPEEDSSDIRHIGGTGREQMAEARPPVSKTLSSGCRGSATVPLEQCGAPQPVARVPAQASSGGDQPAPHHRCALPVLAVFSGPEHLRPQFSVISSSQSLQKLNLSVEPPSLTDEDVQEPSRLWTPLPGGSSSGMSSVARPSVKTEGCDQGASGDLDKSTADPRHLPPAPPPHPGMAHPPCVPTPNFTASQLSGSLEQAWPGEPERLGAQARPGELCSGAGTEDLLFGSSDIHPRVLPWHPAGPERVGWKQCVFGGMVDVSRGCKSQCCNTDGVEGQDSAFHSCPSTCASACGLASTHSTENTQGSHQAWKVWGSSVAEREW", "length": 526, "header": "tr|A0A5G2QP99-1|A0A5G2QP99_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QP99-1" }, "locus": { "chromosome": "1", "start_pos": 128684931, "end_pos": 128682961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087059.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087059.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066723.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066723.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QP99-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 526, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QP99-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QP99" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPD4-1", "uniprot_ac": "A0A5G2QPD4", "uniprot_id": "A0A5G2QPD4_PIG", "mass": { "chemical_mass": 21321.0, "monoisotopic_mass": 21321.0 }, "refseq": {}, "gene_names": [ { "name": "SLC66A3", "type": "recommended", "evidence": [ { "id": "A0A5G2QPD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4" } ] } ], "protein_names": [ { "name": "Solute carrier family 66 member 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QPD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC66A3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4", "locus": { "chromosome": "3", "start_pos": 125494793, "end_pos": 125507239, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008631", "url": "https://www.ensembl.org/id/ENSSSCG00000008631" } ] } } ], "crossref": [ { "id": "A0A5G2QPD4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525694", "url": "https://www.ncbi.nlm.nih.gov/gene/100525694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525694", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YALIYYA", "url": "https://omabrowser.org/oma/group/YALIYYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAA6", "url": "https://www.orthodb.org/?gene=F1SAA6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12226:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12226:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLL5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAA6", "url": "https://www.uniprot.org/uniprotkb/F1SAA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAPLLWFCNYSALGVSAALKLPQISSVLRAQSARGISLPSLLLELAGFLVFLRYQSYYEYPLLTYLEYPILLTQDLVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDLAMNFCTFISAASKFAQLQYLWKTRDSGAVSALTWSLASYSCAVLTRFVVTLALNIWVTATILRYRKTAVKAE", "length": 188, "header": "tr|A0A5G2QPD4-1|A0A5G2QPD4_PIG Isoform 1 of Solute carrier family 66 member 3 OS=Sus scrofa OX=9823 GN=SLC66A3 PE=4 SV=2 CANONICAL=A0A5G2QPD4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4/entry", "sequence": { "sequence": "MEAPLLWFCNYSALGVSAALKLPQISSVLRAQSARGISLPSLLLELAGFLVFLRYQSYYEYPLLTYLEYPILLTQDLVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDLAMNFCTFISAASKFAQLQYLWKTRDSGAVSALTWSLASYSCAVLTRFVVTLALNIWVTATILRYRKTAVKAE", "length": 188, "header": "tr|A0A5G2QPD4-1|A0A5G2QPD4_PIG Isoform 1 of Solute carrier family 66 member 3 OS=Sus scrofa OX=9823 GN=SLC66A3 PE=4 SV=2 CANONICAL=A0A5G2QPD4-1" }, "locus": { "chromosome": "3", "start_pos": 125507073, "end_pos": 125495830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087530.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087530.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066758.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066758.2" } ] } }, { "isoform_ac": "A0A8W4FLL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL5/entry", "sequence": { "sequence": "GNCPGPGKSPALETDRTGFRSPVNFSSWFLVFLRYQSYYEYPLLTYLEYPILLTQDLVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDLAMNFCTFISAASKFAQLQYLWKTRDSGAVSALTWSLASYSCAVRIITTLMTTNDLTILTRFVVTLALNIWVTATILRYRKTAVKAE", "length": 182, "header": "tr|A0A8W4FLL5-1|A0A8W4FLL5_PIG Computationally mapped isoform of Solute carrier family 66 member 3 OS=Sus scrofa OX=9823 GN=SLC66A3 PE=4 SV=1 CANONICAL=A0A5G2QPD4-1" }, "locus": { "chromosome": "3", "start_pos": 125504573, "end_pos": 125495830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098525.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098525.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080102.1" } ] } }, { "isoform_ac": "F1SAA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA6/entry", "sequence": { "sequence": "MEAPLLWFCNYSALGVSAALKLPQISSVLRAQSARGISLPSLLLELAGFLVFLRYQSYYEYPLLTYLEYPILLTQDLVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDLAMNFCTFISAASKFAQLQYLWKTRDSGAVSALTWSLASYSCAVRIITTLMTTNDLTILTRFVVTLALNIWVTATILRYRKTAVKAE", "length": 202, "header": "tr|F1SAA6-1|F1SAA6_PIG Computationally mapped isoform of Solute carrier family 66 member 3 OS=Sus scrofa OX=9823 GN=SLC66A3 PE=4 SV=3 CANONICAL=A0A5G2QPD4-1" }, "locus": { "chromosome": "3", "start_pos": 125507073, "end_pos": 125495830, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009443.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009443.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009200.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009200.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525694", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MPH6-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "Slc66a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEAGLLWFCNWSTLGVCAALKLPQIYAQLTARSARGISLPSLLLELAGFLVFFRYQYYYGNPLLTYLEYPILIAQDIILLLFVFHFNGNMKQALPYAAVFVSSWFILSLQKWIIDLAMNLSTVISVASKFAQLQYLWKVQDSGAVSALTWGLSSYTCATRIITTLMTTNDLTILIRFVVMLALNIWVTITVLRYRKPVTKAE", "length": 202 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XGR6-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "PQLC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVLLDLAHWSTWAVCAVIKLPQLAAVLAAGSARGLSLGSLVLELAGFVVFLRYQIYYDYPLQTYLEYPIIIAQDVILLLLILHFNGNMKQALLYAVMFWGGWYMLTLRRWIIDLAMNLCTLISAASKLAQLRCLWQTKDSGQVSALTWSMSAYTCATRIFTTVMTTNDLIVLIRFITMLILNIWVTATILRYRRTKKTN", "length": 201 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V6N5-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "Slc66a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAGLLWFCNWSTLGVCAALKLPQIYAQLAARSARGISLPSLLLELAGFLVFLRYQHYYGNPLLTYLEYPILIVQDIVLLLFVFHFNGNVKQALPYMAVFVSSWFILSLQKWIIDLAMNLCTVISAASKFAQLQYLWKAQDSGAVSALTWGLSAYTCATRIITTLMTTNDLTILLRFVIMLALNIWVTATVLHYRKSVTKAE", "length": 202 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C6U2-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "Slc66a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAGLLWFCNWSTLGVCAALKLPQIYAQLAARSARGISLPSLLLELAGFLVFLRYQHYYGNPLLTYLEYPILIAQDIVLLLFVFHFNGNVKQALPYMAVFVSSWFILSLQKWIIDLAMNLCTVISAASKFAQLQYLWKVQDSGAVSALTWGLSAYTCATRIITTLMTTNDLTILIRFVIMLALNIWVTATVLHYRKSATKAE", "length": 202 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N755-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "SLC66A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYPILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNLCTFISAASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLALNIWVTVTVLRYRKTAIKAE", "length": 202 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VZF3-1", "protein_name": "Solute carrier family 66 member 3", "gene_name": "Dmel\\CG1265", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSGALGDVVSEYLERGPVLVVADLLSLITVSSCLVIKVPQINTIRANESSKGISVLGLCLELFSYTVMLSYNYTSGYDFLSYMEYPVLLLQEYALIYYAFKYQDLLGRRTQVVAILYSIVATLIYMKLFPIIILKFLVPFCTPIGATSKVLQLLAILRTKDASSVSRTTWALSAFTNMTRIYTVFFQSHDWMLLSNFLISTFLSASVFTAACVYKKKAKAE", "length": 221 }, "evidence": [ { "id": "A0A5G2QPD4", "url": "https://omabrowser.org/oma/group/A0A5G2QPD4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPD4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 188, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPD4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPD4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPD6-1", "uniprot_ac": "A0A5G2QPD6", "uniprot_id": "A0A5G2QPD6_PIG", "mass": { "chemical_mass": 70298.0, "monoisotopic_mass": 70298.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "ZP domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045528", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045528", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47130", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47130", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47130:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47130:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSWGSDATSSTKDPATVGTIECSFTTPAPSNNGRDNSPAAPPNTSLTARRPAPSESQKHATPATPPSSPRPSSSAGSTEQTTSIQETQEERLNTALTTSSESTTLSDSLMTSTLKDQGGTSRSTTSSSMATSAYTSKQNQSVPTTASLPSSSIVSGLESLVSTDSPESAMTTSPIDLNTPGNDVTSLESMTTTVSQKSAPTVSLATLNEITDGKESLFVTTRALTHTTSPTMTTLEITVPRANVSETQEGVTVAASPTPTTAHTMSTLSERHHNTTTQTPSHPEESAPSADTATAQSPEPSVAHSAALIPSSSVTTKSSAMTGASQASPKHTQSSGPQAGVCALDEYPADTGGCMCNDSYYAHSELSRVLVALHCQPQKIEVILSSCFLKTRRWILEEGAFSRCSSVSKIAEGRSVQVFTMEKKDGTCGLHLSTNNSHALYSLEVQLLKVLPDSVSNDSTVLSFKCMYPLVFVVRVSFLSLSRYITIHVPGTGDTIVILAIFTDSASSSPLENRPAPLGKPLYVVLRATSSDPDRFALVANEVFASTNISRTGAAKATYYFVKKSCPVSNRLLRGVQANGASLEVKLAFNLFRFSTSDTVYLHGRVTLCDKRAGRQCQPTCSQKSPPKIRAWKIPAREGLESGAGWMVFGPIRLGGNEIIWGPP", "length": 665, "header": "tr|A0A5G2QPD6-1|A0A5G2QPD6_PIG Isoform 1 of ZP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPD6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6/entry", "sequence": { "sequence": "MTSWGSDATSSTKDPATVGTIECSFTTPAPSNNGRDNSPAAPPNTSLTARRPAPSESQKHATPATPPSSPRPSSSAGSTEQTTSIQETQEERLNTALTTSSESTTLSDSLMTSTLKDQGGTSRSTTSSSMATSAYTSKQNQSVPTTASLPSSSIVSGLESLVSTDSPESAMTTSPIDLNTPGNDVTSLESMTTTVSQKSAPTVSLATLNEITDGKESLFVTTRALTHTTSPTMTTLEITVPRANVSETQEGVTVAASPTPTTAHTMSTLSERHHNTTTQTPSHPEESAPSADTATAQSPEPSVAHSAALIPSSSVTTKSSAMTGASQASPKHTQSSGPQAGVCALDEYPADTGGCMCNDSYYAHSELSRVLVALHCQPQKIEVILSSCFLKTRRWILEEGAFSRCSSVSKIAEGRSVQVFTMEKKDGTCGLHLSTNNSHALYSLEVQLLKVLPDSVSNDSTVLSFKCMYPLVFVVRVSFLSLSRYITIHVPGTGDTIVILAIFTDSASSSPLENRPAPLGKPLYVVLRATSSDPDRFALVANEVFASTNISRTGAAKATYYFVKKSCPVSNRLLRGVQANGASLEVKLAFNLFRFSTSDTVYLHGRVTLCDKRAGRQCQPTCSQKSPPKIRAWKIPAREGLESGAGWMVFGPIRLGGNEIIWGPP", "length": 665, "header": "tr|A0A5G2QPD6-1|A0A5G2QPD6_PIG Isoform 1 of ZP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPD6-1" }, "locus": { "chromosome": "6", "start_pos": 83645832, "end_pos": 83633866, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080276.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080276.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063943.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063943.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 665, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPD6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD6" }, { "id": "PS51034", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51034" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZP", "eco_id": "ECO_0000259", "start_pos": 375, "end_pos": 629, "start_aa": "His", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65, 259 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 275, "end_pos": 277 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 436, "end_pos": 438 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 549, "end_pos": 551 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPF7-1", "uniprot_ac": "A0A5G2QPF7", "uniprot_id": "A0A5G2QPF7_PIG", "mass": { "chemical_mass": 51662.0, "monoisotopic_mass": 51662.0 }, "refseq": {}, "gene_names": [ { "name": "GLI4", "type": "recommended", "evidence": [ { "id": "A0A5G2QPF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ] } ], "protein_names": [ { "name": "GLI family zinc finger 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QPF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7", "locus": { "chromosome": "4", "start_pos": 1215075, "end_pos": 1235163, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039881", "url": "https://www.ensembl.org/id/ENSSSCG00000039881" } ] } } ], "crossref": [ { "id": "A0A5G2QPF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039881", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039881", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627184", "url": "https://www.ncbi.nlm.nih.gov/gene/100627184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AQHHEAQ", "url": "https://omabrowser.org/oma/group/AQHHEAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF425", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF425", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480J3Q7", "url": "https://www.uniprot.org/uniprotkb/A0A480J3Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480J3Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480J3Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0IUY1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0IUY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0IUY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0IUY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TQLLGDWCPGCARQSRCCQSEFWKLWSGALCANKGKQHRRLDTWGLSPGVGRHPSGWCPLAVLCPACSSPPRPGLRTRFLCHFINKESFQPPEKAPIVLPASLSSPWSTTPQRCGVHSSPGPGGLGPGFPVCSPEVPSQLPQEEGLWDLDLQDEQEDQIARDTCLPDSESEPQLAPSSPRPRGPGEEVHGGRDRGALRTLLRRLARRPKCGDGLGQECSLEQPPGAGPCTQKRGGPWLGPQGALGTEGGPERAAELAGSCARGSGLGARQGGPRGGKPHRCEACGKSFRYNSLLLKHQRIHTGEKPYECPDCGKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHVRVHNGEKPYACGECGQAFSQSSNLLRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECPDCGKAFRGRSHFFRHLRTHTGEKPFACGACGKAFGQSSQLIQHQRVHSRE", "length": 472, "header": "tr|A0A5G2QPF7-1|A0A5G2QPF7_PIG Isoform 1 of GLI family zinc finger 4 OS=Sus scrofa OX=9823 GN=GLI4 PE=3 SV=2 CANONICAL=A0A5G2QPF7-1" }, "isoforms": [ { "isoform_ac": "A0A480J3Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480J3Q7/entry", "sequence": { "sequence": "MAALVDSQEPPHVLSPVGLESPGTPGAQLHGFPVCSPEVPSQLPQEEGLWDLDLQDEQEDQIARDTCLPDSESEPQLAPSSPRPRGPGEEVHGGRDRGALRTLLRRLARRPKCGDGLGQECSLEQPPGAGPCTQKRGGPWLGPQGALGTEGGPERAAELAGSCARGSGLGARQGGPRGGKPHRCEACGKSFRYNSLLLKHQRIHTGEKPYECPDCGKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHVRVHNGEKPYACGECGQAFSQSSNLLRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECPDCGKAFRGRSHFFRHLRTHTGEKPFACGACGKAFGQSSQLIQHQRVHSRE", "length": 375, "header": "tr|A0A480J3Q7-1|A0A480J3Q7_PIG Computationally mapped isoform of GLI family zinc finger 4 OS=Sus scrofa OX=9823 GN=GLI4 PE=3 SV=1 CANONICAL=A0A5G2QPF7-1" }, "locus": { "chromosome": "4", "start_pos": 1220193, "end_pos": 1215225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068646.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068646.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070966.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070966.2" } ] } }, { "isoform_ac": "A0A5G2QPF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7/entry", "sequence": { "sequence": "TQLLGDWCPGCARQSRCCQSEFWKLWSGALCANKGKQHRRLDTWGLSPGVGRHPSGWCPLAVLCPACSSPPRPGLRTRFLCHFINKESFQPPEKAPIVLPASLSSPWSTTPQRCGVHSSPGPGGLGPGFPVCSPEVPSQLPQEEGLWDLDLQDEQEDQIARDTCLPDSESEPQLAPSSPRPRGPGEEVHGGRDRGALRTLLRRLARRPKCGDGLGQECSLEQPPGAGPCTQKRGGPWLGPQGALGTEGGPERAAELAGSCARGSGLGARQGGPRGGKPHRCEACGKSFRYNSLLLKHQRIHTGEKPYECPDCGKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHVRVHNGEKPYACGECGQAFSQSSNLLRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECPDCGKAFRGRSHFFRHLRTHTGEKPFACGACGKAFGQSSQLIQHQRVHSRE", "length": 472, "header": "tr|A0A5G2QPF7-1|A0A5G2QPF7_PIG Isoform 1 of GLI family zinc finger 4 OS=Sus scrofa OX=9823 GN=GLI4 PE=3 SV=2 CANONICAL=A0A5G2QPF7-1" }, "locus": { "chromosome": "4", "start_pos": 1217821, "end_pos": 1215225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078098.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078098.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066783.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066783.2" } ] } }, { "isoform_ac": "A0A8D0IUY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0IUY1/entry", "sequence": { "sequence": "MAALVDSQEPPHVLSPVGLESPGTPGAQLHGQQHGFPVCSPEVPSQLPDLDLQDEQEDQIARDTCLPGE", "length": 69, "header": "tr|A0A8D0IUY1-1|A0A8D0IUY1_PIG Computationally mapped isoform of GLI family zinc finger 4 OS=Sus scrofa OX=9823 GN=GLI4 PE=4 SV=1 CANONICAL=A0A5G2QPF7-1" }, "locus": { "chromosome": "4", "start_pos": 1220193, "end_pos": 1216839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097418.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097418.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080993.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080993.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BHF3-1", "protein_name": "GLI family zinc finger 4", "gene_name": "GLI4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGCQKWTDGWRSCWQIPSSRLCPRSAPAAHRQQVPGVHSFSRPWGKMAALGDGQEPPHVLSPVSFESPGTPGAHHHEAQLHLHLHGHQHGFPSSSPEVPSQPPQEPSDLDFQEVAEVQICRDTCWSGSESEPEQAPSSPSPHGPEDEVHQAGGVLRTLLRSLPRRPGGGDRFGQEPSLERSAGQTPRAGPRSQKRDTWLGSQGASGTEGSPGRTAELAGGLSRGSGLGTQQGGPRGGKPHRCEACGKSFKYNSLLLKHQRIHTGEKPYACHECDKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHLRVHNGEKPYECGECGQAFSQSSNLVRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECPDCGKAFRGRSHFFRHLRTHTGEKPFACGACGKAFGQSSQLIQHQRVHYRE", "length": 433 }, "evidence": [ { "id": "A0A5G2QPF7", "url": "https://omabrowser.org/oma/group/A0A5G2QPF7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P10075-1", "protein_name": "Zinc finger protein GLI4", "gene_name": "GLI4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALGDIQESPSVPSPVSLSSPGTPGTQHHEPQLHLHGHQHGSPGSSPKVLSQPSDLDLQDVEEVEIGRDTFWPDSEPKPEQAPRSPGSQAPDEGAGGALRSLLRSLPRRARCSAGFGPESSAERPAGQPPGAVPCAQPRGAWRVTLVQQAAAGPEGAPERAAELGVNFGRSRQGSARGAKPHRCEACGKSFKYNSLLLKHQRIHTGEKPYACHECGKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHLRIHNGEKPYKCGECGQAFSQSSNLVRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECSDCGKAFRGRSHFFRHLRTHTGEKPFACGACGKAFGQSSQLIQHQRVHYRE", "length": 376 }, "evidence": [ { "id": "A0A5G2QPF7", "url": "https://omabrowser.org/oma/group/A0A5G2QPF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 472, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPF7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 279, "end_pos": 306, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPH1-1", "uniprot_ac": "A0A5G2QPH1", "uniprot_id": "A0A5G2QPH1_PIG", "mass": { "chemical_mass": 34960.0, "monoisotopic_mass": 34960.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRQRTITQMREKGKTPENQLSYEILGLQEKDLMLKKMQDIGNKLEAKMDNLQETLSKEIQDIKLKQEEMQNTMTKVKNSLEAANSRIQEVEEQISEVEDRLVEITDAEQKREKRLKTNEESLRELWDVKRTNILIIGVPEGQEREKGTEKIFQEIIAENLPNMGKEPLTQIQEAQRVPYKISPRRNTPRHILIKLTKIKDKEKILKAAREKKKVTYKGTPIRLWADFSAETLQARREWHDILNTMKGKNLQPRLLYPARLSFRFEGEIKSFTDKQKLREFSNTKPPLRQILKELL", "length": 296, "header": "tr|A0A5G2QPH1-1|A0A5G2QPH1_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QPH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1/entry", "sequence": { "sequence": "MKRQRTITQMREKGKTPENQLSYEILGLQEKDLMLKKMQDIGNKLEAKMDNLQETLSKEIQDIKLKQEEMQNTMTKVKNSLEAANSRIQEVEEQISEVEDRLVEITDAEQKREKRLKTNEESLRELWDVKRTNILIIGVPEGQEREKGTEKIFQEIIAENLPNMGKEPLTQIQEAQRVPYKISPRRNTPRHILIKLTKIKDKEKILKAAREKKKVTYKGTPIRLWADFSAETLQARREWHDILNTMKGKNLQPRLLYPARLSFRFEGEIKSFTDKQKLREFSNTKPPLRQILKELL", "length": 296, "header": "tr|A0A5G2QPH1-1|A0A5G2QPH1_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QPH1-1" }, "locus": { "chromosome": "10", "start_pos": 43784804, "end_pos": 43783917, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080592.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080592.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065961.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065961.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 296, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 131, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 294, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QPH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH1" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 128, "start_aa": "Ile", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPH8-1", "uniprot_ac": "A0A5G2QPH8", "uniprot_id": "A0A5G2QPH8_PIG", "mass": { "chemical_mass": 8787.0, "monoisotopic_mass": 8787.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPH8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPH8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045622", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045622", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLLLMSESVWPMFSSKSLIVSGLIPRSFIHLELIFVYGVRKCTNFILFHVAVQFSQHHLLNKLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QPH8-1|A0A5G2QPH8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPH8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8/entry", "sequence": { "sequence": "MLLLLMSESVWPMFSSKSLIVSGLIPRSFIHLELIFVYGVRKCTNFILFHVAVQFSQHHLLNKLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QPH8-1|A0A5G2QPH8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPH8-1" }, "locus": { "chromosome": "15", "start_pos": 8690120, "end_pos": 8689893, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071746.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071746.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060192.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060192.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPH8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 76, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPH8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPH8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPJ8-1", "uniprot_ac": "A0A5G2QPJ8", "uniprot_id": "A0A5G2QPJ8_PIG", "mass": { "chemical_mass": 14013.0, "monoisotopic_mass": 14013.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000049691", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049691", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSLCSCLRNLHTAFHSCCTNLQSHQQCSSVPFSPHPLQHLLFVDFLVMAILAGIRWYLREVLICISLIMSDVEHLFMGLSAICISSLEKCLFRSSAHFWMGLFVFLVWSCRSCL", "length": 125, "header": "tr|A0A5G2QPJ8-1|A0A5G2QPJ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPJ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8/entry", "sequence": { "sequence": "MPRSGIAGSNGSSLCSCLRNLHTAFHSCCTNLQSHQQCSSVPFSPHPLQHLLFVDFLVMAILAGIRWYLREVLICISLIMSDVEHLFMGLSAICISSLEKCLFRSSAHFWMGLFVFLVWSCRSCL", "length": 125, "header": "tr|A0A5G2QPJ8-1|A0A5G2QPJ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPJ8-1" }, "locus": { "chromosome": "7", "start_pos": 17343417, "end_pos": 17343043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070535.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070535.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066625.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066625.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPJ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPP6-1", "uniprot_ac": "A0A5G2QPP6", "uniprot_id": "A0A5G2QPP6_PIG", "mass": { "chemical_mass": 15184.0, "monoisotopic_mass": 15184.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPP6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIWWPAPPLPFTVNSTLCSVLGLYLWKEELFFTLGLALTWPFILERALRFPSIQPPQSLRKASPCWHLAGAATSPAVSRLEALIRAALEAELLGNCGFQGGPYKKRQGRDVAKLWVRKEQVLSTRRNPGGRGPADGT", "length": 137, "header": "tr|A0A5G2QPP6-1|A0A5G2QPP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QPP6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6/entry", "sequence": { "sequence": "MIWWPAPPLPFTVNSTLCSVLGLYLWKEELFFTLGLALTWPFILERALRFPSIQPPQSLRKASPCWHLAGAATSPAVSRLEALIRAALEAELLGNCGFQGGPYKKRQGRDVAKLWVRKEQVLSTRRNPGGRGPADGT", "length": 137, "header": "tr|A0A5G2QPP6-1|A0A5G2QPP6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QPP6-1" }, "locus": { "chromosome": "6", "start_pos": 78882231, "end_pos": 78881505, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079005.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079005.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064049.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064049.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPP6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPQ7-1", "uniprot_ac": "A0A5G2QPQ7", "uniprot_id": "A0A5G2QPQ7_PIG", "mass": { "chemical_mass": 108460.0, "monoisotopic_mass": 108460.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "A-kinase anchoring protein 17B", "type": "synonym", "evidence": [ { "id": "A0A5G2QPQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPQ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPQ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012627", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012627", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12264", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12264", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12484", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12484", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12484:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12484:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25015", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25015", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAPGKIPGCVLLHFWQNLPFRPRRFPADTMTVTVVYDNSEATELCAAQHLYLKPIAKLMISVLLPESTEPVRPFSNWEVLDQLKSLICPDQFTTVRLSKSTKDFIRFEGEAETRSLVQILKAKLHGKLIKLNGLKTDLRVVATDAQGEWEHFPKERGAPSADGPEEQDQDKSPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTGGSFGGLSFGLQTFEAFIQYQESTDFVKAMESLRGMKLMLKGDDGKALACNIKVMFDTTKHFSEGAIRRRNQERLKLQELEEERKKEKKREEEEAERKRREEERKAQEKRKKARVRRRALKERHRQRKQKDPTRGEAPLEAAAPAEHWEETKDLLAWRRVEALRLLRALLRKIAAALCPGSPVWVGSGADRAAGTTSGGATKEELNTQYLQNQEEVPGYQVSKSDTKRRQKMKKRGRAHQRKSSPHHRGKKLRYSARKERPGKLLSNDHNHSLVPDPKASPIAMIQGPSLEKEDPHGSDKSCSPGLSERDRGRKQKIYETDEFIDYLLNYYQTPKYARICLEPRHTTSTCQWQRAVRVKGNGFQISLRKRKCPSTSVSQRQSLGSSEQVQEDDPWPKTWLPDPGQRPQERGHVDYAAERTQDFQYLCKDMAREAGDQLSPPDGRSHLLEKTHAHQVRDSRSPSPSQVSSPSRSADFDLVLTDFLEEISSDSECFSEILSENQEEKEKSVATEDSSPEQGSLDADEGTPCDPEMRSSPQPLYAQWKDDGEKRHSPYKLRKPGKRSQYEPRCSWLEDENESMTDEKGNSRKRGVPAPRYLFDKGYCHESRPGAQFDNMARKRRRLTDGTFDYRPFRVPMTSSKRANASYLMDFPKRRETLRKSEYTQEARRFERHDNSEEVTLNSVNYYVRQKSQEHMDYGSCFGNNYTSSFYFPMF", "length": 943, "header": "tr|A0A5G2QPQ7-1|A0A5G2QPQ7_PIG Isoform 1 of A-kinase anchoring protein 17B OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QPQ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7/entry", "sequence": { "sequence": "MLAPGKIPGCVLLHFWQNLPFRPRRFPADTMTVTVVYDNSEATELCAAQHLYLKPIAKLMISVLLPESTEPVRPFSNWEVLDQLKSLICPDQFTTVRLSKSTKDFIRFEGEAETRSLVQILKAKLHGKLIKLNGLKTDLRVVATDAQGEWEHFPKERGAPSADGPEEQDQDKSPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTGGSFGGLSFGLQTFEAFIQYQESTDFVKAMESLRGMKLMLKGDDGKALACNIKVMFDTTKHFSEGAIRRRNQERLKLQELEEERKKEKKREEEEAERKRREEERKAQEKRKKARVRRRALKERHRQRKQKDPTRGEAPLEAAAPAEHWEETKDLLAWRRVEALRLLRALLRKIAAALCPGSPVWVGSGADRAAGTTSGGATKEELNTQYLQNQEEVPGYQVSKSDTKRRQKMKKRGRAHQRKSSPHHRGKKLRYSARKERPGKLLSNDHNHSLVPDPKASPIAMIQGPSLEKEDPHGSDKSCSPGLSERDRGRKQKIYETDEFIDYLLNYYQTPKYARICLEPRHTTSTCQWQRAVRVKGNGFQISLRKRKCPSTSVSQRQSLGSSEQVQEDDPWPKTWLPDPGQRPQERGHVDYAAERTQDFQYLCKDMAREAGDQLSPPDGRSHLLEKTHAHQVRDSRSPSPSQVSSPSRSADFDLVLTDFLEEISSDSECFSEILSENQEEKEKSVATEDSSPEQGSLDADEGTPCDPEMRSSPQPLYAQWKDDGEKRHSPYKLRKPGKRSQYEPRCSWLEDENESMTDEKGNSRKRGVPAPRYLFDKGYCHESRPGAQFDNMARKRRRLTDGTFDYRPFRVPMTSSKRANASYLMDFPKRRETLRKSEYTQEARRFERHDNSEEVTLNSVNYYVRQKSQEHMDYGSCFGNNYTSSFYFPMF", "length": 943, "header": "tr|A0A5G2QPQ7-1|A0A5G2QPQ7_PIG Isoform 1 of A-kinase anchoring protein 17B OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QPQ7-1" }, "locus": { "chromosome": "X", "start_pos": 97757603, "end_pos": 97748847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070989.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070989.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064064.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064064.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 805, "end_pos": 807, "annotation": "n_glycosylation_sequon" }, { "start_pos": 872, "end_pos": 874, "annotation": "n_glycosylation_sequon" }, { "start_pos": 933, "end_pos": 935, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPQ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 943, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPQ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPQ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPQ7" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 175, "end_pos": 276, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 498, "end_pos": 500 }, { "start_pos": 805, "end_pos": 807 }, { "start_pos": 872, "end_pos": 874 }, { "start_pos": 933, "end_pos": 935 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPV5-1", "uniprot_ac": "A0A5G2QPV5", "uniprot_id": "A0A5G2QPV5_PIG", "mass": { "chemical_mass": 14953.0, "monoisotopic_mass": 14953.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPV5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044299", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044299", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGIASLISFSAFSLLVYRNAIDFCVLILYPATLQNLWMSSDSFLVESLGFSRYSIMSSANSDSFTSSFPIWIPFISFTSLIAVARTSRTMLKSSGESGHPCLLPDLRGNSFSFSPLRMMLALGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QPV5-1|A0A5G2QPV5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPV5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5/entry", "sequence": { "sequence": "MVNGIASLISFSAFSLLVYRNAIDFCVLILYPATLQNLWMSSDSFLVESLGFSRYSIMSSANSDSFTSSFPIWIPFISFTSLIAVARTSRTMLKSSGESGHPCLLPDLRGNSFSFSPLRMMLALGLSYMAFIMLR", "length": 135, "header": "tr|A0A5G2QPV5-1|A0A5G2QPV5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPV5-1" }, "locus": { "chromosome": "5", "start_pos": 103674980, "end_pos": 103674576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078296.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078296.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066750.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066750.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPV5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPV5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPV5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPW4-1", "uniprot_ac": "A0A5G2QPW4", "uniprot_id": "A0A5G2QPW4_PIG", "mass": { "chemical_mass": 14976.0, "monoisotopic_mass": 14976.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051169", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051169", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGVVFLTSLSDLLLLVYRNARDFHILILYPATLPKSLVSCSSFLVASLGFSLQSIMSSAKGDSFTSPFTIWIPLISFSSLTAVARTSKMMLNKHSEYEHPCLVPDLSRNAFSFLPLRMTLAVGLSYVDFIMLM", "length": 135, "header": "tr|A0A5G2QPW4-1|A0A5G2QPW4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPW4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4/entry", "sequence": { "sequence": "MVNGVVFLTSLSDLLLLVYRNARDFHILILYPATLPKSLVSCSSFLVASLGFSLQSIMSSAKGDSFTSPFTIWIPLISFSSLTAVARTSKMMLNKHSEYEHPCLVPDLSRNAFSFLPLRMTLAVGLSYVDFIMLM", "length": 135, "header": "tr|A0A5G2QPW4-1|A0A5G2QPW4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPW4-1" }, "locus": { "chromosome": "3", "start_pos": 113193685, "end_pos": 113193281, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072407.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072407.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060327.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060327.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPW4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPX9-1", "uniprot_ac": "A0A5G2QPX9", "uniprot_id": "A0A5G2QPX9_PIG", "mass": { "chemical_mass": 12739.0, "monoisotopic_mass": 12739.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QPX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047415", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047415", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QPX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GRGPRQAQAPEPACTFTLALQPALYQAGLSSCFCFFPDTAPPPSSLSGPQQWLYLQDPGCAPRGLHCHAQQTLCHQVPSDPARHFQPLPVQGAGLPPPAPRSPGPPAAHSRLPRLPPGRAA", "length": 121, "header": "tr|A0A5G2QPX9-1|A0A5G2QPX9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPX9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9/entry", "sequence": { "sequence": "GRGPRQAQAPEPACTFTLALQPALYQAGLSSCFCFFPDTAPPPSSLSGPQQWLYLQDPGCAPRGLHCHAQQTLCHQVPSDPARHFQPLPVQGAGLPPPAPRSPGPPAAHSRLPRLPPGRAA", "length": 121, "header": "tr|A0A5G2QPX9-1|A0A5G2QPX9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QPX9-1" }, "locus": { "chromosome": "2", "start_pos": 6059036, "end_pos": 6058162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088261.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088261.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060342.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060342.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 121, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPX9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPY8-1", "uniprot_ac": "A0A5G2QPY8", "uniprot_id": "A0A5G2QPY8_PIG", "mass": { "chemical_mass": 49467.0, "monoisotopic_mass": 49467.0 }, "refseq": {}, "gene_names": [ { "name": "LIMS1", "type": "recommended", "evidence": [ { "id": "A0A5G2QPY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ] } ], "protein_names": [ { "name": "LIM and senescent cell antigen-like-containing domain protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QPY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8/entry#names_and_taxonomy" } ] }, { "name": "Particularly interesting new Cys-His protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QPY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Within the IPP (ILK-PINCH-PARVIN) complex, binds to F-actin, promoting F-actin bundling, a process required to generate force for actin cytoskeleton reorganization and subsequent dynamic cell adhesion events such as cell spreading and migration.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6E0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E0#function" }, { "database": "UniProtKB", "id": "ARBA00055791", "url": "https://www.uniprot.org/uniprotkb/ARBA00055791#function" }, { "database": "UniProtKB", "id": "F1SU28", "url": "https://www.uniprot.org/uniprotkb/F1SU28#function" }, { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8#function" }, { "database": "UniProtKB", "id": "A0A287BTD0", "url": "https://www.uniprot.org/uniprotkb/A0A287BTD0#function" }, { "database": "UniProtKB", "id": "A0A287BG02", "url": "https://www.uniprot.org/uniprotkb/A0A287BG02#function" }, { "database": "UniProtKB", "id": "A0A8W4FKN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKN3#function" }, { "database": "UniProtKB", "id": "A0A5G2RHN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHN2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LIMS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8", "locus": { "chromosome": "3", "start_pos": 47606230, "end_pos": 47672884, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008137", "url": "https://www.ensembl.org/id/ENSSSCG00000008137" } ] } } ], "crossref": [ { "id": "A0A5G2QPY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008137", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008137", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09331", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09331", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09332", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09332", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09333", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09333", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09334", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09334", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09335", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09335", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511559", "url": "https://www.ncbi.nlm.nih.gov/gene/100511559", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017351", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017351", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287BTD0", "url": "https://www.orthodb.org/?gene=A0A287BTD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R6E0", "url": "https://www.orthodb.org/?gene=A0A5G2R6E0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24210", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24210", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24210:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24210:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24210:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24210:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BG02", "url": "https://www.uniprot.org/uniprotkb/A0A287BG02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTD0", "url": "https://www.uniprot.org/uniprotkb/A0A287BTD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6E0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RHN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RHN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU28", "url": "https://www.uniprot.org/uniprotkb/F1SU28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU28-1", "url": "https://www.uniprot.org/uniprotkb/F1SU28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRSPRQPGMGSTGLLAARTRGLCPGHSAGTATSRSTRSFATFMRNSTWPTPWPTPAASAAGVASRPRRRSSTAMASCTTSSALCAPSASSSSPRASSTRFRPFPVSQAVSEEGRVFISRWASIFPPRGVPSREVLGQPGGKPLTCHRTELWKTEKFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL", "length": 440, "header": "tr|A0A5G2QPY8-1|A0A5G2QPY8_PIG Isoform 1 of LIM and senescent cell antigen-like-containing domain protein 1 OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=2 CANONICAL=A0A5G2QPY8-1" }, "isoforms": [ { "isoform_ac": "A0A287BG02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG02/entry", "sequence": { "sequence": "AGSNHQRSLNMANALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK", "length": 335, "header": "tr|A0A287BG02-1|A0A287BG02_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=3 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47630034, "end_pos": 47610907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046796.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046796.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054985.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054985.3" } ] } }, { "isoform_ac": "A0A287BTD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTD0/entry", "sequence": { "sequence": "MAALQLKELSQSGLYRRRRDRPDSLGLGGLGLREEALSNMANALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK", "length": 364, "header": "tr|A0A287BTD0-1|A0A287BTD0_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=2 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47653252, "end_pos": 47610907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043323.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043323.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059461.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059461.2" } ] } }, { "isoform_ac": "A0A5G2QPY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8/entry", "sequence": { "sequence": "MKRSPRQPGMGSTGLLAARTRGLCPGHSAGTATSRSTRSFATFMRNSTWPTPWPTPAASAAGVASRPRRRSSTAMASCTTSSALCAPSASSSSPRASSTRFRPFPVSQAVSEEGRVFISRWASIFPPRGVPSREVLGQPGGKPLTCHRTELWKTEKFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL", "length": 440, "header": "tr|A0A5G2QPY8-1|A0A5G2QPY8_PIG Isoform 1 of LIM and senescent cell antigen-like-containing domain protein 1 OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=2 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47634710, "end_pos": 47613757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068750.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068750.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060352.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060352.2" } ] } }, { "isoform_ac": "A0A5G2R6E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E0/entry", "sequence": { "sequence": "MALPGPRPAIIPEDEEVPQAARNGVHRAPGGEDERAVSRPQRRHSDLKVYKEFCDFYAKFNMANALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK", "length": 386, "header": "tr|A0A5G2R6E0-1|A0A5G2R6E0_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=1 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47634750, "end_pos": 47610907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078059.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078059.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071910.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071910.1" } ] } }, { "isoform_ac": "A0A5G2RHN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHN2/entry", "sequence": { "sequence": "NMANALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK", "length": 326, "header": "tr|A0A5G2RHN2-1|A0A5G2RHN2_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=1 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47629769, "end_pos": 47610907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071977.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071977.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070891.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070891.1" } ] } }, { "isoform_ac": "A0A8W4FKN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKN3/entry", "sequence": { "sequence": "MKRSPRQPGMGSTGLLAARTRGLCPGHSAGTATSRSTRSFATFMRNSTWPTPWPTPAASAAGVASRPRRRSSTAMASCTTSSALCAPSASSSSPRASSTRFRPFPVSQAVSEEGRVFISRWASIFPPRGVPSREVLGQPGGKPLTCHRTELWKTEKVCIRDTPRLLPAGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL", "length": 430, "header": "tr|A0A8W4FKN3-1|A0A8W4FKN3_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein 1 OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=1 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47634710, "end_pos": 47613757, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104778.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104778.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080036.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080036.1" } ] } }, { "isoform_ac": "F1SU28-1", "url": "https://www.uniprot.org/uniprotkb/F1SU28/entry", "sequence": { "sequence": "EGGWRTETEAGAGGSNMANALANASCERCRGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK", "length": 341, "header": "tr|F1SU28-1|F1SU28_PIG Computationally mapped isoform of LIM and senescent cell antigen-like-containing domain protein OS=Sus scrofa OX=9823 GN=LIMS1 PE=1 SV=5 CANONICAL=A0A5G2QPY8-1" }, "locus": { "chromosome": "3", "start_pos": 47629892, "end_pos": 47610907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008914.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008914.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008688.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008688.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 55, "start_aa": "Thr", "end_pos": 55, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr55", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 12, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cellular response to transforming growth factor beta stimulus", "id": "GO:0071560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071560", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "actin filament network formation", "id": "GO:0051639", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051639", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "tumor necrosis factor-mediated signaling pathway", "id": "GO:0033209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033209", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "positive regulation of integrin-mediated signaling pathway", "id": "GO:2001046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001046", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cell-cell junction organization", "id": "GO:0045216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045216", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" }, { "name": "positive regulation of signal transduction", "id": "GO:0009967", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009967", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPY8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 440, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPY8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPY8" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 232, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 55 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 191, "end_pos": 193 }, { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ14-1", "uniprot_ac": "A0A5G2QQ14", "uniprot_id": "A0A5G2QQ14_PIG", "mass": { "chemical_mass": 36099.0, "monoisotopic_mass": 36099.0 }, "refseq": {}, "gene_names": [ { "name": "C13orf42", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14" } ] } ], "protein_names": [ { "name": "Chromosome 13 open reading frame 42", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C13orf42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14", "locus": { "chromosome": "11", "start_pos": 16739761, "end_pos": 16719391, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047857", "url": "https://www.ensembl.org/id/ENSSSCG00000047857" } ] } } ], "crossref": [ { "id": "A0A5G2QQ14", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047857", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047857", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQ14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ14-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRKLHSVFHSGPQRKAEVAEGLYYDGASPGVRLIRSSSMYVVGDHGEKFSESLKKYKSASSMDTSLCYLQQEGDRAWMYSRTQDCLQYLQELLALRKKYLSSFNDLKPSRAPGISSSKSSRGGKKTPKDIKKATLKKYSQFSADVAEAIAFFDSIIAELDMEKWPRAAETDRQNEDVDFDVATSSREHSLHSNWILRAPRRHSEDVTVPVTDSQLHRTTDCRTTGTQRRLERHPIYLPKAVEGAFSTLKFKPKACKKDLRRSRQILFNFSGEGTDWDAELFALEPLVSLAEESPEAENPRGQWLLRERLWERTVP", "length": 316, "header": "tr|A0A5G2QQ14-1|A0A5G2QQ14_PIG Isoform 1 of Chromosome 13 open reading frame 42 OS=Sus scrofa OX=9823 GN=C13orf42 PE=4 SV=1 CANONICAL=A0A5G2QQ14-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ14-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14/entry", "sequence": { "sequence": "MLRKLHSVFHSGPQRKAEVAEGLYYDGASPGVRLIRSSSMYVVGDHGEKFSESLKKYKSASSMDTSLCYLQQEGDRAWMYSRTQDCLQYLQELLALRKKYLSSFNDLKPSRAPGISSSKSSRGGKKTPKDIKKATLKKYSQFSADVAEAIAFFDSIIAELDMEKWPRAAETDRQNEDVDFDVATSSREHSLHSNWILRAPRRHSEDVTVPVTDSQLHRTTDCRTTGTQRRLERHPIYLPKAVEGAFSTLKFKPKACKKDLRRSRQILFNFSGEGTDWDAELFALEPLVSLAEESPEAENPRGQWLLRERLWERTVP", "length": 316, "header": "tr|A0A5G2QQ14-1|A0A5G2QQ14_PIG Isoform 1 of Chromosome 13 open reading frame 42 OS=Sus scrofa OX=9823 GN=C13orf42 PE=4 SV=1 CANONICAL=A0A5G2QQ14-1" }, "locus": { "chromosome": "11", "start_pos": 16738757, "end_pos": 16719391, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067239.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067239.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066151.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066151.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ14", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ14" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 269, "end_pos": 271 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ29-1", "uniprot_ac": "A0A5G2QQ29", "uniprot_id": "A0A5G2QQ29_PIG", "mass": { "chemical_mass": 11574.0, "monoisotopic_mass": 11574.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQ29", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ29", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041656", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041656", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCFLAIYMSSLEKCLFRSYAHFLIGLLVFLILSCMSCLYILEINPMLVTLFANIFSYSVGCLFILFMVSFAMENFLNLIRPHVFNFCFYFHYSRRWI", "length": 97, "header": "tr|A0A5G2QQ29-1|A0A5G2QQ29_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ29-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29/entry", "sequence": { "sequence": "MCFLAIYMSSLEKCLFRSYAHFLIGLLVFLILSCMSCLYILEINPMLVTLFANIFSYSVGCLFILFMVSFAMENFLNLIRPHVFNFCFYFHYSRRWI", "length": 97, "header": "tr|A0A5G2QQ29-1|A0A5G2QQ29_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ29-1" }, "locus": { "chromosome": "16", "start_pos": 33210900, "end_pos": 33210610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088747.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088747.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067000.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067000.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 97, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ29" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ32-1", "uniprot_ac": "A0A5G2QQ32", "uniprot_id": "A0A5G2QQ32_PIG", "mass": { "chemical_mass": 74625.0, "monoisotopic_mass": 74625.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQ32", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ32", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042421", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042421", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLY", "length": 645, "header": "tr|A0A5G2QQ32-1|A0A5G2QQ32_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ32-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32/entry", "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLY", "length": 645, "header": "tr|A0A5G2QQ32-1|A0A5G2QQ32_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ32-1" }, "locus": { "chromosome": "4", "start_pos": 105210855, "end_pos": 105208921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083607.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083607.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064179.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064179.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ32-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 645, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ32-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ32" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQ32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ32" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 645, "start_aa": "Lys", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 370, "end_pos": 372 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ48-1", "uniprot_ac": "A0A5G2QQ48", "uniprot_id": "A0A5G2QQ48_PIG", "mass": { "chemical_mass": 7262.0, "monoisotopic_mass": 7262.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQ48", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ48", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048962", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048962", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQ48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ48-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHRAITPSAYLPSPDYYKRLDHLQQGLRDRYGLPGRGRGVVSNAVGIFCFLDHRNILTKEIMF", "length": 63, "header": "tr|A0A5G2QQ48-1|A0A5G2QQ48_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ48-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ48-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48/entry", "sequence": { "sequence": "MHRAITPSAYLPSPDYYKRLDHLQQGLRDRYGLPGRGRGVVSNAVGIFCFLDHRNILTKEIMF", "length": 63, "header": "tr|A0A5G2QQ48-1|A0A5G2QQ48_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ48-1" }, "locus": { "chromosome": "17", "start_pos": 28980205, "end_pos": 28975243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083143.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083143.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066191.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066191.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 6, "start_aa": "Thr", "end_pos": 6, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr6", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 63, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ48" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 6 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ50-1", "uniprot_ac": "A0A5G2QQ50", "uniprot_id": "A0A5G2QQ50_PIG", "mass": { "chemical_mass": 16713.0, "monoisotopic_mass": 16713.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Annexin-2 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQ50", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ50", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041495", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041495", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR38820", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38820", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38820:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38820:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQ50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQTVPRCVREPWDSAEDSQEPEALQILSSGDPGGWRLPLYPSLGQLSWDDQDVSRELLSTPCGLLRPFCPKHGPRAQSACRPSAEPLAPHTPTTPGTRRFVHWKRHQIKHSSQPRWKRSNQVLPTSSKLLGSHFSAQKRPPLSKGPQV", "length": 149, "header": "tr|A0A5G2QQ50-1|A0A5G2QQ50_PIG Isoform 1 of Annexin-2 receptor OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ50-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ50-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50/entry", "sequence": { "sequence": "MEQTVPRCVREPWDSAEDSQEPEALQILSSGDPGGWRLPLYPSLGQLSWDDQDVSRELLSTPCGLLRPFCPKHGPRAQSACRPSAEPLAPHTPTTPGTRRFVHWKRHQIKHSSQPRWKRSNQVLPTSSKLLGSHFSAQKRPPLSKGPQV", "length": 149, "header": "tr|A0A5G2QQ50-1|A0A5G2QQ50_PIG Isoform 1 of Annexin-2 receptor OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQ50-1" }, "locus": { "chromosome": "16", "start_pos": 27762868, "end_pos": 27761509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080975.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080975.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067020.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ50-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 149, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ50-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ50" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ59-1", "uniprot_ac": "A0A5G2QQ59", "uniprot_id": "A0A5G2QQ59_PIG", "mass": { "chemical_mass": 9790.0, "monoisotopic_mass": 9790.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC142", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59" } ] }, { "name": "MRPL53", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59" } ] } ], "protein_names": [ { "name": "Mitochondrial ribosomal protein L53", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC142", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59", "locus": { "chromosome": "3", "start_pos": 68572060, "end_pos": 68563944, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008270", "url": "https://www.ensembl.org/id/ENSSSCG00000008270" } ] } } ], "crossref": [ { "id": "A0A5G2QQ59", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008270", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008270", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQ59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAALARLGLRAVKQVRVQFCPFEKNVESTRRWASPDYARRSPHRPGDAHCLRLPHPGQGRGGERGQAQRQYRALTARKRPPTSRF", "length": 86, "header": "tr|A0A5G2QQ59-1|A0A5G2QQ59_PIG Isoform 1 of Mitochondrial ribosomal protein L53 OS=Sus scrofa OX=9823 GN=CCDC142 PE=4 SV=2 CANONICAL=A0A5G2QQ59-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59/entry", "sequence": { "sequence": "MAAALARLGLRAVKQVRVQFCPFEKNVESTRRWASPDYARRSPHRPGDAHCLRLPHPGQGRGGERGQAQRQYRALTARKRPPTSRF", "length": 86, "header": "tr|A0A5G2QQ59-1|A0A5G2QQ59_PIG Isoform 1 of Mitochondrial ribosomal protein L53 OS=Sus scrofa OX=9823 GN=CCDC142 PE=4 SV=2 CANONICAL=A0A5G2QQ59-1" }, "locus": { "chromosome": "3", "start_pos": 68572976, "end_pos": 68572415, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089075.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089075.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064204.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064204.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 86, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ59" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQ83-1", "uniprot_ac": "A0A5G2QQ83", "uniprot_id": "A0A5G2QQ83_PIG", "mass": { "chemical_mass": 50936.0, "monoisotopic_mass": 50936.0 }, "refseq": {}, "gene_names": [ { "name": "TTC23", "type": "recommended", "evidence": [ { "id": "A0A5G2QQ83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat domain 23", "type": "synonym", "evidence": [ { "id": "A0A5G2QQ83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC23", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83", "locus": { "chromosome": "1", "start_pos": 137886405, "end_pos": 137997131, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004813", "url": "https://www.ensembl.org/id/ENSSSCG00000004813" } ] } } ], "crossref": [ { "id": "A0A5G2QQ83", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ83", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004813", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004813", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14485", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14485", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14485:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14485:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QI81", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QI81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QI81-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QI81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRY0", "url": "https://www.uniprot.org/uniprotkb/F1SRY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQESQETHISNHLDEIVAAVSITPREKLQNKLPQTVLFQPPREKLHFCEEKARSYASSHEYKQALQELVRCVALTRICYGDSHWKLAEAHINLAQGYLQLSGLSLQAKQHAEKAKEILTNFIMPAYSDNTDVFKCSVELFHTMGRALLSLQKFKEASENLTKAERISKELLQCGRIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYIKISKGEKSLECVPILRELAGVEQALGFHEASINHFLQAHLIILGRNPSQEDAAISAHSVAHAAIVSGRPEHHDVAKQYFEESLAHLKDAKGMGKAKFLSIQDDYCHFLQVTGQKERATSILRESLEAKVAVFGDLSPEVAETYRLLGGADLAQGNQSGADKKLKKVKLQCRKMMIACSKTVARGWSKIMGETRDVDKDIEPTALGNSEGPEVAGKPRQPPKPRPAFRKGELQHGAGDSQA", "length": 456, "header": "tr|A0A5G2QQ83-1|A0A5G2QQ83_PIG Isoform 1 of Tetratricopeptide repeat domain 23 OS=Sus scrofa OX=9823 GN=TTC23 PE=4 SV=1 CANONICAL=A0A5G2QQ83-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83/entry", "sequence": { "sequence": "MQESQETHISNHLDEIVAAVSITPREKLQNKLPQTVLFQPPREKLHFCEEKARSYASSHEYKQALQELVRCVALTRICYGDSHWKLAEAHINLAQGYLQLSGLSLQAKQHAEKAKEILTNFIMPAYSDNTDVFKCSVELFHTMGRALLSLQKFKEASENLTKAERISKELLQCGRIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYIKISKGEKSLECVPILRELAGVEQALGFHEASINHFLQAHLIILGRNPSQEDAAISAHSVAHAAIVSGRPEHHDVAKQYFEESLAHLKDAKGMGKAKFLSIQDDYCHFLQVTGQKERATSILRESLEAKVAVFGDLSPEVAETYRLLGGADLAQGNQSGADKKLKKVKLQCRKMMIACSKTVARGWSKIMGETRDVDKDIEPTALGNSEGPEVAGKPRQPPKPRPAFRKGELQHGAGDSQA", "length": 456, "header": "tr|A0A5G2QQ83-1|A0A5G2QQ83_PIG Isoform 1 of Tetratricopeptide repeat domain 23 OS=Sus scrofa OX=9823 GN=TTC23 PE=4 SV=1 CANONICAL=A0A5G2QQ83-1" }, "locus": { "chromosome": "1", "start_pos": 137977605, "end_pos": 137886898, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073775.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073775.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066887.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066887.1" } ] } }, { "isoform_ac": "A0A8D0QI81-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QI81/entry", "sequence": { "sequence": "MQESQETHISNHLDEIVAAVSITPREKLQNKLPQTVLFQPPREKLHFCEEKARSYASSHEYKQALQELVRCVALTRICYGDSHWKLAEAHINLAQGYLQLSGLSLQAKQHAEKAKEILTNFIMPAYSDNTDVFKCSVELFHTMGRALLSLQKFKEASENLTKAERISKELLQCGRIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYIKISKGEKSLECVPILRELAGVEQALGFHEASINHFLQAHLIILGRNPSQEDAAISAHSVAHAAIVSGRPEHHDVAKQYFEESLAHLKDAKGMGKAKFLSIQDDYCHFLQVTGQKERATSILRESLEAKVAVFGDLSPEVAETYRLLGGADLAQGNQSGADKKLKKVKLQWLESPGSLLSPDQPSARASCSTVLGTARPEVQAWATPPSESFGHA", "length": 430, "header": "tr|A0A8D0QI81-1|A0A8D0QI81_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 23 OS=Sus scrofa OX=9823 GN=TTC23 PE=4 SV=1 CANONICAL=A0A5G2QQ83-1" }, "locus": { "chromosome": "1", "start_pos": 137977605, "end_pos": 137886849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066092.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066092.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039626.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039626.2" } ] } }, { "isoform_ac": "F1SRY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRY0/entry", "sequence": { "sequence": "MQESQETHISNHLDEIVAAVSITPREKLQNKLPQTVLFQPPREKLHFCEEKARSYASSHEYKQALQELVRCVALTRICYGDSHWKLAEAHINLAQGYLQLSGLSLQAKQHAEKAKEILTNFIMPAYSDNTDVFKCSVELFHTMGRALLSLQKFKEASENLTKAERISKELLQCGRIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYIKISKGEKSLECVPILRELAGVEQALGFHEASINHFLQAHLIILGRNPSQEDAAISAHSVAHAAIVSGRPEHHDVAKQYFEESLAHLKDAKGMGKAKFLSIQDDYCHFLQVTGQKERATSILRESLEAKVAVFGDLSPEVAETYRLLGGADLAQGNQSGADKKLKKVKLVQLTEK", "length": 390, "header": "tr|F1SRY0-1|F1SRY0_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 23 OS=Sus scrofa OX=9823 GN=TTC23 PE=4 SV=4 CANONICAL=A0A5G2QQ83-1" }, "locus": { "chromosome": "1", "start_pos": 137977605, "end_pos": 137910130, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005313.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005313.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005183.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005183.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 371, "end_pos": 373, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQ83-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 456, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQ83-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQ83" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 371, "end_pos": 373 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQB0-1", "uniprot_ac": "A0A5G2QQB0", "uniprot_id": "A0A5G2QQB0_PIG", "mass": { "chemical_mass": 28251.0, "monoisotopic_mass": 28251.0 }, "refseq": {}, "gene_names": [ { "name": "RAB6B", "type": "recommended", "evidence": [ { "id": "A0A5G2QQB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ] } ], "protein_names": [ { "name": "RAB6B, member RAS onco family", "type": "synonym", "evidence": [ { "id": "A0A5G2QQB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between active GTP-bound and inactive GDP-bound states. In their active state, drive transport of vesicular carriers from donor organelles to acceptor organelles to regulate the membrane traffic that maintains organelle identity and morphology. Recruits VPS13B to the Golgi membrane. Regulates the compacted morphology of the Golgi. Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells. Plays a role in neuron projection development.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S2#function" }, { "database": "UniProtKB", "id": "ARBA00055612", "url": "https://www.uniprot.org/uniprotkb/ARBA00055612#function" }, { "database": "UniProtKB", "id": "A0A4X1TQ08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQ08#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB6B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0", "locus": { "chromosome": "13", "start_pos": 75012268, "end_pos": 75075239, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036503", "url": "https://www.ensembl.org/id/ENSSSCG00000036503" } ] } } ], "crossref": [ { "id": "A0A5G2QQB0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036503", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036503", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01861", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01861", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1TQ08", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQ08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TQ08-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQ08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1S2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQRALACLRRDTGATKGNRGVTSAGARAHRGGRVSGRVIFLSPAPCSDRHQAGQTPGAPGQRGRLLLLMQPDHRLPLTLFACCVASYWLAS", "length": 254, "header": "tr|A0A5G2QQB0-1|A0A5G2QQB0_PIG Isoform 1 of RAB6B, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB6B PE=1 SV=2 CANONICAL=A0A5G2QQB0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TQ08-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQ08/entry", "sequence": { "sequence": "MYHLGRSWPLVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC", "length": 195, "header": "tr|A0A4X1TQ08-1|A0A4X1TQ08_PIG Computationally mapped isoform of Ras-related protein Rab-6B OS=Sus scrofa OX=9823 GN=RAB6B PE=1 SV=1 CANONICAL=A0A5G2QQB0-1" }, "locus": { "chromosome": "13", "start_pos": 75065129, "end_pos": 75016602, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083510.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083510.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063937.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063937.1" } ] } }, { "isoform_ac": "A0A5G2QQB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0/entry", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQRALACLRRDTGATKGNRGVTSAGARAHRGGRVSGRVIFLSPAPCSDRHQAGQTPGAPGQRGRLLLLMQPDHRLPLTLFACCVASYWLAS", "length": 254, "header": "tr|A0A5G2QQB0-1|A0A5G2QQB0_PIG Isoform 1 of RAB6B, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB6B PE=1 SV=2 CANONICAL=A0A5G2QQB0-1" }, "locus": { "chromosome": "13", "start_pos": 75074885, "end_pos": 75016531, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070320.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070320.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064255.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064255.2" } ] } }, { "isoform_ac": "A0A5G2R1S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S2/entry", "sequence": { "sequence": "MYPARSRNAKHPMRSWTTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC", "length": 199, "header": "tr|A0A5G2R1S2-1|A0A5G2R1S2_PIG Computationally mapped isoform of Ras-related protein Rab-6B OS=Sus scrofa OX=9823 GN=RAB6B PE=1 SV=2 CANONICAL=A0A5G2QQB0-1" }, "locus": { "chromosome": "13", "start_pos": 75045694, "end_pos": 75016602, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076830.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076830.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064478.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064478.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "myosin V binding", "id": "GO:0031489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031489", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "protein localization to Golgi membrane", "id": "GO:1903292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903292", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQB0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 254, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQB0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQB0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQD4-1", "uniprot_ac": "A0A5G2QQD4", "uniprot_id": "A0A5G2QQD4_PIG", "mass": { "chemical_mass": 17658.0, "monoisotopic_mass": 17658.0 }, "refseq": {}, "gene_names": [ { "name": "AP4S1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ] } ], "protein_names": [ { "name": "AP-4 complex subunit sigma-1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry#names_and_taxonomy" } ] }, { "name": "AP-4 adaptor complex subunit sigma-1", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry#names_and_taxonomy" } ] }, { "name": "Adaptor-related protein complex 4 subunit sigma-1", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry#names_and_taxonomy" } ] }, { "name": "Sigma-1 subunit of AP-4", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry#names_and_taxonomy" } ] }, { "name": "Sigma-4-adaptin", "type": "synonym", "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asymmetric localization of somatodendritic proteins in neurons. AP-4 is involved in the recognition and binding of tyrosine-based sorting signals found in the cytoplasmic part of cargos, but may also recognize other types of sorting signal.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T117", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T117#function" }, { "database": "UniProtKB", "id": "ARBA00053594", "url": "https://www.uniprot.org/uniprotkb/ARBA00053594#function" }, { "database": "UniProtKB", "id": "A0A8D1JIQ3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JIQ3#function" }, { "database": "UniProtKB", "id": "A0A8W4FBU1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU1#function" }, { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AP4S1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4", "locus": { "chromosome": "7", "start_pos": 68393285, "end_pos": 68471722, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001972", "url": "https://www.ensembl.org/id/ENSSSCG00000001972" } ] } } ], "crossref": [ { "id": "A0A5G2QQD4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001972", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001972", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14832", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14832", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154615", "url": "https://www.ncbi.nlm.nih.gov/gene/100154615", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11753", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11753", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1T117", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T117", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T117-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T117-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JIQ3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JIQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JIQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JIQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBU1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSFFILECPFLFGGIWKSVNLRHNSDPSHCSDNAGFLTHHTARELEMS", "length": 150, "header": "tr|A0A5G2QQD4-1|A0A5G2QQD4_PIG Isoform 1 of AP-4 complex subunit sigma-1 OS=Sus scrofa OX=9823 GN=AP4S1 PE=3 SV=1 CANONICAL=A0A5G2QQD4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T117-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T117/entry", "sequence": { "sequence": "MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKMSES", "length": 140, "header": "tr|A0A4X1T117-1|A0A4X1T117_PIG Computationally mapped isoform of AP complex subunit sigma OS=Sus scrofa OX=9823 GN=AP4S1 PE=1 SV=1 CANONICAL=A0A5G2QQD4-1" }, "locus": { "chromosome": "7", "start_pos": 68447491, "end_pos": 68426262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002205.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002205.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002153.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002153.3" } ] } }, { "isoform_ac": "A0A5G2QQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4/entry", "sequence": { "sequence": "MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSFFILECPFLFGGIWKSVNLRHNSDPSHCSDNAGFLTHHTARELEMS", "length": 150, "header": "tr|A0A5G2QQD4-1|A0A5G2QQD4_PIG Isoform 1 of AP-4 complex subunit sigma-1 OS=Sus scrofa OX=9823 GN=AP4S1 PE=3 SV=1 CANONICAL=A0A5G2QQD4-1" }, "locus": { "chromosome": "7", "start_pos": 68447491, "end_pos": 68425029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091080.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091080.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060493.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060493.1" } ] } }, { "isoform_ac": "A0A8D1JIQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JIQ3/entry", "sequence": { "sequence": "MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDENSYTPVFLIVKQGSLLEVQPQFPGPSV", "length": 130, "header": "tr|A0A8D1JIQ3-1|A0A8D1JIQ3_PIG Computationally mapped isoform of AP-4 complex subunit sigma-1 OS=Sus scrofa OX=9823 GN=AP4S1 PE=3 SV=1 CANONICAL=A0A5G2QQD4-1" }, "locus": { "chromosome": "7", "start_pos": 68447491, "end_pos": 68433375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075817.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075817.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061302.1" } ] } }, { "isoform_ac": "A0A8W4FBU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBU1/entry", "sequence": { "sequence": "MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSFFSAVSQVFRSTWQRQASPDQVLVLALEDDPTSV", "length": 138, "header": "tr|A0A8W4FBU1-1|A0A8W4FBU1_PIG Computationally mapped isoform of AP complex subunit sigma OS=Sus scrofa OX=9823 GN=AP4S1 PE=3 SV=1 CANONICAL=A0A5G2QQD4-1" }, "locus": { "chromosome": "7", "start_pos": 68447491, "end_pos": 68393288, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092406.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092406.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076789.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" }, { "name": "AP-4 adaptor complex", "id": "GO:0030124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030124", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQD4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQD4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 150, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQD4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQD4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQD4" }, { "id": "PF01217", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP complex mu/sigma subunit", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 105, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQH3-1", "uniprot_ac": "A0A5G2QQH3", "uniprot_id": "A0A5G2QQH3_PIG", "mass": { "chemical_mass": 8187.0, "monoisotopic_mass": 8187.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQH3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQH3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049810", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049810", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MECWCTSRLYVGGGRLHTGGGIFHILSQLISLLSIPEVFKEKPKVIISTPPCSLPTFWRILMKARLCSFHKR", "length": 72, "header": "tr|A0A5G2QQH3-1|A0A5G2QQH3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQH3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3/entry", "sequence": { "sequence": "MECWCTSRLYVGGGRLHTGGGIFHILSQLISLLSIPEVFKEKPKVIISTPPCSLPTFWRILMKARLCSFHKR", "length": 72, "header": "tr|A0A5G2QQH3-1|A0A5G2QQH3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQH3-1" }, "locus": { "chromosome": "14", "start_pos": 83320135, "end_pos": 83319666, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083247.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083247.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060528.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060528.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQH3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQH3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 72, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQH3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQH3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQJ7-1", "uniprot_ac": "A0A5G2QQJ7", "uniprot_id": "A0A5G2QQJ7_PIG", "mass": { "chemical_mass": 27186.0, "monoisotopic_mass": 27186.0 }, "refseq": { "ac": "XP_020938912", "name": "oxidoreductase HTATIP2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938912" }, "gene_names": [ { "name": "HTATIP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QQJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ] }, { "name": "HTATIP2", "type": "synonym", "evidence": [ { "id": "XP_020938912", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938912" } ] } ], "protein_names": [ { "name": "Protein HTATIP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QQJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7/entry#names_and_taxonomy" } ] }, { "name": "oxidoreductase HTATIP2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020938912", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938912" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HTATIP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7", "locus": { "chromosome": "2", "start_pos": 39034013, "end_pos": 39055315, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013349", "url": "https://www.ensembl.org/id/ENSSSCG00000013349" } ] } } ], "crossref": [ { "id": "A0A5G2QQJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05250", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05250", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521603", "url": "https://www.ncbi.nlm.nih.gov/gene/100521603", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521603", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521603", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFY5", "url": "https://www.orthodb.org/?gene=F1SFY5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14097", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14097", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14097:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14097:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13460", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13460", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938912", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938912", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1T437", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T437", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T437-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T437-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFY5", "url": "https://www.uniprot.org/uniprotkb/F1SFY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSLKT", "length": 242, "header": "tr|A0A5G2QQJ7-1|A0A5G2QQJ7_PIG Isoform 1 of Protein HTATIP2 OS=Sus scrofa OX=9823 GN=HTATIP2 PE=1 SV=1 CANONICAL=A0A5G2QQJ7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T437-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T437/entry", "sequence": { "sequence": "MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAGEVEARIEELKFDRYSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSLKT", "length": 196, "header": "tr|A0A4X1T437-1|A0A4X1T437_PIG Computationally mapped isoform of Protein HTATIP2 OS=Sus scrofa OX=9823 GN=HTATIP2 PE=1 SV=1 CANONICAL=A0A5G2QQJ7-1" }, "locus": { "chromosome": "2", "start_pos": 39051605, "end_pos": 39036051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071062.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071062.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068008.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068008.1" } ] } }, { "isoform_ac": "A0A5G2QQJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7/entry", "sequence": { "sequence": "MAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSLKT", "length": 242, "header": "tr|A0A5G2QQJ7-1|A0A5G2QQJ7_PIG Isoform 1 of Protein HTATIP2 OS=Sus scrofa OX=9823 GN=HTATIP2 PE=1 SV=1 CANONICAL=A0A5G2QQJ7-1" }, "locus": { "chromosome": "2", "start_pos": 39051605, "end_pos": 39036051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066747.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066747.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067007.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067007.1" } ] } }, { "isoform_ac": "F1SFY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFY5/entry", "sequence": { "sequence": "MSRPVALSAAGAAAAGAVLVAALLLLRPEDEGLGAGSSMAETEALPKLREDFRMQNKSVFILGASGETGRVLLKEILEQSLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHEVGFCCLGTTRRKAGAEGFVRVDRDYILKSAELAKAGGCKHFNLLSAKGADKSSNFLYLQVKGEVEARIEELKFDRYSIFRPGVLLCDRQESRPGEWLVRKFFGSLPESWASGHSVPVLTLVRAMLNNTVRPSDQKKELLENKAILDLGKADGSLKT", "length": 280, "header": "tr|F1SFY5-1|F1SFY5_PIG Computationally mapped isoform of Protein HTATIP2 OS=Sus scrofa OX=9823 GN=HTATIP2 PE=1 SV=4 CANONICAL=A0A5G2QQJ7-1" }, "locus": { "chromosome": "2", "start_pos": 39052071, "end_pos": 39036051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014578.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014578.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014183.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014183.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521603", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521603", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "pmid": "" }, { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of programmed cell death", "id": "GO:0043068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043068", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 242, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQJ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQJ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQJ7" }, { "id": "PF13460", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13460" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAD(P)-binding", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 173, "start_aa": "Gly", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 212, "end_pos": 214 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQK1-1", "uniprot_ac": "A0A5G2QQK1", "uniprot_id": "A0A5G2QQK1_PIG", "mass": { "chemical_mass": 29042.0, "monoisotopic_mass": 29042.0 }, "refseq": { "ac": "XP_020950013", "name": "coiled-coil domain-containing glutamate-rich protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950013" }, "gene_names": [ { "name": "CCER2", "type": "recommended", "evidence": [ { "id": "A0A5G2QQK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1" } ] }, { "name": "CCER2", "type": "synonym", "evidence": [ { "id": "XP_020950013", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950013" } ] } ], "protein_names": [ { "name": "Coiled-coil glutamate rich protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QQK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing glutamate-rich protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020950013", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950013" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCER2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1", "locus": { "chromosome": "6", "start_pos": 47712765, "end_pos": 47715620, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047060", "url": "https://www.ensembl.org/id/ENSSSCG00000047060" } ] } } ], "crossref": [ { "id": "A0A5G2QQK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047060", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047060", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110260984", "url": "https://www.ncbi.nlm.nih.gov/gene/110260984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "XP_020950013", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950013", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QQK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRRGAASVLLLLLLLLGAATAAPLSPRPSKEELTRCVAEVVTEVLMLGQARQGPCVALLRKEMCETEPYGCGATEETGLLVGDLKKQEPGRTRSSQEARDKEEEEATERTHTSEVREQAIREQLHSRLRQEDHEEEEGKRGPLETFEGLWKQRPEGGEGPQKRVAEQACDEETAQFEAEEKGVQVLGGGRSLWQEPQAGGGERHEDHHRLRQLEGERQQEKEDASNREEHDAARLGRMREELKKVTEMLGEELRREG", "length": 258, "header": "tr|A0A5G2QQK1-1|A0A5G2QQK1_PIG Isoform 1 of Coiled-coil glutamate rich protein 2 OS=Sus scrofa OX=9823 GN=CCER2 PE=4 SV=2 CANONICAL=A0A5G2QQK1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1/entry", "sequence": { "sequence": "MPRRGAASVLLLLLLLLGAATAAPLSPRPSKEELTRCVAEVVTEVLMLGQARQGPCVALLRKEMCETEPYGCGATEETGLLVGDLKKQEPGRTRSSQEARDKEEEEATERTHTSEVREQAIREQLHSRLRQEDHEEEEGKRGPLETFEGLWKQRPEGGEGPQKRVAEQACDEETAQFEAEEKGVQVLGGGRSLWQEPQAGGGERHEDHHRLRQLEGERQQEKEDASNREEHDAARLGRMREELKKVTEMLGEELRREG", "length": 258, "header": "tr|A0A5G2QQK1-1|A0A5G2QQK1_PIG Isoform 1 of Coiled-coil glutamate rich protein 2 OS=Sus scrofa OX=9823 GN=CCER2 PE=4 SV=2 CANONICAL=A0A5G2QQK1-1" }, "locus": { "chromosome": "6", "start_pos": 47715421, "end_pos": 47713031, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074998.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074998.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067012.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067012.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQK1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 258, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQK1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQK1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQL0-1", "uniprot_ac": "A0A5G2QQL0", "uniprot_id": "A0A5G2QQL0_PIG", "mass": { "chemical_mass": 148818.0, "monoisotopic_mass": 148818.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QQL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QQL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000049232", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049232", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QQL0-1|A0A5G2QQL0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQL0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QQL0-1|A0A5G2QQL0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQL0-1" }, "locus": { "chromosome": "1", "start_pos": 193053612, "end_pos": 193049797, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079794.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079794.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060568.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060568.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL0" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQM5-1", "uniprot_ac": "A0A5G2QQM5", "uniprot_id": "A0A5G2QQM5_PIG", "mass": { "chemical_mass": 39847.0, "monoisotopic_mass": 39847.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051391", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051391", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NPVNFTIFNSSEPKWKEGFKISILIDGRGLDPGAVLHFQRITFALQAASHSVFHSFYEEIRNTPPPIPATTKNLFLALAETIAQTLKVSSCYVCGGTNTGDHWPWQARELDPLEPHNETAYPQLTNGVWLLRTAIIGKNCLARRGGRFNVSVGSLTCLGLRYYNLTAQKTQWWSSSNCSEPKPNPLSTFSHLRQAWEDISTNMQWRAPKGLYWICGKMAYSILPPNWAGACVLGTIRPSFFLLPLSLGEQLGVPIYRAQGAQRDWRSLQIGDWEDDEWPPEWIIQYYGPATWTEDGSWGYRTPIYMLNHIIRLQAVLELITNDTARALTILAQQQTKMHSAIYQNRLALDY", "length": 351, "header": "tr|A0A5G2QQM5-1|A0A5G2QQM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQM5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5/entry", "sequence": { "sequence": "NPVNFTIFNSSEPKWKEGFKISILIDGRGLDPGAVLHFQRITFALQAASHSVFHSFYEEIRNTPPPIPATTKNLFLALAETIAQTLKVSSCYVCGGTNTGDHWPWQARELDPLEPHNETAYPQLTNGVWLLRTAIIGKNCLARRGGRFNVSVGSLTCLGLRYYNLTAQKTQWWSSSNCSEPKPNPLSTFSHLRQAWEDISTNMQWRAPKGLYWICGKMAYSILPPNWAGACVLGTIRPSFFLLPLSLGEQLGVPIYRAQGAQRDWRSLQIGDWEDDEWPPEWIIQYYGPATWTEDGSWGYRTPIYMLNHIIRLQAVLELITNDTARALTILAQQQTKMHSAIYQNRLALDY", "length": 351, "header": "tr|A0A5G2QQM5-1|A0A5G2QQM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQM5-1" }, "locus": { "chromosome": "X", "start_pos": 71398025, "end_pos": 71396973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081881.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081881.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066347.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066347.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 351, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQM5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 322, "end_pos": 324 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQN1-1", "uniprot_ac": "A0A5G2QQN1", "uniprot_id": "A0A5G2QQN1_PIG", "mass": { "chemical_mass": 10760.0, "monoisotopic_mass": 10760.0 }, "refseq": { "ac": "XP_020926649", "name": "non-histone chromosomal protein HMG-14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926649" }, "gene_names": [ { "name": "HMGN1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ] }, { "name": "HMGN1", "type": "synonym", "evidence": [ { "id": "XP_020926649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926649" } ] } ], "protein_names": [ { "name": "High mobility group nucleosome binding domain 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QQN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1/entry#names_and_taxonomy" } ] }, { "name": "non-histone chromosomal protein HMG-14", "type": "synonym", "evidence": [ { "id": "XP_020926649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926649" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HMGN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1", "locus": { "chromosome": "13", "start_pos": 202905233, "end_pos": 202943575, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033733", "url": "https://www.ensembl.org/id/ENSSSCG00000033733" } ] } } ], "crossref": [ { "id": "A0A5G2QQN1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100625838", "url": "https://www.ncbi.nlm.nih.gov/gene/100625838", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625838", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625838", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CHWPEGA", "url": "https://omabrowser.org/oma/group/CHWPEGA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQN1", "url": "https://www.orthodb.org/?gene=A0A5G2QQN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23087:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23087:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01101", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01101", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926649", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926649", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B4S0", "url": "https://www.uniprot.org/uniprotkb/A0A287B4S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R582", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R582", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R582-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R582-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVEAKPKKAAGKDKASDKKVQTKGKRGAKGKQAEVTKQEMKEDLPAENGETKSEESPASDEAGEKEAKSD", "length": 101, "header": "tr|A0A5G2QQN1-1|A0A5G2QQN1_PIG Isoform 1 of High mobility group nucleosome binding domain 1 OS=Sus scrofa OX=9823 GN=HMGN1 PE=1 SV=1 CANONICAL=A0A5G2QQN1-1" }, "isoforms": [ { "isoform_ac": "A0A287B4S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4S0/entry", "sequence": { "sequence": "RPASPIPGAGRGTQLRRREERQRPGSPDSRRLSARRGPQAPGTRPRPRHDAQEEGQLRRGGGKGGAKRRSARLSAKPAPAKVEAKPKKAAGKDKASDKKVQTKGKRGAKGKQAEVTKQEMKEDLPAENGETKSEESPASDEAGEKEAKSD", "length": 150, "header": "tr|A0A287B4S0-1|A0A287B4S0_PIG Computationally mapped isoform of High mobility group nucleosome binding domain 1 OS=Sus scrofa OX=9823 GN=HMGN1 PE=1 SV=2 CANONICAL=A0A5G2QQN1-1" }, "locus": { "chromosome": "13", "start_pos": 202943497, "end_pos": 202937122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039191.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039191.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051428.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051428.2" } ] } }, { "isoform_ac": "A0A5G2QQN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1/entry", "sequence": { "sequence": "MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVEAKPKKAAGKDKASDKKVQTKGKRGAKGKQAEVTKQEMKEDLPAENGETKSEESPASDEAGEKEAKSD", "length": 101, "header": "tr|A0A5G2QQN1-1|A0A5G2QQN1_PIG Isoform 1 of High mobility group nucleosome binding domain 1 OS=Sus scrofa OX=9823 GN=HMGN1 PE=1 SV=1 CANONICAL=A0A5G2QQN1-1" }, "locus": { "chromosome": "13", "start_pos": 202943195, "end_pos": 202937122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067587.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067587.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067217.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067217.1" } ] } }, { "isoform_ac": "A0A5G2R582-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R582/entry", "sequence": { "sequence": "MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVEAKPKKAAGKDKASDKKVQTKGKRGAKGKQAEVTKQEMKEDLPAENDATVSRRSLHPESWSLAVNCTESLLPLQGHTHGIWTLSNRSCRC", "length": 123, "header": "tr|A0A5G2R582-1|A0A5G2R582_PIG Computationally mapped isoform of High mobility group nucleosome binding domain 1 OS=Sus scrofa OX=9823 GN=HMGN1 PE=3 SV=1 CANONICAL=A0A5G2QQN1-1" }, "locus": { "chromosome": "13", "start_pos": 202943195, "end_pos": 202906391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086300.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086300.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072384.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072384.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625838", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P05114-1", "protein_name": "Non-histone chromosomal protein HMG-14", "gene_name": "HMGN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD", "length": 100 }, "evidence": [ { "id": "A0A5G2QQN1", "url": "https://omabrowser.org/oma/group/A0A5G2QQN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "pmid": "" }, { "name": "nucleosomal DNA binding", "id": "GO:0031492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031492", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQN1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQN1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQN1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQN2-1", "uniprot_ac": "A0A5G2QQN2", "uniprot_id": "A0A5G2QQN2_PIG", "mass": { "chemical_mass": 33793.0, "monoisotopic_mass": 33793.0 }, "refseq": { "ac": "XP_003356542", "name": "zinc finger protein 691 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356542" }, "gene_names": [ { "name": "ZNF691", "type": "recommended", "evidence": [ { "id": "A0A5G2QQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ] }, { "name": "ZNF691", "type": "synonym", "evidence": [ { "id": "XP_003356542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356542" } ] } ], "protein_names": [ { "name": "Zinc finger protein 691", "type": "recommended", "evidence": [ { "id": "A0A5G2QQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 691 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003356542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356542" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF691", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2", "locus": { "chromosome": "6", "start_pos": 168585944, "end_pos": 168596351, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040559", "url": "https://www.ensembl.org/id/ENSSSCG00000040559" } ] } } ], "crossref": [ { "id": "A0A5G2QQN2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQN2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040559", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040559", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100628198", "url": "https://www.ncbi.nlm.nih.gov/gene/100628198", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100628198", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628198", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTHMGEQ", "url": "https://omabrowser.org/oma/group/KTHMGEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BJQ8", "url": "https://www.orthodb.org/?gene=A0A287BJQ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQN2", "url": "https://www.orthodb.org/?gene=A0A5G2QQN2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003356542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356542", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BJQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRCVITTGSEMGSEKEQSPERHLPEEGERGSKPRSVDASEGFRIPDGEKEHGQESLSERPQGDRRKEPWRRVTVPAREPDVRPAPPRPEADEKPFVCAQCGKTFSNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYKCPNCEESFRRHSDLTTHQQDHLGRRPFRCDLCSKSFGQSSALAVHYRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECAECGRTFSDISNFGAHQRTHRGERPYRCTLCGKHFSRSSNLIRHQKTHRGEQAGKGSG", "length": 296, "header": "tr|A0A5G2QQN2-1|A0A5G2QQN2_PIG Isoform 1 of Zinc finger protein 691 OS=Sus scrofa OX=9823 GN=ZNF691 PE=3 SV=1 CANONICAL=A0A5G2QQN2-1" }, "isoforms": [ { "isoform_ac": "A0A287BJQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ8/entry", "sequence": { "sequence": "MGSEKEQSPERHLPEEGERGSKPRSVDASEGFRIPDGEKEHGQESLSERPQGDRRKEPWRRVTVPAREPDVRPAPPRPEADEKPFVCAQCGKTFSNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYKCPNCEESFRRHSDLTTHQQDHLGRRPFRCDLCSKSFGQSSALAVHYRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECAECGRTFSDISNFGAHQRTHRGERPYRCTLCGKHFSRSSNLIRHQKTHRGEQAGKGSG", "length": 285, "header": "tr|A0A287BJQ8-1|A0A287BJQ8_PIG Computationally mapped isoform of Zinc finger protein 691 OS=Sus scrofa OX=9823 GN=ZNF691 PE=3 SV=1 CANONICAL=A0A5G2QQN2-1" }, "locus": { "chromosome": "6", "start_pos": 168592217, "end_pos": 168591363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044443.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044443.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056761.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056761.1" } ] } }, { "isoform_ac": "A0A5G2QQN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2/entry", "sequence": { "sequence": "MIRCVITTGSEMGSEKEQSPERHLPEEGERGSKPRSVDASEGFRIPDGEKEHGQESLSERPQGDRRKEPWRRVTVPAREPDVRPAPPRPEADEKPFVCAQCGKTFSNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYKCPNCEESFRRHSDLTTHQQDHLGRRPFRCDLCSKSFGQSSALAVHYRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECAECGRTFSDISNFGAHQRTHRGERPYRCTLCGKHFSRSSNLIRHQKTHRGEQAGKGSG", "length": 296, "header": "tr|A0A5G2QQN2-1|A0A5G2QQN2_PIG Isoform 1 of Zinc finger protein 691 OS=Sus scrofa OX=9823 GN=ZNF691 PE=3 SV=1 CANONICAL=A0A5G2QQN2-1" }, "locus": { "chromosome": "6", "start_pos": 168593452, "end_pos": 168591363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094856.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094856.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078335.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078335.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100628198", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628198", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z9R6-1", "protein_name": "Zinc finger protein 691", "gene_name": "Ermap", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVHMERLSPSGSWLVGCLFTIAIFQLPAQGSGSADKFYMAPLGSTANLSCPLRLWPNMAISQMRWHRPTHPPHPQAVHMFQDGQNSTEDLMPEYKGRTALVRDAHKGSYILQISNVRFEDRGLYQCQVWVGNSSQEDNVTLQVAVLGSDPYIHVKGYDAGWMELVCQSMGWFPEPRTEWRDPTGKALLSLSETHTLDEAGLFRTAVSSRIRGNALGNVSCTIRNKVLGQEKTTAMLITAPDPGSLSSPAVALSVVLPILGLLILLGIGLLCKQKKSREKLLYEQVMEVENLLEDHAKEKGRLHKALKKLRSELKLKRAAANAGWRRARLHFVAVTLDPDTAHPKLVLSEDRRCVRLGNRKRSVPDNPERFDFVVSVLGSEYFTTGCHYWEVYVGEKTKWILGVCSESVSRKGKVTASPANGHWLVRQSRGNEYEALTSPQTSFRLKESPKCVGIFLDYEAGVISFFNVTDKSHIFTFTHTFSSPLRPFFEPCLHDEGKNTAPLIICTELQKSEESIAPKQEGKGRANGDVSLKGPEMGSEKEQSPGAHLPEEGEGAKPWRVDDSKDSQTTSGEEHGQESLLEGLHEQHSQKPWRKVTTQAGGPGDPMTFSSPETDEKPFTCAQCGKAFNNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYQCARCQESFRRRSDLTTHQQDHLGQRPYRCDICGKSFSQSSTLAVHHRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECTECGRTFSDISNFGAHQRTHRGERPYRCTLCGKHFSRSSNLIRHQKTHLGEQDEKDSS", "length": 820 }, "evidence": [ { "id": "A0A5G2QQN2", "url": "https://omabrowser.org/oma/group/A0A5G2QQN2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N5Q1-1", "protein_name": "Zinc finger protein 691", "gene_name": "ZNF691", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVGSPSVSVPVLLIHPASPDSKTTFSMKLLIPELFREICLCHQNSHGTVFITGVALKSTGFGAMGMAPSSATHLVCALGRITSFLLRLELNLLHLHDSFWSWWPMTLHCTIKSFRGSEMGSEKEQSPEQHLPEEGERGNKPWRVDDSKVPDGEKEPGQANPSEAPQGPSPEEPTQEVAVSAAEPEDLSAHRRPEVDEKPFVCVQCGKTFNNTSNLRTHQRIHTGEKPYQCSECGKSFSRSSNRIRHERIHLEEKHYKCPNCEQSFRRHADLTTHQQDHLGRRPFRCDLCGKSFGQSSALAVHYRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECTECGRTFSDISNFGAHQRTHRGEKPYRCTACGKHFSRSSNLIRHQKTHRGEQAGRESS", "length": 400 }, "evidence": [ { "id": "A0A5G2QQN2", "url": "https://omabrowser.org/oma/group/A0A5G2QQN2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HFF1-1", "protein_name": "Zinc finger protein 691", "gene_name": "Znf691", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGSEKEQSPEAHLPEEGEAGKPWRVDGSEGSQIAYGEEHGQTSLSKGLQGTHPKTPCQKVTARAGGPGKPIAFSSPEADEKPFICVQCGKTFNNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYQCAKCQESFRRRSDLTTHQQDHLGQRPYRCDICGKSFSQSATLAVHHRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECTECGRTFSDISNFGAHQRTHRGEKPYRCTLCGKHFSRSSNLIRHQKTHLGEQDEKDSS", "length": 283 }, "evidence": [ { "id": "A0A5G2QQN2", "url": "https://omabrowser.org/oma/group/A0A5G2QQN2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3TDE8-1", "protein_name": "Zinc finger protein 691", "gene_name": "Znf691", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSEKEQRPEAHLPEEGEGAKPWRVDGSKDSQITPREDHGQESLLAGLHGTHPPKTRQKVTAQAGGPGDPMLFSSPETDEKLFICAQCGKTFNNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYQCAKCQESFRRRSDLTTHQQDHLGQRPYRCDICGKSFTQSSTLAVHHRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECTECGRTFSDISNFGAHQRTHRGEKPYRCTLCGKHFSRSSNLIRHQKTHLGEQDEKDFS", "length": 283 }, "evidence": [ { "id": "A0A5G2QQN2", "url": "https://omabrowser.org/oma/group/A0A5G2QQN2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VV52-2", "protein_name": "Zinc finger protein 691", "gene_name": "ZNF691", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLCSPTHSAEMSLFLQGPEEMLPLSSEGSEMGSEKEQSPEPHLPEEGEGGKPWRVDDSEGSWIPPGEKEHGQESLSDELQETHPKKPWQKVTVRARELGDPIAHPRHEADEKPFICAQCGKTFNNTSNLRTHQRIHTGEKPYKCSECGKSFSRSSNRIRHERIHLEEKHYKCPKCQESFRRRSDLTTHQQDHLGKRPYRCDICGKSFSQSATLAVHHRTHLEPAPYICCECGKSFSNSSSFGVHHRTHTGERPYECTECGRTFSDISNFGAHQRTHRGEKPYRCTVCGKHFSRSSNLIRHQKTHLGEQAGKDSS", "length": 315 }, "evidence": [ { "id": "A0A5G2QQN2", "url": "https://omabrowser.org/oma/group/A0A5G2QQN2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQN2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 296, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQN2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQN2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 123, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 219, "end_pos": 221 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQK3-1", "uniprot_ac": "A0A5G2QQK3", "uniprot_id": "A0A5G2QQK3_PIG", "mass": { "chemical_mass": 21291.0, "monoisotopic_mass": 21291.0 }, "refseq": {}, "gene_names": [ { "name": "RAC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QQK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "A0A5G2QQK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "A0A5G2QQK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3", "locus": { "chromosome": "3", "start_pos": 4781780, "end_pos": 4803543, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035090", "url": "https://www.ensembl.org/id/ENSSSCG00000035090" } ] } } ], "crossref": [ { "id": "A0A5G2QQK3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035090", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035090", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01871", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01871", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114604", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114604", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1257604", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1433557", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1433557", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2424491", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2424491", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871796", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-389359", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389359", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928662", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928662", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928665", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928665", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-399954", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399954", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4086400", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086400", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416550", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416550", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4420097", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-445144", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445144", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5218920", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218920", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625740", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625970", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625970", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5626467", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626467", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5627123", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627123", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663213", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668599", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668599", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8849471", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849471", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8875555", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875555", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9032759", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9032759", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9748787", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9748787", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9958810", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958810", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9958825", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958825", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B4G4", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI56", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI56-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTARIAFIAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPKPRGAVFRPAGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL", "length": 189, "header": "tr|A0A5G2QQK3-1|A0A5G2QQK3_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAC1 PE=1 SV=2 CANONICAL=A0A5G2QQK3-1" }, "isoforms": [ { "isoform_ac": "A0A287B4G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G4/entry", "sequence": { "sequence": "MPFPENISPRYIQEMKVKPTVKPRDWIIFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL", "length": 184, "header": "tr|A0A287B4G4-1|A0A287B4G4_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAC1 PE=1 SV=2 CANONICAL=A0A5G2QQK3-1" }, "locus": { "chromosome": "3", "start_pos": 4793361, "end_pos": 4783268, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039540.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039540.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051179.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051179.2" } ] } }, { "isoform_ac": "A0A5G2QQK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3/entry", "sequence": { "sequence": "MTARIAFIAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPKPRGAVFRPAGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL", "length": 189, "header": "tr|A0A5G2QQK3-1|A0A5G2QQK3_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAC1 PE=1 SV=2 CANONICAL=A0A5G2QQK3-1" }, "locus": { "chromosome": "3", "start_pos": 4793472, "end_pos": 4783268, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064350.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064350.2" } ] } }, { "isoform_ac": "A0A5G2QVC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC6/entry", "sequence": { "sequence": "SQWAAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGRKPRGARSAWPARGRKAVFLFDEAIRAVLCPPPVKKRKRKCLLL", "length": 186, "header": "tr|A0A5G2QVC6-1|A0A5G2QQK3_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAC1 PE=1 SV=1 CANONICAL=A0A5G2QQK3-1" }, "locus": { "chromosome": "3", "start_pos": 4793910, "end_pos": 4783268, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091362.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091362.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062132.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062132.1" } ] } }, { "isoform_ac": "A0A8W4FI56-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI56/entry", "sequence": { "sequence": "MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDRPSRGKDKLADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL", "length": 210, "header": "tr|A0A8W4FI56-1|A0A8W4FI56_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAC1 PE=1 SV=1 CANONICAL=A0A5G2QQK3-1" }, "locus": { "chromosome": "3", "start_pos": 4803299, "end_pos": 4783268, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095066.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095066.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077998.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077998.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-114604", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114604", "resource": "Reactome", "description": "GPVI-mediated activation cascade" }, { "id": "R-SSC-1257604", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "resource": "Reactome", "description": "PIP3 activates AKT signaling" }, { "id": "R-SSC-1433557", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1433557", "resource": "Reactome", "description": "Signaling by SCF-KIT" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-2424491", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2424491", "resource": "Reactome", "description": "DAP12 signaling" }, { "id": "R-SSC-2871796", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "resource": "Reactome", "description": "FCERI mediated MAPK activation" }, { "id": "R-SSC-389359", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389359", "resource": "Reactome", "description": "CD28 dependent Vav1 pathway" }, { "id": "R-SSC-3928662", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928662", "resource": "Reactome", "description": "EPHB-mediated forward signaling" }, { "id": "R-SSC-3928664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928664", "resource": "Reactome", "description": "Ephrin signaling" }, { "id": "R-SSC-3928665", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928665", "resource": "Reactome", "description": "EPH-ephrin mediated repulsion of cells" }, { "id": "R-SSC-399954", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399954", "resource": "Reactome", "description": "Sema3A PAK dependent Axon repulsion" }, { "id": "R-SSC-4086400", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086400", "resource": "Reactome", "description": "PCP/CE pathway" }, { "id": "R-SSC-416550", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416550", "resource": "Reactome", "description": "Sema4D mediated inhibition of cell attachment and migration" }, { "id": "R-SSC-4420097", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "resource": "Reactome", "description": "VEGFA-VEGFR2 Pathway" }, { "id": "R-SSC-445144", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445144", "resource": "Reactome", "description": "Signal transduction by L1" }, { "id": "R-SSC-5218920", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218920", "resource": "Reactome", "description": "VEGFR2 mediated vascular permeability" }, { "id": "R-SSC-5625740", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "resource": "Reactome", "description": "RHO GTPases activate PKNs" }, { "id": "R-SSC-5625900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625900", "resource": "Reactome", "description": "RHO GTPases activate CIT" }, { "id": "R-SSC-5625970", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625970", "resource": "Reactome", "description": "RHO GTPases activate KTN1" }, { "id": "R-SSC-5626467", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626467", "resource": "Reactome", "description": "RHO GTPases activate IQGAPs" }, { "id": "R-SSC-5627123", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627123", "resource": "Reactome", "description": "RHO GTPases activate PAKs" }, { "id": "R-SSC-5663213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "resource": "Reactome", "description": "RHO GTPases Activate WASPs and WAVEs" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-5668599", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668599", "resource": "Reactome", "description": "RHO GTPases Activate NADPH Oxidases" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-6811558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "resource": "Reactome", "description": "PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling" }, { "id": "R-SSC-8849471", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849471", "resource": "Reactome", "description": "PTK6 Regulates RHO GTPases, RAS GTPase and MAP kinases" }, { "id": "R-SSC-8875555", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875555", "resource": "Reactome", "description": "MET activates RAP1 and RAC1" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9032759", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9032759", "resource": "Reactome", "description": "NTRK2 activates RAC1" }, { "id": "R-SSC-9748787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9748787", "resource": "Reactome", "description": "Azathioprine ADME" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" }, { "id": "R-SSC-9958810", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958810", "resource": "Reactome", "description": "SRC activates STAT3 in a quantitative manner, through Cadherin-11 (CDH11), RAC1 and gp130 (IL6ST)" }, { "id": "R-SSC-9958825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958825", "resource": "Reactome", "description": "Activation of STAT3 by cadherin engagement" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "thioesterase binding", "id": "GO:0031996", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031996", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "GTP-dependent protein binding", "id": "GO:0030742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030742", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 41, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "negative regulation of fibroblast migration", "id": "GO:0010764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010764", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of ovarian follicle development", "id": "GO:2000386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000386", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of receptor signaling pathway via JAK-STAT", "id": "GO:0046425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046425", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "sphingosine-1-phosphate receptor signaling pathway", "id": "GO:0003376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003376", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "forebrain development", "id": "GO:0030900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030900", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "response to lipopolysaccharide", "id": "GO:0032496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032496", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032956", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "neuron migration", "id": "GO:0001764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001764", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of endothelial cell migration", "id": "GO:0010595", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010595", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of insulin secretion involved in cellular response to glucose stimulus", "id": "GO:0035774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035774", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "Rac protein signal transduction", "id": "GO:0016601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016601", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of stress fiber assembly", "id": "GO:0051496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051496", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "lamellipodium assembly", "id": "GO:0030032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030032", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of focal adhesion assembly", "id": "GO:0051894", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051894", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cell chemotaxis", "id": "GO:0060326", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060326", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of substrate adhesion-dependent cell spreading", "id": "GO:1900026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900026", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "engulfment of apoptotic cell", "id": "GO:0043652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043652", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "ruffle assembly", "id": "GO:0097178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "establishment or maintenance of cell polarity", "id": "GO:0007163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007163", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "hepatocyte growth factor receptor signaling pathway", "id": "GO:0048012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "motor neuron axon guidance", "id": "GO:0008045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008045", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cortical cytoskeleton organization", "id": "GO:0030865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030865", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "non-canonical Wnt signaling pathway", "id": "GO:0035567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of neutrophil migration", "id": "GO:1902622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902622", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of lamellipodium assembly", "id": "GO:0010591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010591", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of neutrophil chemotaxis", "id": "GO:0090023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090023", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle endocytosis", "id": "GO:1900242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900242", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of cell adhesion involved in heart morphogenesis", "id": "GO:0061344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061344", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "localization within membrane", "id": "GO:0051668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051668", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "midbrain dopaminergic neuron differentiation", "id": "GO:1904948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904948", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "positive regulation of bicellular tight junction assembly", "id": "GO:1903348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903348", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "superoxide anion generation", "id": "GO:0042554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042554", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cell projection assembly", "id": "GO:0030031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of respiratory burst", "id": "GO:0060263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060263", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "negative regulation of interleukin-23 production", "id": "GO:0032707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032707", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "regulation of postsynapse assembly", "id": "GO:0150052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150052", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 23, "go_terms": [ { "name": "NADPH oxidase complex", "id": "GO:0043020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "presynaptic membrane", "id": "GO:0042734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042734", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "kinocilium", "id": "GO:0060091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060091", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" }, { "name": "pericentriolar material", "id": "GO:0000242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000242", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-1011598", "name": "DOCKs bind to RhoGEFs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1011598", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1011598" } ] }, { "id": "R-SSC-114542", "name": "RAC1,RAC2,RHOG activate PI3K", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-114542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114542" } ] }, { "id": "R-SSC-1433415", "name": "Activation of RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1433415", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1433415" } ] }, { "id": "R-SSC-2029451", "name": "Activation of RAC1 by VAV", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029451", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029451" } ] }, { "id": "R-SSC-2029454", "name": "Autophosphorylation of PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-399819" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029454", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029454" } ] }, { "id": "R-SSC-2029456", "name": "RAC1 and CDC42 activate PAK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029456", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029456" } ] }, { "id": "R-SSC-2029465", "name": "RAC1:GTP and PIP3 bind WAVE Regulatory Complex (WRC)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029465", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029465" } ] }, { "id": "R-SSC-2029466", "name": "(WASPs, WAVE):G-actin:ARP2/3 binds F-actin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029466", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029466" } ] }, { "id": "R-SSC-2029467", "name": "Activation of RAC1 by CRKII:DOCK180:ELMO", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029467", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029467" } ] }, { "id": "R-SSC-2029469", "name": "p-ERK phosphorylates WAVEs and ABI", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029469", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029469" } ] }, { "id": "R-SSC-205039", "name": "p75NTR indirectly activates RAC and Cdc42 via a guanyl-nucleotide exchange factor", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-205039", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-205039" } ] }, { "id": "R-SSC-205136", "name": "GTP-bound RAC contributes to JNK activation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-205136", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-205136" } ] }, { "id": "R-SSC-2130194", "name": "ABL phosphorylates WAVEs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2130194", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2130194" } ] }, { "id": "R-SSC-2197690", "name": "Detachment of WASP/WAVE", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2197690", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2197690" } ] }, { "id": "R-SSC-2316434", "name": "PI3K phosphorylates PIP2 to PIP3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2316434", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2316434" } ] }, { "id": "R-SSC-2424476", "name": "Activation of RAC1 by VAV2/3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2424476", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2424476" } ] }, { "id": "R-SSC-2730840", "name": "Activation of RAC1 by VAV", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730840", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730840" } ] }, { "id": "R-SSC-2730856", "name": "Autophosphorylation of PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730856", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730856" } ] }, { "id": "R-SSC-2730889", "name": "Recruitment of PAK to the membrane by binding active RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730889", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730889" } ] }, { "id": "R-SSC-3858475", "name": "ppDVL recruits RAC", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3858475", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3858475" } ] }, { "id": "R-SSC-389348", "name": "Activation of Rac1 by pVav1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-389348", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389348" } ] }, { "id": "R-SSC-389788", "name": "Activation of PAKs by RAC1 and CDC42", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-389788", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389788" } ] }, { "id": "R-SSC-3928619", "name": "PAK1 binds RAC1:GTP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928619", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928619" } ] }, { "id": "R-SSC-3928620", "name": "PAK1 autophosphorylates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928620", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928620" } ] }, { "id": "R-SSC-3928625", "name": "PAKs autophosphorylate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928625", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928625" } ] }, { "id": "R-SSC-3928628", "name": "VAV exchanges GTP for GDP on RAC1, activating it", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928628", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928628" } ] }, { "id": "R-SSC-3928633", "name": "bPIX exchanges GTP for GDP on RAC, activating it", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-114549" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928633", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928633" } ] }, { "id": "R-SSC-3928641", "name": "PAK binds RAC and bPIX", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928641", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928641" } ] }, { "id": "R-SSC-3928642", "name": "TIAM1 exchanges GTP for GDP on RAC1, activating it", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3928642", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928642" } ] }, { "id": "R-SSC-399930", "name": "Activation of PAK by Rac1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399930", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399930" } ] }, { "id": "R-SSC-399939", "name": "Autophosphorylation of PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399939", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399939" } ] }, { "id": "R-SSC-399952", "name": "Phosphorylation of LIMK-1 by PAK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-399952", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399952" } ] }, { "id": "R-SSC-400682", "name": "Active Rac1 interacts with Plexin-B1:Sema4D", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-400682", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-400682" } ] }, { "id": "R-SSC-4093336", "name": "p-TIAM1 exchanges GTP for GDP on RAC1, activating it", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4093336", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4093336" } ] }, { "id": "R-SSC-442273", "name": "VAV1 is a GEF for Rho/Rac family GTPases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-442273", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442273" } ] }, { "id": "R-SSC-442291", "name": "VAV2 is a GEF for Rho/Rac family kinases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-442291", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442291" } ] }, { "id": "R-SSC-445064", "name": "Activation of Rac1 by VAV2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-445064", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445064" } ] }, { "id": "R-SSC-445072", "name": "Interaction of PAK1 with Rac1-GTP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-162629" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-445072", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445072" } ] }, { "id": "R-SSC-5218827", "name": "NADPH oxidase 2 (NOX2) complex binds RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5218827", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218827" } ] }, { "id": "R-SSC-5218839", "name": "DOCK180:ELMO exchanges GTP for GDP, activating RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5218839", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218839" } ] }, { "id": "R-SSC-5218841", "name": "NADPH oxidase 2 generates superoxide from oxygen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5218841", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218841" } ] }, { "id": "R-SSC-5218850", "name": "VAV exchanges GTP for GDP on RAC1, activating it", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5218850", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5218850" } ] }, { "id": "R-SSC-5357445", "name": "PAK1-3 dimer disassociates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357445", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357445" } ] }, { "id": "R-SSC-5357472", "name": "PAK1-3 autophosphorylates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357472", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357472" } ] }, { "id": "R-SSC-5357483", "name": "RAC1 binds PAK1-3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5357483", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357483" } ] }, { "id": "R-SSC-5623622", "name": "RHOA, RHOB, RHOC and RAC1 bind PKN1, PKN2 or PKN3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5623622", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5623622" } ] }, { "id": "R-SSC-5623632", "name": "RHOA,RHOB,RHOC,RAC1:GTP:PKN1,2,3 binds PDPK1:PIP3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5623632", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5623632" } ] }, { "id": "R-SSC-5623667", "name": "PDPK1 phosphorylates PKN1,2,3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5623667", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5623667" } ] }, { "id": "R-SSC-5625959", "name": "Activated RHOA, RHOG, RAC1 and CDC42 bind KTN1 (kinectin)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5625959", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625959" } ] }, { "id": "R-SSC-5626469", "name": "GTP-bound RAC1 and CDC42 bind IQGAPs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5626469", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626469" } ] }, { "id": "R-SSC-5626507", "name": "IQGAPs bind F-actin, which is inhibited by calmodulin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5626507", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626507" } ] }, { "id": "R-SSC-5627775", "name": "Autophosphorylation of PAK1,2,3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5627775", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5627775" } ] }, { "id": "R-SSC-5665802", "name": "SRGAP2 binds RAC1:GTP:FMNL1:profilin:G-actin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5665802", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5665802" } ] }, { "id": "R-SSC-5665809", "name": "SRGAP2 stimulates RAC1 GTP-ase activity and ends FMNL1-mediated elongation of actin filaments", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [ "R-SSC-195131" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5665809", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5665809" } ] }, { "id": "R-SSC-5668714", "name": "RAC1:GTP binds NOX1 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668714", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668714" } ] }, { "id": "R-SSC-5668718", "name": "NOX1 complex:RAC1:GTP generates superoxide from oxygen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668718", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668718" } ] }, { "id": "R-SSC-5668731", "name": "NOX3 complex:RAC1:GTP generates superoxide from oxygen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668731", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668731" } ] }, { "id": "R-SSC-5668735", "name": "RAC1:GTP binds NOX3 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668735", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668735" } ] }, { "id": "R-SSC-5671993", "name": "CIT-3 binds DLG4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5671993", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5671993" } ] }, { "id": "R-SSC-5672083", "name": "KTN1 binds Kinesin-1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5672083", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5672083" } ] }, { "id": "R-SSC-5672304", "name": "IQGAP1 binds CDH1:CTTNB1:CTTNA1 and MEN1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5672304", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5672304" } ] }, { "id": "R-SSC-5672329", "name": "IQGAP1 binds CLIP1 and microtubules", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5672329", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5672329" } ] }, { "id": "R-SSC-6798743", "name": "Exocytosis of secretory granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, secretory granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798743", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798743" } ] }, { "id": "R-SSC-6800426", "name": "Exocytosis of ficolin-rich granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, ficolin-1-rich granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6800426", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6800426" } ] }, { "id": "R-SSC-8848618", "name": "Activation of RAC1 by the PXN:CRK complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8848618", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8848618" } ] }, { "id": "R-SSC-8875591", "name": "DOCK7 activates RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8875591", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875591" } ] }, { "id": "R-SSC-8951586", "name": "p-VAV family:PIP3 binds RAC1:GDP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8951586", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951586" } ] }, { "id": "R-SSC-8981931", "name": "RAC1 and CDC42 activate PAK2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8981931", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8981931" } ] }, { "id": "R-SSC-9013143", "name": "RAC1 GEFs activate RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013143", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013143" } ] }, { "id": "R-SSC-9013144", "name": "RAC1 GAPs stimulate RAC1 GTPase activity", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013144", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013144" } ] }, { "id": "R-SSC-9013145", "name": "RAC1 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013145", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013145" } ] }, { "id": "R-SSC-9013147", "name": "RAC1 GDIs block activation of RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013147" } ] }, { "id": "R-SSC-9032798", "name": "DOCK3 activates RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9032798", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9032798" } ] }, { "id": "R-SSC-9691168", "name": "RAC1 translocates to the endoplasmic reticulum membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9691168", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9691168" } ] }, { "id": "R-SSC-9691174", "name": "RAC1 binds effectors at the ER membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9691174", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9691174" } ] }, { "id": "R-SSC-9751201", "name": "p-VAV1,2,3 exchange 6TGTP for GDP on RAC1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [ "R-ALL-9748947" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9751201", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9751201" } ] }, { "id": "R-SSC-9958872", "name": "RAC1, CDC42 activate NFB", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9958872", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958872" } ] }, { "id": "R-SSC-9958873", "name": "Cell-to-cell contact through homophilic cadherin interactions inhibits RAC1/CDC42 ubiquitination", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9958873", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9958873" } ] }, { "id": "R-SSC-9970163", "name": "SRC-phosphorylated RAC1,(CDC42) GEFs activate RAC1,(CDC42)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9970163", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970163" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-114549", "participant_name": "GDP [plasma membrane]", "crossref": [ { "id": "2410", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "HMDB0001201", "database": "HMDB Metabolite", "url": "" }, { "id": "8145509", "database": "PubChem Substance", "url": "" }, { "id": "17552", "database": "ChEBI", "url": "" }, { "id": "ZINC000008215481", "database": "ZINC", "url": "" }, { "id": "C00035", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-9748947", "participant_name": "6TGTP [cytosol]", "crossref": [ { "id": "180688", "database": "ChEBI", "url": "" }, { "id": "10143562", "database": "PubChem Compound", "url": "" } ] }, { "participant_id": "R-SSC-162629", "participant_name": "PAK1 [cytosol]", "crossref": [ { "id": "ENSSSCG00000014878", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000081433", "database": "ENSEMBL", "url": "" }, { "id": "86773", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000066687", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QRJ6", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-195131", "participant_name": "SRGAP2 [cytosol]", "crossref": [ { "id": "ENSSSCP00000050638", "database": "ENSEMBL", "url": "" }, { "id": "XP_020918956.1", "database": "RefSeq", "url": "" }, { "id": "A0A287B3E0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000015645", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000063954", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-399819", "participant_name": "phospho-p-S144,T423-PAK1 [cytosol]", "crossref": [ { "id": "ENSSSCP00000066687", "database": "ENSEMBL", "url": "" }, { "id": "86773", "database": "VGNC", "url": "" }, { "id": "A0A5G2QRJ6", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000081433", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000014878", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 189, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQK3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPG9-1", "uniprot_ac": "A0A5G2QPG9", "uniprot_id": "A0A5G2QPG9_PIG", "mass": { "chemical_mass": 111844.0, "monoisotopic_mass": 111844.0 }, "refseq": {}, "gene_names": [ { "name": "COL3A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QPG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ] } ], "protein_names": [ { "name": "Collagen type III alpha 1 chain", "type": "synonym", "evidence": [ { "id": "A0A5G2QPG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL3A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9", "locus": { "chromosome": "15", "start_pos": 93596363, "end_pos": 93526603, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016034", "url": "https://www.ensembl.org/id/ENSSSCG00000016034" } ] } } ], "crossref": [ { "id": "A0A5G2QPG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016034", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016034", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1566977", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566977", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-186797", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000171", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000171", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZQ85", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSFVQKGTWLLFALLHPTVILAQQQEAIEGGCSHLGQSYADRDVWKPEPCQICVCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGSPGSPGPPGICESCPTGGQNYSPQYESYDVKAGVAGGGIGGYPGPAGPPGPPGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGPSGSPGQRGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNGAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAVGPSGPRGGAGPPGPEGGKGPAGPPGPPGAAGTPGLQGMPGERGGSGGPGPKGDKGDPGGSGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGIAGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCISASPSTVPRKNWWTDSGAEKKYVWFGESMNGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMEHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCFL", "length": 1163, "header": "tr|A0A5G2QPG9-1|A0A5G2QPG9_PIG Isoform 1 of Collagen type III alpha 1 chain OS=Sus scrofa OX=9823 GN=COL3A1 PE=1 SV=1 CANONICAL=A0A5G2QPG9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ85/entry", "sequence": { "sequence": "DMTSFVQKGTWLLFALLHPTVILAQQQEAIEGGCSHLGQSYADRDVWKPEPCQICVCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGSPGSPGPPGICESCPTGGQNYSPQYESYDVKAGVAGGGIGGYPGPAGPPGPPGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGPSGSPGQRGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNGAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAVGPSGPRGGAGPPGPEGGKGPAGPPGPPGAAGTPGLQGMPGERGGSGGPGPKGDKGDPGGSGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGIAGQPGGTGPPGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGSNGNPGPPGSSGPPGKDGPPGPPGSSGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGAPGPGGISGITGARGLAGPPGMPGARGSPGPQGVKGENGKPGPSGLNGERGPPGPQGLPGLAGAAGEPGRDGNPGSDGLPGRDGAPGSKGDRGENGSPGAPGAPGHPGPPGPVGPAGKNGDRGETGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGANGIKGHRGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCISASPSTVPRKNWWTDSGAEKKYVWFGESMNGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMEHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCFL", "length": 1467, "header": "tr|A0A286ZQ85-1|A0A286ZQ85_PIG Computationally mapped isoform of Collagen type III alpha 1 chain OS=Sus scrofa OX=9823 GN=COL3A1 PE=1 SV=3 CANONICAL=A0A5G2QPG9-1" }, "locus": { "chromosome": "15", "start_pos": 93595424, "end_pos": 93557027, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056782.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056782.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033771.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033771.3" } ] } }, { "isoform_ac": "A0A5G2QPG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9/entry", "sequence": { "sequence": "MTSFVQKGTWLLFALLHPTVILAQQQEAIEGGCSHLGQSYADRDVWKPEPCQICVCDSGSVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGHGPQGPKGDPGPPGIPGRNGDPGLPGQPGSPGSPGPPGICESCPTGGQNYSPQYESYDVKAGVAGGGIGGYPGPAGPPGPPGPPGVSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGLKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGPSGSPGQRGEPGPQGHAGAAGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPGTNGAPGQRGAAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPGAAGERGMPGFRGAPGANGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGLPGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGQQGLQGLPGTSGPPGENGKPGEPGPKGEAGAPGIPGGKGDSGAPGERGPPGAVGPSGPRGGAGPPGPEGGKGPAGPPGPPGAAGTPGLQGMPGERGGSGGPGPKGDKGDPGGSGADGAPGKDGPRGPTGPIGPPGPAGQPGDKGESGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGIAGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGGAAAIAGVGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCISASPSTVPRKNWWTDSGAEKKYVWFGESMNGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMEHASGNVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLPIVDIAPYDIGGPDQEFGADIGPVCFL", "length": 1163, "header": "tr|A0A5G2QPG9-1|A0A5G2QPG9_PIG Isoform 1 of Collagen type III alpha 1 chain OS=Sus scrofa OX=9823 GN=COL3A1 PE=1 SV=1 CANONICAL=A0A5G2QPG9-1" }, "locus": { "chromosome": "15", "start_pos": 93595424, "end_pos": 93557030, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084652.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084652.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063978.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063978.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 624, "start_aa": "Thr", "end_pos": 624, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr624", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 722, "start_aa": "Thr", "end_pos": 722, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr722", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 765, "start_aa": "Thr", "end_pos": 765, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr765", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1566977", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566977", "resource": "Reactome", "description": "Fibronectin matrix formation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-186797", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "resource": "Reactome", "description": "Signaling by PDGF" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-3000171", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000171", "resource": "Reactome", "description": "Non-integrin membrane-ECM interactions" }, { "id": "R-SSC-3000178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "resource": "Reactome", "description": "ECM proteoglycans" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "platelet-derived growth factor binding", "id": "GO:0048407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048407", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent", "id": "GO:0005201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005201", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "collagen type III trimer", "id": "GO:0005586", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005586", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 12, "go_terms": [ { "name": "integrin-mediated signaling pathway", "id": "GO:0007229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007229", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "transforming growth factor beta receptor signaling pathway", "id": "GO:0007179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007179", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "collagen fibril organization", "id": "GO:0030199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030199", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "response to cytokine", "id": "GO:0034097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034097", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "skin development", "id": "GO:0043588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043588", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "skeletal system morphogenesis", "id": "GO:0048705", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048705", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "negative regulation of immune response", "id": "GO:0050777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050777", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "response to radiation", "id": "GO:0009314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009314", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "wound healing", "id": "GO:0042060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042060", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" }, { "name": "supramolecular fiber organization", "id": "GO:0097435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097435", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1064, "end_pos": 1066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1163, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" }, { "id": "PS51461", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51461" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrillar collagen NC1", "eco_id": "ECO_0000259", "start_pos": 929, "end_pos": 1163, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QPG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG9" }, { "id": "PS50184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFC", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 90, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 624, 722, 765 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1064, "end_pos": 1066 }, { "start_pos": 151, "end_pos": 153 }, { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQG4-1", "uniprot_ac": "A0A5G2QQG4", "uniprot_id": "A0A5G2QQG4_PIG", "mass": { "chemical_mass": 58744.0, "monoisotopic_mass": 58744.0 }, "refseq": { "ac": "XP_020952256", "name": "FERM domain-containing protein 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952256" }, "gene_names": [ { "name": "FRMD5", "type": "recommended", "evidence": [ { "id": "A0A5G2QQG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ] }, { "name": "FRMD5", "type": "synonym", "evidence": [ { "id": "XP_020952256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952256" } ] } ], "protein_names": [ { "name": "FERM domain-containing protein 5", "type": "recommended", "evidence": [ { "id": "A0A5G2QQG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4/entry#names_and_taxonomy" } ] }, { "name": "FERM domain-containing protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020952256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952256" } ] } ], "function": [ { "annotation": "May be involved in regulation of cell migration. May regulate cell-matrix interactions via its interaction with ITGB5 and modifying ITGB5 cytoplasmic tail interactions such as with FERMT2 and TLN1. May regulate ROCK1 kinase activity possibly involved in regulation of actin stress fiber formation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FEJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEJ5#function" }, { "database": "UniProtKB", "id": "ARBA00054411", "url": "https://www.uniprot.org/uniprotkb/ARBA00054411#function" }, { "database": "UniProtKB", "id": "A0A287BHI2", "url": "https://www.uniprot.org/uniprotkb/A0A287BHI2#function" }, { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRMD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4", "locus": { "chromosome": "1", "start_pos": 127650665, "end_pos": 127317701, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004694", "url": "https://www.ensembl.org/id/ENSSSCG00000004694" } ] } } ], "crossref": [ { "id": "A0A5G2QQG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004694", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004694", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13192", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13192", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17102", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17102", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152168", "url": "https://www.ncbi.nlm.nih.gov/gene/100152168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000798", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000798", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152168", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FEJ5", "url": "https://www.orthodb.org/?gene=A0A8W4FEJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952256", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952256", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BHI2", "url": "https://www.uniprot.org/uniprotkb/A0A287BHI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCT8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RML7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RML7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RML7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RML7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDPGKHPEGYSSKFQFFPKHSEKLERKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQSGHLKGPQLQQQQQQQGWGKSISLD", "length": 518, "header": "tr|A0A5G2QQG4-1|A0A5G2QQG4_PIG Isoform 1 of FERM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=1 SV=2 CANONICAL=A0A5G2QQG4-1" }, "isoforms": [ { "isoform_ac": "A0A287BHI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHI2/entry", "sequence": { "sequence": "DGDGFTCGRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDPGKHPEGYSSKFQFFPKHSEKLERKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQVNKFVLSVLRLLLVTMGLLFVLLLLLIILTESDLDIAFFRDIRQTPEFEQFHYQYFCPLRRWFACKVRSVVSLLIDT", "length": 544, "header": "tr|A0A287BHI2-1|A0A287BHI2_PIG Computationally mapped isoform of FERM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=1 SV=3 CANONICAL=A0A5G2QQG4-1" }, "locus": { "chromosome": "1", "start_pos": 127647530, "end_pos": 127600457, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058863.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058863.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056047.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056047.3" } ] } }, { "isoform_ac": "A0A4X1VCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCT8/entry", "sequence": { "sequence": "MEWTLIRVRNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQVNKFVLSVLRLLLVTMGLLFVLLLLLIILTESDLDIAFFRDIRQTPEFEQFHYQYFCPLRRWFACKVRSVVSLLIDT", "length": 336, "header": "tr|A0A4X1VCT8-1|A0A5G2QQG4_PIG Computationally mapped isoform of FERM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=1 SV=1 CANONICAL=A0A5G2QQG4-1" }, "locus": { "chromosome": "1", "start_pos": 127647530, "end_pos": 127622324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106898.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106898.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080170.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080170.1" } ] } }, { "isoform_ac": "A0A5G2QQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4/entry", "sequence": { "sequence": "MLSRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDPGKHPEGYSSKFQFFPKHSEKLERKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQSGHLKGPQLQQQQQQQGWGKSISLD", "length": 518, "header": "tr|A0A5G2QQG4-1|A0A5G2QQG4_PIG Isoform 1 of FERM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=1 SV=2 CANONICAL=A0A5G2QQG4-1" }, "locus": { "chromosome": "1", "start_pos": 127648242, "end_pos": 127317900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086802.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086802.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066972.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066972.2" } ] } }, { "isoform_ac": "A0A5G2RML7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RML7/entry", "sequence": { "sequence": "MGKSLIKIHTRVRVQLRVTNHCLRPLSVRILRMGPRLRGRLLTVATSGQGSQLEHLQGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQVNKFVLSVLRLLLVTMGLLFVLLLLLIILTESDLDIAFFRDIRQTPEFEQFHYQYFCPLRRWFACKVRSVVSLLIDT", "length": 249, "header": "tr|A0A5G2RML7-1|A0A5G2RML7_PIG Computationally mapped isoform of FERM domain containing 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=4 SV=2 CANONICAL=A0A5G2QQG4-1" }, "locus": { "chromosome": "1", "start_pos": 127647530, "end_pos": 127643809, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073161.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073161.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073859.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073859.2" } ] } }, { "isoform_ac": "A0A8W4FEJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEJ5/entry", "sequence": { "sequence": "MLSRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPPFTMCFRVKFYPADPAALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDPGKHPEGYSSKFQFFPKHSEKLERKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGNAAFLAFTPFGFVVLQGNKRVHFIKWNEVTKLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTVSSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSSVPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVTVIADEAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESEASTPTAAEMEALGGELRALCQGHGRPEEEQVNKFVLSVLRLLLVTMGLLFVLLLLLIILTESDLDIAFFRDIRQTPEFEQFHYQYFCPLRRWFACKVRSVVSLLIDT", "length": 570, "header": "tr|A0A8W4FEJ5-1|A0A8W4FEJ5_PIG Computationally mapped isoform of FERM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=FRMD5 PE=1 SV=1 CANONICAL=A0A5G2QQG4-1" }, "locus": { "chromosome": "1", "start_pos": 127647530, "end_pos": 127317900, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102946.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102946.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077736.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077736.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 276, "start_aa": "Thr", "end_pos": 276, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr276", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 433, "start_aa": "Thr", "end_pos": 433, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr433", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCT8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152168", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cytoskeletal protein binding", "id": "GO:0008092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008092", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of cell adhesion", "id": "GO:0045785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045785", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "actomyosin structure organization", "id": "GO:0031032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031032", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" }, { "name": "negative regulation of cell motility", "id": "GO:2000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000146", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQG4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 518, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQG4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQG4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG4" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 298, "start_aa": "Tyr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 276, 433 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QHB4-1", "uniprot_ac": "A0A5G2QHB4", "uniprot_id": "A0A5G2QHB4_PIG", "mass": { "chemical_mass": 38720.0, "monoisotopic_mass": 38720.0 }, "refseq": {}, "gene_names": [ { "name": "TMX4", "type": "recommended", "evidence": [ { "id": "A0A5G2QHB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ] } ], "protein_names": [ { "name": "Thioredoxin related transmembrane protein 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QHB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMX4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4", "locus": { "chromosome": "17", "start_pos": 16831932, "end_pos": 16881350, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021353", "url": "https://www.ensembl.org/id/ENSSSCG00000021353" } ] } } ], "crossref": [ { "id": "A0A5G2QHB4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021353", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021353", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627887", "url": "https://www.ncbi.nlm.nih.gov/gene/100627887", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627887", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627887", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGSNWSL", "url": "https://omabrowser.org/oma/group/CGSNWSL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LB23", "url": "https://www.orthodb.org/?gene=I3LB23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46107:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46107:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZIT3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB23", "url": "https://www.uniprot.org/uniprotkb/I3LB23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB23-1", "url": "https://www.uniprot.org/uniprotkb/I3LB23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGGRRGTLLAALLAAWVAAAAAEAEAGSEQAAVPEERSLVRPMTASNWTLVLEGEWMLKFYAPWCPSCQQTDSEWETFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGVPAWCSYVFFIIATLIFGLFMGLVLVVISECFSMPLPRHLSERSEQSLQSEEAHTAEQLQDVEEEKDDSNEEENKDSLVDDEEEKEDLGEEDEAEEDEEDSAVTGRDEERSDALDQRPPGEAPEDEAPGGETGDNTPEQPSLAGAEVAAEDTLRQRKSQHPDKGPS", "length": 350, "header": "tr|A0A5G2QHB4-1|A0A5G2QHB4_PIG Isoform 1 of Thioredoxin related transmembrane protein 4 OS=Sus scrofa OX=9823 GN=TMX4 PE=1 SV=1 CANONICAL=A0A5G2QHB4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIT3/entry", "sequence": { "sequence": "MVGGRRGTLLAALLAAWVAAAAAEAEAGSEQAAVPEERSLVLEGEWMLKFYAPWCPSCQQTDSEWETFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGVPAWCSYVFFIIATLIFGLFMGLVLVVISECFSMPLPRHLSERSEQSLQSEEAHTAEQLQDVEEEKDDSNEEENKDSLVDDEEEKEDLGEEDEAEEDEEDSAVTGRDEERSDALDQRPPGEAPEDEAPGGETGDNTPEQPSLAGAEVAAEDTLRQRKSQHPDKGDKGDEGDEGPSA", "length": 349, "header": "tr|A0A286ZIT3-1|A0A286ZIT3_PIG Computationally mapped isoform of Thioredoxin related transmembrane protein 4 OS=Sus scrofa OX=9823 GN=TMX4 PE=1 SV=1 CANONICAL=A0A5G2QHB4-1" }, "locus": { "chromosome": "17", "start_pos": 16881187, "end_pos": 16836070, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058858.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058858.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031485.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031485.2" } ] } }, { "isoform_ac": "A0A5G2QHB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4/entry", "sequence": { "sequence": "MVGGRRGTLLAALLAAWVAAAAAEAEAGSEQAAVPEERSLVRPMTASNWTLVLEGEWMLKFYAPWCPSCQQTDSEWETFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGVPAWCSYVFFIIATLIFGLFMGLVLVVISECFSMPLPRHLSERSEQSLQSEEAHTAEQLQDVEEEKDDSNEEENKDSLVDDEEEKEDLGEEDEAEEDEEDSAVTGRDEERSDALDQRPPGEAPEDEAPGGETGDNTPEQPSLAGAEVAAEDTLRQRKSQHPDKGPS", "length": 350, "header": "tr|A0A5G2QHB4-1|A0A5G2QHB4_PIG Isoform 1 of Thioredoxin related transmembrane protein 4 OS=Sus scrofa OX=9823 GN=TMX4 PE=1 SV=1 CANONICAL=A0A5G2QHB4-1" }, "locus": { "chromosome": "17", "start_pos": 16881187, "end_pos": 16836073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079783.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079783.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063225.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063225.1" } ] } }, { "isoform_ac": "A0A5G2QW70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW70/entry", "sequence": { "sequence": "MVGGRRGTLLAALLAAWVAAAAAEAEAGSEQAAVPEERSLVRPMTASNWTLVLEGEWMLKFYAPWCPSCQQTDSEWETFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGVPAWCSYVFFIIATLIFGLFMGLVLVVISECFSMPLPRHLSERSEQSLQSEEAHTAEQLQDVEEEKDDSNEEENKDSLVDDEEEKEDLGEEDEAEEDEEDSAVTGRDEERSDALDQRPPGEAPEDEAPGGETGDNTPEQPSQDTEKQT", "length": 332, "header": "tr|A0A5G2QW70-1|A0A5G2QW70_PIG Computationally mapped isoform of Thioredoxin related transmembrane protein 4 OS=Sus scrofa OX=9823 GN=TMX4 PE=1 SV=1 CANONICAL=A0A5G2QHB4-1" }, "locus": { "chromosome": "17", "start_pos": 16881187, "end_pos": 16835865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075788.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075788.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069199.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069199.1" } ] } }, { "isoform_ac": "I3LB23-1", "url": "https://www.uniprot.org/uniprotkb/I3LB23/entry", "sequence": { "sequence": "MVGGRRGTLLAALLAAWVAAAAAEAEAGSEQAAVPEERSLVRPMTASNWTLVLEGEWMLKFYAPWCPSCQQTDSEWETFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGVPAWCSYVFFIIATLIFGLFMGLVLVVISECFSMPLPRHLSERSEQSLQSEEAHTAEQLQDVEEEKDDSNEEENKDSLVDDEEEKEDLGEEDEAEEDEEDSAVTGRDEERSDALDQRPPGEAPEDEAPGGETGDNTPEQPSLAGAEVAAEDTLRQRKSQHPDKGDKGDEGDEGPSA", "length": 360, "header": "tr|I3LB23-1|I3LB23_PIG Computationally mapped isoform of Thioredoxin related transmembrane protein 4 OS=Sus scrofa OX=9823 GN=TMX4 PE=1 SV=2 CANONICAL=A0A5G2QHB4-1" }, "locus": { "chromosome": "17", "start_pos": 16881187, "end_pos": 16836070, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026729.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026729.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021242.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021242.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627887", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627887", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z5Y9-1", "protein_name": "Thioredoxin related transmembrane protein 4", "gene_name": "TMX4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVSGGVALLLGAVLGPFAASVFSSSPVGRPGEPRSRVQVLSGSNWSLVLQGQWMVEFYAPWCPACQQIELIWESFAKESEHLDITVGKVDVTQEPGLSGRFFVTTLPTIYHANDGVFRRYRGSRTLEDLQSYVLEKKWEAVEPVAGWKSPSSIVMHGMAGLFHLSGYIRQIHSYLTDTLGIHVWISYAVFILATLLIGLFLGLMLVLISDCLCPSKSNYRNETSEVITKENVENAENAVLEEPEEATELSADDAEEAAEVKDLSEGEDAPNSSVDDSEEDLALGKESGEEEEMEDLNEQPLADSETESSVRQRRSQVADGGL", "length": 323 }, "evidence": [ { "id": "A0A5G2QHB4", "url": "https://omabrowser.org/oma/group/A0A5G2QHB4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V912-1", "protein_name": "Thioredoxin-related transmembrane protein 4", "gene_name": "Tmx4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTGGFCVPVFLAAWLAAAAAEAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLILVVISECFYVPLPRASSERSEQEQRSEEAQGAEQLQDAEEEKDDSNEEENKDSLVDDEEEKEDLGDDDEVEEDEEEDNLAGIMDEEKSDSNEQGVVKEGSVSPKDEEARSADTQDVVEDSLRQRKSQHAKGP", "length": 336 }, "evidence": [ { "id": "A0A5G2QHB4", "url": "https://omabrowser.org/oma/group/A0A5G2QHB4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C0L0-1", "protein_name": "Thioredoxin-related transmembrane protein 4", "gene_name": "Tmx4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGGFCVPVLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLILVVISECFCVPLPRASSERCEQEQSTGEAQGAEQLQDAEEEKDDSNEEENKDSLVDDEEEKEDIGDEDEGEEDEEEDNLAGIMAEERSDTNERAVVKEGSVSPKEDGAHPADTQDVVEDALRQRKSQNANKGS", "length": 335 }, "evidence": [ { "id": "A0A5G2QHB4", "url": "https://omabrowser.org/oma/group/A0A5G2QHB4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H1E5-1", "protein_name": "Thioredoxin-related transmembrane protein 4", "gene_name": "TMX4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGGRCGPQLTALLAAWIAAVAATAGPEEAALPPEQSRVQPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEWEAFAKNGEILQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIFEDLQNYILEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLVLVVISECFYVPLPRHLSERSEQNRRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDEEEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTREEVEPEEAEEGISEQPCPADTEVVEDSLRQRKSQHADKGL", "length": 349 }, "evidence": [ { "id": "A0A5G2QHB4", "url": "https://omabrowser.org/oma/group/A0A5G2QHB4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "pmid": "" }, { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "disulfide oxidoreductase activity", "id": "GO:0015036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015036", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QHB4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QHB4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QHB4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QHB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHB4" }, { "id": "PF00085", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 137, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QII8-1", "uniprot_ac": "A0A5G2QII8", "uniprot_id": "A0A5G2QII8_PIG", "mass": { "chemical_mass": 103445.0, "monoisotopic_mass": 103445.0 }, "refseq": {}, "gene_names": [ { "name": "ITGA9", "type": "recommended", "evidence": [ { "id": "A0A5G2QII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ] } ], "protein_names": [ { "name": "Integrin subunit alpha 9", "type": "synonym", "evidence": [ { "id": "A0A5G2QII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Integrin alpha-9/beta-1 (ITGA9:ITGB1) is a receptor for VCAM1, cytotactin and osteopontin. It recognizes the sequence A-E-I-D-G-I-E-L in cytotactin. ITGA9:ITGB1 may play a crucial role in SVEP1/polydom-mediated myoblast cell adhesion. Integrin ITGA9:ITGB1 represses PRKCA-mediated L-type voltage-gated channel Ca(2+) influx and ROCK-mediated calcium sensitivity in vascular smooth muscle cells via its interaction with SVEP1, thereby inhibiting vasocontraction.", "evidence": [ { "database": "UniProtKB", "id": "F1RRC1", "url": "https://www.uniprot.org/uniprotkb/F1RRC1#function" }, { "database": "UniProtKB", "id": "ARBA00055088", "url": "https://www.uniprot.org/uniprotkb/ARBA00055088#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ITGA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8", "locus": { "chromosome": "13", "start_pos": 22655704, "end_pos": 22268503, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011245", "url": "https://www.ensembl.org/id/ENSSSCG00000011245" } ] } } ], "crossref": [ { "id": "A0A5G2QII8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QII8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011245", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011245", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626707", "url": "https://www.ncbi.nlm.nih.gov/gene/100626707", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626707", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626707", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MMRKGMA", "url": "https://omabrowser.org/oma/group/MMRKGMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RRC1", "url": "https://www.orthodb.org/?gene=F1RRC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23220", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23220", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23220:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23220:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01839", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01839", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20806", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20806", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R159", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R159", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R159-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R159-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRC1", "url": "https://www.uniprot.org/uniprotkb/F1RRC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRC1-1", "url": "https://www.uniprot.org/uniprotkb/F1RRC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARGKNRGMSCGKTCREDRDDEWMGVSLARQPKADGQVLACAHRWKNIYYETDHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTVKVLNLTDNTYFKLNDEVIMNRRYTYLGYAVTAGHFSHVSTTDVVGGAPQDDGIGKVYVFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNADGLSDLLVGAPMFSEIRDEGQVTVYINRGNGALEEQLALTGDGAYNAHFGESIASLGDLDDDGFPDVAIGAPKEDDFSGAVYIYHGDAGGMVPQYSMKLSGRKISPVLRMFGQSISGGVDMDGNGYPDVTIGAFMSDSVVLLRARPVITVDVTILLPASINITAPQCHDGQQPVNCLNVTVCFSFHGKHVPGEIGLNYVLTADVAKKEKSQLPRVYFVLLGESVGQVSEKLQLVHLEETCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVTGEEEKELPALTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGHLLLSSIDEKTPYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNVERSESLHDNTLMLTVPLMHEVDTSITGITSPTSFVYGESVEASNFIQLDDLECHFQPLNVTLQVYNTGPSTLPGSSVSISFPNRLSPGGAEIFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKPGISCLTLHCNLSALTKEESRTIDIYMLLNTEILKKDSSSVIQFMTRAKVKVDPAQRVVEMASGNPEEMTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ", "length": 934, "header": "tr|A0A5G2QII8-1|A0A5G2QII8_PIG Isoform 1 of Integrin subunit alpha 9 OS=Sus scrofa OX=9823 GN=ITGA9 PE=3 SV=1 CANONICAL=A0A5G2QII8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QII8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8/entry", "sequence": { "sequence": "MARGKNRGMSCGKTCREDRDDEWMGVSLARQPKADGQVLACAHRWKNIYYETDHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTVKVLNLTDNTYFKLNDEVIMNRRYTYLGYAVTAGHFSHVSTTDVVGGAPQDDGIGKVYVFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNADGLSDLLVGAPMFSEIRDEGQVTVYINRGNGALEEQLALTGDGAYNAHFGESIASLGDLDDDGFPDVAIGAPKEDDFSGAVYIYHGDAGGMVPQYSMKLSGRKISPVLRMFGQSISGGVDMDGNGYPDVTIGAFMSDSVVLLRARPVITVDVTILLPASINITAPQCHDGQQPVNCLNVTVCFSFHGKHVPGEIGLNYVLTADVAKKEKSQLPRVYFVLLGESVGQVSEKLQLVHLEETCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVTGEEEKELPALTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGHLLLSSIDEKTPYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNVERSESLHDNTLMLTVPLMHEVDTSITGITSPTSFVYGESVEASNFIQLDDLECHFQPLNVTLQVYNTGPSTLPGSSVSISFPNRLSPGGAEIFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKPGISCLTLHCNLSALTKEESRTIDIYMLLNTEILKKDSSSVIQFMTRAKVKVDPAQRVVEMASGNPEEMTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ", "length": 934, "header": "tr|A0A5G2QII8-1|A0A5G2QII8_PIG Isoform 1 of Integrin subunit alpha 9 OS=Sus scrofa OX=9823 GN=ITGA9 PE=3 SV=1 CANONICAL=A0A5G2QII8-1" }, "locus": { "chromosome": "13", "start_pos": 22651046, "end_pos": 22318777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072364.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072364.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064246.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064246.1" } ] } }, { "isoform_ac": "A0A5G2R159-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R159/entry", "sequence": { "sequence": "MGGPAARRGAGRLCALFLALVAAGTPAGAYNLDPQRPVRFQGPAGSFFGYAVLEHFHDNTRWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARGKNRGMSCGKTCREDRDDEWMGVSLARQPKADGQVLACAHRWKNIYYETDHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTVKVLNLTDNTYFKLNDEVIMNRRYTYLGYAVTAGHFSHVSTTDVVGGAPQDDGIGKVYVFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNADGLSDLLVGAPMFSEIRDEGQVTVYINRGNGALEEQLALTGDGAYNAHFGESIASLGDLDDDGFPDVAIGAPKEDDFSGAVYIYHGDAGGMVPQYSMKLSGRKISPVLRMFGQSISGGVDMDGNGYPDVTIGAFMSDSVVLLRARPVITVDVTILLPASINITAPQCHDGQQPVNCLNVTVCFSFHGKHVPGEIGLNYVLTADVAKKEKSQLPRVYFVLLGESVGQVSEKLQLVHLEETCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVTGEEEKELPALTPVLRWKKGQKIAQKNQVRTWKHTLGPEGRCL", "length": 628, "header": "tr|A0A5G2R159-1|A0A5G2R159_PIG Computationally mapped isoform of Integrin subunit alpha 9 OS=Sus scrofa OX=9823 GN=ITGA9 PE=3 SV=1 CANONICAL=A0A5G2QII8-1" }, "locus": { "chromosome": "13", "start_pos": 22480991, "end_pos": 22298959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083439.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083439.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070848.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070848.1" } ] } }, { "isoform_ac": "F1RRC1-1", "url": "https://www.uniprot.org/uniprotkb/F1RRC1/entry", "sequence": { "sequence": "MGGPAARRGAGRLCALFLALVAAGTPAGAYNLDPQRPVRFQGPAGSFFGYAVLEHFHDNTRWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARGKNRGMSCGKTCREDRDDEWMGVSLARQPKADGQVLACAHRWKNIYYETDHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTVKVLNLTDNTYFKLNDEVIMNRRYTYLGYAVTAGHFSHVSTTDVVGGAPQDDGIGKVYVFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNADGLSDLLVGAPMFSEIRDEGQVTVYINRGNGALEEQLALTGDGAYNAHFGESIASLGDLDDDGFPDVAIGAPKEDDFSGAVYIYHGDAGGMVPQYSMKLSGRKISPVLRMFGQSISGGVDMDGNGYPDVTIGAFMSDSVVLLRARPVITVDVTILLPASINITAPQCHDGQQPVNCLNVTVCFSFHGKHVPGEIGLNYVLTADVAKKEKSQLPRVYFVLLGESVGQVSEKLQLVHLEETCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVTGEEEKELPALTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGHLLLSSIDEKTPYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNVERSESLHDNTLMLTVPLMHEVDTSITGITSPTSFVYGESVEASNFIQLDDLECHFQPLNVTLQVYNTGPSTLPGSSVSISFPNRLSPGGAEIFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKPGISCLTLHCNLSALTKEESRTIDIYMLLNTEILKKDSSSVIQFMTRAKVKVDPAQRVVEMASGNPEEMTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ", "length": 1035, "header": "tr|F1RRC1-1|F1RRC1_PIG Computationally mapped isoform of Integrin alpha-9 OS=Sus scrofa OX=9823 GN=ITGA9 PE=3 SV=3 CANONICAL=A0A5G2QII8-1" }, "locus": { "chromosome": "13", "start_pos": 22651046, "end_pos": 22298959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012312.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012312.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011991.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011991.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 151, "start_aa": "Thr", "end_pos": 151, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr151", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626707", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626707", "resource": "KEGG Pathway" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-3000178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "resource": "Reactome", "description": "ECM proteoglycans" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z2J6-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPAGRRCWARVLSALLWVALACCYNVDVGRPVVFQGPNGSFFGYSVLQHYHDSTRWVLVGAPKADSRYSTSIQSPGAVFKCRVHTNPDRRCTELDMGRGNSRGMLCGKTCKEDRDDEWMGVSLARQPKAGGSVLACAHRWKNIYYETEYILPHGFCNIIPPNLQPSGKKLLPCYEEYKKKYGEEHGSCQAGIAGFFTEELVIMGAPGSYYWTGTVKVLNLTDNTYYKLNDDAVIARRYTYLGYAVTAGHFSQPTTTDVVGGAPQDGGIGKVYIFRTDRRSGSLVKIFQASGKKMGSYFGSSLCAVDLNSDGLSDLLVGAPMFSEIRDEGQVTVYINRGNGVLEEQLVLDGDGAYNAHFGESIAALGDIDDDGFPDVAIGAPKEDNYIGAVYIYHGDANGIVPQYSMKLSGQTINPMLRMFGQSISGGVDMDGNGYPDMTVGAFLSDHVVLLRSRPVITMDISIFLPASINITAPQCHDSLQPVNCLNVTACFRFSGKHVPGEIGLNYNLTADVAKKEKSQQPRVYFVTSGETVGQITEKLELSYMQEKCRHFLAYVKRRVKDVISPIVFEASYSLGEHVIERGKEDKELPSLKPVLRWKKGQKIAQRNQTVFERNCQSDDCAADLKLQGKLLLSSVDDRTAYLALGAVRNISLNISISNIGDDAYDTNVFFNFSGELFFIKMWQKEEQGISCELLESDFLKCSVEFPFMRSKSRYEFSVIFDTSHLSGQEETLTFLVTAQSGNMERMESLHDNTLTLSVPLMHEVDSIVLDVFQTYLHSQLWLYKYFLLMSSHVCLGLLNTSICIFFLQVYNAGPSTLPGAFLDISFPNRLSATGAEIFHVQQMMVGQDKGNCSFHRNRNPCVVPQENENIFHTIFAFFTKSGRKVLDCERPGRSCLIIRCNLSSLAKAESSEISIYTLLNTEILKKDISSVIQFVTRARVQVDPDLRVVEVPNGSPEEKTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKETEDSWDWVQKNQ", "length": 1033 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B8JK39-1", "protein_name": "Integrin alpha-9", "gene_name": "Itga9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGPAAARTGAGGLRALLLALVAAGVPAGAYNLDAQRPVRFQGPSGSFFGYAVLEHFHDNTRWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARGRTRGAPCGKTCRGDRDDEWMGVSLARQPRADGRVLACAHRWKNIYYEADHILPHGFCYLIPSNLQAKGKVLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTLKVLNLTDNTYFKLNDEAIMNRRYTYLGYAVTAGHFSHPSITDVVGGAPQDEGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNMDGLSDLLVGAPMFSEIRDEGQVTVYLNQGHGALEEQLTLTGDAAYNAHFGESIANLGDIDDDGFPDVAVGAPKEEDFAGAVYIYHGDANGIVPKYSMKLSGRRLNPTLRMFGQSISGGIDMDGNGYPDVTIGAFLSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTVCFRFHGKNVPGEIGLNYNLTADVAQKEKGQLPRVYFVLFGETAGQVSERLQLSHMDEVCHHYVAHVKRRVQDVISPIVFEAAYSLDEHVMGEEDRELPDLTPVLRWKKGQRISQKNQTVFERNCQSEDCAADLQLRGKLLLSSVDEKTPHLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEILSFIVTAQSGNLERSEALHDNTLTLTVPLVHEVDTSITGIVSPTSFVYGESVDASNFIQLDDQECHFQPVNITLQVYNMGPSTLPGSSVSISFPSRLSPGGAEMFQVQDMVVSQEKGNCSLQRNPTPCIIPQEQENIFHTIFAFFSKSGRKVLDCEKPGSFCLTLHCNLSALPKEESRTINLYMLLNTEILKKDSSSVIQFMARAKVKVEPALRVVEIANGNPEETLVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDGWDWVQKNQ", "length": 1036 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZN51-1", "protein_name": "Integrin alpha-9", "gene_name": "Itga9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFIQVQHQVQAVLREPRPAGGAAGPSRQGRPGRPPLGRASPQSSAARAPDPLHRRAQSSRRGSRGRGALAASPGLFPARAAALPSVPGSDLECTARAPGSVVSREPRSRGRAQGGGRLGMGGPAAKGTGAGGLRALLLALVAAGVPAGAYNIDAQRPVRFQGPPGSFFGYAVLEHFHDNTRWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARERNRGESCGKTCRGDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYETDHILPHGFCYLIPSNLQAKGRMLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVIMGAPGSFYWAGTLKVLNLTDNTYFKLNDDAIMNRRYTYLGYAVTAGHFSHPSVTDVVGGAPQDEGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNMDGLSDLLVGAPMFSEIRDEGQVTVYLNQGHGVLEEQLTLTGDAAYNAHFGESIASLGDLDDDGFPDVAVGAPMEDDFAGTVYIYHGDAQGIVPQYSMKLSGRKINPILQMFGQSISGGIDMDGNGYPDVTVGAFLSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTVCFRFHGKNVPGEIGLNYNLTADVAQKEKGQLPRVYFVLLGETAGQVSERLQLTHMDEVCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVIGEEDRELPDLTPVLRWKKGQRIAQKNQTVFERNCRSEDCAADLQLRGKLLLSSVDEKTTHLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEILSFIVTAQSGNMERSEALHDNTLTLTIPLVHEVDTSITGIVSPTSFVYGESVDASNFIQLDDQECHFQPVNITLQVYNMGPSTLPGSSVSISFPSRLSPGGAEMFQVQDMVVSQEKGNCSLQRNPTPCIIPQEQENIFHTIFAFFSKSGRKVLDCEKTGSFCLTLHCNLSALPKEESRAIDLYMLLNTEILKKDSSSVIQFMARAKVKVEPALRVVEIANGNPEETLVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEEAWDWVQKNQ", "length": 1156 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MMH2-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGGSAAQRGAGGLRALLLALVAAGTPAGAYNLDPQRPVRFQGPAGSFFGYAVLEHFHDNTRWVLVGAPKADSKYSTSVKSPGAVFKCRVHTNPDRRCTELDMARGKNRGMPCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYETDHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWSGTVKVLNLTDNTYFKLNDEVIMNRRYTYLGYAVTAGHFSHVSSTDVVGGAPQDEGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNTDGLSDLLVGAPMFSEIRDEGQVTVYINKGNGVLEEQLTLSGDGAYNAHFGESIASLGDLDDDGFPDVAIGAPKEDDFSGAVYIYHGDARGMVPQYSMKLSGRKISPVLRMFGQSISGGIDMDGNSYPDMTVGAFMSDSVVLLRARPVITVDVSIFLPASINITAPQCHDGQQPVNCLNVTACFSFHGKHVPGEIGLNYVLTADVAKKEKSQLPRVYLVLLGESVGQVSEKLRLVHLEETCHHYVAHVKRRVQDVISPIVFEAAYSLGEHVTGEEEKELPALTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGHLLLSSVDEKTPYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLELDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNVERSESLHNNVLTLTVPLMHEVDTSITGIMSPTSFVYGESVDASNFIQLDDLECHFQPLNVTLQIYNTGPSTLPGSSVSMSFPNRLSPGGAEMFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKTGISCLTMHCNLSALAKEESRTIDIYMLLNTEILKKDSSSVIQFMTHAKVKVDPSLRVVEVASGNPEEMTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ", "length": 1035 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1Q8T4-1", "protein_name": "Integrin alpha-9", "gene_name": "itga9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPNRMTELSTRKIRALDVFVCLCSVSLAYSFNIDLQYPVVFRGPDATFFGYSVLEHVHDNTRWIVVGAPRANSSFSSSVQSPGAVYKCRIRNNPEQRCTEMDLGRGNKQRESCGKTCQGDRNDEWMGVSLARQNKPNGKILACAHRWKNVYYESEYILPHGYCSIIPANLQGKSQPLIPCYEDHKKTYGEEHGSCQAGIAGVFTEELVVMGAPGSYYWTGTVKVFNMTSNTHYNLNQDDLSPHRYSYLGYAVTAGHFSSPNTIDVAAGAPQDSGGGKVYVFRIEGTALVKIFQASGKMMGSYFGSSLCAVDLNADGLSDLLVGAPMHSEIRDEGQVSVYLSSGNGVMEEVAILNGDNAYNAHFGECITSLGDIDDDGYQDVAIGAPEEDDYGGAVYIYHGDARGIVNKYSMRLSGRSINPTLQMFGQSISGNVDMDGNGYPDVTIGAFMADSVVLLRSRPVISVDVSIFLPVSINITVPQCHEGPQHLNCFNVTVCMSFRGKHVPGHIELLYNLTADSDKRHKGLPPRAYFGNGGEQTGVVSQRFNLEIHRQQCHQYTAFVRKEVKDVFAAIVFEAAYSLGKHIVDEHQDRDLPPLSPILRWKKGEKIAAKNETWFEKNCLSDDCAADLQLHGKLLLSGRYISSHLALGGVKNVSLNLTISNAGDDAYDTNIYFNFSKEVHYINFLQREEKGISCMLVELDFLKCSVGFPFMRAQTKYHISALFDTSRLSGENETLLFLVHARSANPEHDNTLHDNTLELSIPLVHEVDTTITGVVNPTSFVYGNSVDRSRFVQLEDMECSFQPLNFTFQVINNGPSRLPGSRVDIRIPHRLAGSGPEMFHIIDTQVSDARGNCTWHRNPKPCTIPQDKESIFHTIFAFFTKSGRKVLDCDRPGRACLTISCSLGSQAKEEATSIDVQMLLNTEILQRDSSSVIQFVTRGHVQLDDRTVEVSSGLPDDISLVMEALHSQEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRHYREIIEAEKNRKDSDESWDWVQKSQ", "length": 1032 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGPAAPRGAGRLRALLLALVVAGIPAGAYNLDPQRPVHFQGPADSFFGYAVLEHFHDNTRWVLVGAPKADSKYSPSVKSPGAVFKCRVHTNPDRRCTELDMARGKNRGTSCGKTCREDRDDEWMGVSLARQPKADGRVLACAHRWKNIYYEADHILPHGFCYIIPSNLQAKGRTLIPCYEEYKKKYGEEHGSCQAGIAGFFTEELVVMGAPGSFYWAGTIKVLNLTDNTYLKLNDEVIMNRRYTYLGYAVTAGHFSHPSTIDVVGGAPQDKGIGKVYIFRADRRSGTLIKIFQASGKKMGSYFGSSLCAVDLNGDGLSDLLVGAPMFSEIRDEGQVTVYINRGNGALEEQLALTGDGAYNAHFGESIASLDDLDNDGFPDVAIGAPKEDDFAGAVYIYHGDAGGIVPQYSMKLSGQKINPVLRMFGQSISGGIDMDGNGYPDVTVGAFMSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTTCFSFHGKHVPGEIGLNYVLMADVAKKEKGQMPRVYFVLLGETMGQVTEKLQLTYMEETCRHYVAHVKRRVQDVISPIVFEAAYSLSEHVTGEEERELPPLTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGKLLLSSMDEKTLYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNTERSESLHDNTLVLMVPLMHEVDTSITGIMSPTSFVYGESVDAANFIQLDDLECHFQPINITLQVYNTGPSTLPGSSVSISFPNRLSSGGAEMFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKPGISCLTAHCNFSALAKEESRTIDIYMLLNTEILKKDSSSVIQFMSRAKVKVDPALRVVEIAHGNPEEVTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ", "length": 1035 }, "evidence": [ { "id": "A0A5G2QII8", "url": "https://omabrowser.org/oma/group/A0A5G2QII8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "integrin-mediated signaling pathway", "id": "GO:0007229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007229", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "negative regulation of vasoconstriction", "id": "GO:0045906", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045906", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "integrin complex", "id": "GO:0008305", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008305", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "basal plasma membrane", "id": "GO:0009925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "integrin alpha9-beta1 complex", "id": "GO:0034679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034679", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "integrin binding involved in cell-matrix adhesion", "id": "GO:0098640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098640", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" }, { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QII8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 753, "end_pos": 755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QII8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 934, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QII8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QII8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" }, { "id": "PF08441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrin alpha first immunoglubulin-like", "eco_id": "ECO_0000259", "start_pos": 358, "end_pos": 517, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" }, { "id": "PF20805", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrin alpha second immunoglobulin-like", "eco_id": "ECO_0000259", "start_pos": 519, "end_pos": 662, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QII8" }, { "id": "PF20806", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20806" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrin alpha third immunoglobulin-like", "eco_id": "ECO_0000259", "start_pos": 671, "end_pos": 865, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 151 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 392, "end_pos": 394 }, { "start_pos": 511, "end_pos": 513 }, { "start_pos": 553, "end_pos": 555 }, { "start_pos": 557, "end_pos": 559 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 753, "end_pos": 755 }, { "start_pos": 803, "end_pos": 805 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QJU5-1", "uniprot_ac": "A0A5G2QJU5", "uniprot_id": "A0A5G2QJU5_PIG", "mass": { "chemical_mass": 17413.0, "monoisotopic_mass": 17413.0 }, "refseq": {}, "gene_names": [ { "name": "UPK3A", "type": "recommended", "evidence": [ { "id": "A0A5G2QJU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ] } ], "protein_names": [ { "name": "Uroplakin 3A", "type": "synonym", "evidence": [ { "id": "A0A5G2QJU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UPK3A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5", "locus": { "chromosome": "5", "start_pos": 4109938, "end_pos": 4119289, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031423", "url": "https://www.ensembl.org/id/ENSSSCG00000031423" } ] } } ], "crossref": [ { "id": "A0A5G2QJU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031423", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031423", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09970", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09970", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397558", "url": "https://www.ncbi.nlm.nih.gov/gene/397558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "8JJ5", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8JJ5&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR024825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024831", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024831", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397558", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKPFCVF", "url": "https://omabrowser.org/oma/group/EKPFCVF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AEW0", "url": "https://www.orthodb.org/?gene=A0A287AEW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15446:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15446:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00008jj5", "url": "https://www.rcsb.org/structure/pdb_00008jj5", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8JJ5", "url": "https://www.rcsb.org/structure/8JJ5", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "A0A287AEW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLLWALLALGCLQLGSGVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSAALHGTYEVYLYVLVDSVTPYSAIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIVLSLMDMGGADGEMTHDSQITQEAVPKGTSEPSYTSVNRGPPLDRAEVYASKLQD", "length": 164, "header": "tr|A0A5G2QJU5-1|A0A5G2QJU5_PIG Isoform 1 of Uroplakin 3A OS=Sus scrofa OX=9823 GN=UPK3A PE=4 SV=1 CANONICAL=A0A5G2QJU5-1" }, "isoforms": [ { "isoform_ac": "A0A287AEW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW0/entry", "sequence": { "sequence": "MPLLWALLALGCLQLGSGVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSAALHGTYEVYLYVLVDSASSRNASVQDSTKTPLSSTPQETEGGRTGPYKAAAFDLAPCSDLPSLDAVRDVSQASEILNAYLVRVGINGTCLSDPNFRGLCNPPLSAATEYRFKYVLVNISTGLVQDQTLWSDPVCTNQLTPYSAIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIVLSLMDMGGADGEMTHDSQITQEAVPKGTSEPSYTSVNRGPPLDRAEVYASKLQD", "length": 285, "header": "tr|A0A287AEW0-1|A0A287AEW0_PIG Computationally mapped isoform of Uroplakin 3A OS=Sus scrofa OX=9823 GN=UPK3A PE=1 SV=1 CANONICAL=A0A5G2QJU5-1" }, "locus": { "chromosome": "5", "start_pos": 4119090, "end_pos": 4110141, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053081.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053081.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042565.1" } ] } }, { "isoform_ac": "A0A5G2QJU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5/entry", "sequence": { "sequence": "MPLLWALLALGCLQLGSGVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSAALHGTYEVYLYVLVDSVTPYSAIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIVLSLMDMGGADGEMTHDSQITQEAVPKGTSEPSYTSVNRGPPLDRAEVYASKLQD", "length": 164, "header": "tr|A0A5G2QJU5-1|A0A5G2QJU5_PIG Isoform 1 of Uroplakin 3A OS=Sus scrofa OX=9823 GN=UPK3A PE=4 SV=1 CANONICAL=A0A5G2QJU5-1" }, "locus": { "chromosome": "5", "start_pos": 4119090, "end_pos": 4110141, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085730.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085730.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064763.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064763.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Cryo-EM elucidates the uroplakin complex structure within liquid-crystalline lipids in the porcine urothelial membrane.", "journal": "Commun. Biol.", "date": "2023", "authors": "Yanagisawa Haruaki, Kita Yoshihiro, Oda Toshiyuki, Kikkawa Masahide", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEW0", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW0" } ], "reference": [ { "type": "PubMed", "id": "37805589", "url": "https://glygen.org/publication/PubMed/37805589" } ] } ], "pathway": [ { "id": "ssc:397558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397558", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M7U1-1", "protein_name": "Uroplakin 3A", "gene_name": "Upk3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQISQGEASDWSTREGRGMPLLVAAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSEPLSGAYEVYLYAMVDSAISWNVSVQDSTGAPLSTTFRQTQGGRSGPYKAVAFDLTPCGDLPSLDAVGDVTQASEILNAYLVRVGNNGTCFWDPNFQGLCNPPLTAATEYRFKYVLVNTSTGLVQDQTLWSDPIRTNRPSPYLAIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIILSFVDMGSSDGETTHDSQITQEAVPKTLGASEPSYSSVNRAPPLDRAEVFSSKLQD", "length": 294 }, "evidence": [ { "id": "A0A5G2QJU5", "url": "https://omabrowser.org/oma/group/A0A5G2QJU5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O75631-1", "protein_name": "Uroplakin-3a", "gene_name": "UPK3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHEVYLYVLVDSAISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIGDVSKASQILNAYLVRVGANGTCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQTLWSDPIRTNQLTPYSTIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIALSLVDMGSSDGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEVYSSKLQD", "length": 287 }, "evidence": [ { "id": "A0A5G2QJU5", "url": "https://omabrowser.org/oma/group/A0A5G2QJU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P38574-1", "protein_name": "Uroplakin-3a", "gene_name": "UPK3A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPLWVVLALGCLRLGSGVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSAALHGTYEVYLYVLVDSASFRNASVQDSTKTPLSSTFQQTQGGRTGPYKAAAFDLTPCSDSPSLDAVRDVSRASEILNAYLIRVGTNGTCLLDPNFQGLCNPPLSAATEYRFKYVLVNMSSGLVQDQTLWSDPIRTDRLTLYSAIDTWPGRRSGGMIVITSILGSLPFFLLIGFAGAIVLSLVDRGDADGATSHDSQITQEAVPKSLGTSEPSYTSVNRGPSLDRAEVYASKLQD", "length": 287 }, "evidence": [ { "id": "A0A5G2QJU5", "url": "https://omabrowser.org/oma/group/A0A5G2QJU5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9JKX8-1", "protein_name": "Uroplakin-3a", "gene_name": "Upk3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLWALLALGCLRCGWTVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSSEPLSGSYEVYLYAMVDSAMSRNVSVQDSAGVPLSTTFRQTQGGRSGPYKAAAFDLTPCGDLPSLDAVGDVTQASEILNAYLVRVGNNGTCFWDPNFQGLCNPPLTAATEYRFKYVLVNMSTGLVQDQTLWSDPIWTNRPIPYSAIDTWPGRRSGGMIVITSILGSLPFFLLVGFAGAIILSFVDMGSSDGEMTHDSQITQEAVPKTLGTSEPSYSSVNRGPPLDRAEVFSSKLQD", "length": 287 }, "evidence": [ { "id": "A0A5G2QJU5", "url": "https://omabrowser.org/oma/group/A0A5G2QJU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "apical plasma membrane urothelial plaque", "id": "GO:0120001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120001", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "pmid": "" }, { "name": "water transport", "id": "GO:0006833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006833", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "pmid": "" }, { "name": "urea transport", "id": "GO:0015840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015840", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QJU5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 164, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QJU5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QJU5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNV0-1", "uniprot_ac": "A0A5G2QNV0", "uniprot_id": "A0A5G2QNV0_PIG", "mass": { "chemical_mass": 26099.0, "monoisotopic_mass": 26099.0 }, "refseq": {}, "gene_names": [ { "name": "TOR2A", "type": "recommended", "evidence": [ { "id": "A0A5G2QNV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ] } ], "protein_names": [ { "name": "Torsin family 2 member A", "type": "recommended", "evidence": [ { "id": "A0A5G2QNV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TOR2A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0", "locus": { "chromosome": "1", "start_pos": 268233110, "end_pos": 268237458, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005619", "url": "https://www.ensembl.org/id/ENSSSCG00000005619" } ] } } ], "crossref": [ { "id": "A0A5G2QNV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005619", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005619", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10760", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10760", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10760:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10760:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21376", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21376", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS09", "url": "https://www.uniprot.org/uniprotkb/F1RS09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS09-1", "url": "https://www.uniprot.org/uniprotkb/F1RS09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAATCGCSLWSSLLGLLGLVSAAAASWDLTSLRCNFGTFCECDFRPDFQGLECDLAQHLAGQHLARALVVKALKAFVQDPAPTKPLVLSLHGWTGGKSYVSSLLAHYLFRGGLRSPHVHHFSPVIHFPHPSHMERYKKDLKSWIQGNLTACSRSLFLFDEMDKLTPGLIEVLRPFLGSSWVVYGTNYRKAIFIFIRWLLALGHHGRASPGRPGALPTAPATPRAALCAQRAGPSGPGATG", "length": 241, "header": "tr|A0A5G2QNV0-1|A0A5G2QNV0_PIG Isoform 1 of Torsin family 2 member A OS=Sus scrofa OX=9823 GN=TOR2A PE=3 SV=1 CANONICAL=A0A5G2QNV0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0/entry", "sequence": { "sequence": "MAAATCGCSLWSSLLGLLGLVSAAAASWDLTSLRCNFGTFCECDFRPDFQGLECDLAQHLAGQHLARALVVKALKAFVQDPAPTKPLVLSLHGWTGGKSYVSSLLAHYLFRGGLRSPHVHHFSPVIHFPHPSHMERYKKDLKSWIQGNLTACSRSLFLFDEMDKLTPGLIEVLRPFLGSSWVVYGTNYRKAIFIFIRWLLALGHHGRASPGRPGALPTAPATPRAALCAQRAGPSGPGATG", "length": 241, "header": "tr|A0A5G2QNV0-1|A0A5G2QNV0_PIG Isoform 1 of Torsin family 2 member A OS=Sus scrofa OX=9823 GN=TOR2A PE=3 SV=1 CANONICAL=A0A5G2QNV0-1" }, "locus": { "chromosome": "1", "start_pos": 268237404, "end_pos": 268233773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066825.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066825.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066370.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066370.1" } ] } }, { "isoform_ac": "F1RS09-1", "url": "https://www.uniprot.org/uniprotkb/F1RS09/entry", "sequence": { "sequence": "MAAATCGCSLWSSLLGLLGLVSAAAASWDLTSLRCNFGTFCECDFRPDFQGLECDLAQHLAGQHLARALVVKALKAFVQDPAPTKPLVLSLHGWTGGKSYVSSLLAHYLFRGGLRSPHVHHFSPVIHFPHPSHMERYKKDLKSWIQGNLTACSRSLFLFDEMDKLTPGLIEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVALEAWRSRRDREEIRLQELEPVVSQAVMDNPHHGFWRSGIMEEHLLDVLVPFLPLQRHHVRHCVLNELAHLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGCKTVASRIAFFL", "length": 320, "header": "tr|F1RS09-1|F1RS09_PIG Computationally mapped isoform of Torsin OS=Sus scrofa OX=9823 GN=TOR2A PE=3 SV=4 CANONICAL=A0A5G2QNV0-1" }, "locus": { "chromosome": "1", "start_pos": 268237404, "end_pos": 268233664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006179.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006179.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006020.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006020.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNV0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 241, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNV0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNV0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QI44-1", "uniprot_ac": "A0A5G2QI44", "uniprot_id": "A0A5G2QI44_PIG", "mass": { "chemical_mass": 12735.0, "monoisotopic_mass": 12735.0 }, "refseq": {}, "gene_names": [ { "name": "YWHAE", "type": "recommended", "evidence": [ { "id": "A0A5G2QI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ] } ], "protein_names": [ { "name": "Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon", "type": "synonym", "evidence": [ { "id": "A0A5G2QI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "YWHAE", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44", "locus": { "chromosome": "12", "start_pos": 47600745, "end_pos": 47645301, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062888", "url": "https://www.ensembl.org/id/ENSSSCG00000062888" } ] } } ], "crossref": [ { "id": "A0A5G2QI44", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI44", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038989", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038989", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10020", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10020", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620600", "url": "https://www.ncbi.nlm.nih.gov/gene/100620600", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000308", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000308", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620600", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620600", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A2R9", "url": "https://www.orthodb.org/?gene=A0A287A2R9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00244", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00244", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-111447", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2028269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2028269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-205025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-205025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371453", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625740", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75035", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75035", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A2R9", "url": "https://www.uniprot.org/uniprotkb/A0A287A2R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2R9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVKSRIKKRCRMWKMKISET", "length": 107, "header": "tr|A0A5G2QI44-1|A0A5G2QI44_PIG Isoform 1 of Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon OS=Sus scrofa OX=9823 GN=YWHAE PE=1 SV=1 CANONICAL=A0A5G2QI44-1" }, "isoforms": [ { "isoform_ac": "A0A287A2R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2R9/entry", "sequence": { "sequence": "MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEEQNKEALQDVEDENQ", "length": 255, "header": "tr|A0A287A2R9-1|A0A287A2R9_PIG Computationally mapped isoform of 14-3-3 protein epsilon OS=Sus scrofa OX=9823 GN=YWHAE PE=1 SV=1 CANONICAL=A0A5G2QI44-1" }, "locus": { "chromosome": "12", "start_pos": 47645176, "end_pos": 47602077, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040818.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040818.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038227.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038227.1" } ] } }, { "isoform_ac": "A0A5G2Q6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S6/entry", "sequence": { "sequence": "MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVRLFHCLPV", "length": 97, "header": "tr|A0A5G2Q6S6-1|A0A5G2QI44_PIG Computationally mapped isoform of Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon OS=Sus scrofa OX=9823 GN=YWHAE PE=1 SV=1 CANONICAL=A0A5G2QI44-1" }, "locus": { "chromosome": "12", "start_pos": 47645176, "end_pos": 47615147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088794.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088794.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059718.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059718.1" } ] } }, { "isoform_ac": "A0A5G2QI44-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44/entry", "sequence": { "sequence": "MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVKSRIKKRCRMWKMKISET", "length": 107, "header": "tr|A0A5G2QI44-1|A0A5G2QI44_PIG Isoform 1 of Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon OS=Sus scrofa OX=9823 GN=YWHAE PE=1 SV=1 CANONICAL=A0A5G2QI44-1" }, "locus": { "chromosome": "12", "start_pos": 47645176, "end_pos": 47602070, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074674.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074674.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064075.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064075.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6S6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620600", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620600", "resource": "KEGG Pathway" }, { "id": "R-SSC-111447", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "resource": "Reactome", "description": "Activation of BAD and translocation to mitochondria" }, { "id": "R-SSC-2028269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2028269", "resource": "Reactome", "description": "Signaling by Hippo" }, { "id": "R-SSC-205025", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-205025", "resource": "Reactome", "description": "NADE modulates death signalling" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" }, { "id": "R-SSC-3371511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371511", "resource": "Reactome", "description": "HSF1 activation" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-5625740", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "resource": "Reactome", "description": "RHO GTPases activate PKNs" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-75035", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75035", "resource": "Reactome", "description": "Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "pmid": "" }, { "name": "regulation of mitotic cell cycle", "id": "GO:0007346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007346", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphoserine residue binding", "id": "GO:0050815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050815", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QI44-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QI44-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QI44" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QI44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI44" }, { "id": "SM00101", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00101" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "14-3-3", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 106, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPU1-1", "uniprot_ac": "A0A5G2QPU1", "uniprot_id": "A0A5G2QPU1_PIG", "mass": { "chemical_mass": 18581.0, "monoisotopic_mass": 18581.0 }, "refseq": {}, "gene_names": [ { "name": "TXN2", "type": "recommended", "evidence": [ { "id": "A0A5G2QPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" } ] } ], "protein_names": [ { "name": "Thioredoxin, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A5G2QPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1/entry#names_and_taxonomy" } ] }, { "name": "Thioredoxin-2", "type": "synonym", "evidence": [ { "id": "A0A5G2QPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1", "locus": { "chromosome": "5", "start_pos": 11283395, "end_pos": 11264645, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000144", "url": "https://www.ensembl.org/id/ENSSSCG00000000144" } ] } } ], "crossref": [ { "id": "A0A5G2QPU1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000144", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000144", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02947", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02947", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "F1SKJ2", "url": "https://www.ebi.ac.uk/intact/interactors/id:F1SKJ2*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR005746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43601", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43601", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43601:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43601:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1614558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3299685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A349", "url": "https://www.uniprot.org/uniprotkb/A0A287A349", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A349-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A349-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFX8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKJ2", "url": "https://www.uniprot.org/uniprotkb/F1SKJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG", "length": 168, "header": "tr|A0A5G2QPU1-1|A0A5G2QPU1_PIG Isoform 1 of Thioredoxin, mitochondrial OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=1 CANONICAL=A0A5G2QPU1-1" }, "isoforms": [ { "isoform_ac": "A0A287A349-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A349/entry", "sequence": { "sequence": "MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKPPNTGPSSAPSLASCQAGRPRSQDSRLPTRSAPSRMLGQSRGASLWYHLGPISLIPSDLNPGAWLICLLRFSFLLLFCKKERRKLETRTSESNIQFSHFVQVLNKELL", "length": 255, "header": "tr|A0A287A349-1|A0A287A349_PIG Computationally mapped isoform of Thioredoxin, mitochondrial OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=1 CANONICAL=A0A5G2QPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11277367, "end_pos": 11265443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051686.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051686.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038185.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038185.2" } ] } }, { "isoform_ac": "A0A5G2QK41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK41/entry", "sequence": { "sequence": "MAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKDSRLPTRSAPSRMLGQSRGASLWYHLGPISLIPSDLNPGAWLICLLRFSFLLLFCKKERRKLETRTSESNIQFSHFVQVLNKELL", "length": 200, "header": "tr|A0A5G2QK41-1|A0A5G2QK41_PIG Computationally mapped isoform of Thioredoxin 2 OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=1 CANONICAL=A0A5G2QPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11277367, "end_pos": 11265443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073289.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073289.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064873.1" } ] } }, { "isoform_ac": "A0A5G2QPU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1/entry", "sequence": { "sequence": "MPMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG", "length": 168, "header": "tr|A0A5G2QPU1-1|A0A5G2QPU1_PIG Isoform 1 of Thioredoxin, mitochondrial OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=1 CANONICAL=A0A5G2QPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11276903, "end_pos": 11265125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092374.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092374.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075189.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075189.1" } ] } }, { "isoform_ac": "A0A8W4FFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX8/entry", "sequence": { "sequence": "QMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG", "length": 167, "header": "tr|A0A8W4FFX8-1|A0A8W4FFX8_PIG Computationally mapped isoform of Thioredoxin, mitochondrial OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=1 CANONICAL=A0A5G2QPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11276903, "end_pos": 11265440, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104985.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104985.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078222.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078222.1" } ] } }, { "isoform_ac": "F1SKJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKJ2/entry", "sequence": { "sequence": "MVRSGIAAEAPLQARSHAGRWPSGQKPWMAQRLLLRRFLASVVSRKPSHSRWAPLASRALQTPQLSLSNLTGTPSQARSLYTTQVCTTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLIG", "length": 194, "header": "tr|F1SKJ2-1|F1SKJ2_PIG Computationally mapped isoform of Thioredoxin, mitochondrial OS=Sus scrofa OX=9823 GN=TXN2 PE=1 SV=3 CANONICAL=A0A5G2QPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11276903, "end_pos": 11264676, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000150.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000150.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000148.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000148.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1614558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614558", "resource": "Reactome", "description": "Degradation of cysteine and homocysteine" }, { "id": "R-SSC-3299685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "resource": "Reactome", "description": "Detoxification of Reactive Oxygen Species" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell redox homeostasis", "id": "GO:0045454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045454", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-disulfide reductase activity", "id": "GO:0015035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015035", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPU1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 168, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPU1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPU1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPU1" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 168, "start_aa": "Ala", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QNX8-1", "uniprot_ac": "A0A5G2QNX8", "uniprot_id": "A0A5G2QNX8_PIG", "mass": { "chemical_mass": 41608.0, "monoisotopic_mass": 41608.0 }, "refseq": {}, "gene_names": [ { "name": "MRPS22", "type": "recommended", "evidence": [ { "id": "A0A5G2QNX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8" } ] } ], "protein_names": [ { "name": "Mitochondrial ribosomal protein S22", "type": "synonym", "evidence": [ { "id": "A0A5G2QNX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPS22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8", "locus": { "chromosome": "13", "start_pos": 80232773, "end_pos": 79981796, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035771", "url": "https://www.ensembl.org/id/ENSSSCG00000035771" } ] } } ], "crossref": [ { "id": "A0A5G2QNX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035771", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035771", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158122", "url": "https://www.ncbi.nlm.nih.gov/gene/100158122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR019374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158122", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYIELTL", "url": "https://omabrowser.org/oma/group/GYIELTL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AQT5", "url": "https://www.orthodb.org/?gene=A0A287AQT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13071", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13071", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13071:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13071:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaz", "url": "https://www.rcsb.org/structure/pdb_00006gaz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oip", "url": "https://www.rcsb.org/structure/pdb_00008oip", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAZ", "url": "https://www.rcsb.org/structure/6GAZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIP", "url": "https://www.rcsb.org/structure/8OIP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF10245", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10245", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AD99", "url": "https://www.uniprot.org/uniprotkb/A0A287AD99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHELHKPSLGWGCKGEEDSATVWRTALPAQPSDAPGHLLEVLGTQRKIRADPAQRSPQPWRKESGNSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHILHPDGQSAQEAKKQGAEGLHLIKVFAKTEAQKGAYIELTLQAYQEAFITHSAAS", "length": 364, "header": "tr|A0A5G2QNX8-1|A0A5G2QNX8_PIG Isoform 1 of Mitochondrial ribosomal protein S22 OS=Sus scrofa OX=9823 GN=MRPS22 PE=1 SV=1 CANONICAL=A0A5G2QNX8-1" }, "isoforms": [ { "isoform_ac": "A0A287AD99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD99/entry", "sequence": { "sequence": "MPHEPRETRNLSLPLPALVARIIMATLKASALLRSLQTNSCGTGRVCFPVRARPRPRALLQPLPGASGTGTLCRGLGSESESGNSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHILHPDGQSAQEAKKQGAEGLHLIKVFAKTEAQKGAYIELTLQAYQEAFITHSAAS", "length": 354, "header": "tr|A0A287AD99-1|A0A287AD99_PIG Computationally mapped isoform of Mitochondrial ribosomal protein S22 OS=Sus scrofa OX=9823 GN=MRPS22 PE=1 SV=1 CANONICAL=A0A5G2QNX8-1" }, "locus": { "chromosome": "13", "start_pos": 80228220, "end_pos": 80208310, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041948.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041948.1" } ] } }, { "isoform_ac": "A0A287AQT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5/entry", "sequence": { "sequence": "MPHEPRETRNLSLPLPALVARIIMATLKASALLRSLQTNSCGTGRVCFPVRARPRPRALLQPLPGASGTGTLCRGLGSESESGNSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHILHPDGQSAQEAKKQGAEGLHLIKVFAKTEAQKGAYIELTLQAYQEAFITHSAAS", "length": 382, "header": "tr|A0A287AQT5-1|A0A287AQT5_PIG Computationally mapped isoform of Mitochondrial ribosomal protein S22 OS=Sus scrofa OX=9823 GN=MRPS22 PE=1 SV=1 CANONICAL=A0A5G2QNX8-1" }, "locus": { "chromosome": "13", "start_pos": 80228220, "end_pos": 80208310, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046463.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046463.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046413.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046413.1" } ] } }, { "isoform_ac": "A0A5G2QDD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDD9/entry", "sequence": { "sequence": "MIMNLQGARHFKTAESSFPAKEGTYGISLSAGTALSEVLGTQRKIRADPAQRSPQPWRKESGNSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHILHPDGQSAQEAKKQGAEGLHLIKVFAKTEAQKGAYIELTLQAYQEAFITHSAAS", "length": 361, "header": "tr|A0A5G2QDD9-1|A0A5G2QNX8_PIG Computationally mapped isoform of Mitochondrial ribosomal protein S22 OS=Sus scrofa OX=9823 GN=MRPS22 PE=1 SV=1 CANONICAL=A0A5G2QNX8-1" }, "locus": { "chromosome": "13", "start_pos": 80228220, "end_pos": 80082449, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089560.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089560.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062631.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062631.1" } ] } }, { "isoform_ac": "A0A5G2QNX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8/entry", "sequence": { "sequence": "MHELHKPSLGWGCKGEEDSATVWRTALPAQPSDAPGHLLEVLGTQRKIRADPAQRSPQPWRKESGNSEIRKPTFMDEEVQNILIKMTGLDLQKIFKPALQELKPPTYKLMTQAQLEEATKQAVEAAKVRLKMPPVLEERAPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIKIHHHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHILHPDGQSAQEAKKQGAEGLHLIKVFAKTEAQKGAYIELTLQAYQEAFITHSAAS", "length": 364, "header": "tr|A0A5G2QNX8-1|A0A5G2QNX8_PIG Isoform 1 of Mitochondrial ribosomal protein S22 OS=Sus scrofa OX=9823 GN=MRPS22 PE=1 SV=1 CANONICAL=A0A5G2QNX8-1" }, "locus": { "chromosome": "13", "start_pos": 80228220, "end_pos": 79981796, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080150.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080150.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059997.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT5" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100158122", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158122", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "G3GSW2-1", "protein_name": "28S ribosomal protein S22, mitochondrial", "gene_name": "Mrps22", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAALRTALLVWRFQLGSRRAQRVCPRAAAQRLPDALLATRPQPFEVGQPCRPLSSEADSHSSEVKKPTFMDEEVQSILTKMTGLDLKKTFKPAVQPLKPPTYKLMTQAQLEEATRLATEAAKVRLKMPPVLEERTPINDVLAEDKILEGTETHKYVFTDISYNIPHRERFIVVREPSGTLRKASWEERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHEDVLNLCVAQFEPDSTEYIKIHHQTYEDIDRHGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLIDDATSLVQLYHMLHPDGQSAQEAKEQDAKGVNLIKVFAKTEAQRGPYIELALQTYQEIVISHSAAS", "length": 359 }, "evidence": [ { "id": "A0A5G2QNX8", "url": "https://omabrowser.org/oma/group/A0A5G2QNX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3N3U9-1", "protein_name": "Mitochondrial ribosomal protein S22", "gene_name": "MRPS22", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMATLRVSLSLWNLHAGSRGAGRVYFRARARPRPGDLFQPLPGVCGAGTPCRGLCSEAESGSPKIKKPTFMDEEVQSILIKMTGLDLLKIFKPAVQETKPPTYKLMTQAQLEEATRQAIEAAKVRLKMPPVLEERTPINDVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVHHQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHILHPDGQSAQEAKEQAAEGLQLIKVFAKTEAQKGAYIELTLQAYQEAFISSSAAS", "length": 360 }, "evidence": [ { "id": "A0A5G2QNX8", "url": "https://omabrowser.org/oma/group/A0A5G2QNX8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P82650-1", "protein_name": "Small ribosomal subunit protein mS22", "gene_name": "MRPS22", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPLGTTVLLWSLLRSSPGVERVCFRARIQPWHGGLLQPLPCSFEMGLPRRRFSSEAAESGSPETKKPTFMDEEVQSILTKMTGLNLQKTFKPAIQELKPPTYKLMTQAQLEEATRQAVEAAKVRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAEGINLIKVFAKTEAQKGAYIELTLQTYQEALSRHSAAS", "length": 360 }, "evidence": [ { "id": "A0A5G2QNX8", "url": "https://omabrowser.org/oma/group/A0A5G2QNX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CXW2-1", "protein_name": "Small ribosomal subunit protein mS22", "gene_name": "Mrps22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVRTPLSLWRFQLGSRRARRVCTRATAQRHPDALLATRPQPFEVGQPRRLLSSEAESGSSEVKKPAFMDEEVQRILTKITGLDLQKTFRPAIQPLKPPTYKLMTQAQLEEATRLAVEAAKVRLKMPPVLEERKPINDVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASWEERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVHHQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHMLHPDGQSAQEAKEQAAEGVDLIKVFAKTEAQRGAYIELALQTYQEIVTSHSAAS", "length": 359 }, "evidence": [ { "id": "A0A5G2QNX8", "url": "https://omabrowser.org/oma/group/A0A5G2QNX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial small ribosomal subunit", "id": "GO:0005763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005763", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QNX8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QNX8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QNX8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPT0-1", "uniprot_ac": "A0A5G2QPT0", "uniprot_id": "A0A5G2QPT0_PIG", "mass": { "chemical_mass": 104523.0, "monoisotopic_mass": 104523.0 }, "refseq": {}, "gene_names": [ { "name": "AAK1", "type": "recommended", "evidence": [ { "id": "A0A5G2QPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ] } ], "protein_names": [ { "name": "AP2-associated protein kinase 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "A0A5G2QPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0/entry#names_and_taxonomy" } ] }, { "name": "Adaptor-associated kinase 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Regulates clathrin-mediated endocytosis by phosphorylating the AP2M1/mu2 subunit of the adaptor protein complex 2 (AP-2) which ensures high affinity binding of AP-2 to cargo membrane proteins during the initial stages of endocytosis. Preferentially, may phosphorylate substrates on threonine residues. Regulates phosphorylation of other AP-2 subunits as well as AP-2 localization and AP-2-mediated internalization of ligand complexes. Phosphorylates NUMB and regulates its cellular localization, promoting NUMB localization to endosomes. Binds to and stabilizes the activated form of NOTCH1, increases its localization in endosomes and regulates its transcriptional activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7D0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D0#function" }, { "database": "UniProtKB", "id": "ARBA00054570", "url": "https://www.uniprot.org/uniprotkb/ARBA00054570#function" }, { "database": "UniProtKB", "id": "A0A5G2QJD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJD9#function" }, { "database": "UniProtKB", "id": "A0A287A4E3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4E3#function" }, { "database": "UniProtKB", "id": "A0A287BJR7", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR7#function" }, { "database": "UniProtKB", "id": "A0A480TDI7", "url": "https://www.uniprot.org/uniprotkb/A0A480TDI7#function" }, { "database": "UniProtKB", "id": "A0A5G2QN33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN33#function" }, { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0#function" }, { "database": "UniProtKB", "id": "A0A5G2QTU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AAK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0", "locus": { "chromosome": "3", "start_pos": 72968194, "end_pos": 72794158, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008337", "url": "https://www.ensembl.org/id/ENSSSCG00000008337" } ] } } ], "crossref": [ { "id": "A0A5G2QPT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008337", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008337", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255208", "url": "https://www.ncbi.nlm.nih.gov/gene/110255208", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051744", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051744", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255208", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255208", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480TDI7", "url": "https://www.orthodb.org/?gene=A0A480TDI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47907", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47907", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47907:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47907:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47907:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47907:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A4E3", "url": "https://www.uniprot.org/uniprotkb/A0A287A4E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJR7", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TDI7", "url": "https://www.uniprot.org/uniprotkb/A0A480TDI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TDI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TDI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7D0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAFKVKSLKFYPFYPMCKGSPCPYLQLESFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAQIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTDSLTGEDALIDCSLLSNPTTDLLEEFAPIAISAPAHKAAEDSNLISGFDVPEGSDKVAEDEFDPIPVLITKNPQGGHSRNSSGSSESSLPNLARSLLLVDQLIDL", "length": 969, "header": "tr|A0A5G2QPT0-1|A0A5G2QPT0_PIG Isoform 1 of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=2 CANONICAL=A0A5G2QPT0-1" }, "isoforms": [ { "isoform_ac": "A0A287A4E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4E3/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1142, "header": "tr|A0A287A4E3-1|A0A287A4E3_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=2 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051995.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051995.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038763.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038763.2" } ] } }, { "isoform_ac": "A0A287BJR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJR7/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPGLKSPDTSLLLPDLLPMTDPFGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1195, "header": "tr|A0A287BJR7-1|A0A287BJR7_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=1 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048476.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048476.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056398.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056398.2" } ] } }, { "isoform_ac": "A0A480TDI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TDI7/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTDSLTGEDALIDCSLLSNPTTDLLEEFAPIAISAPAHKAAEDSNLISGFDVPEGSDKVAEDEFDPIPVLITKNPQGGHSRNSSGSSESSLPNLARSLLLVDQLIDL", "length": 970, "header": "tr|A0A480TDI7-1|A0A480TDI7_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=1 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72955060, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009130.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009130.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008900.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008900.5" } ] } }, { "isoform_ac": "A0A5G2QJD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJD9/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTDSLTGEDALIDCSLLSNPTTDLLEEFAPIAISAPAHKAAEDSNLISGFDVPEGSDKVAEDEFDPIPVLITKNPQGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1316, "header": "tr|A0A5G2QJD9-1|A0A5G2QJD9_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=1 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072633.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072633.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064052.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064052.1" } ] } }, { "isoform_ac": "A0A5G2QN33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN33/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1176, "header": "tr|A0A5G2QN33-1|A0A5G2QN33_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=2 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067476.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067476.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063518.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063518.2" } ] } }, { "isoform_ac": "A0A5G2QPT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAFKVKSLKFYPFYPMCKGSPCPYLQLESFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAQIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTDSLTGEDALIDCSLLSNPTTDLLEEFAPIAISAPAHKAAEDSNLISGFDVPEGSDKVAEDEFDPIPVLITKNPQGGHSRNSSGSSESSLPNLARSLLLVDQLIDL", "length": 969, "header": "tr|A0A5G2QPT0-1|A0A5G2QPT0_PIG Isoform 1 of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=2 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72955060, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073670.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073670.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066720.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066720.2" } ] } }, { "isoform_ac": "A0A5G2QTU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU9/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTEKLIEGLKSPDTSLLLPDLLPMTDPFGSTSDAVIEKADVAVESLIPGLEPPVPQRLPSQTESVASNRTGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1210, "header": "tr|A0A5G2QTU9-1|A0A5G2QTU9_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=1 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083206.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083206.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065420.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065420.1" } ] } }, { "isoform_ac": "A0A5G2R7D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7D0/entry", "sequence": { "sequence": "MKKFFDSRREQGGSGLGSGSSGGGGSTSGLGSGYIGRVFGIGRQQVTVDEVLAEGGFAIVFLVRTSNGMKCALKRMFVNNEHDLQVCKREIQIMRDLSGHKNIVGYIDSSINNVSSGDVWEVLILMDFCRGGQVVNLMNQRLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLHDRGHYVLCDFGSATNKFQNPQTEGVNAVEDEIKKYTTLSYRAPEMVNLYSGKIITTKADIWALGCLLYKLCYFTLPFGESQVAICDGNFTIPDNSRYSQDMHCLIRYMLEPDPDKRPDIYQVSFFSFKLLKKECPVPNVQNSPIPAKLPEPVKASEAAAKKTQPKARLTDPIPTTETSIAPRQRPKAGQTQPNPGILPIQPALTPRKRAMVQPPPQVAGSSNQPGLLASVPQPKTQAPPSQPLPQSQAKQPQAPPAPQQPPSAPAQGLPAQAQATPQHQQQLFLKQQPQPPQPQPQAQAPPAAQQPSGTFYQQQQQQQQQQAQAQQFQAVHPAAQQPAIAQFPAVSQGSSQQQLIQNFYQQQQQQQQQQQLATTLHQQQLLTQQAALQQKTTVAAIQPPQAQPATASQPPPAQEPAIQAPVRQQPKVQTTPPPAIQGQKLGSLTPPSSPKAQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRASQQNVYNPSEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKHPEKLGGSAESLIPGFQPTQGDAFAASSFAAGTAEKRKGGQAVDSSLPLLSVSDPFIPLQVPDAPGLQREPNPCPVITIEHFKETAGVKGLPLYPDPSRGPGPKTQNSLESDYLARDGPSSNSSFHSSEEEGTDLEGDMLDCSGSRPLLMESEEEDESCKPLQGKLGGAVPFAQPEGSTEPAKAAQGGRKNQFRALTQPTADGLGEPDVFATAPFRSSRVPTDDTDIFAKAPFVSKGSVALSQPEEADVFLRAPFTKKKSLEELAGAQIATSQESPAQAGLLGPTDDVPLLPGLDRAVYPSVRAQYSVAGFAQQSNLPSHSVQAADRLDSISPRGPALESGAHPNDRNKGPQPQKEVVSGPVAGKPFRPQSLSKYSRHYSPEDEPTPEAQPIAAYKIVSQTNKQSIAGSVSITSLSSRTTELPAADPFALAPFPSKSGKQKP", "length": 1174, "header": "tr|A0A5G2R7D0-1|A0A5G2R7D0_PIG Computationally mapped isoform of AP2-associated protein kinase 1 OS=Sus scrofa OX=9823 GN=AAK1 PE=4 SV=1 CANONICAL=A0A5G2QPT0-1" }, "locus": { "chromosome": "3", "start_pos": 72965694, "end_pos": 72794885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074048.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074048.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070037.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070037.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255208", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255208", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "Notch binding", "id": "GO:0005112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005112", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "AP-2 adaptor complex binding", "id": "GO:0035612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035612", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "clathrin-coated pit", "id": "GO:0005905", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005905", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "regulation of protein localization", "id": "GO:0032880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032880", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "positive regulation of Notch signaling pathway", "id": "GO:0045747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045747", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "regulation of clathrin-dependent endocytosis", "id": "GO:2000369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000369", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" }, { "name": "presynaptic endocytosis", "id": "GO:0140238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140238", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" }, { "start_pos": 944, "end_pos": 946, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 969, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT0" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 315, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 710, "end_pos": 712 }, { "start_pos": 862, "end_pos": 864 }, { "start_pos": 944, "end_pos": 946 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QPP0-1", "uniprot_ac": "A0A5G2QPP0", "uniprot_id": "A0A5G2QPP0_PIG", "mass": { "chemical_mass": 29571.0, "monoisotopic_mass": 29571.0 }, "refseq": {}, "gene_names": [ { "name": "C11orf54", "type": "recommended", "evidence": [ { "id": "A0A5G2QPP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ] }, { "name": "C9H11orf54", "type": "recommended", "evidence": [ { "id": "A0A5G2QPP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ] }, { "name": "C11orf54", "type": "synonym", "evidence": [ { "id": "A0A5G2QPP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ] } ], "protein_names": [ { "name": "Chromosome 9 C11orf54 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QPP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C9H11orf54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QPP0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPP0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17298", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17298", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512671", "url": "https://www.ncbi.nlm.nih.gov/gene/100512671", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YHIMPDF", "url": "https://omabrowser.org/oma/group/YHIMPDF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STK8", "url": "https://www.orthodb.org/?gene=F1STK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13204", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13204", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13204:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13204:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08925", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08925", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QG24", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG24-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STK8", "url": "https://www.uniprot.org/uniprotkb/F1STK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STK8-1", "url": "https://www.uniprot.org/uniprotkb/F1STK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACAEYSFHVPSLEELVGVLQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKPRIAEVGGVPYLLPLVNKKKVYDLNKIAKEIQLPGAFILGAGAGPFQTLGFSSEFMPVIQTECEHKPPVNGSYFARVNPEDGGCLLEKYSEKYHDFGCALLANLFASEGQPGKPAEFSVCPLNSDEEVNNWLRFYEMKAPLVCLPVFVSRDPGFDLRLEHTHCFSHHGEGGHYHYDTTPDTVEYLGYFLPAEFLYRIDQPKETHLFGRD", "length": 265, "header": "tr|A0A5G2QPP0-1|A0A5G2QPP0_PIG Isoform 1 of Chromosome 9 C11orf54 homolog OS=Sus scrofa OX=9823 GN=C9H11orf54 PE=1 SV=1 CANONICAL=A0A5G2QPP0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG24-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG24/entry", "sequence": { "sequence": "MACAEYSFHVPSLEELVGVLQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKPRIAEVGGVPYLLPLVNKKKVYDLNKIAKEIQLPGAFILGAGAGPFQTLGFSSEVIEVKAKRRTGDLNFVTCMRQTLENHYGDKPVGMGGTFIIQKGKVKTHIMPAEFSVCPLNSDEEVNNWLRFYEMKAPLVCLPVFVSRDPGFDLRLEHTHCFSHHGEGGHYHYDTTPDTVEYLGYFLPAEFLYRIDQPKETHLFGRD", "length": 256, "header": "tr|A0A5G2QG24-1|A0A5G2QPP0_PIG Computationally mapped isoform of Chromosome 9 C11orf54 homolog OS=Sus scrofa OX=9823 GN=C9H11orf54 PE=1 SV=1 CANONICAL=A0A5G2QPP0-1" }, "locus": { "chromosome": "9", "start_pos": 26186364, "end_pos": 26170511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084117.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084117.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062731.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062731.1" } ] } }, { "isoform_ac": "A0A5G2QPP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0/entry", "sequence": { "sequence": "MACAEYSFHVPSLEELVGVLQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKPRIAEVGGVPYLLPLVNKKKVYDLNKIAKEIQLPGAFILGAGAGPFQTLGFSSEFMPVIQTECEHKPPVNGSYFARVNPEDGGCLLEKYSEKYHDFGCALLANLFASEGQPGKPAEFSVCPLNSDEEVNNWLRFYEMKAPLVCLPVFVSRDPGFDLRLEHTHCFSHHGEGGHYHYDTTPDTVEYLGYFLPAEFLYRIDQPKETHLFGRD", "length": 265, "header": "tr|A0A5G2QPP0-1|A0A5G2QPP0_PIG Isoform 1 of Chromosome 9 C11orf54 homolog OS=Sus scrofa OX=9823 GN=C9H11orf54 PE=1 SV=1 CANONICAL=A0A5G2QPP0-1" }, "locus": { "chromosome": "9", "start_pos": 26186364, "end_pos": 26170511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060252.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060252.1" } ] } }, { "isoform_ac": "F1STK8-1", "url": "https://www.uniprot.org/uniprotkb/F1STK8/entry", "sequence": { "sequence": "MACAEYSFHVPSLEELVGVLQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKPRIAEVGGVPYLLPLVNKKKVYDLNKIAKEIQLPGAFILGAGAGPFQTLGFSSEFMPVIQTECEHKPPVNGSYFARVNPEDGGCLLEKYSEKYHDFGCALLANLFASEGQPGKVIEVKAKRRTGDLNFVTCMRQTLENHYGDKPVGMGGTFIIQKGKVKTHIMPAEFSVCPLNSDEEVNNWLRFYEMKAPLVCLPVFVSRDPGFDLRLEHTHCFSHHGEGGHYHYDTTPDTVEYLGYFLPAEFLYRIDQPKETHLFGRD", "length": 315, "header": "tr|F1STK8-1|F1STK8_PIG Computationally mapped isoform of Chromosome 9 C11orf54 homolog OS=Sus scrofa OX=9823 GN=C11orf54 PE=1 SV=2 CANONICAL=A0A5G2QPP0-1" }, "locus": { "chromosome": "9", "start_pos": 26186364, "end_pos": 26170511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016307.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016307.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015870.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015870.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG24", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LLV6-1", "protein_name": "Ester hydrolase C11orf54 homolog isoform X1", "gene_name": "CUNH11orf54", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MACIEFSFHVPSLEELAEVLQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGQTRIAEVGGVPYLMPLANKTKVYDLNEIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPIVQTASENNRPVNESYFARINPADGSCLLEKYSQKYHDFGCALLANLFASEGQPGKVIEVQAKRRTGQLNFVTCMRQTLEKHYGNKPVGMGGTFIVQKGNVKAHIMPAEFSSCPLNSDEAVNKWLHFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEGGHYHYDTTPDTVEYLGYFSPAQFLYRIDQPKETHAFGRD", "length": 315 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2HJH3-1", "protein_name": "Beta-keto L-gulonate decarboxylase", "gene_name": "C29H11orf54", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACAEYSFHVPSLEELVGVLQKGLTDNFAEVQVSVVDCPDLTKEPFTFPIKGICGKTRIAEVGGVPYLLPLVNEKKVYDLNKIAKDIQLPGAFVLGAGAGPFQTLGFNSEFMLLVQTESEHRPPVNGSYFARVNPADGGCLLEKYSEKYHDFGCALLANLFASEGQPGKVIEVKVKRRTGKLNFVTCMRQTLEKHYGDKPVGMGGAFIIQKGKVKTHIMPAEFSSCPLNSDEDVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHCFSHHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSFGRD", "length": 315 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6NWE0-1", "protein_name": "Ester hydrolase C11orf54 homolog", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDNSGKTEKFQLHVPNLEELCQVLESGLNKNFSDVKVSVTDCPDLTQQPFGFPVKGLCGKPRITDVGGVPNLIPLVKLDKVYNMNSVSKEVELPGAFILGAGAISFKTAGINGELMPLVLTEAEGRSAVNASYFSSINPEDGKCLQEKYSDRFDDCDFGLLANLYACEGKPGKVIEVKACRRTGEDSLVSCMRKTMAEHYGEKSVALGGTFIIQKGKAKIHIMPREFSVCPLNTDEDVNNWLRHFEVSAPLIFQTVMISRDPGLDLRVEHTHGFSHHGEGGHYYTDTTPNTVEYLGYFLPAETVYRIDRPTETHNVGRD", "length": 319 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91V76-1", "protein_name": "Beta-keto L-gulonate decarboxylase", "gene_name": "Bkgd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MACSEFSFHMPSLEELAEVLQKGLTDNFADVQVSVVDCPDLTKEPFTFPVRGICGQTRIAEVGGVPYLLPLVNKKKVYDLNEIAKVIKLPGAFILGAGAGPFQTLGFNSEFMPIVQTASEHNQPVNGSYFAHKNPADGACLLEKYSQKYHDFGCALLANLFASEGQPGKVIEVQAKRRTGELNFVSCMRQTLEEHYGDKPVGMGGTFIVQKGKVKAHIMPAEFSSCPLNSDEAVNKWLHFYEMKAPLVCLPVFVSKDPGLDLRLEHTHFFSHHGEGGHYHYDTTPDTVEYLGYFSPAQFLYRIDQPKETHAFGRD", "length": 315 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0W9-1", "protein_name": "Beta-keto L-gulonate decarboxylase", "gene_name": "BKGD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLPLVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKCHDFQCALLANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRETLEKHYGNKPIGMGGTFIIQKGKVKSHIMPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGFDLRLEHTHFFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD", "length": 315 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W0J9-1", "protein_name": "DUF1907 domain-containing protein", "gene_name": "CT9987", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSQNQLSTEQLLFEEKPLYVPPLSELQNVIQGALAANFANVNVSVGPCPDLKAKQFGLVESGLGGKPTLLEAGGPPFLLPLVQRDKLYNIAEITRKIQGPGTVFAVGAGAGPWPIRGSNCEGIFNLSVNEKDELTNGSYTATVRGEQEECVLEKIPHTEPRCALLLNLFLSQGKPGQVLKITAKQRTGEQNFIECIRKGLENHYGDKVVGLGGIFLIKKGAAHQHVMRDFSKTPINSDEEVNEWLKFYEMPAQLNAVGTLVTKEHDLDLRLQHFHSFSFSNWGGHYHYDTTPDIVEYEAYLNVAERVVRVDKPVATHKVGRD", "length": 322 }, "evidence": [ { "id": "A0A5G2QPP0", "url": "https://omabrowser.org/oma/group/A0A5G2QPP0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" }, { "name": "hydrolase activity, acting on ester bonds", "id": "GO:0016788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016788", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" }, { "name": "regulation of DNA repair", "id": "GO:0006282", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006282", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QPP0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 265, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QPP0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QPP0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QPP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPP0" }, { "id": "SM01168", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01168" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF1907", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 253, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR18-1", "uniprot_ac": "A0A5G2QR18", "uniprot_id": "A0A5G2QR18_PIG", "mass": { "chemical_mass": 56927.0, "monoisotopic_mass": 56927.0 }, "refseq": {}, "gene_names": [ { "name": "AJUBA", "type": "recommended", "evidence": [ { "id": "A0A5G2QR18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ] } ], "protein_names": [ { "name": "Ajuba LIM protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AJUBA", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18", "locus": { "chromosome": "7", "start_pos": 76076585, "end_pos": 76063058, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029201", "url": "https://www.ensembl.org/id/ENSSSCG00000029201" } ] } } ], "crossref": [ { "id": "A0A5G2QR18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029201", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029201", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09352", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09352", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09355", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09355", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09438", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09438", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626166", "url": "https://www.ncbi.nlm.nih.gov/gene/100626166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626166", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQGTANY", "url": "https://omabrowser.org/oma/group/HQGTANY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L8V8", "url": "https://www.orthodb.org/?gene=I3L8V8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24219:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24219:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9841922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8V8", "url": "https://www.uniprot.org/uniprotkb/I3L8V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8V8-1", "url": "https://www.uniprot.org/uniprotkb/I3L8V8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERLGEKASRLLEKFGRRKGESSRSGSDGTPGPGKGRQSGLGGPRKSGPRGATGGLGDEPLEPAREQGPLDAERNPRGSFEAQRYEASFPGVPPPTRALPLPQSLPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGVPAGYSSGGVPSAYPELHAALDRLCAHRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAAGARYQDELTALLRLTGGTGGREAGARGEPSGIEPSGLEEPPGAFVQEAARTRIREPESREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCVVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLNARQPSANYI", "length": 538, "header": "tr|A0A5G2QR18-1|A0A5G2QR18_PIG Isoform 1 of Ajuba LIM protein OS=Sus scrofa OX=9823 GN=AJUBA PE=4 SV=1 CANONICAL=A0A5G2QR18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18/entry", "sequence": { "sequence": "MERLGEKASRLLEKFGRRKGESSRSGSDGTPGPGKGRQSGLGGPRKSGPRGATGGLGDEPLEPAREQGPLDAERNPRGSFEAQRYEASFPGVPPPTRALPLPQSLPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGVPAGYSSGGVPSAYPELHAALDRLCAHRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAAGARYQDELTALLRLTGGTGGREAGARGEPSGIEPSGLEEPPGAFVQEAARTRIREPESREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCVVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLNARQPSANYI", "length": 538, "header": "tr|A0A5G2QR18-1|A0A5G2QR18_PIG Isoform 1 of Ajuba LIM protein OS=Sus scrofa OX=9823 GN=AJUBA PE=4 SV=1 CANONICAL=A0A5G2QR18-1" }, "locus": { "chromosome": "7", "start_pos": 76072441, "end_pos": 76063384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079253.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079253.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060725.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060725.1" } ] } }, { "isoform_ac": "I3L8V8-1", "url": "https://www.uniprot.org/uniprotkb/I3L8V8/entry", "sequence": { "sequence": "MERLGEKASRLLEKLRLSDSGSAKFGRRKGESSRSGSDGTPGPGKGRQSGLGGPRKSGPRGATGGLGDEPLEPAREQGPLDAERNPRGSFEAQRYEASFPGVPPPTRALPLPQSLPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGVPAGYSSGGVPSAYPELHAALDRLCAHRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAAGARYQDELTALLRLTGGTGGREAGARGEPSGIEPSGLEEPPGAFVQEAARTRIREPESREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCVVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLNARQPSANYI", "length": 548, "header": "tr|I3L8V8-1|A0A5G2QR18_PIG Computationally mapped isoform of Ajuba LIM protein OS=Sus scrofa OX=9823 GN=AJUBA PE=4 SV=2 CANONICAL=A0A5G2QR18-1" }, "locus": { "chromosome": "7", "start_pos": 76072441, "end_pos": 76063384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023963.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023963.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020469.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020469.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L8V8", "url": "https://www.uniprot.org/uniprotkb/I3L8V8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626166", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626166", "resource": "KEGG Pathway" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-9841922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "resource": "Reactome", "description": "MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BKA3-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERLGEKASRLLEKLRLSDSGSAKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGAAGGPGDEPLEPAREQGPLDAERNPRGSFEVPRYEGSFPGGPPPSRALPLPQSLPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGVPAGYSSGGVPSAYPELHAALDRLCAHRPAGFGCQESRHSYPPALGSPGALAGAGVGATGPLERRGAQPGRHSVTGYGDCAAGARYQDELTALLRLTVGTGGREAGVRGESAGIEASGLEEPPGAFVPEAARARIREPESREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCIVCNKCLDGIPFTVDFSNQVYCVTDYHKSYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLSARQPPANYI", "length": 548 }, "evidence": [ { "id": "A0A5G2QR18", "url": "https://omabrowser.org/oma/group/A0A5G2QR18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U2Z2-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "Ajuba", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERLGEKASRLLEKLRLSDSGSAKFGRRKGEASRSGSDGTPGAGKGRLSGLGGPRKSGHRGANGGPGDEALEPAREQGPLDAERNARGSFEAQRFEGSFPGGPPPTRALPLPLSSPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGASGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGLPLTTAPSGYSSGGVPSAYPELHAALDRLCAHRPVGFGCQESRHSYPPALGSPGALTGAVVGTAGPLERRGTQPGRHSVTGYGDCAAGARYQDELTALLRLTVATGGREAGARGEPLGIEPSGLEESPGSFVPEASRSRIREPEAREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCIVCNKCLDGVPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLSARQPPTNYI", "length": 548 }, "evidence": [ { "id": "A0A5G2QR18", "url": "https://omabrowser.org/oma/group/A0A5G2QR18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91XC0-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "Ajuba", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERLGEKASRLLEKLRLSDSGSAKFGRRKGEASRSGSDGTPGAGKGRLSGLGGPRKSGHRGANGGPGDEPLEPAREQGPLDAERNARGSFEAQRFEGSFPGGPPPTRALPLPLSSPPDFRLETTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGASGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGLPLTTAPAGYPGGAPSAYPELHAALDRLCAHRSVGFGCQESRHSYPPALGSPGALTGAVVGTAGPLERRGAQPGRHSVTGYGDCAAGARYQDELTALLRLTVATGGREAGARGEPSGIEPSGLEESPGPFVPEASRSRIREPEAREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCIVCNKCLDGVPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLSARQPSTNYI", "length": 547 }, "evidence": [ { "id": "A0A5G2QR18", "url": "https://omabrowser.org/oma/group/A0A5G2QR18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96IF1-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERLGEKASRLLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGATGGPGDEPLEPAREQGSLDAERNQRGSFEAPRYEGSFPAGPPPTRALPLPQSLPPDFRLEPTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDRLYAQRPAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAVGARYQDELTALLRLTVGTGGREAGARGEPSGIEPSGLEEPPGPFVPEAARARMREPEAREDYFGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYLFSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCIVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEGCCCFPLDGHLLCHGCHMQRLNARQPPANYI", "length": 538 }, "evidence": [ { "id": "A0A5G2QR18", "url": "https://omabrowser.org/oma/group/A0A5G2QR18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "protein kinase activator activity", "id": "GO:0030295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030295", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "alpha-catenin binding", "id": "GO:0045294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045294", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "response to hypoxia", "id": "GO:0001666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001666", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "miRNA-mediated gene silencing by inhibition of translation", "id": "GO:0035278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035278", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "negative regulation of hippo signaling", "id": "GO:0035331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035331", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "regulation of cellular response to hypoxia", "id": "GO:1900037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900037", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "anchoring junction", "id": "GO:0070161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070161", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 538, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR18" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QR18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR18" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 336, "end_pos": 397, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 30 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 382, "end_pos": 384 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "uniprot_ac": "A0A5G2QWK6", "uniprot_id": "A0A5G2QWK6_PIG", "mass": { "chemical_mass": 23380.0, "monoisotopic_mass": 23380.0 }, "refseq": {}, "gene_names": [ { "name": "CALM1", "type": "recommended", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ] }, { "name": "CALM2", "type": "recommended", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ] }, { "name": "CALM3", "type": "recommended", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ] }, { "name": "CALM1", "type": "synonym", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ] }, { "name": "CALM3", "type": "synonym", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ] } ], "protein_names": [ { "name": "Calmodulin 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CALM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6", "locus": { "chromosome": "6", "start_pos": 52516703, "end_pos": 52506674, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022545", "url": "https://www.ensembl.org/id/ENSSSCG00000022545" } ] } } ], "crossref": [ { "id": "A0A5G2QWK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000022545", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022545", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000025768", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025768", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154056", "url": "https://www.ncbi.nlm.nih.gov/gene/100154056", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100522926", "url": "https://www.ncbi.nlm.nih.gov/gene/100522926", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "396838", "url": "https://www.ncbi.nlm.nih.gov/gene/396838", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F2Z5G3", "url": "https://www.ebi.ac.uk/intact/interactors/id:F2Z5G3*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154056", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154056", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:100522926", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522926", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:396838", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396838", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WATHRNL", "url": "https://omabrowser.org/oma/group/WATHRNL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5G3", "url": "https://www.orthodb.org/?gene=F2Z5G3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUG4", "url": "https://www.uniprot.org/uniprotkb/A0A287AUG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SG58", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SG58-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7N5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6L1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCR3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIZ3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5G3", "url": "https://www.uniprot.org/uniprotkb/F2Z5G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5G3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214, "header": "tr|A0A5G2QWK6-1|A0A5G2QWK6_PIG Isoform 1 of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=2 CANONICAL=A0A5G2QWK6-1" }, "isoforms": [ { "isoform_ac": "A0A287AUG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUG4/entry", "sequence": { "sequence": "ADQLTEEQIAEFKEAFSLFDKDGDGTITTKEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNRLHFFSLVLTGVPFRICTQVHRFIDIH", "length": 154, "header": "tr|A0A287AUG4-1|A0A287AUG4_PIG Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 OS=Sus scrofa OX=9823 GN=CALM1 PE=1 SV=2 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "7", "start_pos": 112167804, "end_pos": 112163779, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039600.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039600.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047574.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047574.3" } ] } }, { "isoform_ac": "A0A4X1SG58-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG58/entry", "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDEMIREADIDGDGQVNYEEFVQMMTAK", "length": 83, "header": "tr|A0A4X1SG58-1|A0A4X1SG58_PIG Computationally mapped isoform of EF-hand calcium-binding domain-containing protein 11 OS=Sus scrofa OX=9823 GN=CALM2 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "3", "start_pos": 93385748, "end_pos": 93372113, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062446.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062446.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052711.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052711.2" } ] } }, { "isoform_ac": "A0A5G2Q7N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7N5/entry", "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLVSRPLPLPRGDLAGSPTSALSPCPPLPSPTCLPPRTPAESMIRDLASDFRLWDKEVNVGSSVVWIFLFPFSLHFICPPPPRSIKWLFLGPAQL", "length": 206, "header": "tr|A0A5G2Q7N5-1|A0A5G2QWK6_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52516454, "end_pos": 52507144, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076501.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076501.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059835.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059835.1" } ] } }, { "isoform_ac": "A0A5G2QWK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6/entry", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214, "header": "tr|A0A5G2QWK6-1|A0A5G2QWK6_PIG Isoform 1 of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=2 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52516533, "end_pos": 52513953, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075163.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075163.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068530.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068530.2" } ] } }, { "isoform_ac": "A0A5G2R6L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6L1/entry", "sequence": { "sequence": "GFGEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGEPTPTRHPQGREGGVGLSPAPQLTSPSLPSQSLYR", "length": 168, "header": "tr|A0A5G2R6L1-1|A0A5G2R6L1_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52515054, "end_pos": 52513387, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068935.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068935.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072892.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072892.2" } ] } }, { "isoform_ac": "A0A8W4FCR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCR3/entry", "sequence": { "sequence": "QADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214, "header": "tr|A0A8W4FCR3-1|A0A5G2QWK6_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52516533, "end_pos": 52511596, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093798.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093798.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077106.1" } ] } }, { "isoform_ac": "A0A8W4FIQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIQ6/entry", "sequence": { "sequence": "QADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLVSRPLPLPRGDLAGSPTSALSPCPPLPSPTCLPPRTPAESMIRDLASDFRLWDKEVNVGSSVVWIFLFPFSLHFICPPPPRSIKWLFLGPAQL", "length": 206, "header": "tr|A0A8W4FIQ6-1|A0A8W4FIQ6_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52516454, "end_pos": 52511596, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103007.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103007.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079329.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079329.1" } ] } }, { "isoform_ac": "A0A8W4FIZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIZ3/entry", "sequence": { "sequence": "MSLEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGEPTPTRHPQGREGGVGLSPAPQLTSPSLPSQSLYR", "length": 165, "header": "tr|A0A8W4FIZ3-1|A0A8W4FIZ3_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "6", "start_pos": 52515054, "end_pos": 52514090, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098035.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098035.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079425.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079425.1" } ] } }, { "isoform_ac": "F2Z5G3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5G3/entry", "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK", "length": 149, "header": "tr|F2Z5G3-1|A0A5G2QWK6_PIG Computationally mapped isoform of Calmodulin 3 OS=Sus scrofa OX=9823 GN=CALM3 PE=1 SV=1 CANONICAL=A0A5G2QWK6-1" }, "locus": { "chromosome": "3", "start_pos": 93385748, "end_pos": 93372113, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009234.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009234.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009000.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009000.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCR3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154056", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154056", "resource": "KEGG Pathway" }, { "id": "ssc:100522926", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522926", "resource": "KEGG Pathway" }, { "id": "ssc:396838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396838", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62152-1", "protein_name": "Calmodulin", "gene_name": "Cam", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK", "length": 149 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "A0A5G2QWK6", "url": "https://omabrowser.org/oma/group/A0A5G2QWK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "calcineurin-mediated signaling", "id": "GO:0097720", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097720", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "negative regulation of calcium ion export across plasma membrane", "id": "GO:1905913", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905913", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "regulation of heart rate", "id": "GO:0002027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion", "id": "GO:0010881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010881", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "detection of calcium ion", "id": "GO:0005513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005513", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "regulation of cell communication by electrical coupling involved in cardiac conduction", "id": "GO:1901844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901844", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "regulation of cardiac muscle cell action potential", "id": "GO:0098901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "presynaptic endocytosis", "id": "GO:0140238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140238", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 13, "go_terms": [ { "name": "calyx of Held", "id": "GO:0044305", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044305", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "myelin sheath", "id": "GO:0043209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043209", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "sarcomere", "id": "GO:0030017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "vesicle", "id": "GO:0031982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031982", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "calcium channel complex", "id": "GO:0034704", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034704", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "spindle microtubule", "id": "GO:0005876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005876", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "catalytic complex", "id": "GO:1902494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902494", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "presynaptic cytosol", "id": "GO:0099523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099523", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "organelle", "id": "GO:0043226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043226", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 12, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "adenylate cyclase binding", "id": "GO:0008179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008179", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "titin binding", "id": "GO:0031432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031432", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "protein phosphatase activator activity", "id": "GO:0072542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072542", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "adenylate cyclase activator activity", "id": "GO:0010856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "transporter inhibitor activity", "id": "GO:0141110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141110", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" }, { "name": "calcium channel inhibitor activity", "id": "GO:0019855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 214, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 44, "start_aa": "Gly", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ12-1", "uniprot_ac": "A0A5G2QZ12", "uniprot_id": "A0A5G2QZ12_PIG", "mass": { "chemical_mass": 148337.0, "monoisotopic_mass": 148337.0 }, "refseq": { "ac": "XP_020949748", "name": "capping protein, Arp2/3 and myosin-I linker protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949748" }, "gene_names": [ { "name": "CARMIL2", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ] }, { "name": "CARMIL2", "type": "synonym", "evidence": [ { "id": "XP_020949748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949748" } ] } ], "protein_names": [ { "name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry#names_and_taxonomy" } ] }, { "name": "Capping protein regulator and myosin 1 linker 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry#names_and_taxonomy" } ] }, { "name": "F-actin-uncapping protein RLTPR", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry#names_and_taxonomy" } ] }, { "name": "Leucine-rich repeat-containing protein 16C", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry#names_and_taxonomy" } ] }, { "name": "RGD, leucine-rich repeat, tropomodulin and proline-rich-containing protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry#names_and_taxonomy" } ] }, { "name": "capping protein, Arp2/3 and myosin-I linker protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020949748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949748" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CARMIL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12", "locus": { "chromosome": "6", "start_pos": 28277641, "end_pos": 28265135, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022722", "url": "https://www.ensembl.org/id/ENSSSCG00000022722" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022722", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022722", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624425", "url": "https://www.ncbi.nlm.nih.gov/gene/100624425", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24112:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24112:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16000", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16000", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949748", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGX2", "url": "https://www.uniprot.org/uniprotkb/I3LGX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGX2-1", "url": "https://www.uniprot.org/uniprotkb/I3LGX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQTPDGISCELRGEITRFLWPKEAELLLKTWLPEREGAEQGHVLALLRWRAYLLHTCLPLRVDCTFSYLEVQAMALQETPPQVTFELESLPDLVLEFPGVAALEQLAQHIAAAIRKVFPRSTLGKLFRRPTPPSMLARLERSSPSEATSPSSPCGGFSETYEALCDYNGFPFREEIQWDVDTIYHRQGCRHFSLGDFSHLGSRDLALSVAALSYNLWFRCLSCVDMKLSLEVSEQILHMLSQSSHLEELVLETCGLRGDFVRRLAQVLAGHMTSGLRELSLAGNLLDDRGMAALSRHLERRPGALRRLSLAQTGLTPRGMRALGRALASNAAFDSVLTHLDLSGNPGALGASEDNGGLYSFLSRPNVLTFLNLSGTDTALDTLFAALSRGCCTSLVHLDASRNVFSRMKSRAAPDTLQLFLSHAGMLRHLGLAGCKLPPDALRALLEGLALNTHMDDLHLDLSACELGSVGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTLVLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGASVLLRALGTNPNLTALDISGNAMGDTGAKMLAKALRVNTRLRSVVWDRNHTSALGLLDVAQALEQNRSLKAMPLPLNDVAQAQRSRPELTARAVHQIQACLLRNNRADHASADRTSRPQPLGLGSDPSEQEVNELCQSVQEHVELLGCGAGPQGEAAVHQAEDAIQNANFSLSILPILYEAGSSPSHQWQLRRKLEGLLGQVGEVCRRDIQDFTQATLDTTRSLCPQMLQGPRWREQLEGVLVGSRGLPELLPEHLLQDAFTRLRDMRLSVTGTLAESIVAQALAGLSAARDRLVESLAQQATEAVPPVVPAVEGGDPSPLGPRQLKDLFFPEEKEQEDEEDQKDDSPPEKWPVSSHCLHTHSAAEEPEPELAAPGEDAEPQAGPSARGSPSPATPGPPADPPPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQDRLWAPEEDPATEGGSTPVPRTLRKKLGTLFAFKKPRSTRGPRPDLETSPGAAPRTRKTTLGDLLRPPARSGRGEEPGGAEGGTSSPDPTRRSRPRYTRESKAYSMILLPAEEEETTLGARPDKRRPLERGDTELAPSFEQRVQVMLQRIGVSRGSGSADGKRKQSKDGEIKKAGSDGDIMDSSTETPPISIKSRTHSVSADPSCRPGPGGQGPEPATWKTLGQQLNAELRGRGWGQQDGPGPPSPCPSPSPRRASPSPDSLGLPEDPCLSSQNTERPLRLQRSPVLKRRPKLETPPSPSVGSGLGAEPLLPQTSEPSSPEQSPPSPATDQRGGGPNP", "length": 1370, "header": "tr|A0A5G2QZ12-1|A0A5G2QZ12_PIG Isoform 1 of Capping protein, Arp2/3 and myosin-I linker protein 2 OS=Sus scrofa OX=9823 GN=CARMIL2 PE=3 SV=1 CANONICAL=A0A5G2QZ12-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12/entry", "sequence": { "sequence": "MAQTPDGISCELRGEITRFLWPKEAELLLKTWLPEREGAEQGHVLALLRWRAYLLHTCLPLRVDCTFSYLEVQAMALQETPPQVTFELESLPDLVLEFPGVAALEQLAQHIAAAIRKVFPRSTLGKLFRRPTPPSMLARLERSSPSEATSPSSPCGGFSETYEALCDYNGFPFREEIQWDVDTIYHRQGCRHFSLGDFSHLGSRDLALSVAALSYNLWFRCLSCVDMKLSLEVSEQILHMLSQSSHLEELVLETCGLRGDFVRRLAQVLAGHMTSGLRELSLAGNLLDDRGMAALSRHLERRPGALRRLSLAQTGLTPRGMRALGRALASNAAFDSVLTHLDLSGNPGALGASEDNGGLYSFLSRPNVLTFLNLSGTDTALDTLFAALSRGCCTSLVHLDASRNVFSRMKSRAAPDTLQLFLSHAGMLRHLGLAGCKLPPDALRALLEGLALNTHMDDLHLDLSACELGSVGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTLVLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGASVLLRALGTNPNLTALDISGNAMGDTGAKMLAKALRVNTRLRSVVWDRNHTSALGLLDVAQALEQNRSLKAMPLPLNDVAQAQRSRPELTARAVHQIQACLLRNNRADHASADRTSRPQPLGLGSDPSEQEVNELCQSVQEHVELLGCGAGPQGEAAVHQAEDAIQNANFSLSILPILYEAGSSPSHQWQLRRKLEGLLGQVGEVCRRDIQDFTQATLDTTRSLCPQMLQGPRWREQLEGVLVGSRGLPELLPEHLLQDAFTRLRDMRLSVTGTLAESIVAQALAGLSAARDRLVESLAQQATEAVPPVVPAVEGGDPSPLGPRQLKDLFFPEEKEQEDEEDQKDDSPPEKWPVSSHCLHTHSAAEEPEPELAAPGEDAEPQAGPSARGSPSPATPGPPADPPPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQDRLWAPEEDPATEGGSTPVPRTLRKKLGTLFAFKKPRSTRGPRPDLETSPGAAPRTRKTTLGDLLRPPARSGRGEEPGGAEGGTSSPDPTRRSRPRYTRESKAYSMILLPAEEEETTLGARPDKRRPLERGDTELAPSFEQRVQVMLQRIGVSRGSGSADGKRKQSKDGEIKKAGSDGDIMDSSTETPPISIKSRTHSVSADPSCRPGPGGQGPEPATWKTLGQQLNAELRGRGWGQQDGPGPPSPCPSPSPRRASPSPDSLGLPEDPCLSSQNTERPLRLQRSPVLKRRPKLETPPSPSVGSGLGAEPLLPQTSEPSSPEQSPPSPATDQRGGGPNP", "length": 1370, "header": "tr|A0A5G2QZ12-1|A0A5G2QZ12_PIG Isoform 1 of Capping protein, Arp2/3 and myosin-I linker protein 2 OS=Sus scrofa OX=9823 GN=CARMIL2 PE=3 SV=1 CANONICAL=A0A5G2QZ12-1" }, "locus": { "chromosome": "6", "start_pos": 28277596, "end_pos": 28265262, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067985.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067985.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070136.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070136.1" } ] } }, { "isoform_ac": "I3LGX2-1", "url": "https://www.uniprot.org/uniprotkb/I3LGX2/entry", "sequence": { "sequence": "MESLPAPHLPPPEGESQGSAATPCPPAASLIRAASTVLSILSFWALPFQQHWVPSSRQVDCTFSYLEVQAMALQETPPQVTFELESLPDLVLEFPGVAALEQLAQHIAAAIRKVFPRSTLGKLFRRPTPPSMLARLERSSPSEATSPSSPCGGFSETYEALCDYNGFPFREEIQWDVDTIYHRQGCRHFSLGDFSHLGSRDLALSVAALSYNLWFRCLSCVDMKLSLEVSEQILHMLSQSSHLEELVLETCGLRGDFVRRLAQVLAGHMTSGLRELSLAGNLLDDRGMAALSRHLERRPGALRRLSLAQTGLTPRGMRALGRALASNAAFDSVLTHLDLSGNPGALGASEDNGGLYSFLSRPNVLTFLNLSGTDTALDTLFAALSRGCCTSLVHLDASRNVFSRMKSRAAPDTLQLFLSHAGMLRHLGLAGCKLPPDALRALLEGLALNTHMDDLHLDLSACELGSVGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTLVLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGASVLLRALGTNPNLTALDISGNAMGDTGAKMLAKALRVNTRLRSVVWDRNHTSALGLLDVAQALEQNRSLKAMPLPLNDVAQAQRSRPELTARAVHQIQACLLRNNRADHASADRTSRPQPLGLGSDPSEQEVNELCQSVQEHVELLGCGAGPQGEAAVHQAEDAIQNANFSLSILPILYEAGSSPSHQWQLRRKLEGLLGQVGEVCRRDIQDFTQATLDTTRSLCPQMLQGPRWREQLEGVLVGSRGLPELLPEHLLQDAFTRLRDMRLSVTGTLAESIVAQALAGLSAARDRLVESLAQQATEAVPPVVPAVEGGDPSPLGPRQLKDLFFPEEKEQEDEEDQKDDSPPEKWPVSSHCLHTHSAAEEPEPELAAPGEDAEPQAGPSARGSPSPATPGPPADPPPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQDRLWAPEEDPATEGGSTPVPRTLRKKLGTLFAFKKPRSTRGPRPDLETSPGAAPRTRKTTLGDLLRPPARSGRGEEPGGAEGGTSSPDPTRRSRPRYTRESKAYSMILLPAEEEETTLGARPDKRRPLERGDTELAPSFEQRVQVMLQRIGVSRGSGSADGKRKQSKDGEIKKAGSDGDIMDSSTETPPISIKSRTHSVSADPSCRPGPGGQGPEPATWKTLGQQLNAELRGRGWGQQDGPGPPSPCPSPSPRRASPSPDSLGLPEDPCLSSQNTDGQLRPRPLPAGRRAVSVHEDQLQAPVERPLRLQRSPVLKRRPKLETPPSPSVGSGLGAEPLLPQTSEPSSPEQSPPSPATDQRGGGPNP", "length": 1393, "header": "tr|I3LGX2-1|A0A5G2QZ12_PIG Computationally mapped isoform of Capping protein, Arp2/3 and myosin-I linker protein 2 OS=Sus scrofa OX=9823 GN=CARMIL2 PE=3 SV=3 CANONICAL=A0A5G2QZ12-1" }, "locus": { "chromosome": "6", "start_pos": 28277596, "end_pos": 28265757, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024773.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024773.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023316.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023316.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 957, "start_aa": "Thr", "end_pos": 957, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr957", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LGX2", "url": "https://www.uniprot.org/uniprotkb/I3LGX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "macropinosome", "id": "GO:0044354", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044354", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "intermediate filament cytoskeleton", "id": "GO:0045111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045111", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "regulation of Arp2/3 complex-mediated actin nucleation", "id": "GO:0034315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034315", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "actin filament network formation", "id": "GO:0051639", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051639", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "positive regulation of lamellipodium assembly", "id": "GO:0010592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010592", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "wound healing, spreading of cells", "id": "GO:0044319", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044319", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "establishment or maintenance of monopolar cell polarity", "id": "GO:0061339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061339", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "positive regulation of extracellular matrix disassembly", "id": "GO:0090091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090091", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "positive regulation of ruffle assembly", "id": "GO:1900029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900029", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" }, { "name": "negative regulation of barbed-end actin filament capping", "id": "GO:2000813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000813", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" }, { "id": "PF16000", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16000" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CARMIL C-terminal", "eco_id": "ECO_0000259", "start_pos": 783, "end_pos": 1072, "start_aa": "Thr", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QZ12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ12" }, { "id": "PF17888", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CARMIL pleckstrin homology", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 120, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 957 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 373, "end_pos": 375 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 611, "end_pos": 613 }, { "start_pos": 628, "end_pos": 630 }, { "start_pos": 731, "end_pos": 733 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTH5-1", "uniprot_ac": "A0A5G2QTH5", "uniprot_id": "A0A5G2QTH5_PIG", "mass": { "chemical_mass": 68859.0, "monoisotopic_mass": 68859.0 }, "refseq": { "ac": "XP_020917901", "name": "zinc finger protein 143 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917901" }, "gene_names": [ { "name": "ZNF143", "type": "recommended", "evidence": [ { "id": "A0A5G2QTH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ] }, { "name": "ZNF143", "type": "synonym", "evidence": [ { "id": "XP_020917901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917901" } ] } ], "protein_names": [ { "name": "Zinc finger protein 143", "type": "recommended", "evidence": [ { "id": "A0A5G2QTH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5/entry#names_and_taxonomy" } ] }, { "name": "Selenocysteine tRNA gene transcription-activating factor", "type": "synonym", "evidence": [ { "id": "A0A5G2QTH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 143 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020917901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917901" } ] } ], "function": [ { "annotation": "Transcription factor that activates expression of genes transcribed by both RNA polymerases II and III, and which is required to safeguard mitochondrial activity. Specifically recognizes and binds the Staf-binding site (SBS), a consensus DNA-binding motif present in thousands of promoters. Activates the gene for selenocysteine tRNA (tRNAsec). Activates expression of small nuclear RNA (snRNA) transcribed by RNA polymerases II and III. Also activates expression of mRNAs and acts as a key regulator of cell proliferation and differentiation by specifically activating expression of a subset of nuclear-encoded mitochondrial genes, thereby controlling mitochondrial function. Involved in the maintenance of embryonic stem cells by promoting association of POU5F1/OCT4 to promoters, leading to NANOG expresion.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRU1#function" }, { "database": "UniProtKB", "id": "ARBA00094347", "url": "https://www.uniprot.org/uniprotkb/ARBA00094347#function" }, { "database": "UniProtKB", "id": "I3LDQ7", "url": "https://www.uniprot.org/uniprotkb/I3LDQ7#function" }, { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF143", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5", "locus": { "chromosome": "9", "start_pos": 45187, "end_pos": 104736, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022070", "url": "https://www.ensembl.org/id/ENSSSCG00000022070" } ] } } ], "crossref": [ { "id": "A0A5G2QTH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100626411", "url": "https://www.ncbi.nlm.nih.gov/gene/100626411", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FPALMHG", "url": "https://omabrowser.org/oma/group/FPALMHG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020917901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917901", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QBY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDQ7", "url": "https://www.uniprot.org/uniprotkb/I3LDQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDQ7-1", "url": "https://www.uniprot.org/uniprotkb/I3LDQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMETQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHSSKDGKLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTGSGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTGHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQSEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAQDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 638, "header": "tr|A0A5G2QTH5-1|A0A5G2QTH5_PIG Isoform 1 of Zinc finger protein 143 OS=Sus scrofa OX=9823 GN=ZNF143 PE=3 SV=1 CANONICAL=A0A5G2QTH5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBY4/entry", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMETQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHSSKDGKLIDGQVIQLEDGSAAYVQHVPIPKSRDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTGSGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTGHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQSEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAQDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 577, "header": "tr|A0A5G2QBY4-1|A0A5G2QTH5_PIG Computationally mapped isoform of Zinc finger protein 143 OS=Sus scrofa OX=9823 GN=ZNF143 PE=3 SV=2 CANONICAL=A0A5G2QTH5-1" }, "locus": { "chromosome": "9", "start_pos": 90067, "end_pos": 46917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085597.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085597.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061028.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061028.2" } ] } }, { "isoform_ac": "A0A5G2QRU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRU1/entry", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMETQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHSSKDGKLIDGQVIQLEDGSAAYVQHVPIPKSNSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTGSGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTGHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQSEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAQDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 610, "header": "tr|A0A5G2QRU1-1|A0A5G2QRU1_PIG Computationally mapped isoform of Zinc finger protein 143 OS=Sus scrofa OX=9823 GN=ZNF143 PE=3 SV=1 CANONICAL=A0A5G2QTH5-1" }, "locus": { "chromosome": "9", "start_pos": 90067, "end_pos": 46917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074433.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074433.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066802.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066802.1" } ] } }, { "isoform_ac": "A0A5G2QTH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5/entry", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMETQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHSSKDGKLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTGSGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTGHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQSEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAQDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 638, "header": "tr|A0A5G2QTH5-1|A0A5G2QTH5_PIG Isoform 1 of Zinc finger protein 143 OS=Sus scrofa OX=9823 GN=ZNF143 PE=3 SV=1 CANONICAL=A0A5G2QTH5-1" }, "locus": { "chromosome": "9", "start_pos": 90067, "end_pos": 46917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077860.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077860.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061460.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061460.1" } ] } }, { "isoform_ac": "I3LDQ7-1", "url": "https://www.uniprot.org/uniprotkb/I3LDQ7/entry", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMETQHVTLCLTEAVTVADGKLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTGSGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTGHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQSEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAQDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 607, "header": "tr|I3LDQ7-1|I3LDQ7_PIG Computationally mapped isoform of Zinc finger protein 143 OS=Sus scrofa OX=9823 GN=ZNF143 PE=3 SV=3 CANONICAL=A0A5G2QTH5-1" }, "locus": { "chromosome": "9", "start_pos": 90067, "end_pos": 46917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032233.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032233.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022191.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022191.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FRC5-1", "protein_name": "Zinc finger protein 143", "gene_name": "Znf143", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVVGRRNCWKIFSEKMLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDGRLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVTSTGLIGENEQEKKMQIVLQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGDDVLKGSQITYVTGVEGEDIVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 653 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1C5B8-1", "protein_name": "Zinc finger protein 143", "gene_name": "ZNF143", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLAQINRDSQGMTEFSGGGMEAQHVTLCLTEAVAVQDGDNLENMEGVSLQAVTLADGSTAYIQHNSKDGKLMDGQVIQLEDGSAAYVQHVPMTKSRDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQMPQSDTILAIQADGTVAGLHTGDAAIDPDTITALEQYAAKVSIDGNDSVSSTGMIGENEQEKKMQIVLQGHGTRVAAKSQQSGEKAFRCDYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHPGCGKAFATGYGLKSHIRTHTGEKPYRCTEENCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGEDVLKGSQIAYVTGVEGEDVISAQVATVTQSGLGQQVALISQDGTQHVNISQADMQAIGNTITMVTQDGTTITVPAHDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHSTSPEIGHQQHGHHLVTTEARPVTLLATSNGTQIAVQLGEQQSLEEAIRIASRIQQGETPGIDD", "length": 637 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O70230-1", "protein_name": "Zinc finger protein 143", "gene_name": "Znf143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDGRLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSDGVTSTGMIGENEQEKKMQIVLQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGDDVLKGSQITYVTGVDGEDIVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 638 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P52747-1", "protein_name": "Zinc finger protein 143", "gene_name": "ZNF143", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDAKLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSALQAVQLEDGTTAYIHHAVQVPQSDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSESVAGTGMIGENEQEKKMQIVLQGHATRVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGEDVLKGSQITYVTGVEGDDVVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPAHDAVISSAGTHSVAMVTAEGTEGEQVAIVAQDLAAFHTASSEMGHQQHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 638 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYE3-1", "protein_name": "Zinc finger protein 143B", "gene_name": "znf143b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLLAQVNRDTQGMEFQSVDGDPQQVTLCLTEAVTVADDNIDGMDTVSLQAVTLVDGSTAYIQHSPKVSLTENKIMEGQVIQLEDGSAAYVQHLPMSKTGGEGLRLEDGQAVQLEDGTTAYIHAPKETYDQGGLQAVQLEDGTTAYIQHMPQSNTILAIQADGTVADLQTEGTIDAETISVLEQYSTKMEATECGTGLIGRGDSDGVHMQIVLQGQDCRSPRIQHVGEKAFRCEHEGCGKLYTTAHHLKVHERSHTGDKPYICDHLGCGKKFATGYGLKSHVRTHTGEKPYRCQELNCLKSFKTSGDLQKHTRTHTGEKPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCAEPNCGRAFASATNYKNHMRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTPCKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEGYFEPPAEAIDDPGLMYTPSVVDDDSGSEQVSGSEIMGQHHVALISQDGTQQVLSQADMQAMGGTITMVTQEGTTITIPAHEAMLSSGGAHSVTMVSADGTEGQVAIVTPDLAAYQTEEGELIQDQEQHEVSTSPHPVTLLATSNGTHIAVQLSDHPSLEEAIRIASRIQQGETPGMDD", "length": 623 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XIU2-1", "protein_name": "Zinc finger protein 143", "gene_name": "Znf143", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLAQINRDSQGMTEFPGGGMEAQHVTLCLTEAVTVADGDNLENMEGVSLQAVTLADGSTAYIQHNSKDGRLIDGQVIQLEDGSAAYVQHVPIPKSTGDSLRLEDGQAVQLEDGTTAFIHHTSKDSYDQSSLQAVQLEDGTTAYIHHAVQVPQPDTILAIQADGTVAGLHTGDATIDPDTISALEQYAAKVSIDGSEGVTSTGLIGENEQEKKMQIVLQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKHHVVHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQEAFFEPPPGQGDDVLKGSQITYVTGVEGEDIVSTQVATVTQSGLSQQVTLISQDGTQHVNISQADMQAIGNTITMVTQDGTPITVPTHDAVISSAGTHSVAMVTAEGTEGQQVAIVAQDLAAFHAASSEMGHQPHSHHLVTTETRPLTLVATSNGTQIAVQLGEQPSLEEAIRIASRIQQGETPGLDD", "length": 638 }, "evidence": [ { "id": "A0A5G2QTH5", "url": "https://omabrowser.org/oma/group/A0A5G2QTH5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "core promoter sequence-specific DNA binding", "id": "GO:0001046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001046", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "transcription regulator activator activity", "id": "GO:0140537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140537", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTH5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 638, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTH5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTH5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 237, "end_pos": 266, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 303, "end_pos": 305 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 604, "end_pos": 606 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTU8-1", "uniprot_ac": "A0A5G2QTU8", "uniprot_id": "A0A5G2QTU8_PIG", "mass": { "chemical_mass": 38736.0, "monoisotopic_mass": 38736.0 }, "refseq": {}, "gene_names": [ { "name": "DTNBP1", "type": "recommended", "evidence": [ { "id": "A0A5G2QTU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ] } ], "protein_names": [ { "name": "Dystrobrevin binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QTU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DTNBP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8", "locus": { "chromosome": "7", "start_pos": 11600795, "end_pos": 11720318, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001062", "url": "https://www.ensembl.org/id/ENSSSCG00000001062" } ] } } ], "crossref": [ { "id": "A0A5G2QTU8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001062", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001062", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007531", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007531", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16294", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16294", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16294:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16294:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-432722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QDM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLETLRERLLSVQQDFTSGLKTLSDKSREVKVKNKPRIFLVYSLYFEFFFAFLRYEDTWAALHRRAKECARAGELVDSEVVMLSAHWEKKQTSLLELQQQLQQLPGLIADLESMTANLTHLEASFEEVENHLLNLEDLCGQCELERYKHMQSQQLENYKKNKRKELETFKAELDVEHTQKVLEMEQAQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEDNTALSPVLGPDASPGLHGVRLQVPEPSRPPATPASPSSAGTDPAAPDPSEGGESPVVQSDEEGVEVDTALATLHTDDSDS", "length": 342, "header": "tr|A0A5G2QTU8-1|A0A5G2QTU8_PIG Isoform 1 of Dystrobrevin binding protein 1 OS=Sus scrofa OX=9823 GN=DTNBP1 PE=3 SV=1 CANONICAL=A0A5G2QTU8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM9/entry", "sequence": { "sequence": "MLETLRERLLSVQQDFTSGLKTLSDKSREVKVKNKPRTVPYLPKYSAGLELLSRYEDTWAALHRRAKECAHWEKKQTSLLELQQQLQQLPGLIADLESMTANLTHLEASFEEVENHLLNLEDLCGQCELERYKHMQSQQLENYKKNKRKELETFKAELDVEHTQKVLEMEQAQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEDNTALSPVLGPDASPGLHGVRLQVPEPSRPPATPASPSSAGTDPAAPDPSEGGESPVVQSDEEGVEVDTALATLHTDDSDSCIVMCW", "length": 333, "header": "tr|A0A5G2QDM9-1|A0A5G2QTU8_PIG Computationally mapped isoform of Dystrobrevin binding protein 1 OS=Sus scrofa OX=9823 GN=DTNBP1 PE=3 SV=1 CANONICAL=A0A5G2QTU8-1" }, "locus": { "chromosome": "7", "start_pos": 11720107, "end_pos": 11600968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089435.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089435.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061736.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061736.1" } ] } }, { "isoform_ac": "A0A5G2QNK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNK7/entry", "sequence": { "sequence": "MLETLRERLLSVQQDFTSGYEDTWAALHRRAKECARAGELVDSEVVMLSAHWEKKQTSLLELQQQLQQLPGLIADLESMTANLTHLEASFEEVENHLLNLEDLCGQCELERYKHMQSQQLENYKKNKRKELETFKAELDVEHTQKVLEMEQAQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEDNTALSPVLGPDASPGLHGVRLQVPEPSRPPATPASPSSAGTDPAAPDPSEGGESPVVQSDEEGVEVDTALATLHTDDSDS", "length": 307, "header": "tr|A0A5G2QNK7-1|A0A5G2QTU8_PIG Computationally mapped isoform of Dystrobrevin binding protein 1 OS=Sus scrofa OX=9823 GN=DTNBP1 PE=3 SV=1 CANONICAL=A0A5G2QTU8-1" }, "locus": { "chromosome": "7", "start_pos": 11720107, "end_pos": 11602557, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070912.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070912.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066269.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066269.1" } ] } }, { "isoform_ac": "A0A5G2QTU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8/entry", "sequence": { "sequence": "MLETLRERLLSVQQDFTSGLKTLSDKSREVKVKNKPRIFLVYSLYFEFFFAFLRYEDTWAALHRRAKECARAGELVDSEVVMLSAHWEKKQTSLLELQQQLQQLPGLIADLESMTANLTHLEASFEEVENHLLNLEDLCGQCELERYKHMQSQQLENYKKNKRKELETFKAELDVEHTQKVLEMEQAQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEDNTALSPVLGPDASPGLHGVRLQVPEPSRPPATPASPSSAGTDPAAPDPSEGGESPVVQSDEEGVEVDTALATLHTDDSDS", "length": 342, "header": "tr|A0A5G2QTU8-1|A0A5G2QTU8_PIG Isoform 1 of Dystrobrevin binding protein 1 OS=Sus scrofa OX=9823 GN=DTNBP1 PE=3 SV=1 CANONICAL=A0A5G2QTU8-1" }, "locus": { "chromosome": "7", "start_pos": 11720107, "end_pos": 11602557, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066484.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066484.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068273.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068273.1" } ] } }, { "isoform_ac": "A0A5G2QUE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUE2/entry", "sequence": { "sequence": "MSSPGLTENSQRNPSELDVEHTQKVLEMEQAQQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPMGSMSSMEVNVDMLEQMDLMDISDQEALDVFLNSGGEDNTALSPVLGPDASPGLHGVRLQVPEPSRPPATPASPSSAGTDPAAPDPSEGGESPVVQSDEEGVEVDTALATLHTDDSDS", "length": 186, "header": "tr|A0A5G2QUE2-1|A0A5G2QUE2_PIG Computationally mapped isoform of Dystrobrevin binding protein 1 OS=Sus scrofa OX=9823 GN=DTNBP1 PE=3 SV=1 CANONICAL=A0A5G2QTU8-1" }, "locus": { "chromosome": "7", "start_pos": 11649828, "end_pos": 11602557, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087294.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087294.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068566.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 294, "start_aa": "Thr", "end_pos": 294, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr294", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "axon cytoplasm", "id": "GO:1904115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904115", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "BLOC-1 complex", "id": "GO:0031083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031083", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "platelet dense granule organization", "id": "GO:0060155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "anterograde synaptic vesicle transport", "id": "GO:0048490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048490", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle exocytosis", "id": "GO:2000300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000300", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTU8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 342, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTU8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 294 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ41-1", "uniprot_ac": "A0A5G2QZ41", "uniprot_id": "A0A5G2QZ41_PIG", "mass": { "chemical_mass": 256493.0, "monoisotopic_mass": 256493.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Calponin-homology (CH) domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ41", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ41", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004081", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004081", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21241", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21241", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047290", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047290", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14514:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25034", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25034", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QE67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7X1", "url": "https://www.uniprot.org/uniprotkb/F1S7X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7X1-1", "url": "https://www.uniprot.org/uniprotkb/F1S7X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L589", "url": "https://www.uniprot.org/uniprotkb/I3L589", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L589-1", "url": "https://www.uniprot.org/uniprotkb/I3L589-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASRTASRASRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEDIKTMEMVKNKWDHFGNNFESLSVWITEKEKELNALETSSSAMDTQSNQIKVTCSQVTFIIQCKISSITGLEEEAQSFAQFITTGESARIKAKLTQIRRYWEELREHAQCLQGTILGHLSQQQKFEENLKKIQQSVSEFEDKLAEPIKICSSATETYKVLQEHMDLCQALESLSSTVAALSASARKVSHGDSSGQEAAALQQSYEGLLCRAKERQTALEKLLAHWQRLEKELSTFLTWLERCEAIASSPEADVSADRVKVESELQLIQALQDEVVSQASIYSNLLQLKESLFSVASKDDVKVMKLHLEQLDERWRDLPQIISKRINFLQSVVAEHQQFDELLLSFSVWIKLFLSEIQTTSEINVMDHQAALTRHKDHAAEVESKRGELQSLQGHLAKLSARGCAEDLPLLQGKAEDCFQLFEEASQVVERRQLALSQLAEFLQSQASLSGVLHRLRQTVEATNSMNKKQSALLEKDLSDAIRDVKTLESTAISLDGLLTKAQYHLKGGSSEQRTSCRTIVDHLCFELERIQNLLGTKQSEADALAVLKKAFQDQKEELLQSIEDIEERTDRERLKEPTRQALQQRLRVFNQLEDELNSHEHELCWLKDKAKQIAQKDVAFAPEVDREINRLEVTWDDTKRLIHENQGQCCGLIDLMREYQNLKSAVSKVLENASNVIATRTTVKDQEDLKWVLSKHETAKNEMCNKQKELDNFTSKGKQLLSELKKIHSGDFTLVKTDMESTVDKWLDISEKIEENMDRLRMSMSIWDDILTSKDEIDGWSNNSVPQVAESISNLNNSLRAEEFLKEFEVK", "length": 2230, "header": "tr|A0A5G2QZ41-1|A0A5G2QZ41_PIG Isoform 1 of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QZ41-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QE67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE67/entry", "sequence": { "sequence": "MAASRTASRASRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKSMYRGSPIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEEYVLDKS", "length": 1433, "header": "tr|A0A5G2QE67-1|A0A5G2QZ41_PIG Computationally mapped isoform of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13906966, "end_pos": 13723381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074076.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074076.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062458.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062458.1" } ] } }, { "isoform_ac": "A0A5G2QFZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFZ1/entry", "sequence": { "sequence": "MAASRTASRASRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDEIFPGVSSFANSIQILKREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEDIKTMEMVKNKWDHFGNNFESLSVWITEKEKELNALETSSSAMDTQSNQIKVTIQEIECKISSITGLEEEAQSFAQFITTGESARIKAKLTQIRRYWEELREHAQCLQGTILGHLSQQQKFEENLKKIQQSVSEFEDKLAEPIKICSSATETYKVLQEHMDLCQALESLSSTVAALSASARKVSHGDSSGQEAAALQQSYEGLLCRAKERQTALEKLLAHWQRLEKELSTFLTWLERCEAIASSPEADVSADRVKVESELQLIQASSIKGEENEMLFVRGALEKTQL", "length": 1723, "header": "tr|A0A5G2QFZ1-1|A0A5G2QZ41_PIG Computationally mapped isoform of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13916889, "end_pos": 13723381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080474.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080474.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062696.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062696.1" } ] } }, { "isoform_ac": "A0A5G2QG28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG28/entry", "sequence": { "sequence": "MIKATFKTPGAIKDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKSMYRGSPIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEEYVLDKS", "length": 1424, "header": "tr|A0A5G2QG28-1|A0A5G2QZ41_PIG Computationally mapped isoform of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13906966, "end_pos": 13782146, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087508.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087508.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060985.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060985.2" } ] } }, { "isoform_ac": "A0A5G2QZ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41/entry", "sequence": { "sequence": "MAASRTASRASRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEDIKTMEMVKNKWDHFGNNFESLSVWITEKEKELNALETSSSAMDTQSNQIKVTCSQVTFIIQCKISSITGLEEEAQSFAQFITTGESARIKAKLTQIRRYWEELREHAQCLQGTILGHLSQQQKFEENLKKIQQSVSEFEDKLAEPIKICSSATETYKVLQEHMDLCQALESLSSTVAALSASARKVSHGDSSGQEAAALQQSYEGLLCRAKERQTALEKLLAHWQRLEKELSTFLTWLERCEAIASSPEADVSADRVKVESELQLIQALQDEVVSQASIYSNLLQLKESLFSVASKDDVKVMKLHLEQLDERWRDLPQIISKRINFLQSVVAEHQQFDELLLSFSVWIKLFLSEIQTTSEINVMDHQAALTRHKDHAAEVESKRGELQSLQGHLAKLSARGCAEDLPLLQGKAEDCFQLFEEASQVVERRQLALSQLAEFLQSQASLSGVLHRLRQTVEATNSMNKKQSALLEKDLSDAIRDVKTLESTAISLDGLLTKAQYHLKGGSSEQRTSCRTIVDHLCFELERIQNLLGTKQSEADALAVLKKAFQDQKEELLQSIEDIEERTDRERLKEPTRQALQQRLRVFNQLEDELNSHEHELCWLKDKAKQIAQKDVAFAPEVDREINRLEVTWDDTKRLIHENQGQCCGLIDLMREYQNLKSAVSKVLENASNVIATRTTVKDQEDLKWVLSKHETAKNEMCNKQKELDNFTSKGKQLLSELKKIHSGDFTLVKTDMESTVDKWLDISEKIEENMDRLRMSMSIWDDILTSKDEIDGWSNNSVPQVAESISNLNNSLRAEEFLKEFEVK", "length": 2230, "header": "tr|A0A5G2QZ41-1|A0A5G2QZ41_PIG Isoform 1 of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13931654, "end_pos": 13723381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077268.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077268.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070148.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070148.2" } ] } }, { "isoform_ac": "F1S7X1-1", "url": "https://www.uniprot.org/uniprotkb/F1S7X1/entry", "sequence": { "sequence": "MGTTRFFNLLYEARDRTFRFLTHYEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDEIFPGVSSFANSIQILKREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEDIKTMEMVKNKWDHFGNNFESLSVWITEKEKELNALETSSSAMDTQSNQIKVTIQEIECKISSITGLEEEAQSFAQFITTGESARIKAKLTQIRRYWEELREHAQCLQGTILGHLSQQQKFEENLKKIQQSVSEFEDKLAEPIKICSSATETYKVLQEHMDLCQALESLSSTVAALSASARKVSHGDSSGQEAAALQQSYEGLLCRAKERQTALEKLLAHWQRLEKELSTFLTWLERCEAIASSPEADVSADRVKVESELQLIQGCLGKNTIKNETLDPT", "length": 1717, "header": "tr|F1S7X1-1|F1S7X1_PIG Computationally mapped isoform of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=5 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13916912, "end_pos": 13802901, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004510.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004510.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004408.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004408.5" } ] } }, { "isoform_ac": "I3L589-1", "url": "https://www.uniprot.org/uniprotkb/I3L589/entry", "sequence": { "sequence": "MAASRTASRASRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSTSSVDSMVSSETASPPSKRKVATKIQGNAKRTLLKWVQCTTSKQMGIEIKDFGRSWRSGVAFHSVIHAIRPELVDLEKVKGRSNRENLEEAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKQYPDIHSTGADAQENDREDRLILKEVKVWIEQFERDLTRAQMTESNLQDKYQSFKHFRVQYEMKRKQTEHLLQPLHRDGKLSLDQALVKQSWDRVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEITIQQVHEETANTIQRKREQHKDLLQNTDAHKRAFHEIYRTRSVNGIPVPPDQLEDMAERFHFVSSTSELHLMKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRDSVELLLQNYISFIENSKFFEQYEVTYQILKQTAEMYVKADGSVEEAENVMKFMNETTAQWRNLSVEVRSVRSMLEEVIANWDRYGNTVASLQAWLEDAEKMLNQSEHAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEVVSRDLKQQLLLLNGRWRELFMEVKQYARADELDRMKKEYTDCIATLSDFATEAHRKLSEPLEVSLINVKLLIQDLEDIEQRVPVMDAQYKMITKTAHLVSKECAQEEANEMFATMSGLKEQLTKVKDCYSPLLYESQQLLIPLEELEKQMTAFYDSLGKINEILAVLEHEAQSSALFKQKHQELLACQESCKKAMVQIEKGSHGVQKSVTLSNVLKHFDQTKLQRQVADVHVAFQNMVKKTGDWKKHVETNSRLMKKFEESRAELEKVLRIAQEGLEEKGDPEDLLRRHTEFFSQLDQRVLNAFLKACDELTDILPEQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIEVEKKRFLASVEECRAELGRETKLVAQEGSEKIIKEHRIFFSDKGPHHLCEKRLQLIEELCLKLPVRDPVRNTPETCHVTLKELRAAIDSTYAKLMEDPDKWKDYTSRISEFSAWISAKETQLKGIKNEVIDTANHGEVKRAVEEIRNGVTKKGETLSWLKSRLKILTEVSSENEAQKQGDELAKLSSSFKALGTLLSEVEKMLSTFGDCVQYKEIVKSSLEELITGSKEVQEQAEKILDTENLFEAQQLLLHHQQKTKRISAKKKDVQQQIAQAREGEGGLPGRVQEELRKLESTLDSVEHSREKQERRIQVTLRKWERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTKGIAVQAENLVKEASEIPLGPKNKQLLQQQATSIKEQVKKLEDTLEEDIKTMEMVKNKWDHFGNNFESLSVWITEKEKELNALETSSSAMDTQSNQIKVTIQEIECKISSITGLEEEAQSFAQFITTGESARIKAKLTQIRRYWEELREHAQCLQGTILGHLSQQQKFEENLKKIQQSVSEFEDKLAEPIKICSSATETYKVLQEHMGHALGIWRFPGWGSNWSRRPTPQPQQL", "length": 1606, "header": "tr|I3L589-1|I3L589_PIG Computationally mapped isoform of Calponin-homology (CH) domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A5G2QZ41-1" }, "locus": { "chromosome": "1", "start_pos": 13914862, "end_pos": 13723381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030512.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030512.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019188.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019188.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "sarcomere", "id": "GO:0030017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "nuclear outer membrane", "id": "GO:0005640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005640", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" }, { "name": "meiotic nuclear membrane microtubule tethering complex", "id": "GO:0034993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034993", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nuclear migration", "id": "GO:0007097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007097", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2091, "end_pos": 2093, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2131, "end_pos": 2133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2201, "end_pos": 2203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2215, "end_pos": 2217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ41-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 2230, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ41-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ41" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ41" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 134, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 2091, "end_pos": 2093 }, { "start_pos": 2131, "end_pos": 2133 }, { "start_pos": 2201, "end_pos": 2203 }, { "start_pos": 2215, "end_pos": 2217 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 579, "end_pos": 581 }, { "start_pos": 620, "end_pos": 622 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTT7-1", "uniprot_ac": "A0A5G2QTT7", "uniprot_id": "A0A5G2QTT7_PIG", "mass": { "chemical_mass": 113688.0, "monoisotopic_mass": 113688.0 }, "refseq": {}, "gene_names": [ { "name": "NCOA6", "type": "recommended", "evidence": [ { "id": "A0A5G2QTT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7" } ] } ], "protein_names": [ { "name": "Nuclear receptor coactivator 6", "type": "synonym", "evidence": [ { "id": "A0A5G2QTT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCOA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTT7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTT7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007284", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007284", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15690:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15690:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QHQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLDDLPNLEDIYTSLCSSTVEDSEMDFDSGLEDDDSKSDSILEDSTIFVAFKGNIDDKDFKWKLDTILENVPSLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALAQNRSQDVRMNGPMGAGNSVRMEAGFPMAGGPGLIRMTNPATVMIPQGGNMSSSMMAPGPNSDLQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLAPPHHPMQPVPVNRQINPANFPQLQQQQQQQQQQQQLQARPPQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTGNQGWKKAPLPGPMQQQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFSQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQAPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGGQGAGPPQNQMQVSHGPPNMMQSSLMGIHGNMNNQQAGSSGVPQVNLGNMQGQPQQGPASQLMSMHQQIVPSQSQMVQQQGTLNPQNPMILSRAQLMPQGQMMVNPQSQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSSVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHGDPATTANNDVTLSQMMPDVSMQQTNMVPPHVQAMQGNSASGNHFSGHGMPFSAPFSGAPNGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKPKKKKPPRKKKNSQQDLNTSDTRPAGLEEADQQSLPGEQGINLDNSGPKLPEFSNRPPAPSQNLIPKETPATALQGSVARPELEVNATMVSGQSSEPKEIIEKSKTPSRRNSRTEEPTVASESVENGHRKRSSRPASASSSTKDITSVVQSKRRKSK", "length": 1057, "header": "tr|A0A5G2QTT7-1|A0A5G2QTT7_PIG Isoform 1 of Nuclear receptor coactivator 6 OS=Sus scrofa OX=9823 GN=NCOA6 PE=4 SV=1 CANONICAL=A0A5G2QTT7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ9/entry", "sequence": { "sequence": "MVLDDLPNLEDIYTSLCSSTVEDSEMDFDSGLEDDDSKSDSILEDSTIFVAFKGNIDDKDFKWKLDTILENVPSLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALAQNRSQDVRMNGPMGAGNSVRMEAGFPMAGGPGLIRMTNPATVMIPQGGNMSSSMMAPGPNSDLQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLAPPHHPMQPVPVNRQINPANFPQLQQQQQQQQQQQQLQARPPQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTGNQGWKKAPLPGPMQQQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFSQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQAPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGGQGAGPPQNQMQVSHGPPNMMQSSLMGIHGNMNNQQAGSSGVPQVNLGNMQGQPQQGPASQLMSMHQQIVPSQSQMVQQQGTLNPQNPMILSRAQLMPQGQMMVNPQSQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSSVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHGDPATTANNDVTLSQMMPDVSMQQTNMVPPHVQAMQGNSASGNHFSGHGMPFSAPFSGAPNGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKPKKKKPPRKKKNSQQDLNTSDTRPAGLEEADQQSLPGEQGINLDNSGPKLPEFSNRPPAKMF", "length": 962, "header": "tr|A0A5G2QHQ9-1|A0A5G2QTT7_PIG Computationally mapped isoform of Nuclear receptor coactivator 6 OS=Sus scrofa OX=9823 GN=NCOA6 PE=4 SV=1 CANONICAL=A0A5G2QTT7-1" }, "locus": { "chromosome": "17", "start_pos": 38167436, "end_pos": 38130941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067201.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067201.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063919.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063919.1" } ] } }, { "isoform_ac": "A0A5G2QTT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7/entry", "sequence": { "sequence": "MVLDDLPNLEDIYTSLCSSTVEDSEMDFDSGLEDDDSKSDSILEDSTIFVAFKGNIDDKDFKWKLDTILENVPSLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALAQNRSQDVRMNGPMGAGNSVRMEAGFPMAGGPGLIRMTNPATVMIPQGGNMSSSMMAPGPNSDLQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLAPPHHPMQPVPVNRQINPANFPQLQQQQQQQQQQQQLQARPPQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTGNQGWKKAPLPGPMQQQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFSQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQAPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQHAGGQGAGPPQNQMQVSHGPPNMMQSSLMGIHGNMNNQQAGSSGVPQVNLGNMQGQPQQGPASQLMSMHQQIVPSQSQMVQQQGTLNPQNPMILSRAQLMPQGQMMVNPQSQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKQQFNTQNQSSVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHGDPATTANNDVTLSQMMPDVSMQQTNMVPPHVQAMQGNSASGNHFSGHGMPFSAPFSGAPNGNQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNNKQNNTNANKPKKKKPPRKKKNSQQDLNTSDTRPAGLEEADQQSLPGEQGINLDNSGPKLPEFSNRPPAPSQNLIPKETPATALQGSVARPELEVNATMVSGQSSEPKEIIEKSKTPSRRNSRTEEPTVASESVENGHRKRSSRPASASSSTKDITSVVQSKRRKSK", "length": 1057, "header": "tr|A0A5G2QTT7-1|A0A5G2QTT7_PIG Isoform 1 of Nuclear receptor coactivator 6 OS=Sus scrofa OX=9823 GN=NCOA6 PE=4 SV=1 CANONICAL=A0A5G2QTT7-1" }, "locus": { "chromosome": "17", "start_pos": 38167436, "end_pos": 38114808, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080685.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080685.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068351.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068351.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTT7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 894, "end_pos": 896, "annotation": "n_glycosylation_sequon" }, { "start_pos": 918, "end_pos": 920, "annotation": "n_glycosylation_sequon" }, { "start_pos": 986, "end_pos": 988, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTT7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1057, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTT7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTT7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTT7" }, { "id": "PF13820", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13820" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nuclear receptor coactivator 6 TRADD-N", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 190, "start_aa": "Thr", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 189, "end_pos": 191 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 719, "end_pos": 721 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 894, "end_pos": 896 }, { "start_pos": 918, "end_pos": 920 }, { "start_pos": 986, "end_pos": 988 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYJ2-1", "uniprot_ac": "A0A5G2QYJ2", "uniprot_id": "A0A5G2QYJ2_PIG", "mass": { "chemical_mass": 47160.0, "monoisotopic_mass": 47160.0 }, "refseq": {}, "gene_names": [ { "name": "TBC1D16", "type": "recommended", "evidence": [ { "id": "A0A5G2QYJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 16", "type": "synonym", "evidence": [ { "id": "A0A5G2QYJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYJ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017159", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017159", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF547", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF547", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QK04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QK04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RTVADEKTCMQFSIRRPKLPSSETHPEESLYRRLDVAAWLRHLNALGQVEEEYKLRQAIFFGGIDVSIRGEVWPFLLRYYSHESTSEEREALRVQKRKEYAEIQQKRLSMTPEEHRAFWRNVQFTVDKDVVRTDRSNQFFRGEGNPNVESMRRILLNYAVYNPAIGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFVSSPRDEDMEKQLLYLRELLRLTHPRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWAHYQTDYFHLFICVAIVAIYGDDVIEQQLATDQMLLHFGNLAMHMNGELVLRKARSLLYQFRLLPRIPCSLHDLCKLCGSGMWDSGYMPAVECTGQHPGSESCPYGGTAETPSPKPPREGRKGPKTPREGFGFRR", "length": 405, "header": "tr|A0A5G2QYJ2-1|A0A5G2QYJ2_PIG Isoform 1 of TBC1 domain family member 16 OS=Sus scrofa OX=9823 GN=TBC1D16 PE=4 SV=1 CANONICAL=A0A5G2QYJ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QK04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK04/entry", "sequence": { "sequence": "RTQVADEKTCMQFSIRRPKLPSSETHPEESLYRRLDVAAWLRHLNALGQVEEEYKLRQAIFFGGIDVSIRGEVWPFLLRYYSHESTSEEREALRVQKRKEYAEIQQKRLSMTPEEHRAFWRNVQFTVDKDVVRTDRSNQFFRGEGNPNVESMRRILLNYAVYNPAIGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFVSSPRDEDMEKQLLYLRELLRLTHPRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWAHYQGHYA", "length": 279, "header": "tr|A0A5G2QK04-1|A0A5G2QYJ2_PIG Computationally mapped isoform of TBC1 domain family member 16 OS=Sus scrofa OX=9823 GN=TBC1D16 PE=4 SV=1 CANONICAL=A0A5G2QYJ2-1" }, "locus": { "chromosome": "12", "start_pos": 2452752, "end_pos": 2447307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074157.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074157.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064303.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064303.1" } ] } }, { "isoform_ac": "A0A5G2QYJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2/entry", "sequence": { "sequence": "RTVADEKTCMQFSIRRPKLPSSETHPEESLYRRLDVAAWLRHLNALGQVEEEYKLRQAIFFGGIDVSIRGEVWPFLLRYYSHESTSEEREALRVQKRKEYAEIQQKRLSMTPEEHRAFWRNVQFTVDKDVVRTDRSNQFFRGEGNPNVESMRRILLNYAVYNPAIGYSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFVSSPRDEDMEKQLLYLRELLRLTHPRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWAHYQTDYFHLFICVAIVAIYGDDVIEQQLATDQMLLHFGNLAMHMNGELVLRKARSLLYQFRLLPRIPCSLHDLCKLCGSGMWDSGYMPAVECTGQHPGSESCPYGGTAETPSPKPPREGRKGPKTPREGFGFRR", "length": 405, "header": "tr|A0A5G2QYJ2-1|A0A5G2QYJ2_PIG Isoform 1 of TBC1 domain family member 16 OS=Sus scrofa OX=9823 GN=TBC1D16 PE=4 SV=1 CANONICAL=A0A5G2QYJ2-1" }, "locus": { "chromosome": "12", "start_pos": 2455834, "end_pos": 2447307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071498.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071498.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069213.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069213.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYJ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 405, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYJ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYJ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ2" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 273, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYQ8-1", "uniprot_ac": "A0A5G2QYQ8", "uniprot_id": "A0A5G2QYQ8_PIG", "mass": { "chemical_mass": 18886.0, "monoisotopic_mass": 18886.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "PTHR31294", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31294", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31294:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31294:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QL99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ACCSDHKRGTGVRVPRGTGGPGPGLRVGPGSGFREGPGSGFREGPGSGFREGPGSGFRVGPGSGFRVGPGSGFREGPGSGFREGPGPGLRVGPGSGFREGPGSGFREGPGSGFREGPGSGFRVGPASGFRVGPGSGFRVGPGSGFRVGPGSGFREGPGPGAPSEGGVGRRPGRPPARPPAWGCNTPSGRSRSCS", "length": 194, "header": "tr|A0A5G2QYQ8-1|A0A5G2QYQ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYQ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL99/entry", "sequence": { "sequence": "ACCSDHKGPGSGFREGPGSGFRVGPGSGFREGPGSGLRVGPGSGFRVGPGSGFRVGPGSGVGPGSGFREGPGPGLRVGPGSGFREGPGSGFREGPGSGFREGPGSGFRVGPGSGFRVGPGSGAWLCCGHWAASELNGIRCREP", "length": 143, "header": "tr|A0A5G2QL99-1|A0A5G2QYQ8_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYQ8-1" }, "locus": { "chromosome": "4", "start_pos": 1631961, "end_pos": 1629425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067183.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067183.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064800.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064800.1" } ] } }, { "isoform_ac": "A0A5G2QVX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVX5/entry", "sequence": { "sequence": "ACWFKVGPGSGFRMGPGSGLRVGPGPGLRVGPGSGFREGPGSGFREGPGSGFRVGPGSGFRMGPGSGFREGPGSGFRMGPGSGLRVGPGSGFREGPGPGLRVGEGPGSGFRVGPGSGFREGPGSGGPRAWLCCGHWAASELNGIRCREP", "length": 149, "header": "tr|A0A5G2QVX5-1|A0A5G2QVX5_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYQ8-1" }, "locus": { "chromosome": "4", "start_pos": 1631961, "end_pos": 1629425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091106.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091106.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069021.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069021.1" } ] } }, { "isoform_ac": "A0A5G2QW12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW12/entry", "sequence": { "sequence": "QRPRMGPGSGLRVGPGPGLRVGPGSGFREGPGSGFREGPGSGFRVGPGSGFRMGPGSGFREGPGSGFRMGPGSGLRVGPGSGFREGPGPGLRVGPGPGLRVGPGSGFREGPGSGFREGPGSGVGPASGFRVGPGSGFRVGPGSGAGGVRGPRAWLCCGHWAASELNGIRCREP", "length": 173, "header": "tr|A0A5G2QW12-1|A0A5G2QW12_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYQ8-1" }, "locus": { "chromosome": "4", "start_pos": 1631961, "end_pos": 1629564, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085638.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085638.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066113.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066113.1" } ] } }, { "isoform_ac": "A0A5G2QYQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8/entry", "sequence": { "sequence": "ACCSDHKRGTGVRVPRGTGGPGPGLRVGPGSGFREGPGSGFREGPGSGFREGPGSGFRVGPGSGFRVGPGSGFREGPGSGFREGPGPGLRVGPGSGFREGPGSGFREGPGSGFREGPGSGFRVGPASGFRVGPGSGFRVGPGSGFRVGPGSGFREGPGPGAPSEGGVGRRPGRPPARPPAWGCNTPSGRSRSCS", "length": 194, "header": "tr|A0A5G2QYQ8-1|A0A5G2QYQ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYQ8-1" }, "locus": { "chromosome": "4", "start_pos": 1631008, "end_pos": 1629425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090890.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090890.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067077.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067077.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hair follicle development", "id": "GO:0001942", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001942", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYQ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYQ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 194, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYQ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYQ8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWB6-1", "uniprot_ac": "A0A5G2QWB6", "uniprot_id": "A0A5G2QWB6_PIG", "mass": { "chemical_mass": 100856.0, "monoisotopic_mass": 100856.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Filaggrin", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWB6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB6", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR003303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22571", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22571", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22571:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22571:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QN38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VCLLYTYTIHNHMTDPSGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSRHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGQHGSLHGQSGDTHRPAGSSHAESGSGTRQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSRHGQSGDSRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSLHGQSGDSARHAETRPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHISTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGHVRDSHGVFLGARKQLVPIPERSYSLFDNHNHGLTQGLRHGSYGSADYDYGQSGYGHF", "length": 979, "header": "tr|A0A5G2QWB6-1|A0A5G2QWB6_PIG Isoform 1 of Filaggrin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWB6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN38/entry", "sequence": { "sequence": "MVFKLAQAYYAYTRRQNFQKSGRKQKYRHYNGDEEGDTEEEDREEKNRKGPHGSRHGQTGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHISTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGPHGSRHGQSGDRSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSRHGQSGDSARKQLVPIPERSYSLFDNHNHGLTQGLRHGSYGSADYDYGQSGYGHF", "length": 302, "header": "tr|A0A5G2QN38-1|A0A5G2QWB6_PIG Computationally mapped isoform of Filaggrin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWB6-1" }, "locus": { "chromosome": "4", "start_pos": 97044362, "end_pos": 97036442, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080958.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080958.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063523.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063523.1" } ] } }, { "isoform_ac": "A0A5G2QWB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6/entry", "sequence": { "sequence": "VCLLYTYTIHNHMTDPSGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSRHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGQHGSLHGQSGDTHRPAGSSHAESGSGTRQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSRHGQSGDSRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSLHGQSGDSARHAETRPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGVRGQHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHISTESGSGRHREPSLGQASDSEGLSDHSGRHAPTAQATAGSGARGPHGSLHGQSGDSARHAEARPSRAEAHRPAGSSHAESGSGTPQRQGRGHEQARDSSRHSRAAQGHSSTESGSGRHREPSLGHVRDSHGVFLGARKQLVPIPERSYSLFDNHNHGLTQGLRHGSYGSADYDYGQSGYGHF", "length": 979, "header": "tr|A0A5G2QWB6-1|A0A5G2QWB6_PIG Isoform 1 of Filaggrin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWB6-1" }, "locus": { "chromosome": "4", "start_pos": 97044362, "end_pos": 97035894, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071173.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071173.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069244.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069244.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWB6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 979, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWB6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXG4-1", "uniprot_ac": "A0A5G2QXG4", "uniprot_id": "A0A5G2QXG4_PIG", "mass": { "chemical_mass": 54749.0, "monoisotopic_mass": 54749.0 }, "refseq": {}, "gene_names": [ { "name": "ARSA", "type": "recommended", "evidence": [ { "id": "A0A5G2QXG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ] } ], "protein_names": [ { "name": "Arylsulfatase A", "type": "recommended", "evidence": [ { "id": "A0A5G2QXG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4/entry#names_and_taxonomy" } ] }, { "name": "3.1.6.8", "type": "synonym", "evidence": [ { "id": "A0A5G2QXG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4/entry#names_and_taxonomy" } ] }, { "name": "Cerebroside-sulfatase", "type": "synonym", "evidence": [ { "id": "A0A5G2QXG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Hydrolyzes cerebroside sulfate.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4#function" }, { "database": "UniProtKB", "id": "ARBA00058866", "url": "https://www.uniprot.org/uniprotkb/ARBA00058866#function" }, { "database": "UniProtKB", "id": "A0A286ZTA6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTA6#function" }, { "database": "UniProtKB", "id": "A0A5G2QNM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARSA", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4", "locus": { "chromosome": "5", "start_pos": 111518, "end_pos": 107149, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032428", "url": "https://www.ensembl.org/id/ENSSSCG00000032428" } ] } } ], "crossref": [ { "id": "A0A5G2QXG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032428", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032428", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42693:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42693:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1663150", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1663150", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "21300", "url": "https://www.rhea-db.org/rhea/21300", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZTA6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVALWALTLALASGLAATSPPNIVLIFADDLGYGDLGSYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSRAALLTGRLPVRMGLYPGVLEPSSRGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPSTPCDGSCDQGLVPVPLLANLSVEAQPPWLPGLEARYVAFARDLMADAQRQGRPFFLYYASHHTHYPQFSGQSFSGHSGRGPFGDSLMELDAAVGALMTAVGDLGLLGETLVIFTADNGPETMRMSHGGCSGLLRCGKGTTFEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGVDLSPLLLGTGKSPRRTLFFYPAYPDEVRGVFAVRSGKYKAHFFTQGSIHSDTTADPACHASSPLTAHEPPLLFDLSEDPGENYNLLGGVAEVAPEVLQVLKQLQLLKAQFDAAVTFSPSQIARGEDPALQICCQPSCTPRPSCGPLSSPSPQHVMVYRCAVSG", "length": 519, "header": "tr|A0A5G2QXG4-1|A0A5G2QXG4_PIG Isoform 1 of Arylsulfatase A OS=Sus scrofa OX=9823 GN=ARSA PE=1 SV=2 CANONICAL=A0A5G2QXG4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTA6/entry", "sequence": { "sequence": "MVALWALTLALASGLAATSPPNIVLIFADDLGYGDLGSYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSRAALLTGRLPVRMGLYPGVLEPSSRGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPSTPCDGSCDQGLVPVPLLANLSVEAQPPWLPGLEARYVAFARDLMADAQRQGRPFFLYYASHHTHYPQFSGQSFSGHSGRGPFGDSLMELDAAVGALMTAVGDLGLLGETLVIFTADNGPETMRMSHGGCSGLLRCGKGTTFEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGVDLSPLLLGTGKSPRRTLFFYPAYPDEVRGVFAVRSGKYKAHFFTQGSIHSDTTADPACHASSPLTAHEPPLLFDLSEDPGENYNLLGGVAEVAPEVLQVLKQLQLLKAQFDAAVTFSPSQIARACDGLSLCCEWMKVARECQ", "length": 498, "header": "tr|A0A286ZTA6-1|A0A286ZTA6_PIG Computationally mapped isoform of Arylsulfatase A OS=Sus scrofa OX=9823 GN=ARSA PE=1 SV=2 CANONICAL=A0A5G2QXG4-1" }, "locus": { "chromosome": "5", "start_pos": 110314, "end_pos": 107658, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048812.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048812.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034698.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034698.2" } ] } }, { "isoform_ac": "A0A5G2QNM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM2/entry", "sequence": { "sequence": "MVALWALTLALASGLAATSPPNIVLIFADDLGYGDLGSYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSRAALLTGRLPVRMGLYPGVLEPSSRGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPSTPCDGSCDQGLVPVPLLANLSVEAQPPWLPGLEARYVAFARDLMADAQRQGRPFFLYYASHHTHYPQFSGQSFSGHSGRGPFGDSLMELDAAVGALMTAVGDLGLLGETLVIFTADNGPETMRMSHGGCSGLLRCGKGTTFEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGVDLSPLLLGTGKSPRRTLFFYPAYPDEVRGVFAVRSGKYKAHFFTQGSIHSDTTADPACHASSPLTAHEPPLLFDLSEDPGGSTRTAAPWLLPETCLKLSSPRSGDLWHHWP", "length": 467, "header": "tr|A0A5G2QNM2-1|A0A5G2QXG4_PIG Computationally mapped isoform of Arylsulfatase A OS=Sus scrofa OX=9823 GN=ARSA PE=1 SV=1 CANONICAL=A0A5G2QXG4-1" }, "locus": { "chromosome": "5", "start_pos": 111428, "end_pos": 107658, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088625.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088625.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066493.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066493.1" } ] } }, { "isoform_ac": "A0A5G2QXG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4/entry", "sequence": { "sequence": "MVALWALTLALASGLAATSPPNIVLIFADDLGYGDLGSYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLCTPSRAALLTGRLPVRMGLYPGVLEPSSRGGLPLEEVTLAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPSTPCDGSCDQGLVPVPLLANLSVEAQPPWLPGLEARYVAFARDLMADAQRQGRPFFLYYASHHTHYPQFSGQSFSGHSGRGPFGDSLMELDAAVGALMTAVGDLGLLGETLVIFTADNGPETMRMSHGGCSGLLRCGKGTTFEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGVDLSPLLLGTGKSPRRTLFFYPAYPDEVRGVFAVRSGKYKAHFFTQGSIHSDTTADPACHASSPLTAHEPPLLFDLSEDPGENYNLLGGVAEVAPEVLQVLKQLQLLKAQFDAAVTFSPSQIARGEDPALQICCQPSCTPRPSCGPLSSPSPQHVMVYRCAVSG", "length": 519, "header": "tr|A0A5G2QXG4-1|A0A5G2QXG4_PIG Isoform 1 of Arylsulfatase A OS=Sus scrofa OX=9823 GN=ARSA PE=1 SV=2 CANONICAL=A0A5G2QXG4-1" }, "locus": { "chromosome": "5", "start_pos": 110291, "end_pos": 107658, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082797.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082797.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069615.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069615.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1663150", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1663150", "resource": "Reactome", "description": "The activation of arylsulfatases" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" }, { "name": "cerebroside-sulfatase activity", "id": "GO:0004098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004098", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" }, { "name": "arylsulfatase activity", "id": "GO:0004065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004065", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21300", "name": "", "equation": "an N-acyl-1-beta-D-(3-O-sulfo)-galactosyl-sphing-4-enine + H2O = a beta-D-galactosyl-(1<->1')-N-acylsphing-4-enine + sulfate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21300", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21300" } ] }, { "id": "R-SSC-1606807", "name": "ARSA removes sulfate from PSAP(195-273):Sulfatide", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [ "R-ALL-1606573", "R-ALL-1606845" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1606807", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1606807" } ] }, { "id": "R-SSC-1614362", "name": "SUMF1 mediates the oxidation of cysteine to formylglycine, producing active arylsulfatases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen", "input_participant_list": [ "R-ALL-194653" ], "output_participant_list": [ "R-ALL-1663154" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1614362", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614362" } ] }, { "id": "R-SSC-2248891", "name": "M6PR transports activated ARSA to the lysosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen, lysosomal lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2248891", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2248891" } ] }, { "id": "R-SSC-6798751", "name": "Exocytosis of azurophil granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, azurophil granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798751", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798751" } ] }, { "id": "R-SSC-9840949", "name": "ARSA removes sulfate from SM3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [ "R-ALL-9840879" ], "output_participant_list": [ "R-ALL-1605601" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9840949", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840949" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1605601", "participant_name": "LacCer [lysosomal lumen]", "crossref": [ { "id": "195546", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1606573", "participant_name": "GalCer [lysosomal lumen]", "crossref": [ { "id": "36498", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1606845", "participant_name": "SO4(2-) [lysosomal lumen]", "crossref": [ { "id": "8144977", "database": "PubChem Substance", "url": "" }, { "id": "C00059", "database": "COMPOUND", "url": "" }, { "id": "16189", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1663154", "participant_name": "H2S [endoplasmic reticulum lumen]", "crossref": [ { "id": "29919", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-194653", "participant_name": "NAD+ [endoplasmic reticulum lumen]", "crossref": [ { "id": "57540", "database": "ChEBI", "url": "" }, { "id": "ZINC000008214766", "database": "ZINC", "url": "" }, { "id": "C00003", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-9840879", "participant_name": "SM3 [lysosomal lumen]", "crossref": [ { "id": "90163", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXG4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 519, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXG4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXG4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG4" }, { "id": "PF00884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfatase N-terminal", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 346, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 184, "end_pos": 186 }, { "start_pos": 350, "end_pos": 352 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUU5-1", "uniprot_ac": "A0A5G2QUU5", "uniprot_id": "A0A5G2QUU5_PIG", "mass": { "chemical_mass": 87532.0, "monoisotopic_mass": 87532.0 }, "refseq": {}, "gene_names": [ { "name": "GOLGA1", "type": "recommended", "evidence": [ { "id": "A0A5G2QUU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ] } ], "protein_names": [ { "name": "Golgin subfamily A member 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QUU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5/entry#names_and_taxonomy" } ] }, { "name": "Golgin-97", "type": "synonym", "evidence": [ { "id": "A0A5G2QUU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in vesicular trafficking at the Golgi apparatus level. Involved in endosome-to-Golgi trafficking. Mechanistically, captures transport vesicles arriving from endosomes via the protein TBC1D23. Recognized vesicles are then tethered to the trans-Golgi before subsequent SNARE engagement and vesicle fusion. Selectively regulates E-cadherin transport from the trans-Golgi network in tubulovesicular carriers.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ05#function" }, { "database": "UniProtKB", "id": "ARBA00093371", "url": "https://www.uniprot.org/uniprotkb/ARBA00093371#function" }, { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GOLGA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5", "locus": { "chromosome": "1", "start_pos": 265652128, "end_pos": 265705895, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005597", "url": "https://www.ensembl.org/id/ENSSSCG00000005597" } ] } } ], "crossref": [ { "id": "A0A5G2QUU5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005597", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005597", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23157:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23157:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQ05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFAKLKKKIAEETAVAQRPGGAARIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQLLRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKMAEGLALALARKDQEWSEKVDQLEKDKRFLTAQLQEIKNQSLNLFQRRDEMDELEGFQQQELSKVKHMLLKKEESLGKMEQELEAQVRELSRTQEELMTSNQLSSDLSQKLEELQRHYSTLEEQRDHMTASKTGAENKITALEQKEQELQAFIQQLSLDLQKVTAETQEKEQLITHLQEKVASLEKKLEQNLSGEEHVQELLKEKTLAEQNLEDTRQQLLAARSSQAKAIANLETQVKELEQSLQVSEKKLKQSSDIVAAQAAQIQELAATNKESSRAQQQALALEQQRTERILALEAQLAALERAQAADQTASEQEVRQLEQENAALQESKHEFECSLQHHQLELKKLKEEWSQREIVSVAMAQALEEVRKQREEFQQQAADLTAIIGEKEQSLQEKTEVILQKEQEILQLKKGHDAALLQTHQLQSELEALRGLRAAEPEAAAEREDLLRLPGQEPGQVLLVSEPHVTLRAGQDSEYQLPAAEGIPNGEMGAMDLGQLQKEKQDLEQQLLEKNKTIKQMQQRMLELKKTLQKELKIRPDNELFDVREKPGPEMPNMAPCVTNNADLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAVSVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISSPRIPWS", "length": 767, "header": "tr|A0A5G2QUU5-1|A0A5G2QUU5_PIG Isoform 1 of Golgin subfamily A member 1 OS=Sus scrofa OX=9823 GN=GOLGA1 PE=1 SV=1 CANONICAL=A0A5G2QUU5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ05/entry", "sequence": { "sequence": "MFAKLKKKIAEETAVAQRPGGAARIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQLLRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKMAEGLALALARKDQLSELISSSTQDKRFLTAQLQEIKNQSLNLFQRRDEMDELEGFQQQELSKVKHMLLKKEESLGKMEQELEAQVRELSRTQEELMTSNQLSSDLSQKLEELQRHYSTLEEQRDHMTASKTGAENKITALEQKEQELQAFIQQLSLDLQKVTAETQEKEQLITHLQEKVASLEKKLEQNLSGEEHVQELLKEKTLAEQNLEDTRQQLLAARSSQAKAIANLETQVKELEQSLQVSEKKLKQSSDIVAAQAAQIQELAATNKESSRAQQQALALEQQRTERILALEAQLAALERAQAADQTASEQEVRQLEQENAALQESKHEFECSLQHHQLELKKLKEEWSQREIVSVAMAQALEEVRKQREEFQQQAADLTAIIGEKEQSLQEKTEVILQKEQEILQLKKGHDAALLQTHQLQSELEALRGLRAAEPEAAAEREDLLRLPGQEPGQVLLVSEPHVTLRAGQDSEYQLPAAEGIPNGEMGAMDLGQLQKEKQDLEQQLLEKNKVRIIFPLVFQKIRPDNELFDVREKPGPEMPNMAPCVTNNADLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAVSVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISSPRIPWS", "length": 756, "header": "tr|A0A5G2QQ05-1|A0A5G2QUU5_PIG Computationally mapped isoform of Golgin subfamily A member 1 OS=Sus scrofa OX=9823 GN=GOLGA1 PE=1 SV=2 CANONICAL=A0A5G2QUU5-1" }, "locus": { "chromosome": "1", "start_pos": 265703872, "end_pos": 265657346, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068227.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068227.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064149.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064149.2" } ] } }, { "isoform_ac": "A0A5G2QUU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5/entry", "sequence": { "sequence": "MFAKLKKKIAEETAVAQRPGGAARIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQLLRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKMAEGLALALARKDQEWSEKVDQLEKDKRFLTAQLQEIKNQSLNLFQRRDEMDELEGFQQQELSKVKHMLLKKEESLGKMEQELEAQVRELSRTQEELMTSNQLSSDLSQKLEELQRHYSTLEEQRDHMTASKTGAENKITALEQKEQELQAFIQQLSLDLQKVTAETQEKEQLITHLQEKVASLEKKLEQNLSGEEHVQELLKEKTLAEQNLEDTRQQLLAARSSQAKAIANLETQVKELEQSLQVSEKKLKQSSDIVAAQAAQIQELAATNKESSRAQQQALALEQQRTERILALEAQLAALERAQAADQTASEQEVRQLEQENAALQESKHEFECSLQHHQLELKKLKEEWSQREIVSVAMAQALEEVRKQREEFQQQAADLTAIIGEKEQSLQEKTEVILQKEQEILQLKKGHDAALLQTHQLQSELEALRGLRAAEPEAAAEREDLLRLPGQEPGQVLLVSEPHVTLRAGQDSEYQLPAAEGIPNGEMGAMDLGQLQKEKQDLEQQLLEKNKTIKQMQQRMLELKKTLQKELKIRPDNELFDVREKPGPEMPNMAPCVTNNADLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAVSVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISSPRIPWS", "length": 767, "header": "tr|A0A5G2QUU5-1|A0A5G2QUU5_PIG Isoform 1 of Golgin subfamily A member 1 OS=Sus scrofa OX=9823 GN=GOLGA1 PE=1 SV=1 CANONICAL=A0A5G2QUU5-1" }, "locus": { "chromosome": "1", "start_pos": 265703872, "end_pos": 265657346, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069462.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069462.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067914.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067914.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transepithelial transport", "id": "GO:0070633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070633", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "molecular carrier activity", "id": "GO:0140104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140104", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" }, { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUU5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 767, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUU5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUU5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUU5" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 688, "end_pos": 737, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 158, "end_pos": 160 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 634, "end_pos": 636 }, { "start_pos": 725, "end_pos": 727 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXM7-1", "uniprot_ac": "A0A5G2QXM7", "uniprot_id": "A0A5G2QXM7_PIG", "mass": { "chemical_mass": 23563.0, "monoisotopic_mass": 23563.0 }, "refseq": { "ac": "XP_005667153", "name": "ras-related protein Rab-6A isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667153" }, "gene_names": [ { "name": "RAB6A", "type": "recommended", "evidence": [ { "id": "A0A5G2QXM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ] }, { "name": "RAB6A", "type": "synonym", "evidence": [ { "id": "XP_005667153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667153" } ] } ], "protein_names": [ { "name": "RAB6A, member RAS oncogene family", "type": "synonym", "evidence": [ { "id": "A0A5G2QXM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7/entry#names_and_taxonomy" } ] }, { "name": "ras-related protein Rab-6A isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005667153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667153" } ] } ], "function": [ { "annotation": "The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between active GTP-bound and inactive GDP-bound states. In their active state, drive transport of vesicular carriers from donor organelles to acceptor organelles to regulate the membrane traffic that maintains organelle identity and morphology. Recruits VPS13B to the Golgi membrane. Regulates the compacted morphology of the Golgi. Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells. Plays a role in neuron projection development.", "evidence": [ { "database": "UniProtKB", "id": "F1SUT0", "url": "https://www.uniprot.org/uniprotkb/F1SUT0#function" }, { "database": "UniProtKB", "id": "ARBA00055612", "url": "https://www.uniprot.org/uniprotkb/ARBA00055612#function" }, { "database": "UniProtKB", "id": "A0A287BI63", "url": "https://www.uniprot.org/uniprotkb/A0A287BI63#function" }, { "database": "UniProtKB", "id": "A0A5G2QQ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ57#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB6A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7", "locus": { "chromosome": "9", "start_pos": 8137672, "end_pos": 8199079, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014828", "url": "https://www.ensembl.org/id/ENSSSCG00000014828" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014828", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014828", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01861", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01861", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625022", "url": "https://www.ncbi.nlm.nih.gov/gene/100625022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PVSNDGC", "url": "https://omabrowser.org/oma/group/PVSNDGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXM7", "url": "https://www.orthodb.org/?gene=A0A5G2QXM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08477", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08477", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667153", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667153", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AMK7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI63", "url": "https://www.uniprot.org/uniprotkb/A0A287BI63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5B9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5B9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUT0", "url": "https://www.uniprot.org/uniprotkb/F1SUT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 208, "header": "tr|A0A5G2QXM7-1|A0A5G2QXM7_PIG Isoform 1 of RAB6A, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=2 CANONICAL=A0A5G2QXM7-1" }, "isoforms": [ { "isoform_ac": "A0A287AMK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMK7/entry", "sequence": { "sequence": "MEWWGSEGGAAAVAIFTRWARLRLVGKPRFLLLTFILDDPFGRVDAFPVSARILLRSYKLMRLLKSCLCVGKTSLITRFMYDSFDNTYQVFYPFIHIQSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 230, "header": "tr|A0A287AMK7-1|A0A287AMK7_PIG Computationally mapped isoform of RAB6A, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=3 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8197918, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048524.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048524.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045144.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045144.3" } ] } }, { "isoform_ac": "A0A287BI63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI63/entry", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSGEILLRSYKLMRLLKSCLCVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 227, "header": "tr|A0A287BI63-1|A0A287BI63_PIG Computationally mapped isoform of Ras-related protein Rab-6B OS=Sus scrofa OX=9823 GN=RAB6A PE=3 SV=3 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8198588, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051695.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051695.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055830.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055830.3" } ] } }, { "isoform_ac": "A0A5G2QQ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ57/entry", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSGEILLRSYKLMRLLKSCLCVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 227, "header": "tr|A0A5G2QQ57-1|A0A5G2QXM7_PIG Computationally mapped isoform of RAB6A, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=2 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8198588, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082059.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082059.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066857.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066857.2" } ] } }, { "isoform_ac": "A0A5G2QXM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7/entry", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 208, "header": "tr|A0A5G2QXM7-1|A0A5G2QXM7_PIG Isoform 1 of RAB6A, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=2 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8198588, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079270.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079270.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068895.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068895.2" } ] } }, { "isoform_ac": "A0A5G2R5B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5B9/entry", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 104, "header": "tr|A0A5G2R5B9-1|A0A5G2R5B9_PIG Computationally mapped isoform of RAB6A, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=1 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8198588, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093997.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093997.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075795.1" } ] } }, { "isoform_ac": "F1SUT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUT0/entry", "sequence": { "sequence": "MLFQSLPVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 192, "header": "tr|F1SUT0-1|F1SUT0_PIG Computationally mapped isoform of Ras-related protein Rab-6B OS=Sus scrofa OX=9823 GN=RAB6A PE=1 SV=3 CANONICAL=A0A5G2QXM7-1" }, "locus": { "chromosome": "9", "start_pos": 8197785, "end_pos": 8139917, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016180.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016180.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015747.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015747.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MBS7-1", "protein_name": "RAB6A, member RAS onco family", "gene_name": "RAB6A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 208 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XGK7-1", "protein_name": "RAB6A, member RAS onco family", "gene_name": "RAB6A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQVNESLFVFSKASSLQIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPQEQPVSEGGCSC", "length": 205 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P20340-1", "protein_name": "Ras-related protein Rab-6A", "gene_name": "RAB6A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC", "length": 208 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P35279-1", "protein_name": "Ras-related protein Rab-6A", "gene_name": "Rab6a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNEGGCSC", "length": 208 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q55FK2-1", "protein_name": "Ras-related protein Rab-6", "gene_name": "rab6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQHEIISEVDITDGGKPALKEGDGFCSSSRC", "length": 208 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9NRW1-1", "protein_name": "Ras-related protein Rab-6B", "gene_name": "RAB6B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC", "length": 208 }, "evidence": [ { "id": "A0A5G2QXM7", "url": "https://omabrowser.org/oma/group/A0A5G2QXM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "endosome to plasma membrane transport vesicle", "id": "GO:0070381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070381", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "acrosomal membrane", "id": "GO:0002080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002080", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "myosin V binding", "id": "GO:0031489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031489", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum", "id": "GO:0006890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006890", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "protein localization to Golgi membrane", "id": "GO:1903292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903292", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "antigen processing and presentation", "id": "GO:0019882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019882", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" }, { "name": "early endosome to Golgi transport", "id": "GO:0034498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034498", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQR4-1", "uniprot_ac": "A0A5G2QQR4", "uniprot_id": "A0A5G2QQR4_PIG", "mass": { "chemical_mass": 42161.0, "monoisotopic_mass": 42161.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QQR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QQR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047473", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047473", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDITEIQRIIREYYIQLYANKMANLEEMDTFLEKYNLLRLNQDEIEKMNGPIARTEIETVIKKLPKNKSPGPDGFTGEFYQTFREELTPLLLKQFQKNSEEGTLPISFYEATITLISKPDRDTTKKENYRPVSLMNIDAKILNEILENHIQKYIKRIIHHDQVGFIPGMQGFFNMHKSISVIHHLHKLKYENRMILSIDAEKGFDRIQHPFLIKILQKGGIEGISLNIIEAIYDKPRANTILNGEKLKEFPLRSGTRQGCPLLPLLFNIVLEVLSIAFREEKEIKGIQIGKEEVKLSLLADDMILYLENPHNATRKLLELINEFGNTKFIQRKQMHFYILTMKDQKGKLGKQSHLPFHQKE", "length": 361, "header": "tr|A0A5G2QQR4-1|A0A5G2QQR4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQR4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4/entry", "sequence": { "sequence": "MDITEIQRIIREYYIQLYANKMANLEEMDTFLEKYNLLRLNQDEIEKMNGPIARTEIETVIKKLPKNKSPGPDGFTGEFYQTFREELTPLLLKQFQKNSEEGTLPISFYEATITLISKPDRDTTKKENYRPVSLMNIDAKILNEILENHIQKYIKRIIHHDQVGFIPGMQGFFNMHKSISVIHHLHKLKYENRMILSIDAEKGFDRIQHPFLIKILQKGGIEGISLNIIEAIYDKPRANTILNGEKLKEFPLRSGTRQGCPLLPLLFNIVLEVLSIAFREEKEIKGIQIGKEEVKLSLLADDMILYLENPHNATRKLLELINEFGNTKFIQRKQMHFYILTMKDQKGKLGKQSHLPFHQKE", "length": 361, "header": "tr|A0A5G2QQR4-1|A0A5G2QQR4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQR4-1" }, "locus": { "chromosome": "1", "start_pos": 79373402, "end_pos": 79372320, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087237.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087237.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067078.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067078.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQR4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 361, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQR4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQR4" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 361, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQS4-1", "uniprot_ac": "A0A5G2QQS4", "uniprot_id": "A0A5G2QQS4_PIG", "mass": { "chemical_mass": 44078.0, "monoisotopic_mass": 44078.0 }, "refseq": {}, "gene_names": [ { "name": "VSIG8", "type": "recommended", "evidence": [ { "id": "A0A5G2QQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4" } ] } ], "protein_names": [ { "name": "V-set and immunoglobulin domain containing 8", "type": "synonym", "evidence": [ { "id": "A0A5G2QQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VSIG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4", "locus": { "chromosome": "4", "start_pos": 90645388, "end_pos": 90637077, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006399", "url": "https://www.ensembl.org/id/ENSSSCG00000006399" } ] } } ], "crossref": [ { "id": "A0A5G2QQS4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQS4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006399", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006399", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45166:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45166:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L926", "url": "https://www.uniprot.org/uniprotkb/I3L926", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L926-1", "url": "https://www.uniprot.org/uniprotkb/I3L926-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVRGALHLLLVCLSPALLSAVRINGDGQEILYLAEGDNVRLGCPYILDPEDYGPNGLDIEWMQVHSDPSHRENVFLSYQDKRINHGNLPHLQQRVRFAASDPSQYDASITLSNLQVSDTATYECRVKKTTMATRRVIVTVQARPAVPMCWSEGHMTRGNDIVLKCFANGGSPPLSYKWAKISGYTHPYRAGSYHSQHSFHSELSYQESFHSTINQGLSNGDLVLKAIGPEDDGLYQCTVANHVGYSVCVVEVKVSDTKRIGMIIGAVLGSLLMLACLFVGIWGLVCWCCGGTGAGGTRGAFGYGNGGGVGGGACGDLANEIREDAVAPGCKASGRGSRVTHLLGYPTQNISRSLRRKYAPPPCGGPEDVALAPRTAAAACEAGPSPVYIKVKSAEPADCAAEGQLPGKDGLLV", "length": 414, "header": "tr|A0A5G2QQS4-1|A0A5G2QQS4_PIG Isoform 1 of V-set and immunoglobulin domain containing 8 OS=Sus scrofa OX=9823 GN=VSIG8 PE=1 SV=1 CANONICAL=A0A5G2QQS4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4/entry", "sequence": { "sequence": "MGVRGALHLLLVCLSPALLSAVRINGDGQEILYLAEGDNVRLGCPYILDPEDYGPNGLDIEWMQVHSDPSHRENVFLSYQDKRINHGNLPHLQQRVRFAASDPSQYDASITLSNLQVSDTATYECRVKKTTMATRRVIVTVQARPAVPMCWSEGHMTRGNDIVLKCFANGGSPPLSYKWAKISGYTHPYRAGSYHSQHSFHSELSYQESFHSTINQGLSNGDLVLKAIGPEDDGLYQCTVANHVGYSVCVVEVKVSDTKRIGMIIGAVLGSLLMLACLFVGIWGLVCWCCGGTGAGGTRGAFGYGNGGGVGGGACGDLANEIREDAVAPGCKASGRGSRVTHLLGYPTQNISRSLRRKYAPPPCGGPEDVALAPRTAAAACEAGPSPVYIKVKSAEPADCAAEGQLPGKDGLLV", "length": 414, "header": "tr|A0A5G2QQS4-1|A0A5G2QQS4_PIG Isoform 1 of V-set and immunoglobulin domain containing 8 OS=Sus scrofa OX=9823 GN=VSIG8 PE=1 SV=1 CANONICAL=A0A5G2QQS4-1" }, "locus": { "chromosome": "4", "start_pos": 90644384, "end_pos": 90637370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088967.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088967.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060629.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060629.1" } ] } }, { "isoform_ac": "I3L926-1", "url": "https://www.uniprot.org/uniprotkb/I3L926/entry", "sequence": { "sequence": "MVEGEGLKLTTQVLVLFPLPHLPCDNVRLGCPYILDPEDYGPNGLDIEWMQVHSDPSHRENVFLSYQDKRINHGNLPHLQQRVRFAASDPSQYDASITLSNLQVSDTATYECRVKKTTMATRRVIVTVQARPAVPMCWSEGHMTRGNDIVLKCFANGGSPPLSYKWAKISGYTHPYRAGSYHSQHSFHSELSYQESFHSTINQGLSNGDLVLKAIGPEDDGLYQCTVANHVGYSVCVVEVKVSDTKRIGMIIGAVLGSLLMLACLFVGIWGLVCWCCGGTGAGGTRGAFGYGNGGGVGGGACGDLANEIREDAVAPGCKASGRGSRVTHLLGYPTQNISRSLRRKYAPPPCGGPEDVALAPRTTAPATAAAAAAAAACEAGPSPVYIKVKSAEPADCAAEGQLPGKDGLLV", "length": 411, "header": "tr|I3L926-1|I3L926_PIG Computationally mapped isoform of V-set and immunoglobulin domain containing 8 OS=Sus scrofa OX=9823 GN=VSIG8 PE=1 SV=4 CANONICAL=A0A5G2QQS4-1" }, "locus": { "chromosome": "4", "start_pos": 90644384, "end_pos": 90640543, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022278.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022278.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020537.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020537.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQS4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 414, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQS4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQS4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS4" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 140, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 350, "end_pos": 352 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQS9-1", "uniprot_ac": "A0A5G2QQS9", "uniprot_id": "A0A5G2QQS9_PIG", "mass": { "chemical_mass": 12802.0, "monoisotopic_mass": 12802.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQS9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043321", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043321", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRNLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAFLTGVRWYLMVVLICISLIISDVEHFFMCLPAICISSLENSLFRSFAHFYIG", "length": 112, "header": "tr|A0A5G2QQS9-1|A0A5G2QQS9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQS9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9/entry", "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRNLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAFLTGVRWYLMVVLICISLIISDVEHFFMCLPAICISSLENSLFRSFAHFYIG", "length": 112, "header": "tr|A0A5G2QQS9-1|A0A5G2QQS9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQS9-1" }, "locus": { "chromosome": "13", "start_pos": 119436761, "end_pos": 119436426, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082335.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082335.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060634.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060634.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQS9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQS9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQS9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQT4-1", "uniprot_ac": "A0A5G2QQT4", "uniprot_id": "A0A5G2QQT4_PIG", "mass": { "chemical_mass": 21649.0, "monoisotopic_mass": 21649.0 }, "refseq": {}, "gene_names": [ { "name": "COMMD9", "type": "recommended", "evidence": [ { "id": "A0A5G2QQT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" } ] } ], "protein_names": [ { "name": "COMM domain containing 9", "type": "synonym", "evidence": [ { "id": "A0A5G2QQT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COMMD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4", "locus": { "chromosome": "2", "start_pos": 24839079, "end_pos": 24819569, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013293", "url": "https://www.ensembl.org/id/ENSSSCG00000013293" } ] } } ], "crossref": [ { "id": "A0A5G2QQT4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013293", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013293", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04757", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04757", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR017920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048676", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048676", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15663:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15663:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7L1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHG3", "url": "https://www.uniprot.org/uniprotkb/F1SHG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHG3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQLLQALHRLTRVAVFRDLSSEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISLPRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAVANK", "length": 197, "header": "tr|A0A5G2QQT4-1|A0A5G2QQT4_PIG Isoform 1 of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=1 CANONICAL=A0A5G2QQT4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4/entry", "sequence": { "sequence": "MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQLLQALHRLTRVAVFRDLSSEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISLPRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAVANK", "length": 197, "header": "tr|A0A5G2QQT4-1|A0A5G2QQT4_PIG Isoform 1 of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=1 CANONICAL=A0A5G2QQT4-1" }, "locus": { "chromosome": "2", "start_pos": 24838234, "end_pos": 24819593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071857.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071857.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060639.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060639.1" } ] } }, { "isoform_ac": "A0A5G2R1Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Q5/entry", "sequence": { "sequence": "MTDVIFCSKIGVFRASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQLLQALHRLTRAILALFPENFHQNLKNLLTKIILEHVVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAVANK", "length": 161, "header": "tr|A0A5G2R1Q5-1|A0A5G2R1Q5_PIG Computationally mapped isoform of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=1 CANONICAL=A0A5G2QQT4-1" }, "locus": { "chromosome": "2", "start_pos": 24838234, "end_pos": 24832274, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072701.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072701.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071049.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071049.1" } ] } }, { "isoform_ac": "A0A5G2R7L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7L1/entry", "sequence": { "sequence": "MAALTAENFAALQSLLKLLQALHRLTRVAVFRDLSSEAILALFPENFHQNLKNLLTKIILEHVSTWRAEAQANQISLPRLVDLDWRVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAVANK", "length": 155, "header": "tr|A0A5G2R7L1-1|A0A5G2R7L1_PIG Computationally mapped isoform of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=1 CANONICAL=A0A5G2QQT4-1" }, "locus": { "chromosome": "2", "start_pos": 24838234, "end_pos": 24819593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086853.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086853.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072336.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072336.1" } ] } }, { "isoform_ac": "A0A5G2RKT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKT5/entry", "sequence": { "sequence": "MIIFFSFSLGPFWVLSDFQLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQLLQALHRLTRAILALFPENFHQNLKNLLTKIILEHVVDIKTSSDSISRLAVPTCLLQMKIQEDPSLCGDKPSVSAVTVELSKETLDTMLDGLGRIRDQLSAVANK", "length": 168, "header": "tr|A0A5G2RKT5-1|A0A5G2RKT5_PIG Computationally mapped isoform of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=2 CANONICAL=A0A5G2QQT4-1" }, "locus": { "chromosome": "2", "start_pos": 24838234, "end_pos": 24831347, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071593.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071593.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072803.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072803.2" } ] } }, { "isoform_ac": "F1SHG3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHG3/entry", "sequence": { "sequence": "MAALTAENFAALQSLLKASSKDVVRQLCQESFSSSAVGSKKLLDITCSSLSVTQEEAEQLLQALHRLTRVAVFRDLSSEAILALFPENFHQNLKNLLTKIILEHVLSAAPGRPGLEGGHQDLLRQHQPPGRAHLPAPDEDPGRPQSVWGQALCVSCHRGAEGDAGHHAGWAGPHPRPAFCRGQQ", "length": 184, "header": "tr|F1SHG3-1|F1SHG3_PIG Computationally mapped isoform of COMM domain containing 9 OS=Sus scrofa OX=9823 GN=COMMD9 PE=1 SV=3 CANONICAL=A0A5G2QQT4-1" }, "locus": { "chromosome": "2", "start_pos": 24838233, "end_pos": 24819593, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014518.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014518.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014125.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014125.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 197, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQT4" }, { "id": "PS51269", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51269" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "COMM", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 195, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQV6-1", "uniprot_ac": "A0A5G2QQV6", "uniprot_id": "A0A5G2QQV6_PIG", "mass": { "chemical_mass": 14962.0, "monoisotopic_mass": 14962.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQV6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQV6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045027", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045027", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMRVHVSLLSRVFLSGYMPKRGIVGSYGSSMYRFLRYLQTVIHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLENSLFRSFAHFSID", "length": 130, "header": "tr|A0A5G2QQV6-1|A0A5G2QQV6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQV6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6/entry", "sequence": { "sequence": "MNMRVHVSLLSRVFLSGYMPKRGIVGSYGSSMYRFLRYLQTVIHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLENSLFRSFAHFSID", "length": 130, "header": "tr|A0A5G2QQV6-1|A0A5G2QQV6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQV6-1" }, "locus": { "chromosome": "2", "start_pos": 26011175, "end_pos": 26010786, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085622.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085622.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066432.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066432.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 130, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQV6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQV7-1", "uniprot_ac": "A0A5G2QQV7", "uniprot_id": "A0A5G2QQV7_PIG", "mass": { "chemical_mass": 13557.0, "monoisotopic_mass": 13557.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049367", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049367", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCLFVLFRVSFAMQKLFSLITYHLFIFVFVVNTLRGGSEKMLLLFMLESVWSVFSSKNFIVSGLISRSLIHLEFIFGYGVRECSNFILFHVAVQFSQHHLSNKLSFLHCIFLPHLS", "length": 117, "header": "tr|A0A5G2QQV7-1|A0A5G2QQV7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQV7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7/entry", "sequence": { "sequence": "MGCLFVLFRVSFAMQKLFSLITYHLFIFVFVVNTLRGGSEKMLLLFMLESVWSVFSSKNFIVSGLISRSLIHLEFIFGYGVRECSNFILFHVAVQFSQHHLSNKLSFLHCIFLPHLS", "length": 117, "header": "tr|A0A5G2QQV7-1|A0A5G2QQV7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQV7-1" }, "locus": { "chromosome": "6", "start_pos": 162556273, "end_pos": 162551907, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079138.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079138.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060664.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060664.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 117, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQV7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQW1-1", "uniprot_ac": "A0A5G2QQW1", "uniprot_id": "A0A5G2QQW1_PIG", "mass": { "chemical_mass": 11224.0, "monoisotopic_mass": 11224.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QQW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000047850", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047850", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QQW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRKLHTVFHSGCTNLQSHQQCTRVPFSLHPLQYLLCVDFLMMAILAGVRWYLIVVLICISLLMSDVEHLFMCVLAICMSSLEN", "length": 100, "header": "tr|A0A5G2QQW1-1|A0A5G2QQW1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQW1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1/entry", "sequence": { "sequence": "MPRSGIAGSNGSSMFSFLRKLHTVFHSGCTNLQSHQQCTRVPFSLHPLQYLLCVDFLMMAILAGVRWYLIVVLICISLLMSDVEHLFMCVLAICMSSLEN", "length": 100, "header": "tr|A0A5G2QQW1-1|A0A5G2QQW1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QQW1-1" }, "locus": { "chromosome": "5", "start_pos": 76683319, "end_pos": 76683020, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079422.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079422.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066437.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066437.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQW9-1", "uniprot_ac": "A0A5G2QQW9", "uniprot_id": "A0A5G2QQW9_PIG", "mass": { "chemical_mass": 83182.0, "monoisotopic_mass": 83182.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QQW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QQW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042567", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042567", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRLGSSQVHKDGSTYANQSTSYTTLTKKSQNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 712, "header": "tr|A0A5G2QQW9-1|A0A5G2QQW9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QQW9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9/entry", "sequence": { "sequence": "MTRLGSSQVHKDGSTYANQSTSYTTLTKKSQNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 712, "header": "tr|A0A5G2QQW9-1|A0A5G2QQW9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QQW9-1" }, "locus": { "chromosome": "15", "start_pos": 61975907, "end_pos": 61973772, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080585.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080585.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064456.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064456.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 712, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQW9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQW9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 212, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 562, "end_pos": 564 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QQZ4-1", "uniprot_ac": "A0A5G2QQZ4", "uniprot_id": "A0A5G2QQZ4_PIG", "mass": { "chemical_mass": 14568.0, "monoisotopic_mass": 14568.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ubiquitin-like protein FUBI", "type": "recommended", "evidence": [ { "id": "A0A5G2QQZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QQZ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048332", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048332", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQISDRAQELRPLEVTSQETVSQIKAHVASLEGIAPEDQVLLLAGTPLEDEGILGQCGVEALSTLEVAGCMLGGKVHGSLAMFPSSEVSLPRWPNTRKRRRSAGPRDSAIQPGLCQRCVHLWQEEGTQCQLLGPL", "length": 135, "header": "tr|A0A5G2QQZ4-1|A0A5G2QQZ4_PIG Isoform 1 of Ubiquitin-like protein FUBI OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QQZ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4/entry", "sequence": { "sequence": "MQISDRAQELRPLEVTSQETVSQIKAHVASLEGIAPEDQVLLLAGTPLEDEGILGQCGVEALSTLEVAGCMLGGKVHGSLAMFPSSEVSLPRWPNTRKRRRSAGPRDSAIQPGLCQRCVHLWQEEGTQCQLLGPL", "length": 135, "header": "tr|A0A5G2QQZ4-1|A0A5G2QQZ4_PIG Isoform 1 of Ubiquitin-like protein FUBI OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QQZ4-1" }, "locus": { "chromosome": "11", "start_pos": 21922510, "end_pos": 21922106, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069624.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069624.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060699.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060699.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-72649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "resource": "Reactome", "description": "Translation initiation complex formation" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "resource": "Reactome", "description": "Formation of the ternary complex, and subsequently, the 43S complex" }, { "id": "R-SSC-72702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "resource": "Reactome", "description": "Ribosomal scanning and start codon recognition" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" }, { "name": "cytosolic ribosome", "id": "GO:0022626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022626", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" }, { "name": "modification-dependent protein catabolic process", "id": "GO:0019941", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019941", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" }, { "name": "protein tag activity", "id": "GO:0031386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031386", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QQZ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QQZ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QQZ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QQZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ4" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 74, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR35-1", "uniprot_ac": "A0A5G2QR35", "uniprot_id": "A0A5G2QR35_PIG", "mass": { "chemical_mass": 12930.0, "monoisotopic_mass": 12930.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR35", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049422", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049422", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYRSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QR35-1|A0A5G2QR35_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR35-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35/entry", "sequence": { "sequence": "MPKSGIVGSYRSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICVSSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QR35-1|A0A5G2QR35_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR35-1" }, "locus": { "chromosome": "15", "start_pos": 38497112, "end_pos": 38496777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067473.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067473.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060740.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060740.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR35" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR53-1", "uniprot_ac": "A0A5G2QR53", "uniprot_id": "A0A5G2QR53_PIG", "mass": { "chemical_mass": 15770.0, "monoisotopic_mass": 15770.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR53", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR53", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043710", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043710", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILYPATWLNVLISSSSFWVESLRFSICSMMSSAYSDSFTSSLPIWMPFISFVCLTAVARTSSTMLKNIVESGHPCLVPDFSGKAFSFFPLSIIFAVWLAINGFDYVKVCSLYTHFDKSFDHEWMLDFFKCFFFIY", "length": 137, "header": "tr|A0A5G2QR53-1|A0A5G2QR53_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR53-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR53-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53/entry", "sequence": { "sequence": "MLILYPATWLNVLISSSSFWVESLRFSICSMMSSAYSDSFTSSLPIWMPFISFVCLTAVARTSSTMLKNIVESGHPCLVPDFSGKAFSFFPLSIIFAVWLAINGFDYVKVCSLYTHFDKSFDHEWMLDFFKCFFFIY", "length": 137, "header": "tr|A0A5G2QR53-1|A0A5G2QR53_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR53-1" }, "locus": { "chromosome": "2", "start_pos": 117710943, "end_pos": 117710150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070557.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070557.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067229.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067229.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR53", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR53" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR53" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR61-1", "uniprot_ac": "A0A5G2QR61", "uniprot_id": "A0A5G2QR61_PIG", "mass": { "chemical_mass": 10043.0, "monoisotopic_mass": 10043.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR61", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR61", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044983", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044983", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVSSSIHGAANGIMSFFFKAEWYSIVYIYHFFLIHLSVDGHLGCFHVLAIVNTAAVNMQVHVSFSRNILSRYMPKSGLAGSYGSSVYSF", "length": 90, "header": "tr|A0A5G2QR61-1|A0A5G2QR61_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR61-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61/entry", "sequence": { "sequence": "MRVSSSIHGAANGIMSFFFKAEWYSIVYIYHFFLIHLSVDGHLGCFHVLAIVNTAAVNMQVHVSFSRNILSRYMPKSGLAGSYGSSVYSF", "length": 90, "header": "tr|A0A5G2QR61-1|A0A5G2QR61_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR61-1" }, "locus": { "chromosome": "4", "start_pos": 31266239, "end_pos": 31265970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085592.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085592.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060765.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060765.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR61-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 90, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR61-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR61" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR69-1", "uniprot_ac": "A0A5G2QR69", "uniprot_id": "A0A5G2QR69_PIG", "mass": { "chemical_mass": 21398.0, "monoisotopic_mass": 21398.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR69", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR69", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051742", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051742", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIQVFCPFFHWVAGFFDVACVSSSYILEIKPLSVASFETIFSHSVSCLFVCFLVSFAVQKLVSLMRSHWFSFAFISVALGDGPEKTVVRLMSENVLPMFSSRSLMVSCLLFRSFSHFEFVLVHGVRVCSSFIDMHVAVQVSQQYLLKDCVFPILCSCPLCQGVIDSKCLALSLGCLFHSISLYVCFGTTLS", "length": 192, "header": "tr|A0A5G2QR69-1|A0A5G2QR69_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR69-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69/entry", "sequence": { "sequence": "MSIQVFCPFFHWVAGFFDVACVSSSYILEIKPLSVASFETIFSHSVSCLFVCFLVSFAVQKLVSLMRSHWFSFAFISVALGDGPEKTVVRLMSENVLPMFSSRSLMVSCLLFRSFSHFEFVLVHGVRVCSSFIDMHVAVQVSQQYLLKDCVFPILCSCPLCQGVIDSKCLALSLGCLFHSISLYVCFGTTLS", "length": 192, "header": "tr|A0A5G2QR69-1|A0A5G2QR69_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR69-1" }, "locus": { "chromosome": "X", "start_pos": 74150532, "end_pos": 74149957, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089495.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089495.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066547.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066547.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR69-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 192, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR69-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR69" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR72-1", "uniprot_ac": "A0A5G2QR72", "uniprot_id": "A0A5G2QR72_PIG", "mass": { "chemical_mass": 18138.0, "monoisotopic_mass": 18138.0 }, "refseq": {}, "gene_names": [ { "name": "EDDM13", "type": "recommended", "evidence": [ { "id": "A0A5G2QR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72" } ] } ], "protein_names": [ { "name": "Epididymal protein 13", "type": "synonym", "evidence": [ { "id": "A0A5G2QR72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EDDM13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72", "locus": { "chromosome": "6", "start_pos": 60587051, "end_pos": 60558957, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049238", "url": "https://www.ensembl.org/id/ENSSSCG00000049238" } ] } } ], "crossref": [ { "id": "A0A5G2QR72", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR72", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049238", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049238", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHTSGPLWKMLLLILSFLGLAGACIPREVATEEKIKLLKGIVGMMSRLSSDGLRLSGNPFKRPSLAPPQDRTEEEIKKILGLLSLQVLNEETNGCKEEVKFLPTPIPTKKPLKKRTRWSSLRCVYMILTFLFVSYNKGDWCYCHYCNPEVDTRSDPCCAF", "length": 160, "header": "tr|A0A5G2QR72-1|A0A5G2QR72_PIG Isoform 1 of Epididymal protein 13 OS=Sus scrofa OX=9823 GN=EDDM13 PE=4 SV=1 CANONICAL=A0A5G2QR72-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR72-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72/entry", "sequence": { "sequence": "MHTSGPLWKMLLLILSFLGLAGACIPREVATEEKIKLLKGIVGMMSRLSSDGLRLSGNPFKRPSLAPPQDRTEEEIKKILGLLSLQVLNEETNGCKEEVKFLPTPIPTKKPLKKRTRWSSLRCVYMILTFLFVSYNKGDWCYCHYCNPEVDTRSDPCCAF", "length": 160, "header": "tr|A0A5G2QR72-1|A0A5G2QR72_PIG Isoform 1 of Epididymal protein 13 OS=Sus scrofa OX=9823 GN=EDDM13 PE=4 SV=1 CANONICAL=A0A5G2QR72-1" }, "locus": { "chromosome": "6", "start_pos": 60586767, "end_pos": 60558957, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090029.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090029.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060775.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060775.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR72", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR72" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR72-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 160, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR72-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR72" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR80-1", "uniprot_ac": "A0A5G2QR80", "uniprot_id": "A0A5G2QR80_PIG", "mass": { "chemical_mass": 12841.0, "monoisotopic_mass": 12841.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR80", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR80", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043527", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043527", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLLLVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QR80-1|A0A5G2QR80_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR80-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80/entry", "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLLLVLICISLIISDVEHFFMCLLAICISSLEKCLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QR80-1|A0A5G2QR80_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR80-1" }, "locus": { "chromosome": "15", "start_pos": 15141710, "end_pos": 15141375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078926.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078926.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067259.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067259.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR80" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR84-1", "uniprot_ac": "A0A5G2QR84", "uniprot_id": "A0A5G2QR84_PIG", "mass": { "chemical_mass": 17455.0, "monoisotopic_mass": 17455.0 }, "refseq": {}, "gene_names": [ { "name": "GZMH", "type": "recommended", "evidence": [ { "id": "A0A5G2QR84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ] } ], "protein_names": [ { "name": "Granzyme H (cathepsin G-like 2, protein h-CCPX)", "type": "synonym", "evidence": [ { "id": "A0A5G2QR84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GZMH", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84", "locus": { "chromosome": "7", "start_pos": 74727568, "end_pos": 74723954, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001978", "url": "https://www.ensembl.org/id/ENSSSCG00000001978" } ] } } ], "crossref": [ { "id": "A0A5G2QR84", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR84", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001978", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001978", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF70", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF70", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022377", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022377", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZI87", "url": "https://www.uniprot.org/uniprotkb/A0A286ZI87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZI87-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZI87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8R3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8R3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8R3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPVLLSLAFLLSPGGMEEIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHCRGSSINVTLGAHNIKKQEETQQVIPVRKAIRHPDYNPNFSNDIMLLQGDSGGPLVCKNVVQGIFSYGKMDGTPPGVFTKVSHFLPWIKKTMKPL", "length": 158, "header": "tr|A0A5G2QR84-1|A0A5G2QR84_PIG Isoform 1 of Granzyme H (cathepsin G-like 2, protein h-CCPX) OS=Sus scrofa OX=9823 GN=GZMH PE=1 SV=1 CANONICAL=A0A5G2QR84-1" }, "isoforms": [ { "isoform_ac": "A0A286ZI87-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZI87/entry", "sequence": { "sequence": "LSPVLRLHRPEEEIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHCRGSSINVTLGAHNIKKQEETQQVIPVRKADSLAFSHQLERKAKLTKAVKTLGLPGAKARVKPGQVCSVAGWGQVARGIQTSTLQEAKLRVQDDVACEFPFPSGYYHRASQICVGNPRDMKTSFKGDSGGPLVCKNVVQGIFSYGKMDGTPPGVFTKVSHFLPWIKKTMKPL", "length": 229, "header": "tr|A0A286ZI87-1|A0A286ZI87_PIG Computationally mapped isoform of Granzyme H (cathepsin G-like 2, protein h-CCPX) OS=Sus scrofa OX=9823 GN=GZMH PE=1 SV=2 CANONICAL=A0A5G2QR84-1" }, "locus": { "chromosome": "7", "start_pos": 74727311, "end_pos": 74725159, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047682.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047682.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031260.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031260.2" } ] } }, { "isoform_ac": "A0A5G2QR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84/entry", "sequence": { "sequence": "MQPVLLSLAFLLSPGGMEEIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHCRGSSINVTLGAHNIKKQEETQQVIPVRKAIRHPDYNPNFSNDIMLLQGDSGGPLVCKNVVQGIFSYGKMDGTPPGVFTKVSHFLPWIKKTMKPL", "length": 158, "header": "tr|A0A5G2QR84-1|A0A5G2QR84_PIG Isoform 1 of Granzyme H (cathepsin G-like 2, protein h-CCPX) OS=Sus scrofa OX=9823 GN=GZMH PE=1 SV=1 CANONICAL=A0A5G2QR84-1" }, "locus": { "chromosome": "7", "start_pos": 74727311, "end_pos": 74723954, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087120.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087120.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066562.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066562.1" } ] } }, { "isoform_ac": "A0A5G2QWH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWH7/entry", "sequence": { "sequence": "MTAPKALRVPQLCPQAPSSPLSAPLALPPRPSAEIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHCRGSSINVTLGAHNIKKQEETQQVIPVRKADSLAFSHQLERKAKLTKAVKTLGLPGAKARVKPGQVCSVAGWGQVARGIQTSTLQEAKLRVQDDVACEFPFPSGYYHRASQICVGNPRDMKTSFKGDSGGPLVCKNVVQGIFSYGKMDGTPPGVFTKVSHFLPWIKKTMKPL", "length": 250, "header": "tr|A0A5G2QWH7-1|A0A5G2QWH7_PIG Computationally mapped isoform of Granzyme H (cathepsin G-like 2, protein h-CCPX) OS=Sus scrofa OX=9823 GN=GZMH PE=1 SV=1 CANONICAL=A0A5G2QR84-1" }, "locus": { "chromosome": "7", "start_pos": 74727311, "end_pos": 74724434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072877.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072877.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069304.1" } ] } }, { "isoform_ac": "A0A5G2R8R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8R3/entry", "sequence": { "sequence": "MQPVLLSLAFLLSPGGMEEIIGGHEAKPHSRPYMAFVRFLDKESVKRCGGVLVRKDFVLTAAHCRGSSINVTLGAHNIKKQEETQQVIPVRKAIRHPDYNPNFSNDIMLLQLERKAKLTKAVKTLGLPGAKARVKPGQVCSVAGWGQVARGIQTSTLQEAKLRVQDDVACEFPFPSGYYHRASQICVGNPRDMKTSFKGDSGGPLVCKNVVQGIFSYGKMDGTPPGVFTKVSHFLPWIKKTMKPL", "length": 245, "header": "tr|A0A5G2R8R3-1|A0A5G2R8R3_PIG Computationally mapped isoform of Granzyme H (cathepsin G-like 2, protein h-CCPX) OS=Sus scrofa OX=9823 GN=GZMH PE=1 SV=1 CANONICAL=A0A5G2QR84-1" }, "locus": { "chromosome": "7", "start_pos": 74727311, "end_pos": 74723954, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087727.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087727.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073476.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073476.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022377", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022377", "resource": "Reactome", "description": "Metabolism of Angiotensinogen to Angiotensins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR84", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR84-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR84-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR84" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QR84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR84" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 156, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR89-1", "uniprot_ac": "A0A5G2QR89", "uniprot_id": "A0A5G2QR89_PIG", "mass": { "chemical_mass": 175162.0, "monoisotopic_mass": 175162.0 }, "refseq": {}, "gene_names": [ { "name": "NFASC", "type": "recommended", "evidence": [ { "id": "A0A5G2QR89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ] } ], "protein_names": [ { "name": "Neurofascin", "type": "recommended", "evidence": [ { "id": "A0A5G2QR89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEF6", "url": "https://www.uniprot.org/uniprotkb/A0A287BEF6#function" }, { "database": "UniProtKB", "id": "ARBA00057855", "url": "https://www.uniprot.org/uniprotkb/ARBA00057855#function" }, { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NFASC", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89", "locus": { "chromosome": "9", "start_pos": 65713518, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022951", "url": "https://www.ensembl.org/id/ENSSSCG00000022951" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022951", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022951", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05731", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05731", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05845", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05845", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05875", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05875", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44170:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44170:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13882", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13882", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-447043", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-447043", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A236", "url": "https://www.uniprot.org/uniprotkb/A0A287A236", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A236-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A236-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2A1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARR9", "url": "https://www.uniprot.org/uniprotkb/A0A287ARR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWW6", "url": "https://www.uniprot.org/uniprotkb/A0A287AWW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEF6", "url": "https://www.uniprot.org/uniprotkb/A0A287BEF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAPPTSPPTTVGATGIVSSTDVTATAATTEATTVPTIPTVAPTTIATTTVATTTTTTAATTTTTTTTTTESPPTTTRTKIQESAPDEQSIWNVTVLPNSKWANITWKHNFGPGTDFVVEYIDSNHTKKTVPVKAQAQPIQLTDLYPGMTYTLRVYSRDNEGISSTVITFMTSTAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1582, "header": "tr|A0A5G2QR89-1|A0A5G2QR89_PIG Isoform 1 of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=1 CANONICAL=A0A5G2QR89-1" }, "isoforms": [ { "isoform_ac": "A0A287A236-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A236/entry", "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDLPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAPDEQSIWNVTVLPNSKWANITWKHNFGPGTDFVVEYIDSNHTKKTVPVKAQAQPIQLTDLYPGMTYTLRVYSRDNEGISSTVITFMTSTAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1376, "header": "tr|A0A287A236-1|A0A287A236_PIG Computationally mapped isoform of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=1 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061692.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061692.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037997.1" } ] } }, { "isoform_ac": "A0A287A2A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2A1/entry", "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEATPTAAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1415, "header": "tr|A0A287A2A1-1|A0A287A2A1_PIG Computationally mapped isoform of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=2 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053341.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053341.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038065.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038065.2" } ] } }, { "isoform_ac": "A0A287ARR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARR9/entry", "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEGRCIATTYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1416, "header": "tr|A0A287ARR9-1|A0A287ARR9_PIG Computationally mapped isoform of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=2 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037397.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037397.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046762.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046762.2" } ] } }, { "isoform_ac": "A0A287AWW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWW6/entry", "sequence": { "sequence": "MLDEWAIAPSPLPYLSASCSHPTPLSSIWKFPGQRLNLFHNSDLSCCSDDAESLTCCATRELCLSISSCQAPNTPTALQSGTSGSKPITLHLKSSRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDLSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1334, "header": "tr|A0A287AWW6-1|A0A287AWW6_PIG Computationally mapped isoform of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=2 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65545735, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045207.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045207.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048641.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048641.2" } ] } }, { "isoform_ac": "A0A287BEF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEF6/entry", "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAPDEQSIWNVTVLPNSKWANITWKHNFGPGTDFVVEYIDSNHTKKTVPVKAQAQPIQLTDLYPGMTYTLRVYSRDNEGISSTVITFMTSTAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1500, "header": "tr|A0A287BEF6-1|A0A287BEF6_PIG Computationally mapped isoform of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=3 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041255.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041255.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054929.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054929.3" } ] } }, { "isoform_ac": "A0A5G2QR89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89/entry", "sequence": { "sequence": "MVEGHIQNKLVIPLGLQSTSSRVFPWGAVGDQRTETENYHFLQRSPWVGEKVKTVLVLQIAPQRAPAGPRGSSLPCSSSVPVPARRAKGGARGRARRVSGTRRLLGDAHGLVSALMRRLAARGAAGDAGEVAPPAADSTDCAPGRSPSPCRLIDLCAIWDAGVFLPAAVAAAWKGAPSGVPRRRLNEAETLSSVQKAQLQRLEAARPRGPGSGDRGPVPRMARQQPPPWVHAAILFSLLSLSTAIEIPMDPSIQNELSQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFNLKVLTNHPYNDSSLRNHPDMYSARGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKLENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDVPPRMLSPRNQLIRVILYNRTRLDCPFFGSPIPTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVKDPTRIYRMPEDQVAQRGTTVQLECRVKHDPSLKLTVSWLKDDEPLYIGNRMKKEEDSLTIFGVAERDQGSYTCVASTELDQDLAKAYLTVLADQATPTNRLAALPKGRPDRPRDLELTDLAERSVRLTWIPGDDNNSPITDYVVQFEEDQFQPGVWHDHSKFPGSVNSAVLQLSPYVNYQFRVIAINEVGSSHPSLPSERYRTSGAPPESNPSDVKGEGTRKNNMEITWTPMNATSAFGPNLRYIVKWRRRETRETWNNVTVWGSRYVVGQTPVYVPYEIRVQAENDFGKGPEPDTVIGYSGEDYPRAAPTDVKIRVLNSTAISLQWNRVYSDTVQGQLREYRAYYWRESSLLKNLWVSQKRQQAGFPGDRLRGVVSRLFPYSNYKLEMVVVNGRGDGPRSETKEFTTPEGVPSAPRRFRVRQPNLETINLEWDHPEHPNGILIGYTLKYVAFNGTKVGKQIVENFSPNQTKFTVQRADPVSRYRFSLSARTQVGSGEAVTEESPAPPNEAPPTSPPTTVGATGIVSSTDVTATAATTEATTVPTIPTVAPTTIATTTVATTTTTTAATTTTTTTTTTESPPTTTRTKIQESAPDEQSIWNVTVLPNSKWANITWKHNFGPGTDFVVEYIDSNHTKKTVPVKAQAQPIQLTDLYPGMTYTLRVYSRDNEGISSTVITFMTSTAYTNNQADIATQGWFIGLMCAIALLVLILLIVCFIKRSRGGKYPVREKKDVPLGPEDPKEEDGSFDYSDEDNKPLQGSQTSLDGTIKQQESDDSLVDYGEGGEGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAIYSLA", "length": 1582, "header": "tr|A0A5G2QR89-1|A0A5G2QR89_PIG Isoform 1 of Neurofascin OS=Sus scrofa OX=9823 GN=NFASC PE=1 SV=1 CANONICAL=A0A5G2QR89-1" }, "locus": { "chromosome": "9", "start_pos": 65709355, "end_pos": 65502259, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070188.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070188.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066567.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066567.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 512, "start_aa": "Thr", "end_pos": 512, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr512", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-447043", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-447043", "resource": "Reactome", "description": "Neurofascin interactions" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cell-cell adhesion mediator activity", "id": "GO:0098632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098632", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1015, "end_pos": 1017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1075, "end_pos": 1077, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1210, "end_pos": 1212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1221, "end_pos": 1223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1225, "end_pos": 1227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1357, "end_pos": 1359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1389, "end_pos": 1391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1566, "end_pos": 1568, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 646, "end_pos": 648, "annotation": "n_glycosylation_sequon" }, { "start_pos": 683, "end_pos": 685, "annotation": "n_glycosylation_sequon" }, { "start_pos": 720, "end_pos": 722, "annotation": "n_glycosylation_sequon" }, { "start_pos": 891, "end_pos": 893, "annotation": "n_glycosylation_sequon" }, { "start_pos": 989, "end_pos": 991, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QR89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 867, "end_pos": 962, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QR89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR89" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 261, "end_pos": 357, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 512 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1015, "end_pos": 1017 }, { "start_pos": 1075, "end_pos": 1077 }, { "start_pos": 1210, "end_pos": 1212 }, { "start_pos": 1221, "end_pos": 1223 }, { "start_pos": 1225, "end_pos": 1227 }, { "start_pos": 1357, "end_pos": 1359 }, { "start_pos": 1368, "end_pos": 1370 }, { "start_pos": 1389, "end_pos": 1391 }, { "start_pos": 1566, "end_pos": 1568 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 646, "end_pos": 648 }, { "start_pos": 683, "end_pos": 685 }, { "start_pos": 720, "end_pos": 722 }, { "start_pos": 891, "end_pos": 893 }, { "start_pos": 989, "end_pos": 991 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR93-1", "uniprot_ac": "A0A5G2QR93", "uniprot_id": "A0A5G2QR93_PIG", "mass": { "chemical_mass": 31208.0, "monoisotopic_mass": 31208.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QR93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93", "locus": {} } ], "crossref": [ { "id": "A0A5G2QR93", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043570", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043570", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QR93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPHQTEKLLHSKGNQKKTKRQLTEWEKIVSNDATNKGLISRIYKQLIQPNSKKANQSMEKWAKDLNRPFSKEDIQMSSKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWEWKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYLDKTLLKRDTCTCMFIAALFTISRTWKQPKCPSTDDWIRKMWCIYTMEYYSAIKKNDIMPLAATWMELENLILSEMSQKDKDKYQMISIITGI", "length": 263, "header": "tr|A0A5G2QR93-1|A0A5G2QR93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR93-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93/entry", "sequence": { "sequence": "MGPHQTEKLLHSKGNQKKTKRQLTEWEKIVSNDATNKGLISRIYKQLIQPNSKKANQSMEKWAKDLNRPFSKEDIQMSSKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWEWKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYLDKTLLKRDTCTCMFIAALFTISRTWKQPKCPSTDDWIRKMWCIYTMEYYSAIKKNDIMPLAATWMELENLILSEMSQKDKDKYQMISIITGI", "length": 263, "header": "tr|A0A5G2QR93-1|A0A5G2QR93_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QR93-1" }, "locus": { "chromosome": "6", "start_pos": 55364981, "end_pos": 55364193, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068793.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068793.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060795.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 263, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR93" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRB1-1", "uniprot_ac": "A0A5G2QRB1", "uniprot_id": "A0A5G2QRB1_PIG", "mass": { "chemical_mass": 29326.0, "monoisotopic_mass": 29326.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Neurexin 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QRB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028942", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028942", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036:SF85", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036:SF85", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFTTHSVFFTLKVSVLLGSLLGLCLGLEFMGLPNQWARYLRWDASTRSDLSFQFKTNVSTGLLLYLDDGGVCDFLCLSLVDGRVRLRFSMDCAETEVLSHKQVNDSSWHFLMVSRDRLRTVLVLDGEGQSGELQPQRPYMDVVSDLFLGGVPADIRPSALTLDGVQAMPGFKGLILDLKYGNSEPRLLGSQGVQLDAEGPCGERPCENGGICFLLDGHPTCDCSTTGYGGKLCSEGKVLFPVPLLLEAQPVGWVRTKTSDRNQLRH", "length": 267, "header": "tr|A0A5G2QRB1-1|A0A5G2QRB1_PIG Isoform 1 of Neurexin 3 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QRB1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1/entry", "sequence": { "sequence": "MSFTTHSVFFTLKVSVLLGSLLGLCLGLEFMGLPNQWARYLRWDASTRSDLSFQFKTNVSTGLLLYLDDGGVCDFLCLSLVDGRVRLRFSMDCAETEVLSHKQVNDSSWHFLMVSRDRLRTVLVLDGEGQSGELQPQRPYMDVVSDLFLGGVPADIRPSALTLDGVQAMPGFKGLILDLKYGNSEPRLLGSQGVQLDAEGPCGERPCENGGICFLLDGHPTCDCSTTGYGGKLCSEGKVLFPVPLLLEAQPVGWVRTKTSDRNQLRH", "length": 267, "header": "tr|A0A5G2QRB1-1|A0A5G2QRB1_PIG Isoform 1 of Neurexin 3 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QRB1-1" }, "locus": { "chromosome": "7", "start_pos": 101205748, "end_pos": 101204948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075791.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075791.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067294.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067294.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRB1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 267, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRB1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRB1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 235, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QRB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB1" }, { "id": "PS50025", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50025" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin G", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 202, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRE3-1", "uniprot_ac": "A0A5G2QRE3", "uniprot_id": "A0A5G2QRE3_PIG", "mass": { "chemical_mass": 14345.0, "monoisotopic_mass": 14345.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QRE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRE3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QRE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSSLRYLHTVFHSDCTNLHSHQQCRRVPFSPHHLQHLLFVDLLMIAVLIGVRWYLIAVLICISLIISDIEHLFMCLLAICISSLEKCLFRTFAHFSIGLLVFCFCFCLAVELYKLFVYFRN", "length": 122, "header": "tr|A0A5G2QRE3-1|A0A5G2QRE3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRE3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3/entry", "sequence": { "sequence": "MYSSLRYLHTVFHSDCTNLHSHQQCRRVPFSPHHLQHLLFVDLLMIAVLIGVRWYLIAVLICISLIISDIEHLFMCLLAICISSLEKCLFRTFAHFSIGLLVFCFCFCLAVELYKLFVYFRN", "length": 122, "header": "tr|A0A5G2QRE3-1|A0A5G2QRE3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRE3-1" }, "locus": { "chromosome": "5", "start_pos": 46667905, "end_pos": 46667540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068798.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068798.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066622.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066622.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRE3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRE3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRE3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRE3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRF0-1", "uniprot_ac": "A0A5G2QRF0", "uniprot_id": "A0A5G2QRF0_PIG", "mass": { "chemical_mass": 2062.0, "monoisotopic_mass": 2062.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QRF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRF0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRF0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041741", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041741", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QRF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NNNDLRFGAGTRLTVKASK", "length": 19, "header": "tr|A0A5G2QRF0-1|A0A5G2QRF0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRF0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0/entry", "sequence": { "sequence": "NNNDLRFGAGTRLTVKASK", "length": 19, "header": "tr|A0A5G2QRF0-1|A0A5G2QRF0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRF0-1" }, "locus": { "chromosome": "7", "start_pos": 76523540, "end_pos": 76523484, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073365.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073365.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066632.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066632.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRF0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 19, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRF0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRF0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRF3-1", "uniprot_ac": "A0A5G2QRF3", "uniprot_id": "A0A5G2QRF3_PIG", "mass": { "chemical_mass": 8701.0, "monoisotopic_mass": 8701.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QRF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRF3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRF3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041579", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041579", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QRF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEKGCMGNSINLLYRDLVSEVNRRRITMTMREEKFTKKSDEAGAILSDVDAEQAPPPSTAGPEVPPAPPPSPAEDAKDSS", "length": 81, "header": "tr|A0A5G2QRF3-1|A0A5G2QRF3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRF3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3/entry", "sequence": { "sequence": "MAEKGCMGNSINLLYRDLVSEVNRRRITMTMREEKFTKKSDEAGAILSDVDAEQAPPPSTAGPEVPPAPPPSPAEDAKDSS", "length": 81, "header": "tr|A0A5G2QRF3-1|A0A5G2QRF3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRF3-1" }, "locus": { "chromosome": "9", "start_pos": 114083139, "end_pos": 114080099, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072328.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072328.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060851.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060851.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRF3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 81, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRF3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRF3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRG9-1", "uniprot_ac": "A0A5G2QRG9", "uniprot_id": "A0A5G2QRG9_PIG", "mass": { "chemical_mass": 12198.0, "monoisotopic_mass": 12198.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Reverse transcriptase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QRG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGFFNIHKSIRVIYHINKLKNKNHMIISIDEGKAFDKIQYSFLIKTLQTVGLEGTYLNIIKTVCNKLTANIVLNGEKLKEFPLRSGTRQGGPLATSIKHNFESPSHG", "length": 108, "header": "tr|A0A5G2QRG9-1|A0A5G2QRG9_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QRG9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9/entry", "sequence": { "sequence": "MQGFFNIHKSIRVIYHINKLKNKNHMIISIDEGKAFDKIQYSFLIKTLQTVGLEGTYLNIIKTVCNKLTANIVLNGEKLKEFPLRSGTRQGGPLATSIKHNFESPSHG", "length": 108, "header": "tr|A0A5G2QRG9-1|A0A5G2QRG9_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QRG9-1" }, "locus": { "chromosome": "9", "start_pos": 5342652, "end_pos": 5342329, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079136.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079136.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067359.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067359.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 108, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG9" }, { "id": "PF00078", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 98, "start_aa": "Tyr", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRI7-1", "uniprot_ac": "A0A5G2QRI7", "uniprot_id": "A0A5G2QRI7_PIG", "mass": { "chemical_mass": 124551.0, "monoisotopic_mass": 124551.0 }, "refseq": {}, "gene_names": [ { "name": "ITPRID1", "type": "recommended", "evidence": [ { "id": "A0A5G2QRI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" } ] } ], "protein_names": [ { "name": "ITPR interacting domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QRI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ITPRID1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7", "locus": { "chromosome": "18", "start_pos": 41456829, "end_pos": 41589002, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016671", "url": "https://www.ensembl.org/id/ENSSSCG00000016671" } ] } } ], "crossref": [ { "id": "A0A5G2QRI7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRI7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016671", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016671", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PDICTRI", "url": "https://omabrowser.org/oma/group/PDICTRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15387", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15387", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15387:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15387:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17469", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17469", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17469:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17469:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14722", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14722", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14723", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14723", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TKU8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TKU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0TKU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TKU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIK0", "url": "https://www.uniprot.org/uniprotkb/F1SIK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIK0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQMTVKDYMRSLHQVSETPTLSRGTSFNSCYSAASIPQSIPEWLEFCEKDPVEILLDLGFGADEPDICTQIPARFLGGSSAARGINIRVFLEAQKQRMDIENPNLYSRFRQLEILDHVASAFSSLLNDVNVLQNKAEEEDEGKIVPGTSVSEAKGHQRRMAELFRRGSKQNIKKDYTLEASESLKMRDEFPITSARAGACRAELPAMTNDHDPSHLSPSSEHWSLQACDDLTPCHPPQAVLSKQWPRSSMPAKQAPLSCVSEASVKTRTRKENSSQTNKLKSLPRLAGKAPESFEMEEVQSFEEEASNPLDMTSGTVGAMVNRANSCQSDSSGFLEEPPEPPPLQMPPLSSSQSPGESGYRKPRDQSHSSGSSQDCQQESDESDSRSSMVSTSFSSQDWSVLEEKASTSVVEKGSQFEAMEGPPGQLSQDLALDKTPPGGELPRKDSQQQQPQAECETVVGTDPSKGDCPRGLTVAHIAEVKDDPLRPGRAGDVEVCVQTHPCGSQRPPGISPPQDKFLRVDSEAPRGVESSPLCPGTNPLLMHKDVPQHVPRHLEVMPSAVSCVHLSEESVPHLGKVVGDVPQARPRCRALGQIPLRAESEMGRLPPNADFNAVSSKSVTVQMPSSLASAAQNAVVSGMDSRGATVECTKCDPVTAAEPGLGTEARQFSDVSVQTYACESRLWHCCSAPSKKAQPLTKSVSLDTGFPGLYSVGTCPAVPAHCCVCYHHHLHCHPERQSPSSVSSAYRHCSCSHKHPEAQFTRRLEVLQDTTARELYSCTVHEMETMKMVCQSFREHLEEIEQHLRGQQALFSRDMSEEEREEAEQLQTLREALRQEVEELEFQLGDRAQQIREGILLQLELLTEDPPESHTNLHRHSWTEEKNGQTSWASGAAFPPSDGQQAPCSEHPHGNSGSWSLDKRLWSQAASATATEEPAQLQGGSSLSPSFAFSSQPLYRLPSVGLEKKSYTDPPWMMSTEQVQPLELSEDRLDKLDPRCGHLDDLSDQFFKDCDLKKKPRKGKNVQVTLNVESDQKKPRRKDTPALHIPPFIPGVLSEHLIKRYDVQERHPKGKTNPALHNTDLEQKKPRRKDTPALHVSPFASGVTLLRDERPKVILEDDEKDGDKIAI", "length": 1129, "header": "tr|A0A5G2QRI7-1|A0A5G2QRI7_PIG Isoform 1 of ITPR interacting domain containing 1 OS=Sus scrofa OX=9823 GN=ITPRID1 PE=4 SV=2 CANONICAL=A0A5G2QRI7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7/entry", "sequence": { "sequence": "MVQMTVKDYMRSLHQVSETPTLSRGTSFNSCYSAASIPQSIPEWLEFCEKDPVEILLDLGFGADEPDICTQIPARFLGGSSAARGINIRVFLEAQKQRMDIENPNLYSRFRQLEILDHVASAFSSLLNDVNVLQNKAEEEDEGKIVPGTSVSEAKGHQRRMAELFRRGSKQNIKKDYTLEASESLKMRDEFPITSARAGACRAELPAMTNDHDPSHLSPSSEHWSLQACDDLTPCHPPQAVLSKQWPRSSMPAKQAPLSCVSEASVKTRTRKENSSQTNKLKSLPRLAGKAPESFEMEEVQSFEEEASNPLDMTSGTVGAMVNRANSCQSDSSGFLEEPPEPPPLQMPPLSSSQSPGESGYRKPRDQSHSSGSSQDCQQESDESDSRSSMVSTSFSSQDWSVLEEKASTSVVEKGSQFEAMEGPPGQLSQDLALDKTPPGGELPRKDSQQQQPQAECETVVGTDPSKGDCPRGLTVAHIAEVKDDPLRPGRAGDVEVCVQTHPCGSQRPPGISPPQDKFLRVDSEAPRGVESSPLCPGTNPLLMHKDVPQHVPRHLEVMPSAVSCVHLSEESVPHLGKVVGDVPQARPRCRALGQIPLRAESEMGRLPPNADFNAVSSKSVTVQMPSSLASAAQNAVVSGMDSRGATVECTKCDPVTAAEPGLGTEARQFSDVSVQTYACESRLWHCCSAPSKKAQPLTKSVSLDTGFPGLYSVGTCPAVPAHCCVCYHHHLHCHPERQSPSSVSSAYRHCSCSHKHPEAQFTRRLEVLQDTTARELYSCTVHEMETMKMVCQSFREHLEEIEQHLRGQQALFSRDMSEEEREEAEQLQTLREALRQEVEELEFQLGDRAQQIREGILLQLELLTEDPPESHTNLHRHSWTEEKNGQTSWASGAAFPPSDGQQAPCSEHPHGNSGSWSLDKRLWSQAASATATEEPAQLQGGSSLSPSFAFSSQPLYRLPSVGLEKKSYTDPPWMMSTEQVQPLELSEDRLDKLDPRCGHLDDLSDQFFKDCDLKKKPRKGKNVQVTLNVESDQKKPRRKDTPALHIPPFIPGVLSEHLIKRYDVQERHPKGKTNPALHNTDLEQKKPRRKDTPALHVSPFASGVTLLRDERPKVILEDDEKDGDKIAI", "length": 1129, "header": "tr|A0A5G2QRI7-1|A0A5G2QRI7_PIG Isoform 1 of ITPR interacting domain containing 1 OS=Sus scrofa OX=9823 GN=ITPRID1 PE=4 SV=2 CANONICAL=A0A5G2QRI7-1" }, "locus": { "chromosome": "18", "start_pos": 41574977, "end_pos": 41457244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077655.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077655.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064651.2" } ] } }, { "isoform_ac": "A0A8D0TKU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0TKU8/entry", "sequence": { "sequence": "MMSTEQVQPLELSEDRLDKLDPRCGHLGVLSEHLIKRYDVQERHPKGKTNPALHNTDLEQKKPRRKDTPALHVSPFASGVTLLRDERPKVILEDDEKDGDKIAI", "length": 104, "header": "tr|A0A8D0TKU8-1|A0A8D0TKU8_PIG Computationally mapped isoform of ITPR interacting domain containing 1 OS=Sus scrofa OX=9823 GN=ITPRID1 PE=4 SV=1 CANONICAL=A0A5G2QRI7-1" }, "locus": { "chromosome": "18", "start_pos": 41468421, "end_pos": 41457244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090626.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090626.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063750.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063750.1" } ] } }, { "isoform_ac": "F1SIK0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK0/entry", "sequence": { "sequence": "MMAEKSHRGQEKSRRDILRSTKKAWTPQDEQLPPGSEEASQSLTIPMLEDSKQESIQQWLDSGFLVSANENFQPVIDHFVSFHEQGMVQMTVKDYMRSLHQVSETPTLSRGTSFNSCYSAASIPQSIPEWLEFCEKDPVEILLDLGFGADEPDICTQIPARFLGGSSAARGINIRVFLEAQKQRMDIENPNLYSRFRQLEILDHVASAFSSLLNDVNVLQNKAEEEDEGKIVPGTSVSEAKGHQRRMAELFRRGSKQNIKKDYTLEASESLKMRDEFPITSARAGACRAELPAMTNDHDPSHLSPSSEHWSLQACDDLTPCHPPQAVLSKQWPRSSMPAKQAPLSCVSEASVKTRTRKENSSQTNKLKSLPRLAGKAPESFEMEEVQSFEEEASNPLDMTSGTVGAMVNRANSCQSDSSGFLEEPPEPPPLQMPPLSSSQSPGESGYRKPRDQSHSSGSSQDCQQESDESDSRSSMVSTSFSSQDWSVLEEKASTSVVEKGSQFEAMEGPPGQLSQDLALDKTPPGGELPRKDSQQQQPQAECETVVGTDPSKGDCPRGLTVAHIAEVKDDPLRPGRAGDVEVCVQTHPCGSQRPPGISPPQDKFLRVDSEAPRGVESSPLCPGTNPLLMHKDVPQHVPRHLEVMPSAVSCVHLSEESVPHLGKVVGDVPQARPRCRALGQIPLRAESEMGRLPPNADFNAVSSKSVTVQMPSSLASAAQNAVVSGMDSRGATVECTKCDPVTAAEPGLGTEARQFSDVSVQTYACESRLWHCCSAPSKKAQPLTKSVSLDTGFPGLYSVGTCPAVPAHCCVCYHHHLHCHPERQSPSSVSSAYRHCSCSHKHPEAQFTRRLEVLQDTTARELYSCTVHEMETMKMVCQSFREHLEEIEQHLRGQQALFSRDMSEEEREEAEQLQTLREALRQEVEELEFQLGDRAQQIREGILLQLELLTEDPPESHTNLHRHSWTEEKNGQTSWASGAAFPPSDGQQAPCSGFSLDTIAEVVGKDSHLSLLKFA", "length": 1016, "header": "tr|F1SIK0-1|F1SIK0_PIG Computationally mapped isoform of ITPR interacting domain containing 1 OS=Sus scrofa OX=9823 GN=ITPRID1 PE=4 SV=2 CANONICAL=A0A5G2QRI7-1" }, "locus": { "chromosome": "18", "start_pos": 41588983, "end_pos": 41496326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018150.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018150.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017659.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017659.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ASI7-1", "protein_name": "ITPR interacting domain containing 1", "gene_name": "Itprid1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIMEKLQGSDIPRASLEKRKRDILRHTKRAWAPLDGHLLPDSEEENPMVTMFVQENSKQESIQQWLDSEFFVSVNENFQQAINHSAPLHEQGIVQMTVKDYMRSLHQFSETPALSRGTSLNSCYSSTGVPQSIPEWLEFWEKDPVEILLDLGFGADEPDICTQIPARFLGYSSAARGINIGVFLEAQKQRIDFENPDLYGRFRQLEILNHVTNAFSSLLNGVNTLQSQDEEKAERQVMQNPSSGEVKERKRKMSQLLGRASRQTSRMDGDSALSESFKMQHEILTLPTKPWDPRAELQVSSISHDRCQMLPATEHGSVQACNDVSTCPPPQGFLDKQWPCSCTLAKQSPHTCLSEGSFRRRTWKEKWIHMDKLKNLSHIVSKGPDSFEMEEVQSFEEDTGNPLTLTSGIVGTRVDRTNSCQSDSSGFLEELPELQPLQVSSLAGSQSPTVYRGCKSRDQSPSTASWQDSQQESYGSKSESIASSSVLSQDRSTLEEKDSASVMEEELQLRDMEGPPEIVNPDMTLPKTIMVGEHPEGVAGTVLTSTCNNTTGVTVTYVTEKEDSSLGHKGTGKMLIESHHFESLRSSKFDQTLDNFYHVDSDIPGTEDNSKVFPDTKQSSLVQERPAQHSHEHRGDMPYKGDLVQTSDKSILHLDKPPGDVPTDSNAASSWSVTTQVSSNLVSAAQRVAELGTYNKETAFEYTPCDPLNSTVLKLQRETRQVNNVAVQTYAYECQLRPYHNDFIHGPSPLTKSISLDTGFPSTSPTGICHTTPAHCCVCCHHCPNCQWMRQSPGPEPSICRHFQYSHAEEPKVQFMKTLKILQDTTVRDLCSCTVYEMETMKMVCQSFQEHLEEIEQHFMGQQALFPGDMSEEEREEAEYLRTLREALRQQVAELAFQLGDRARQIKEGILLQLDLLCEELPEHCTNQPQCNRTEGKHVQRSCVQAHTVAPEPVLPASSRQSTSGSGMTQLDTLSPSDLETTRRMSLQSPDMVESVLGPSLSQVGEKSLLDQSDFDDFYIKWNVQEQL", "length": 1028 }, "evidence": [ { "id": "A0A5G2QRI7", "url": "https://omabrowser.org/oma/group/A0A5G2QRI7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14B48-1", "protein_name": "Protein ITPRID1", "gene_name": "Itprid1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIMEELQGSDTPRAGLEMSKRDILRHTKRAWAPLDGHLLPDSEEENPMVTMYVQENSKQESIQQWLDSGFFVSVNENFQQTINHTASLHEQGIIQMTVKDYMRSLHQFSETPTLSRGTSFNSCYSTTGVPQSIPEWLEFWEKDPVEILLDLGFGADEPDICTQIPARFLGYSSAARGINIHVFLEAQKQRMDFENPDLYGRFQQLEILDHVTNAFSSLLDGVKTQQNQHEEKAERQAMQNPSSSGAKEHKRKMSQLLKRASRQTSRMDGNPALSKSCKTEHEIPTLPTKPWDPRVELQVASISHDASQMLPLIECGSAQVHNDLSPCPPLCPPPHALLDKPWPCSCTLAKQSPHTCLSEGSVRRRNWKEKWNHMDRLKNLSHIVSKGPDSFEMEEVQSFEEDTGNPLILTSGIVGTRVDRTNSCQSDSSGFLEELPELQPLQVSSMTGSQSPTVCRGCKPRDQSHSPASQQDSLQESYGSKSKSMTSSSLLSQDWSTLEENASASVVEEELQLKAMEEPPEIVNPDMTLIKTIMVGEHPESVAGPVVTSTSTCNNTMGVLVTHVTEKEDRSVGHKGTRKMLIQRHHFESPRSFRIDQPSDNFYHVDSEITKTEDNCKVCPDTKQSSLVQERPAQHSHQHRGAMPYKGDLVQTSEKSIPHLDKPPGHVPTDSNAASSWSVTTQMSSNLVSAAQRVADLGTYNKGTAFECTPCDPLNTTDLKLQTETRQVKDVAVQTYAHECKLRPSHNDFIHGPRPLAKSISLDTGFPSISATGFCHTIPAHCCVCCHHCPNCQWRRQSPGPEPSICRHSLYSQAEDPKVQFMKTLKILQDTTVRDLCSCTVYEMETMKMVCQSFREHLEEIEQHFMGQQALYPRDMSEEEREEAEYLRTLREALRQQVAELAFQLGDRARQIKEGILLQLDLLCEELPEHCDNLPQCNWTEGKHGQRSCVQTHAVAPDPTLPASSGQWTPCSGMTQPVALSPSHLETRGGISLQSPARAESGPGPSLSHVGEKSLLDQSGFDDLCTKCNVQEQL", "length": 1034 }, "evidence": [ { "id": "A0A5G2QRI7", "url": "https://omabrowser.org/oma/group/A0A5G2QRI7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZRS4-1", "protein_name": "Protein ITPRID1", "gene_name": "ITPRID1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMAQKSQGSDNLQEGQEKSKREILKCTKSAWAPLDEWLPPDPEEESQSLTIPMLEDSKQESIQQWLDSGFFVSANENFQQVIDRTVSLYEQGMVQMTVKDYMRSLHQFSETPILSRGTSFNSCYSTASVPQSIPEWLEFWEIDPVEILLDLGFGADEPDICMQIPARFLGCGSAARGINIRVFLEAQKQRMDIENPNLYGRFRQLEILDHVTNAFSSLLSDVSILPNRAEEKAGGESVQRTSVSAAKEHRRRMGKLLRRASKQNIRRDCNPEVSESFKVKDEVFVPFTKPWDCGAELAATSINHKQNHLSLSVEHQSLQACDDLLPYPPHGLLSKQWPCSSMPAKQAPPSCVSEGSVKGRTQKENLFQTNKLKSLSHLAGKGPDSFEMEEVQSFEEETGNPLDMTSGTVGARVDRANSCQSDSSGFLEEPLEPLPLQMPSLPNSQSPAENGGRKPRDQSHSLVSSQDCQLESDGPDSKSRASMSFSSQEANALEQRASVSVMEEEFLLEAMEGPPELYIPDMACAKTTTRGECPRKDSHLWQLLPMPHAEYEVTRPTATSKYDHPLGFMVTHVTEMQDSFVRPEGAGKVQSHHNESQRSPGNDHTQDKFLHVDSEAPREEESSGFCPHTNHSLLVPESSSQCIPKHSEITPYATDLAQTSEKLIPHLHKLPGDPAQVKSRSGTLGQILPGTEAEMENLPLNTGSSRSVMTQMSSSLVSAAQRAVALGTGPRGTSLECTVCDPVTATETRLGTKARQLNDASIQTSALSNKTLTHGPQPLTKSVSLDSGFSSICPMGTCHAIPAHCCICCHHHPHCHGERQSPGPEPSVCRHCLCSLTGHQEAQFMTTLKALQDTTVRELCSCTVHEMEAMKTICQSFREYLEEIEQHLMGQQALFSRDMSEEEREEAEQLQTLREALRQQVAELEFQLGDRAQQIREGILLQLEVLTAEPPEHYSNLHQYNWIEESNGQTSCSKIHPGMAPRTVFPPDDGQEAPCSGGTQLAAFTPPTLENSTRMSPSSSAWAKLGPTPLSNCPVGEKDADVFL", "length": 1044 }, "evidence": [ { "id": "A0A5G2QRI7", "url": "https://omabrowser.org/oma/group/A0A5G2QRI7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" } ], "pmid": "" }, { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRI7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRI7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRI7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRI7" }, { "id": "SM01257", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01257" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ITPR-interacting", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 172, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 274, "end_pos": 276 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRJ4-1", "uniprot_ac": "A0A5G2QRJ4", "uniprot_id": "A0A5G2QRJ4_PIG", "mass": { "chemical_mass": 75479.0, "monoisotopic_mass": 75479.0 }, "refseq": {}, "gene_names": [ { "name": "SLC6A19", "type": "recommended", "evidence": [ { "id": "A0A5G2QRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ] } ], "protein_names": [ { "name": "Solute carrier family 6 member 19", "type": "synonym", "evidence": [ { "id": "A0A5G2QRJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC6A19", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4", "locus": { "chromosome": "16", "start_pos": 79293943, "end_pos": 79310922, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017120", "url": "https://www.ensembl.org/id/ENSSSCG00000017120" } ] } } ], "crossref": [ { "id": "A0A5G2QRJ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017120", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017120", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "7.4.2.1", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=7.4.2.1&UniProtAcc=A0A5G2QRJ4", "database": "BRENDA", "categories": [ "Enzyme and Pathway" ] }, { "id": "IPR000175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11616:SF125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11616:SF125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00209", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00209", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-352230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-442660", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442660", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S025", "url": "https://www.uniprot.org/uniprotkb/F1S025", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S025-1", "url": "https://www.uniprot.org/uniprotkb/F1S025-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRLVLPNPGLEARIPSHAQLERIEVEEGGSRPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGEESLAGSFKKEGFTSPGARSYLSFLWEKEPRTVHPWKEQGAFMIPFLILLVLEGIPLLHLEFAIGQRLRKGSVGVWSAIHPALKGLGVASMFVSFMVGLYYNTIIAWVMWYFFNSFQDPLPWSQCPLNANQTGYVEECARSSSVDYFWYRETLNISTSISASGSVQWWILLCLTCAWSVLYVCTIRGIETTGKAVYVTSTLPYVVLTIFLIRGLTLKGAVNGLVFLFTPNVTELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDSVIVSVINGFTSVYAATVVYSIIGFRATERFDDCFSANILTLINGFDLPEGNVTQENFAEMQQWCNASDPEAFARLKFQTCDMNSFLSEGVEGTGLAFIVFTEAITKMPVSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLKVIPKTWPKELLTGLICLGTYLIAFIFTLNSGQYWLSLLDSYAGSIPLLIIAFFEMFAVVYVYGVDRFNSDIEFMIGHQPNLFWQVTWRVVSPLLMLVIFLFFFVIQVNQELIYSVWDPAYEEFPKSQKVKYPSWVYAVVVLVAGVPCLIIPGFAIYRLIRDRYQRPGDRQGLVSALSTASVNGDLKA", "length": 673, "header": "tr|A0A5G2QRJ4-1|A0A5G2QRJ4_PIG Isoform 1 of Solute carrier family 6 member 19 OS=Sus scrofa OX=9823 GN=SLC6A19 PE=1 SV=1 CANONICAL=A0A5G2QRJ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4/entry", "sequence": { "sequence": "MVRLVLPNPGLEARIPSHAQLERIEVEEGGSRPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGEESLAGSFKKEGFTSPGARSYLSFLWEKEPRTVHPWKEQGAFMIPFLILLVLEGIPLLHLEFAIGQRLRKGSVGVWSAIHPALKGLGVASMFVSFMVGLYYNTIIAWVMWYFFNSFQDPLPWSQCPLNANQTGYVEECARSSSVDYFWYRETLNISTSISASGSVQWWILLCLTCAWSVLYVCTIRGIETTGKAVYVTSTLPYVVLTIFLIRGLTLKGAVNGLVFLFTPNVTELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDSVIVSVINGFTSVYAATVVYSIIGFRATERFDDCFSANILTLINGFDLPEGNVTQENFAEMQQWCNASDPEAFARLKFQTCDMNSFLSEGVEGTGLAFIVFTEAITKMPVSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLKVIPKTWPKELLTGLICLGTYLIAFIFTLNSGQYWLSLLDSYAGSIPLLIIAFFEMFAVVYVYGVDRFNSDIEFMIGHQPNLFWQVTWRVVSPLLMLVIFLFFFVIQVNQELIYSVWDPAYEEFPKSQKVKYPSWVYAVVVLVAGVPCLIIPGFAIYRLIRDRYQRPGDRQGLVSALSTASVNGDLKA", "length": 673, "header": "tr|A0A5G2QRJ4-1|A0A5G2QRJ4_PIG Isoform 1 of Solute carrier family 6 member 19 OS=Sus scrofa OX=9823 GN=SLC6A19 PE=1 SV=1 CANONICAL=A0A5G2QRJ4-1" }, "locus": { "chromosome": "16", "start_pos": 79310707, "end_pos": 79295284, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083222.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083222.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067384.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067384.1" } ] } }, { "isoform_ac": "F1S025-1", "url": "https://www.uniprot.org/uniprotkb/F1S025/entry", "sequence": { "sequence": "RTAGNRGDHHGEAGAAQPGPGGPDPVARAAGAHRGGGGRLPAQVGQQGPVHAHLRGLLRGPGQRVALPLPVPEPRWRGIYDPFPHPAGLGGDPAAAPGVRHRAEAAQGKRGRLERHPSGAEGLGRGVHVRVLHGGSVLQHHHRLGHVVLLQLLPGPSALEPVPAQCQPDGASGSVQWWILLCLTCAWSVLYVCTIRGIETTGKAVYVTSTLPYVVLTIFLIRGLTLKGAVNGLVFLFTPNVTELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNCEKDSVIVSVINGFTSVYAATVVYSIIGFRATERFDDCFSANILTLINGFDLPEGNVTQENFAEMQQWCNASDPEAFARLKFQTCDMNSFLSEGVEGTGLAFIVFTEAITKMPVSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLKVIPKTWPKELLTGLICLGTYLIAFIFTLNSGQYWLSLLDSYAGSIPLLIIAFFEMFAVVYVYGVDRFNSDIEFMIGHQPNLFWQVTWRVVSPLLMLVIFLFFFVIQVNQELIYSVWDPAYEEFPKSQKVKYPSWVYAVVVLVAGVPCLIIPGFAIYRLIRDRYQRPGDRQGLVSALSTASVNGDLKA", "length": 616, "header": "tr|F1S025-1|F1S025_PIG Computationally mapped isoform of Solute carrier family 6 member 19 OS=Sus scrofa OX=9823 GN=SLC6A19 PE=4 SV=3 CANONICAL=A0A5G2QRJ4-1" }, "locus": { "chromosome": "16", "start_pos": 79310735, "end_pos": 79295284, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018638.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018638.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018137.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018137.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-352230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "resource": "Reactome", "description": "Amino acid transport across the plasma membrane" }, { "id": "R-SSC-442660", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442660", "resource": "Reactome", "description": "SLC-mediated transport of neurotransmitters" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "brush border membrane", "id": "GO:0031526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031526", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "neutral L-amino acid transmembrane transporter activity", "id": "GO:0015175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015175", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "neutral amino acid transport", "id": "GO:0015804", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015804", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "sodium ion transmembrane transport", "id": "GO:0035725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035725", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" }, { "name": "amino acid import across plasma membrane", "id": "GO:0089718", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0089718", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 673, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRJ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 197, "end_pos": 199 }, { "start_pos": 221, "end_pos": 223 }, { "start_pos": 297, "end_pos": 299 }, { "start_pos": 393, "end_pos": 395 }, { "start_pos": 407, "end_pos": 409 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRK7-1", "uniprot_ac": "A0A5G2QRK7", "uniprot_id": "A0A5G2QRK7_PIG", "mass": { "chemical_mass": 17770.0, "monoisotopic_mass": 17770.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110261410", "type": "recommended", "evidence": [ { "id": "A0A5G2QRK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QRK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110261410", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046843", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046843", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QRK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GTQTGCAGPSGRERTVEVSDLCPGRITKVVAGGPRVKGLSPGATFGGAAKGNTVTSKPGAGTGLSPNTDGTTKVQCYQGPSARAAERQLLREESEILEEEVKLRWVQLSQYRELLLKQMTDGQQAEACSWKISRSTLFLTWSPAAFSSRPRALGRKIYSLRAPRCS", "length": 166, "header": "tr|A0A5G2QRK7-1|A0A5G2QRK7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261410 PE=4 SV=1 CANONICAL=A0A5G2QRK7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7/entry", "sequence": { "sequence": "GTQTGCAGPSGRERTVEVSDLCPGRITKVVAGGPRVKGLSPGATFGGAAKGNTVTSKPGAGTGLSPNTDGTTKVQCYQGPSARAAERQLLREESEILEEEVKLRWVQLSQYRELLLKQMTDGQQAEACSWKISRSTLFLTWSPAAFSSRPRALGRKIYSLRAPRCS", "length": 166, "header": "tr|A0A5G2QRK7-1|A0A5G2QRK7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261410 PE=4 SV=1 CANONICAL=A0A5G2QRK7-1" }, "locus": { "chromosome": "6", "start_pos": 165870553, "end_pos": 165867622, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088735.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088735.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067399.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067399.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRL1-1", "uniprot_ac": "A0A5G2QRL1", "uniprot_id": "A0A5G2QRL1_PIG", "mass": { "chemical_mass": 48932.0, "monoisotopic_mass": 48932.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "POM121 transmembrane nucleoporin like 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QRL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRL1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRL1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042999", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042999", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23193:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23193:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSFLGKAGPSPSSPAAGRPDLSERPVNRRPAQSLHQIHRVQHVHRAHPAPRHRPARRPPNWDPKRPATWVVNEAWRRFPMKRSQNSIMGPLPSDWWESYFKRSIWSLRHPRAMWSPVTIKIAPPELTVPPSASPAEVINSGGSSLSEKPPDPLQKGKVRLEQPLFPESLVSEQRILETRPSAFKPLTKNGVLTSFVPRSSDHSFNKRPSCSSRGSLVSTHTGGPLSSKRNAITSSYSSSRDCFEPWKRSIPNVSLQIPEWPVKKKGKCHHTLSLVPLVEDESPETPGSSGEQNQIPLLLSSPGYLLSPTPPPQLGYEVPEDLALGKKAGLQWSNKAGEDKTEVTTDSVPETWSCIQPSLSLAQPSAETASTQGTNPQLESLNKILLAPLGCSKSEPLSGTSSDSKPTAAFILLTPVAPTSSVTDTTWPPSTSQAAVPGDSPAFTQSALNG", "length": 451, "header": "tr|A0A5G2QRL1-1|A0A5G2QRL1_PIG Isoform 1 of POM121 transmembrane nucleoporin like 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRL1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1/entry", "sequence": { "sequence": "MGSFLGKAGPSPSSPAAGRPDLSERPVNRRPAQSLHQIHRVQHVHRAHPAPRHRPARRPPNWDPKRPATWVVNEAWRRFPMKRSQNSIMGPLPSDWWESYFKRSIWSLRHPRAMWSPVTIKIAPPELTVPPSASPAEVINSGGSSLSEKPPDPLQKGKVRLEQPLFPESLVSEQRILETRPSAFKPLTKNGVLTSFVPRSSDHSFNKRPSCSSRGSLVSTHTGGPLSSKRNAITSSYSSSRDCFEPWKRSIPNVSLQIPEWPVKKKGKCHHTLSLVPLVEDESPETPGSSGEQNQIPLLLSSPGYLLSPTPPPQLGYEVPEDLALGKKAGLQWSNKAGEDKTEVTTDSVPETWSCIQPSLSLAQPSAETASTQGTNPQLESLNKILLAPLGCSKSEPLSGTSSDSKPTAAFILLTPVAPTSSVTDTTWPPSTSQAAVPGDSPAFTQSALNG", "length": 451, "header": "tr|A0A5G2QRL1-1|A0A5G2QRL1_PIG Isoform 1 of POM121 transmembrane nucleoporin like 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRL1-1" }, "locus": { "chromosome": "7", "start_pos": 21342128, "end_pos": 21338702, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089191.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089191.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060902.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060902.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 310, "start_aa": "Thr", "end_pos": 310, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr310", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 420, "start_aa": "Thr", "end_pos": 420, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr420", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRL1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 451, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRL1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRL1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 310, 420 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 253, "end_pos": 255 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRR1-1", "uniprot_ac": "A0A5G2QRR1", "uniprot_id": "A0A5G2QRR1_PIG", "mass": { "chemical_mass": 122421.0, "monoisotopic_mass": 122421.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QRR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QRR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRR1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044946", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044946", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKILIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1041, "header": "tr|A0A5G2QRR1-1|A0A5G2QRR1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRR1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1/entry", "sequence": { "sequence": "MKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKILIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1041, "header": "tr|A0A5G2QRR1-1|A0A5G2QRR1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRR1-1" }, "locus": { "chromosome": "1", "start_pos": 220610582, "end_pos": 220607460, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090573.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090573.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067459.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067459.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 834, "end_pos": 836, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" }, { "start_pos": 891, "end_pos": 893, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRR1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1041, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRR1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRR1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 541, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 834, "end_pos": 836 }, { "start_pos": 84, "end_pos": 86 }, { "start_pos": 891, "end_pos": 893 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRV6-1", "uniprot_ac": "A0A5G2QRV6", "uniprot_id": "A0A5G2QRV6_PIG", "mass": { "chemical_mass": 67283.0, "monoisotopic_mass": 67283.0 }, "refseq": { "ac": "XP_003481932", "name": "basal cell adhesion molecule isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481932" }, "gene_names": [ { "name": "BCAM", "type": "recommended", "evidence": [ { "id": "A0A5G2QRV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ] }, { "name": "BCAM", "type": "synonym", "evidence": [ { "id": "XP_003481932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481932" } ] } ], "protein_names": [ { "name": "Basal cell adhesion molecule", "type": "recommended", "evidence": [ { "id": "A0A5G2QRV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6/entry#names_and_taxonomy" } ] }, { "name": "B-CAM cell surface glycoprotein", "type": "synonym", "evidence": [ { "id": "A0A5G2QRV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6/entry#names_and_taxonomy" } ] }, { "name": "Lutheran antigen", "type": "synonym", "evidence": [ { "id": "A0A5G2QRV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6/entry#names_and_taxonomy" } ] }, { "name": "basal cell adhesion molecule isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481932" } ] } ], "function": [ { "annotation": "Transmembrane glycoprotein that functions as both a receptor and an adhesion molecule playing a crucial role in cell adhesion, motility, migration and invasion. Extracellular domain enables binding to extracellular matrix proteins, such as laminin, integrin and other ligands while its intracellular domain interacts with cytoskeletal proteins like hemoglobin, facilitating cell signal transduction. Serves as a receptor for laminin alpha-5/LAMA5 to promote cell adhesion. Mechanistically, JAK2 induces BCAM phosphorylation and activates its adhesion to laminin by stimulating a Rap1/AKT signaling pathway in the absence of EPOR.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY76#function" }, { "database": "UniProtKB", "id": "ARBA00057270", "url": "https://www.uniprot.org/uniprotkb/ARBA00057270#function" }, { "database": "UniProtKB", "id": "I3L9I6", "url": "https://www.uniprot.org/uniprotkb/I3L9I6#function" }, { "database": "UniProtKB", "id": "K7GPM6", "url": "https://www.uniprot.org/uniprotkb/K7GPM6#function" }, { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BCAM", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6", "locus": { "chromosome": "6", "start_pos": 51310528, "end_pos": 51298806, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020657", "url": "https://www.ensembl.org/id/ENSSSCG00000020657" } ] } } ], "crossref": [ { "id": "A0A5G2QRV6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRV6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000020657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738241", "url": "https://www.ncbi.nlm.nih.gov/gene/100738241", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738241", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738241", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYMTIRT", "url": "https://omabrowser.org/oma/group/GYMTIRT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QRV6", "url": "https://www.orthodb.org/?gene=A0A5G2QRV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11973", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11973", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11973:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11973:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481932", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9I6", "url": "https://www.uniprot.org/uniprotkb/I3L9I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9I6-1", "url": "https://www.uniprot.org/uniprotkb/I3L9I6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPM6", "url": "https://www.uniprot.org/uniprotkb/K7GPM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPM6-1", "url": "https://www.uniprot.org/uniprotkb/K7GPM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPDARAPRLLVLALLLGAHPGAEAEVRLSVPPLVEVMRGEPVTLDCTPLGTHDHFVLEWFLADRTGVRHRLASAELQGSELQDKMHDSWGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDIAQEIATCNSRNGNPVPQITWYRNGQRLEVPLEVNSEGYMTSRTVREASGLLSLTSTLYLRLRKADRDASFHCSVHYRLPTGRHGRLDSPAFRLTLHYPTEHVQFWLGSPSTTAGWVREGDSVQLFCRGDGSPTPEYTFFRLQDQEEDVLKTNLEGNLTLEGVQRSQSGTYGCRVEDYDAAEDAELSKTLELHVAYLDPLELSTGEELSLPLGNSTAVNCSVRGLPTPTLRWTKDSVPLGDDSTLSLRSITFDSAGTYTCEASMPTVPLLSRTRSFKLLVQGPPELRAEEVQPKAEGSWREGDEVKLICRTRGYPEPKLSWSQLGGSPAEPAPGGQGWVSSSLTLKVTSALSRDGVSCEASNPHGNDRHVFHFGTVAPQTSQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGHRCCRQGEKGSPLPGEPELSHSGSEGPEQTGLLMGGASGGAKHGSGGFGDEC", "length": 622, "header": "tr|A0A5G2QRV6-1|A0A5G2QRV6_PIG Isoform 1 of Basal cell adhesion molecule OS=Sus scrofa OX=9823 GN=BCAM PE=1 SV=1 CANONICAL=A0A5G2QRV6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6/entry", "sequence": { "sequence": "MEPPDARAPRLLVLALLLGAHPGAEAEVRLSVPPLVEVMRGEPVTLDCTPLGTHDHFVLEWFLADRTGVRHRLASAELQGSELQDKMHDSWGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDIAQEIATCNSRNGNPVPQITWYRNGQRLEVPLEVNSEGYMTSRTVREASGLLSLTSTLYLRLRKADRDASFHCSVHYRLPTGRHGRLDSPAFRLTLHYPTEHVQFWLGSPSTTAGWVREGDSVQLFCRGDGSPTPEYTFFRLQDQEEDVLKTNLEGNLTLEGVQRSQSGTYGCRVEDYDAAEDAELSKTLELHVAYLDPLELSTGEELSLPLGNSTAVNCSVRGLPTPTLRWTKDSVPLGDDSTLSLRSITFDSAGTYTCEASMPTVPLLSRTRSFKLLVQGPPELRAEEVQPKAEGSWREGDEVKLICRTRGYPEPKLSWSQLGGSPAEPAPGGQGWVSSSLTLKVTSALSRDGVSCEASNPHGNDRHVFHFGTVAPQTSQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGHRCCRQGEKGSPLPGEPELSHSGSEGPEQTGLLMGGASGGAKHGSGGFGDEC", "length": 622, "header": "tr|A0A5G2QRV6-1|A0A5G2QRV6_PIG Isoform 1 of Basal cell adhesion molecule OS=Sus scrofa OX=9823 GN=BCAM PE=1 SV=1 CANONICAL=A0A5G2QRV6-1" }, "locus": { "chromosome": "6", "start_pos": 51309372, "end_pos": 51298840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077393.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077393.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060977.1" } ] } }, { "isoform_ac": "A0A5G2QY76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY76/entry", "sequence": { "sequence": "MERDNCPTAQGPALRKVLEAKERARPGPALEGLLVRLSVPPLVEVMRGEPVTLDCTPLGTHDHFVLEWFLADRTGVRHRLASAELQGSELQDKMHDSWGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDIAQEIATCNSRNGNPVPQITWYRNGQRLEVPLEVNSDPTEHVQFWLGSPSTTAGWVREGDSVQLFCRGDGSPTPEYTFFRLQDQEEDVLKTNLEGNLTLEGVQRSQSGTYGCRVEDYDAAEDAELSKTLELHVAYLDPLELSTGEELSLPLGNSTAVNCSVRGLPTPTLRWTKDSVPLGDDSTLSLRSITFDSAGTYTCEASMPTVPLLSRTRSFKLLVQGPPELRAEEVQPKAEGSWREGDEVKLICRTRGYPEPKLSWSQLGGSPAEPAPGGQGWVSSSLTLKVTSALSRDGVSCEASNPHGNDRHVFHFGTVAPQTSQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGHRCCRQGEKGSPLPGEPELSHSGSEGPEQTGLLMGGASGGAKHGSGGFGDEVGQALGTPVKGGPAGSRTASRGLLTLPLPPSAKPEAFTGAVKEPDLESWAPENQSCACASTRPCLPGLPSSLSGPPFLPLEAGQGPQPLACLCWEGGDLPSGSMTLPGPRIAPGPKPKARPGTKLRGSAGRGYFYLLPPSLVPPT", "length": 712, "header": "tr|A0A5G2QY76-1|A0A5G2QY76_PIG Computationally mapped isoform of Basal cell adhesion molecule OS=Sus scrofa OX=9823 GN=BCAM PE=1 SV=2 CANONICAL=A0A5G2QRV6-1" }, "locus": { "chromosome": "6", "start_pos": 51309712, "end_pos": 51300278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087201.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087201.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066901.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066901.2" } ] } }, { "isoform_ac": "I3L9I6-1", "url": "https://www.uniprot.org/uniprotkb/I3L9I6/entry", "sequence": { "sequence": "MERDNCPTAQGPALRKVLEAKERARPGPALEGLLVRLSVPPLVEVMRGEPVTLDCTPLGTHDHFVLEWFLADRTGVRHRLASAELQGSELQDKMHDSWGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDIAQEIATCNSRNGNPVPQITWYRNGQRLEVPLEVNSEGYMTSRTVREASGLLSLTSTLYLRLRKADRDASFHCSVHYRLPTGRHGRLDSPAFRLTLHYPTEHVQFWLGSPSTTAGWVREGDSVQLFCRGDGSPTPEYTFFRLQDQEEDVLKTNLEGNLTLEGVQRSQSGTYGCRVEDYDAAEDAELSKTLELHVAYLDPLELSTGEELSLPLGNSTAVNCSVRGLPTPTLRWTKDSVPLGDDSTLSLRSITFDSAGTYTCEASMPTVPLLSRTRSFKLLVQGPPELRAEEVQPKAEGSWREGDEVKLICRTRGYPEPKLSWSQLGGSPAEPAPGGQGWVSSSLTLKVTSALSRDGVSCEASNPHGNDRHVFHFGTVAPQTSQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGHRCCRQGEKGSPLPGEPELSHSGSEGPEQTGLLMGGASGGAKHGSGGFGDEVGQALGTPVKGGPAGSRTASRGLLTLPLPPSAKPEAFTGAVKEPDLESWAPENQSCACASTRPCLPGLPSSLSGPPFLPLEAGQGPQPLACLCWEGGDLPSGSMTLPGPRIAPGPKPKARPGTKLRGSAGRGYFYLLPPSLVPPT", "length": 773, "header": "tr|I3L9I6-1|I3L9I6_PIG Computationally mapped isoform of Basal cell adhesion molecule OS=Sus scrofa OX=9823 GN=BCAM PE=1 SV=3 CANONICAL=A0A5G2QRV6-1" }, "locus": { "chromosome": "6", "start_pos": 51309712, "end_pos": 51300278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028783.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028783.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020698.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020698.3" } ] } }, { "isoform_ac": "K7GPM6-1", "url": "https://www.uniprot.org/uniprotkb/K7GPM6/entry", "sequence": { "sequence": "MERDNCPTAQGPALRKVLEAKERARPGAEAEVRLSVPPLVEVMRGEPVTLDCTPLGTHDHFVLEWFLADRTGVRHRLASAELQGSELQDKMHDSWGRSPPYQLDSQGRLVLAEAQIATCNSRNGNPVPQITWYRNGQRLEVPLEVNSEGYMTSRTVREASGLLSLTSTLYLRLRKADRDASFHCSVHYRLPTGRHGRLDSPAFRLTLHYPTEHVQFWLGSPSTTAGWVREGDSVQLFCRGDGSPTPEYTFFRLQDQEEDVLKTNLEGNLTLEGVQRSQSGTYGCRVEDYDAAEDAELSKTLELHVAYLDPLELSTGEELSLPLGNSTAVNCSVRGLPTPTLRWTKDSVPLGDDSTLSLRSITFDSAGTYTCEASMPTVPLLSRTRSFKLLVQGPPELRAEEVQPKAEGSWREGDEVKLICRTRGYPEPKLSWSQLGGSPAEPAPGGQGWVSSSLTLKVTSALSRDGVSCEASNPHGNDRHVFHFGTVAPQTSQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGHRCCRQGEKGSPLPGEPELSHSGSEGPEQTGLLMGGASGGAKHGSGGFGDEVGQALGTPVKGGPAGSRTASRGLLTLPLPPSAKPEAFTGAVKEPDLESWAPENQSCACASTRPCLPGLPSSLSGPPFLPLEAGQGPQPLACLCWEGGDLPSGSMTLPGPRIAPGPKPKARPGTKLRGSAGRGYFYLLPPSLVPPT", "length": 718, "header": "tr|K7GPM6-1|K7GPM6_PIG Computationally mapped isoform of Basal cell adhesion molecule OS=Sus scrofa OX=9823 GN=BCAM PE=1 SV=4 CANONICAL=A0A5G2QRV6-1" }, "locus": { "chromosome": "6", "start_pos": 51309712, "end_pos": 51300278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035920.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035920.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029841.4", "url": "https://www.ensembl.org/id/ENSSSCP00000029841.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 293, "start_aa": "Thr", "end_pos": 293, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr293", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738241", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738241", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P50895-1", "protein_name": "Basal cell adhesion molecule", "gene_name": "BCAM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPEYTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAYLDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNGTYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPDPKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTVSPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAPPPGEPGLSHSGSEQPEQTGLLMGGASGGARGGSGGFGDEC", "length": 628 }, "evidence": [ { "id": "A0A5G2QRV6", "url": "https://omabrowser.org/oma/group/A0A5G2QRV6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ESS6-1", "protein_name": "Basal cell adhesion molecule", "gene_name": "Bcam", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPPDARAGLLWLTLLLSGYSGAQAELHVSVPPRVEVMRGEQIALDCTPREHPENYVLEWLLVDASGARHRLASVEPQGSEFLGTIHNSRGRRPPYKIDSLGRLVIAEAQVGDERDYVCVVKAGAAGTSEATSSVRVFATPEATEVAPNKGTLSVMEQFAQEIATCSSNNGNPVPRITWYQNGQRLDVPMELNSKGYMTSRTVREASGLYSLTSTLYLRLHKEDRDASFHCAAHYDLPSGQHGRLDSHTFRLTLHYPTEHVEFWVGSPSTTEGWVREGDAVQLLCQGDGSPSPEYSFFREQGNQEEQLNVNLKGNLTLEGVHRSQSGIYGCRVEDYDADEEVQLVKKLKLHVAYLDPLELSVPEEFSVFLNSSGTVVNCSARGLPAPIVRWTKDSVTVADGPILSLDSVTFDSAGTYTCEASTPTVPLLSRTQSFQLVVQGAPELKPNEIKPKSGTSWTEGDEVMLTCSARGFPEPKLTWSQRGDTTPAEPPFEGRGWMSSSLTLKVTSALSREGVSCEASNIHGKNGHVFHFGSVAPQTAQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGRPGCCQRAEKGAPPAREPELSHSGSERPEHTGLLMGGPSGGGRGGNGGFGDEC", "length": 624 }, "evidence": [ { "id": "A0A5G2QRV6", "url": "https://omabrowser.org/oma/group/A0A5G2QRV6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9MZ08-1", "protein_name": "Basal cell adhesion molecule", "gene_name": "BCAM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPPDARAGARRAPRLLVLALLLAAPPGSKAEVRLSVPPLVEVMRGESVTLDCSPLGTHDYFMLEWFLVDRSGARHRLASAELRGSELRDKELNSRGRSPPYQLDSQGRLVLPEAQVGDERDYVCVVKAGAAGTAEATARLKVFAKPEAPEVSPNKGILSVMDDFAQEIATCSSRNGNPAPQIMWYRNGQPLAVPLEVNSEGYMTTRTVREASGLLSLTSTLYLRLHKPDREASFHCSVHYYLPAGQHGRLDGPSFSLTLHYPTEHVLFWLGSQSTAEGWVREGDSVQLLCQGDGSPTPEYTFFWLQDKQEDVLKTSLEGNLTLERVQRNQSGTYGCRVEDFDVPEDAELSKTLELRVAYLDSLELSAGEELSLPLHNSTTVTCSARGLPTPTLYWTKDSAPMGEDPTLSLHSVTFDSAGTYTCEAYMPRIPLLSRTRSFRLLVQGTPELKAKETQPKAEGSWTEGDEVTLICYARGYPKPKLTWSQLGGSPTEPAPGGQGWVSSSLTLKVTSALSQDGVSCEASNPLGNTHHVFHFGTVAPQTSQAGVAVMAVAISVALLLLVVAVFYCMRRKGRPGCCQWGEKGSPPPGEPKLSHSGSQRPEQTGLLMGSASGGAKHGSGGFGDEC", "length": 628 }, "evidence": [ { "id": "A0A5G2QRV6", "url": "https://omabrowser.org/oma/group/A0A5G2QRV6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9R069-1", "protein_name": "Basal cell adhesion molecule", "gene_name": "Bcam", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPPDARAGLLWLTFLLSGYSGAQAELHVSVPPRVEVMRGEQVALDCTPREHPEHYVLEWFLVDGTGARHRLASVEPQGSEFLGTVHSLGRVPPYEVDSRGRLVIAKVQVGDGRDYVCVVKAGAAGTSEATSSVRVFATPEDTEVSPNKGTLSVMDQFAQEIATCSSNNGNPVPRITWYRNGQRLEVPMEVNQKGYITIRTVREASGLYSLTSTLYLRLHKDDRDANFHCAAHYDLPSGQHGRLDSHTFRLTLHYPTEHVEFWVGSPSTTEGWVREGDAVQLLCQGDGSPSPEYSFFRQQGTQEEQLNVNLKGNLTLERVHRNQSGIYGCRVEDYDADEEVQLVKKLKLHVAYLDPLELSVPEELFVFLNSSSTVVNCSARGLPTPTVRWTKDSVTLADGPMLSLQSVTFDSAGTYTCEASTPTVPLLSRTQSFQLIVQGAPELKPNEIMPKSGNSWTEGDEVMLTCSARGFPEPKLTWSQRGDTPAEPPFEGRGWKSSSLMVKVTSALSREGVSCEASNIHGKKGHVFHFGSVAPQTAQAGVAVMAVAVSVGLLLLVVAAFYCMRRKGRPGCCRRAEKGAPPAREPELSHSGSERPEHTGLLMGGPSGGGRGGSGGFGDEC", "length": 622 }, "evidence": [ { "id": "A0A5G2QRV6", "url": "https://omabrowser.org/oma/group/A0A5G2QRV6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "laminin receptor activity", "id": "GO:0005055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005055", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" }, { "name": "laminin binding", "id": "GO:0043236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "angiogenesis", "id": "GO:0001525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 622, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRV6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 137, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 293 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 316, "end_pos": 318 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 378, "end_pos": 380 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRV9-1", "uniprot_ac": "A0A5G2QRV9", "uniprot_id": "A0A5G2QRV9_PIG", "mass": { "chemical_mass": 60237.0, "monoisotopic_mass": 60237.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF783", "type": "recommended", "evidence": [ { "id": "A0A5G2QRV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ] } ], "protein_names": [ { "name": "Zinc finger protein 212", "type": "synonym", "evidence": [ { "id": "A0A5G2QRV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF783", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9", "locus": { "chromosome": "18", "start_pos": 55558816, "end_pos": 55544886, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031870", "url": "https://www.ensembl.org/id/ENSSSCG00000031870" } ] } } ], "crossref": [ { "id": "A0A5G2QRV9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRV9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031870", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031870", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MCCEARK", "url": "https://omabrowser.org/oma/group/MCCEARK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF269", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF269", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5E4", "url": "https://www.uniprot.org/uniprotkb/A0A287A5E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAAPALAPERDKQPGEERPSTPSPSPQSAAEKDSYLYSTEITLWTVVAAIQAVEKKVDSCLARLLTLEGRTGMAEKKLADCEKTALEFGNQLEGKWAVLGTLLQEYGLLQRRLENMENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSEQEWGKLDEWQKELYKHVMRGNYETLVSLDYAISKPDILSRMERGEEPCPEGTWGREEGRQSEEARPQRPAAGLAPCPEHTLSPVSPAQGEPKEGQTSQHQRDSEARATPPETSAGAGGVVKTEAQSEDEMMPEQLFLGEPPRQTKCRLPKGPRSRPGGSGRPPPGGVPRVRAGDPRPPGAVGEPPRILPRRRERAFPCPDCGQSFRLKINLTIHQRSHVEEEQAEPGRSPTGWGDAHSALEPGEVVVPGPVIRWLPEEPEGRRALVGRRPAAAKLYHCSECLRFFQQRKSLLLHQRLHTGNSQGWPACPYCGKAFRRPSDLFRHQRIHTGERPYRCPQCGRAFNRNHHLAVHMQTHARGQLGPHFPAPSARPGSPGLPRPSRSEEG", "length": 542, "header": "tr|A0A5G2QRV9-1|A0A5G2QRV9_PIG Isoform 1 of Zinc finger protein 212 OS=Sus scrofa OX=9823 GN=ZNF783 PE=3 SV=1 CANONICAL=A0A5G2QRV9-1" }, "isoforms": [ { "isoform_ac": "A0A287A5E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5E4/entry", "sequence": { "sequence": "MAEAAPALAPERDKQPGEERPSTPSPSPQSAAEKDSYLYSTEITLWTVVAAIQAVEKKVDSCLARLLTLEGRTGMAEKKLADCEKTALEFGNQLEGKWAVLGTLLQEYGLLQRRLENMENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSEQEWGKLDEWQKELYKHVMRGNYETLVSLDYAISKPDILSRMERGEEPCPEGTWGREEGRQSEEARPQRPAAGLAPCPEHTLSPVSPAQGEPKEGQTSQHQRDSEARATPPETSAGPPASTSVLSSIKEEEESSDGESRSPPRDVPPGPGPGHLWPCSSPTTHWPGWKSAA", "length": 326, "header": "tr|A0A287A5E4-1|A0A287A5E4_PIG Computationally mapped isoform of Zinc finger protein 212 OS=Sus scrofa OX=9823 GN=ZNF783 PE=4 SV=1 CANONICAL=A0A5G2QRV9-1" }, "locus": { "chromosome": "18", "start_pos": 55556364, "end_pos": 55545024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063847.1", "url": "https://www.ensembl.org/id/ENSSSCT00000063847.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039164.1" } ] } }, { "isoform_ac": "A0A5G2QRV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9/entry", "sequence": { "sequence": "MAEAAPALAPERDKQPGEERPSTPSPSPQSAAEKDSYLYSTEITLWTVVAAIQAVEKKVDSCLARLLTLEGRTGMAEKKLADCEKTALEFGNQLEGKWAVLGTLLQEYGLLQRRLENMENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSEQEWGKLDEWQKELYKHVMRGNYETLVSLDYAISKPDILSRMERGEEPCPEGTWGREEGRQSEEARPQRPAAGLAPCPEHTLSPVSPAQGEPKEGQTSQHQRDSEARATPPETSAGAGGVVKTEAQSEDEMMPEQLFLGEPPRQTKCRLPKGPRSRPGGSGRPPPGGVPRVRAGDPRPPGAVGEPPRILPRRRERAFPCPDCGQSFRLKINLTIHQRSHVEEEQAEPGRSPTGWGDAHSALEPGEVVVPGPVIRWLPEEPEGRRALVGRRPAAAKLYHCSECLRFFQQRKSLLLHQRLHTGNSQGWPACPYCGKAFRRPSDLFRHQRIHTGERPYRCPQCGRAFNRNHHLAVHMQTHARGQLGPHFPAPSARPGSPGLPRPSRSEEG", "length": 542, "header": "tr|A0A5G2QRV9-1|A0A5G2QRV9_PIG Isoform 1 of Zinc finger protein 212 OS=Sus scrofa OX=9823 GN=ZNF783 PE=3 SV=1 CANONICAL=A0A5G2QRV9-1" }, "locus": { "chromosome": "18", "start_pos": 55558813, "end_pos": 55545024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074644.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074644.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066832.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066832.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRV9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 542, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRV9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRV9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 352, "end_pos": 379, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QRV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 145, "end_pos": 216, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QRV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV9" }, { "id": "PS50806", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50806" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB-related", "eco_id": "ECO_0000259", "start_pos": 142, "end_pos": 206, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 366, "end_pos": 368 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRX7-1", "uniprot_ac": "A0A5G2QRX7", "uniprot_id": "A0A5G2QRX7_PIG", "mass": { "chemical_mass": 6134.0, "monoisotopic_mass": 6134.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Zinc finger RING-H2-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QRX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043927", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043927", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF12678", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12678", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLCIDCQANQGASAISEECSIALGVCSHYFHSHCSSQWLPTGQAVSTGPQRVGIPKI", "length": 58, "header": "tr|A0A5G2QRX7-1|A0A5G2QRX7_PIG Isoform 1 of Zinc finger RING-H2-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRX7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7/entry", "sequence": { "sequence": "MDLCIDCQANQGASAISEECSIALGVCSHYFHSHCSSQWLPTGQAVSTGPQRVGIPKI", "length": 58, "header": "tr|A0A5G2QRX7-1|A0A5G2QRX7_PIG Isoform 1 of Zinc finger RING-H2-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QRX7-1" }, "locus": { "chromosome": "2", "start_pos": 11789442, "end_pos": 11789140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084865.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084865.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064777.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064777.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRX7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 58, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRX7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRX7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRX7" }, { "id": "PF12678", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12678" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger RING-H2-type", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 42, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRY4-1", "uniprot_ac": "A0A5G2QRY4", "uniprot_id": "A0A5G2QRY4_PIG", "mass": { "chemical_mass": 34639.0, "monoisotopic_mass": 34639.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LINE-1 type transposase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QRY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QRY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042154", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042154", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NWHEIFQ", "url": "https://omabrowser.org/oma/group/NWHEIFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVNNETDLCSLTDMEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 296, "header": "tr|A0A5G2QRY4-1|A0A5G2QRY4_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QRY4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPKTVNNETDLCSLTDMEFKREIVKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAEMQTELGAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 296, "header": "tr|A0A5G2QRY4-1|A0A5G2QRY4_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QRY4-1" }, "locus": { "chromosome": "9", "start_pos": 95589646, "end_pos": 95588759, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042470.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042470.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055901.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055901.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 296, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRY4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QRY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 293, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QRY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRY4" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS04-1", "uniprot_ac": "A0A5G2QS04", "uniprot_id": "A0A5G2QS04_PIG", "mass": { "chemical_mass": 14880.0, "monoisotopic_mass": 14880.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DNA-repair protein Xrcc1 N-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS04", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048507", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048507", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002706", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002706", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11370", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11370", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11370:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11370:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01834", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01834", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPVKISHVVSFSSQDPKYPVANLLNPDSQRGPWLSCPRDKSGQLKVELQLERAVPIGYIDVGNCGCAFLQIDVGRSSWSLDRPFVTLLPATMLMSLADSKQGKNRSGVRMFKDGEEGRRGRGEGGSEKEGRGMQGG", "length": 137, "header": "tr|A0A5G2QS04-1|A0A5G2QS04_PIG Isoform 1 of DNA-repair protein Xrcc1 N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS04-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04/entry", "sequence": { "sequence": "MAPVKISHVVSFSSQDPKYPVANLLNPDSQRGPWLSCPRDKSGQLKVELQLERAVPIGYIDVGNCGCAFLQIDVGRSSWSLDRPFVTLLPATMLMSLADSKQGKNRSGVRMFKDGEEGRRGRGEGGSEKEGRGMQGG", "length": 137, "header": "tr|A0A5G2QS04-1|A0A5G2QS04_PIG Isoform 1 of DNA-repair protein Xrcc1 N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS04-1" }, "locus": { "chromosome": "9", "start_pos": 6484323, "end_pos": 6481875, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087101.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087101.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061012.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061012.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "damaged DNA binding", "id": "GO:0003684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003684", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "single strand break repair", "id": "GO:0000012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS04" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS04" }, { "id": "PF01834", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01834" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA-repair protein Xrcc1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 114, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSF9-1", "uniprot_ac": "A0A5G2QSF9", "uniprot_id": "A0A5G2QSF9_PIG", "mass": { "chemical_mass": 112175.0, "monoisotopic_mass": 112175.0 }, "refseq": { "ac": "XP_020932702", "name": "importin-11 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932702" }, "gene_names": [ { "name": "IPO11", "type": "recommended", "evidence": [ { "id": "A0A5G2QSF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ] }, { "name": "IPO11", "type": "synonym", "evidence": [ { "id": "XP_020932702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932702" } ] } ], "protein_names": [ { "name": "Importin-11", "type": "recommended", "evidence": [ { "id": "A0A5G2QSF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9/entry#names_and_taxonomy" } ] }, { "name": "Ran-binding protein 11", "type": "synonym", "evidence": [ { "id": "A0A5G2QSF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9/entry#names_and_taxonomy" } ] }, { "name": "importin-11 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020932702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932702" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IPO11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9", "locus": { "chromosome": "16", "start_pos": 41522669, "end_pos": 41121144, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016938", "url": "https://www.ensembl.org/id/ENSSSCG00000016938" } ] } } ], "crossref": [ { "id": "A0A5G2QSF9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016938", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016938", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525544", "url": "https://www.ncbi.nlm.nih.gov/gene/100525544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525544", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFHYVFH", "url": "https://omabrowser.org/oma/group/SFHYVFH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QSF9", "url": "https://www.orthodb.org/?gene=A0A5G2QSF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10997:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10997:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020932702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8S9", "url": "https://www.uniprot.org/uniprotkb/A0A287A8S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACP5", "url": "https://www.uniprot.org/uniprotkb/A0A287ACP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URT2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS06-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JWB4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JWB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JWB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JWB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1K002", "url": "https://www.uniprot.org/uniprotkb/A0A8D1K002", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1K002-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1K002-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1R5U2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R5U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1R5U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R5U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1WHJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1WHJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1WHJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1WHJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975, "header": "tr|A0A5G2QSF9-1|A0A5G2QSF9_PIG Isoform 1 of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "isoforms": [ { "isoform_ac": "A0A287A8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8S9/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 936, "header": "tr|A0A287A8S9-1|A0A287A8S9_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=2 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334165, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038152.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038152.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040394.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040394.2" } ] } }, { "isoform_ac": "A0A287ACP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACP5/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMVSERSDLLFCRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVLFFNCSSPVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMSTRWVCGDLRTRLLLEIILITVFIVL", "length": 937, "header": "tr|A0A287ACP5-1|A0A287ACP5_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=2 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41522666, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049001.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049001.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041767.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041767.2" } ] } }, { "isoform_ac": "A0A4X1URT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URT2/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMVSERSDLLFCRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVLFFNCSSPVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 965, "header": "tr|A0A4X1URT2-1|A0A4X1URT2_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334165, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075912.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075912.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061762.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061762.1" } ] } }, { "isoform_ac": "A0A5G2QS06-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS06/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMVSERSDLLFCRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVLFFNCSSPVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMVRYKSNP", "length": 918, "header": "tr|A0A5G2QS06-1|A0A5G2QSF9_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=2 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41324106, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080839.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080839.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066889.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066889.2" } ] } }, { "isoform_ac": "A0A5G2QSF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975, "header": "tr|A0A5G2QSF9-1|A0A5G2QSF9_PIG Isoform 1 of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334165, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075448.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075448.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067752.1" } ] } }, { "isoform_ac": "A0A8D1JWB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JWB4/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 935, "header": "tr|A0A8D1JWB4-1|A0A8D1JWB4_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334165, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040024.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040024.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042254.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042254.2" } ] } }, { "isoform_ac": "A0A8D1K002-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1K002/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQELLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 907, "header": "tr|A0A8D1K002-1|A0A8D1K002_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334165, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018446.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018446.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017946.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017946.4" } ] } }, { "isoform_ac": "A0A8D1R5U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R5U2/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDWP", "length": 895, "header": "tr|A0A8D1R5U2-1|A0A8D1R5U2_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=3 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41334010, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042522.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042522.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051659.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051659.2" } ] } }, { "isoform_ac": "A0A8D1WHJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1WHJ8/entry", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKCLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRERLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVVHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKSTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLEEITSEGQVQVLKVVENALKVNPVLGPQMFQPILPCVFTGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMARTFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMNIEVPRVGVKSEMQPTPQ", "length": 939, "header": "tr|A0A8D1WHJ8-1|A0A8D1WHJ8_PIG Computationally mapped isoform of Importin-11 OS=Sus scrofa OX=9823 GN=IPO11 PE=1 SV=1 CANONICAL=A0A5G2QSF9-1" }, "locus": { "chromosome": "16", "start_pos": 41332034, "end_pos": 41145230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053964.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053964.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037820.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037820.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS06", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525544", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525544", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286Y8U4-1", "protein_name": "Importin-11", "gene_name": "ipo11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDIQSASSVVLQALTQATSQDTAVLKPAEEQLRQWETQPGFYSVLLSIFNNHLLDVNVRWLAVLYFKNGIDRYWRRVAPHALSEEEKSSLRAGLITNFNEPVNQIATQIAVLIAKVARLDCPRQWPELIPILLESVKVQDSLQQHRALLTFYHVTKTLASKRLATDRRLFQDLASSIYSFACSLWNHHTDSFLQQIYSGDQQTALSSLERTLLSLKVLRKLTVHGFVDPQNNMEVMGFLNAVFERLKQFLECCRQVGPGSPCREKLEKTIILFTKVLLDFLEYHPCPFIPLIQRSLEFAVSYVFTEAGEGVVFERFIVQCMNLIKMIVKNDAYKPAKNIEDSKPESLEAHRIKTAFFTHQTLTEIGRRLVSKYFLLTEEELTMWEEDPESFAVEETGGDSWKYSLRPSTEVLFLDIFHNYSQTLTPVLLEMVQNLQGPSNVEDPVQMLMKDAVYNAVGLAAYELFDNVDFDQWFKNQLLGELQVSHNRYKLIRRRVIWLIGQWISVKFKPELRPLLYEVILSLMQDPDLVVRIETATTLKLAVDDFEFRTEQFLPYLESIFSLLFQLLQQVNECDTKMQVLHVISCVIERVSIQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGAESKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPAITPELLRIFQNMSPLLELSSENVRTCFQIINAYIYLSATDFLQNYAEALCRSFCELLSDITNEGQVQVLKVVEIAIKVSPILGSHMFQPLLPSVIRGIVEGERYPVVMSTYLGVTGRILLQNSGFFTSLLTQMAVEFNQEADQLLGSMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETATFKDCMLMSHFEEPKLTDDEEPPTEQDKRRKLLALEDPVHSVSLQQFVYEKLKAQQMLMGDQGFQALMETVDTEIVRQLQEFIQGM", "length": 975 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8C2QGD9-1", "protein_name": "Importin-11", "gene_name": "Ipo11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLHSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQQVSSGNESAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNACRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETIEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKNQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLPEITTEGQVQVLKVVESALKVNPVLGPQMFQPILPYVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNKMAHEFNQEMDQLLGNVIEMWVDRVDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSHHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6APG6-1", "protein_name": "Importin-11", "gene_name": "ENSRNOG00000062438", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQQVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPRLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNIQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENTLKVNPVLGPQMFQRILPYVFRGVIEGERYPVVMSIYLAVMGRVLLQNASFFSSLLNEMGHEFNQEMDQLLGNVIEMWVDRMDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSHHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YDA3-1", "protein_name": "Importin-11", "gene_name": "IPO11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTFIGKTTERCACVNELRLVVTSWFYLLAAEVLVAVCSVCCASHKIFMDLNSASSIVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHALDVNVRWLAVLYFKNGIDRYWRRVAPHALSEEEKTTLRAGLIANFNEPVNQIATQISVLIAKVARVDCPRQWPELIPTLLESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYSFACSLWNHHTDTFLQQACTGNEAAASNSLERTLLSLKVLRKLTVHGFVEPHRSVEVMGFLHALFERLKQFLECSRNIRTGNVCRDRLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFAVSYVFTEAGEGVVFERFIVQCMNLIKMIVKNYAYKPSKYIEDSSPETLEAHKIKTAFFTYPTLMEICRRLVTHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMVHSLQGTTNLEDTSAILIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLAELQVSHNRYKPIRRRVIWLIGQWISVKFKSDLRPMLYEAIRNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLESMFTLLFQLLQEVTECDTKMHVLHVLSCVNERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGAESKNLYPFLLPIIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLKNCFKIINAYVFLSSTEFLQTYAVDLCRSFCELLKDITTEGQVQALKVVENVLKVNPILGPQMFQPLLPSVFRGIIDGERYPMLMSTYLGVIGRVLLQNTSFFSLLLNQMACESGQELDQILGNMIEMWVDRMDNITQPERRKLSALALISLLPSLNSVIQDKFCGIIHVTLEGLYDVMTEDPETGTYKDCLLLSHFEEPKVTEDEEPPTEQDKRKKLLALKDPVHTVSLQQFVYEKLKAQQELLGEQGFHALMETVDTEVVAQLQEFLQGF", "length": 1022 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F4IYK6-1", "protein_name": "ARM repeat superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MALSASDLPAMYTLLANSMSGDETVRRPAEAALSLSESRPGFCSCLMEVIASKDLVSHVDVRLMASVYFKNSINRHWKSRRNSWSMSNEEKSHLRQKLLSHLREENYQIAEMLAVLISKIARFDYPREWPDLFSVLAQQLHSADVLASHRIFLILFRTLKELSTKRLTADQKTFAEISSQFFDFSWHLWQTDVQTILHGFSTMVQSYGSNSAEQHHDELFLTCERWFLCLKIVRQLIISGFLSDANNIQEIQPVKEVSPALLNAAQSFLPYYSSFQNRDPKFWEFVKKACVKLMKVLGAIQSRHPFSFGDKCALPVVVDFCLNKITDPEQALLPFEDFFIQCMVMVKSVLECKEYKPSRTGRVMDDNGDTFEQRKKNASNTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPESFHHEQDMIQWTEKLRPCAEALYMVLFENYSQLLGPIVVSILQEAMNNCPPSVTEITPALLLKDAAYAATAYVYYELSNYLNFRDWFNGALSLELSNDHPNRRIIHRKVAMILGHWVSEIKDDTKRAVYCALIKLLQDNDLAVKLAASRSLCLHVEDANFSEQSFLDLLPICWDSCFKMVEVVQEFDSKVQILNLISTLIGHVSEVIPYAQKLVQFFQKVWEESSGESLLQIQLLVALRNFVIALGYQSPICYSILLPILQKGIDINSPDSLNLLEDSMALWETTLSYAPMMVPQLLALFPYMVEIIERSFDHLQVAVSIMDSYIILDGGEFLNMHASSVAKILDLIVGNVNDKGLLSILPVIDILVQCFPVEVPPLISSCLQKLVIICLSGGDDRDPSKTAVKVSSAAILARILVMNTTYLAQLTSDSSLSVLLQQAGVPVEDNILLCLIDIWLDKVDHASPMQQKTFGLALSIILTLRMPQVLDKLDLILSTCTSVILGENKDLTEEESSGDMSSSRSQGEETPPSKELRKSQIKVSDPIYQMSLENSTRENLQTCSTLHGDAFNSAISRMHPSALAQVKQALKLP", "length": 1010 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q02932-1", "protein_name": "Importin beta-like protein KAP120", "gene_name": "KAP120", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MASSLNELNLVQVLEQASNPQHIRSDVQKLAEQQLRQWETQAGFHYLLQSIYLNLSNSLQIRWLAVIQFKNGVDKYWRSTRINAIPKDEKASIRGRLFEMIDEQNNQLCIQNAQASARIARLDFPVEWPTLFEDLENLLNDEIIRKDSVKIYNILMHINQIVKVLGTARIGRCRPAMQSKVPLILPLIVRIYLQSFEEWTTSSNLNYEDLSSLQVSYLALKVLRRIICEGYDRPQTDQSVCDFIKLSVSHFEMLISNHENFKKFDIYEKFIKCLGKLYFNLVTGSPANFILLPCSTQILITYTRLIFDKAPKVYRENSDVTGDFWEQTAIRGLLILKRVINFIHKKGAITLKARSDKLTIDASINKINTEFLNENLITRLVDTLMEWYLRLRPTELENWFMDPEEWINEQMATSYEYQIRPCAENVFQDLMNTFSELLVPYLLKKIENDASKLSNSLDDFLRKDAIYASFQLSASAVSEMVDFDRLLIQVFLPEATNTNISGDELRIIRRRVALIINEWSTVKCSEESKSLCYKLFTNFLTDEDDKVVLLTTVQTVRTMVDDWNFNKDTFQPFLTENVHLLLRKILPSVSLTETRLYVLNTLSDIIIQTKPLISRDLLVEILQIIPNLWEIATNNASEAILANALLRLLRNLVSSLGSQSHLTWDIAIPVVALACDPSSMQYQLLSEDGYELWGMLLQNFSSHDQEFDDKFVELVPFLKYGIETHTEILPTLLEIIKSYALILNPVDFFSNNTFQDIFKQMSKYLLKLREDSFQLVLEIWEILILSNESDYENLLLQKFYETGVLSALFDAIFLEEAPSSYLCSQIIQIIARISYVNPDALMTFLATYHDNLPTSNENARMPESIRKIVSKDQTYDSVVNKLLTGWIVCFRDIFDPKFKKVHILGISSLLRTGLVPILTEFSSIASLWIEMLEEINETNRGDCEKYHLNDIVTEQSIAFHPLTAEQLRYHQLCKNNDPVHNISLKDFISQSMEYLESHLGVERYQEFLKTINPSLLENLQMFLSIQPQEARP", "length": 1032 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WF0-1", "protein_name": "Importin N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKEIVAQLLQATLSSDHTRVQAESQVQLLTREKGFSSILLEIFGDQSIDKSIRNLSIVLFKNIITNNWRRKDNTLFSEEEKQDYRNRVLLLLNNPNETCKNGVDILAGVIGTMARVDFPSNWPNLLTNLLELFEKSSSEQIKIVSLKTIKFVVKELASRRFVIDRTFFSQFSNTIFNYFIQIWRSGVKRLIELMIEGGNLAQHESFFILVYYVSKILRRVVEYGYTDYQNSPEICQYFSDIFTGLPEILKLRTRVTNPKILELVDKFIYINQKTIIKSQLQNPLTFINLLLPSLRFFAGQCLYYNPHDELKIEWNTTEDYQSVMTQSLNFLKQVIDCSSYQGDYLDSETDEKQSISNLAIKSGGKINGNGSIQIAQQTIKQFFNKELLSELLKALVSHYLIINREEVERWEDSPEEYIQELQVNDSVYELKPSAYNLFILLMRHFHQDSVSIVVSMLEFVTSPSFNTELTSEKICLKEACYMTIGLGYHDLMDIVNFSQVFISIFVPELHSADERFKIIKRRILWLVSYWVGKIPDQYKESVVKLLLEFLKNSDIVIALTALDALKAYIDDFNFDHHSYQPYLKETLESVIGLFSRSTNETTKSNLLSALASIFVKFNESIKPFSTVILQLFQHLWNGGKEQPIVKSAVLRSFAFFLQALNSDPADFYSLLFPIIEFSISQEDEKVYLLEDGLELWYRTMVLVPTLSQPQQPLIQMFKHWFTIIAQSLENSEICFKILDTYLLLGQIDFLKIYGAELSSTLYDIIGDLGEEYTELIVSAIMRIIQVVPNPQDSITLLIEQCLFKILSLIISRKETSTLVLIEYFSIFSRIMTMNPLSFFQLFDRYPLELLDKDGEYYDPSNFNNDNNDDDDDDDDGQSKIKEMPQNKSQLLQQFFEIYFDKIDSTSSSDQRKLIAIGLSNLLAIPREEVYPQIGEIITNVVGIRADISDITHDDIYCNDGDEVSGVQIQSDHIFQVDPLTTIDLSTYLYQKIQECSNLFGTENFQKAIVNVHPSILSLAIPPKN", "length": 1025 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K2V6-1", "protein_name": "Importin-11", "gene_name": "Ipo11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQHVSSGNEAAVLSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLEGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENALKVNPVLGPQMFQRILPCVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNEMGHEFNQEMDQLLGNVIEMWVDRMDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSQHEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UI26-1", "protein_name": "Importin-11", "gene_name": "IPO11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQEVSSGNEAAILSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNALLIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLPELQVIHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNMQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLKEITTEGQVQVLKVVENALKVNPILGPQMFQPILPYVFKGIIEGERYPVVMSTYLGVMGRVLLQNTSFFSSLLNEMAHKFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQLQEFLQGF", "length": 975 }, "evidence": [ { "id": "A0A5G2QSF9", "url": "https://omabrowser.org/oma/group/A0A5G2QSF9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" }, { "name": "nuclear import signal receptor activity", "id": "GO:0061608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061608", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 421, "end_pos": 423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 691, "end_pos": 693, "annotation": "n_glycosylation_sequon" }, { "start_pos": 802, "end_pos": 804, "annotation": "n_glycosylation_sequon" }, { "start_pos": 838, "end_pos": 840, "annotation": "n_glycosylation_sequon" }, { "start_pos": 872, "end_pos": 874, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 975, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF9" }, { "id": "PS50166", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50166" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Importin N-terminal", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 100, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 421, "end_pos": 423 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 691, "end_pos": 693 }, { "start_pos": 802, "end_pos": 804 }, { "start_pos": 838, "end_pos": 840 }, { "start_pos": 872, "end_pos": 874 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS13-1", "uniprot_ac": "A0A5G2QS13", "uniprot_id": "A0A5G2QS13_PIG", "mass": { "chemical_mass": 26732.0, "monoisotopic_mass": 26732.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Reverse transcriptase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QS13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS13", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS13", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045461", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045461", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR31635", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31635", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31635:SF196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31635:SF196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QS13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KLSEIKISDTILYIENPKDSNQKLLELINKFSRVAGYKINIQKSVTFLYKNNEILKKEHRNKIPFKIAPQKIKYLGIHLTKEVKDLYAKNYKTFIKEIKEDVKKWKDTPCSWAGKINSVKMAILPKAIDRFNAIPIKVHMTFFTELEQTIQKCIWNHKRPRIAKAILRNKNQAGGIALPDFRQYYKATVLKTVWYWYQNRQTDRPMEQNREPRNKPRHLWSMNL", "length": 224, "header": "tr|A0A5G2QS13-1|A0A5G2QS13_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS13-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13/entry", "sequence": { "sequence": "KLSEIKISDTILYIENPKDSNQKLLELINKFSRVAGYKINIQKSVTFLYKNNEILKKEHRNKIPFKIAPQKIKYLGIHLTKEVKDLYAKNYKTFIKEIKEDVKKWKDTPCSWAGKINSVKMAILPKAIDRFNAIPIKVHMTFFTELEQTIQKCIWNHKRPRIAKAILRNKNQAGGIALPDFRQYYKATVLKTVWYWYQNRQTDRPMEQNREPRNKPRHLWSMNL", "length": 224, "header": "tr|A0A5G2QS13-1|A0A5G2QS13_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS13-1" }, "locus": { "chromosome": "1", "start_pos": 44506493, "end_pos": 44505822, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073444.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073444.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS13-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 224, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS13-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS13" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS16-1", "uniprot_ac": "A0A5G2QS16", "uniprot_id": "A0A5G2QS16_PIG", "mass": { "chemical_mass": 31431.0, "monoisotopic_mass": 31431.0 }, "refseq": {}, "gene_names": [ { "name": "GSG1L2", "type": "recommended", "evidence": [ { "id": "A0A5G2QS16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16" } ] } ], "protein_names": [ { "name": "GSG1 like 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QS16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GSG1L2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16", "locus": { "chromosome": "12", "start_pos": 54665268, "end_pos": 54677502, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000043177", "url": "https://www.ensembl.org/id/ENSSSCG00000043177" } ] } } ], "crossref": [ { "id": "A0A5G2QS16", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS16", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR012478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QS16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRARWQQALALLPVCLALTFSLTAVGSSYWCEGTRRVAKPLCQGHPGGSHCIHYSSGSGDNGSQAVQYIWEMGDDKFIQRRFHVGLWQSCEQSLGSADERCRSFQSVVPAEEQGVLWLSIGAEVLNILLTLTSTILLGSRVSYHSSGFHWLKVDASVAILMALAGLLAMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCMVVSVMATSRYTAARLEFAEKKSMQGSQHSQHDFQEPKASEGVWETDAAPGLAGRALVSVSGHLPSDALGKVSMC", "length": 287, "header": "tr|A0A5G2QS16-1|A0A5G2QS16_PIG Isoform 1 of GSG1 like 2 OS=Sus scrofa OX=9823 GN=GSG1L2 PE=3 SV=1 CANONICAL=A0A5G2QS16-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16/entry", "sequence": { "sequence": "MDRARWQQALALLPVCLALTFSLTAVGSSYWCEGTRRVAKPLCQGHPGGSHCIHYSSGSGDNGSQAVQYIWEMGDDKFIQRRFHVGLWQSCEQSLGSADERCRSFQSVVPAEEQGVLWLSIGAEVLNILLTLTSTILLGSRVSYHSSGFHWLKVDASVAILMALAGLLAMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFALCMVVSVMATSRYTAARLEFAEKKSMQGSQHSQHDFQEPKASEGVWETDAAPGLAGRALVSVSGHLPSDALGKVSMC", "length": 287, "header": "tr|A0A5G2QS16-1|A0A5G2QS16_PIG Isoform 1 of GSG1 like 2 OS=Sus scrofa OX=9823 GN=GSG1L2 PE=3 SV=1 CANONICAL=A0A5G2QS16-1" }, "locus": { "chromosome": "12", "start_pos": 54677502, "end_pos": 54665271, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080110.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080110.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067715.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067715.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 287, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS16" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS38-1", "uniprot_ac": "A0A5G2QS38", "uniprot_id": "A0A5G2QS38_PIG", "mass": { "chemical_mass": 34164.0, "monoisotopic_mass": 34164.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS38", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS38", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11334:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11334:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADALLNGSSFRSGGPGAASTPEGHTHAVREALSALVMFTCVGGIVGNSLVVWLLGFRRQRGTVGIYLLHLAVADLLFLLCSVALTVLNSRSPGAQLVHLAVRGAKYLAYVAGLSLLTAASTQPCLSSLFPTWCRVRWRPHLSTLVCAVLWLLALLLTMLALCFHDEAGRPYLRPGSPVDIIFPVVPLAGFTPSMALSSMALCVHVRRSSWPPPRRPPQLYVAILASVLVCLICTLPLGISGFLLYWLDPPQHRETLFEHVTHLSLSVSSSAKPGIYFLLGSRGHPSLWGPLGAVLSQALQEPELAVGAPPSTSTDQVGI", "length": 320, "header": "tr|A0A5G2QS38-1|A0A5G2QS38_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QS38-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38/entry", "sequence": { "sequence": "MADALLNGSSFRSGGPGAASTPEGHTHAVREALSALVMFTCVGGIVGNSLVVWLLGFRRQRGTVGIYLLHLAVADLLFLLCSVALTVLNSRSPGAQLVHLAVRGAKYLAYVAGLSLLTAASTQPCLSSLFPTWCRVRWRPHLSTLVCAVLWLLALLLTMLALCFHDEAGRPYLRPGSPVDIIFPVVPLAGFTPSMALSSMALCVHVRRSSWPPPRRPPQLYVAILASVLVCLICTLPLGISGFLLYWLDPPQHRETLFEHVTHLSLSVSSSAKPGIYFLLGSRGHPSLWGPLGAVLSQALQEPELAVGAPPSTSTDQVGI", "length": 320, "header": "tr|A0A5G2QS38-1|A0A5G2QS38_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QS38-1" }, "locus": { "chromosome": "2", "start_pos": 4156190, "end_pos": 4155231, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080906.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080906.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067745.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067745.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 320, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS38" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 277, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS43-1", "uniprot_ac": "A0A5G2QS43", "uniprot_id": "A0A5G2QS43_PIG", "mass": { "chemical_mass": 9587.0, "monoisotopic_mass": 9587.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QS43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS43", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042518", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042518", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QS43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFIAALFTIAKTWKQPKCLLTDNWIRKMWYIYTMEYYSAIKKNKIMPFAATWMELEILILSEVSQKEKDKYHMVSLISGI", "length": 80, "header": "tr|A0A5G2QS43-1|A0A5G2QS43_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS43-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43/entry", "sequence": { "sequence": "MFIAALFTIAKTWKQPKCLLTDNWIRKMWYIYTMEYYSAIKKNKIMPFAATWMELEILILSEVSQKEKDKYHMVSLISGI", "length": 80, "header": "tr|A0A5G2QS43-1|A0A5G2QS43_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS43-1" }, "locus": { "chromosome": "6", "start_pos": 143046400, "end_pos": 143046161, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088729.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088729.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067617.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 80, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS43" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS66-1", "uniprot_ac": "A0A5G2QS66", "uniprot_id": "A0A5G2QS66_PIG", "mass": { "chemical_mass": 25336.0, "monoisotopic_mass": 25336.0 }, "refseq": {}, "gene_names": [ { "name": "HAGHL", "type": "recommended", "evidence": [ { "id": "A0A5G2QS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ] } ], "protein_names": [ { "name": "Hydroxyacylglutathione hydrolase like", "type": "synonym", "evidence": [ { "id": "A0A5G2QS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HAGHL", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66", "locus": { "chromosome": "3", "start_pos": 41046171, "end_pos": 41053464, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008003", "url": "https://www.ensembl.org/id/ENSSSCG00000008003" } ] } } ], "crossref": [ { "id": "A0A5G2QS66", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS66", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07723", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07723", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11935", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11935", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11935:SF77", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11935:SF77", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16123", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16123", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVKVIPVLEDNYMYLVIEEHTREALAVDVAVPKRLLEIVGREGVSLTTVLTTHHHWDHARGNAELARLLPGLEVLGADERICALTRRLVHGEELQFGAIHVRCLLTPGHTSGHMSYFLWEDKCPDPPAVFSGDALSVAGCGSRLESTAQLMYQSLVETLGTLPAETKVFCGHEHTVGNLEFAQKVEPCNDHVKAKLLWAKKRDEDDVPTVPSTLGEERLYNPFLRVA", "length": 228, "header": "tr|A0A5G2QS66-1|A0A5G2QS66_PIG Isoform 1 of Hydroxyacylglutathione hydrolase like OS=Sus scrofa OX=9823 GN=HAGHL PE=3 SV=1 CANONICAL=A0A5G2QS66-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66/entry", "sequence": { "sequence": "MKVKVIPVLEDNYMYLVIEEHTREALAVDVAVPKRLLEIVGREGVSLTTVLTTHHHWDHARGNAELARLLPGLEVLGADERICALTRRLVHGEELQFGAIHVRCLLTPGHTSGHMSYFLWEDKCPDPPAVFSGDALSVAGCGSRLESTAQLMYQSLVETLGTLPAETKVFCGHEHTVGNLEFAQKVEPCNDHVKAKLLWAKKRDEDDVPTVPSTLGEERLYNPFLRVA", "length": 228, "header": "tr|A0A5G2QS66-1|A0A5G2QS66_PIG Isoform 1 of Hydroxyacylglutathione hydrolase like OS=Sus scrofa OX=9823 GN=HAGHL PE=3 SV=1 CANONICAL=A0A5G2QS66-1" }, "locus": { "chromosome": "3", "start_pos": 41052883, "end_pos": 41050707, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078755.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078755.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066964.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hydroxyacylglutathione hydrolase activity", "id": "GO:0004416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004416", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione", "id": "GO:0019243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019243", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS66" }, { "id": "SM00849", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00849" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Metallo-beta-lactamase", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 173, "start_aa": "Asp", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS69-1", "uniprot_ac": "A0A5G2QS69", "uniprot_id": "A0A5G2QS69_PIG", "mass": { "chemical_mass": 22346.0, "monoisotopic_mass": 22346.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QS69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS69", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS69", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047512", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047512", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QS69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDREKRRGFSISRLRHKTSSSPGPGKTVLRRGGVGQNPTRPPRCPQQSEGSWTSSLTSNAAWGSSSIRASEKLRKNLPGKQRLQQGALTKENRGCWVLINSKEKVKHRSSWLLEATEPFVTRDVIPRYVFFSGSEFRMARRIGGCRHLGAGNPEGRGLSGSRSASAEGRAEEAFWFRGGWTVPWAPGLRRPKVVFLVGFPD", "length": 201, "header": "tr|A0A5G2QS69-1|A0A5G2QS69_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS69-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69/entry", "sequence": { "sequence": "MDREKRRGFSISRLRHKTSSSPGPGKTVLRRGGVGQNPTRPPRCPQQSEGSWTSSLTSNAAWGSSSIRASEKLRKNLPGKQRLQQGALTKENRGCWVLINSKEKVKHRSSWLLEATEPFVTRDVIPRYVFFSGSEFRMARRIGGCRHLGAGNPEGRGLSGSRSASAEGRAEEAFWFRGGWTVPWAPGLRRPKVVFLVGFPD", "length": 201, "header": "tr|A0A5G2QS69-1|A0A5G2QS69_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS69-1" }, "locus": { "chromosome": "11", "start_pos": 25906473, "end_pos": 25905369, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074773.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074773.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064852.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064852.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS69-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 201, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS69-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS69" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS74-1", "uniprot_ac": "A0A5G2QS74", "uniprot_id": "A0A5G2QS74_PIG", "mass": { "chemical_mass": 11381.0, "monoisotopic_mass": 11381.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QS74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS74", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS74", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS74", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044269", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044269", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QS74", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS74-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVLICISVIIRDVEHSFMCLLAICISSLEKCLLMSFAHFSIGLLAFLLLSCKSCLYILEIKPLSVPSFEIIFSHSVSCLFCLFVCLFVFWFSLLCKSLSV", "length": 101, "header": "tr|A0A5G2QS74-1|A0A5G2QS74_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS74-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS74-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74/entry", "sequence": { "sequence": "MVVLICISVIIRDVEHSFMCLLAICISSLEKCLLMSFAHFSIGLLAFLLLSCKSCLYILEIKPLSVPSFEIIFSHSVSCLFCLFVCLFVFWFSLLCKSLSV", "length": 101, "header": "tr|A0A5G2QS74-1|A0A5G2QS74_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS74-1" }, "locus": { "chromosome": "1", "start_pos": 58222380, "end_pos": 58222078, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073298.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073298.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064857.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064857.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS74", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS74" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS74-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS74-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS74" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS81-1", "uniprot_ac": "A0A5G2QS81", "uniprot_id": "A0A5G2QS81_PIG", "mass": { "chemical_mass": 14464.0, "monoisotopic_mass": 14464.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Phosphoribosylformylglycinamidine synthase N-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QS81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS81", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049011", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049011", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR036604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040707", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040707", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10099:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10099:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSVLHFFVRPSGHEGAASAYTQRKLRGELPALQGIKTELCYNVNWTAESFPSAEEMKKLTWLFGCPLLLDDVAQESWLLPGSNDLLLEVGPRLNISTPTSTNIVSVCQVAGLGAVDRVETTRRYLLSVWP", "length": 131, "header": "tr|A0A5G2QS81-1|A0A5G2QS81_PIG Isoform 1 of Phosphoribosylformylglycinamidine synthase N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS81-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81/entry", "sequence": { "sequence": "MSSVLHFFVRPSGHEGAASAYTQRKLRGELPALQGIKTELCYNVNWTAESFPSAEEMKKLTWLFGCPLLLDDVAQESWLLPGSNDLLLEVGPRLNISTPTSTNIVSVCQVAGLGAVDRVETTRRYLLSVWP", "length": 131, "header": "tr|A0A5G2QS81-1|A0A5G2QS81_PIG Isoform 1 of Phosphoribosylformylglycinamidine synthase N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS81-1" }, "locus": { "chromosome": "12", "start_pos": 53463399, "end_pos": 53461698, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083932.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083932.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061052.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061052.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" } ], "pmid": "" }, { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "purine nucleotide biosynthetic process", "id": "GO:0006164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006164", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QS81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS81" }, { "id": "PF18076", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphoribosylformylglycinamidine synthase N-terminal", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 129, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS98-1", "uniprot_ac": "A0A5G2QS98", "uniprot_id": "A0A5G2QS98_PIG", "mass": { "chemical_mass": 20619.0, "monoisotopic_mass": 20619.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98", "locus": {} } ], "crossref": [ { "id": "A0A5G2QS98", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047552", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047552", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QS98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLRFPPRYLPNFTNPNRPIPSNTLYIRYNNSLLISNTYLLRRKLWMNYSLPTCKWSINVLHLPIHPCRPRPILRILYIPRNMKHRSNSIIYCYSNSLHGLRPALRTNIILRSYCHHKPIISYSLCWNKPCRMNLRSPIYDTSPTNPSTILTRLTRRSRQLYPSKPAKHTTPH", "length": 173, "header": "tr|A0A5G2QS98-1|A0A5G2QS98_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS98-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QS98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98/entry", "sequence": { "sequence": "MKLRFPPRYLPNFTNPNRPIPSNTLYIRYNNSLLISNTYLLRRKLWMNYSLPTCKWSINVLHLPIHPCRPRPILRILYIPRNMKHRSNSIIYCYSNSLHGLRPALRTNIILRSYCHHKPIISYSLCWNKPCRMNLRSPIYDTSPTNPSTILTRLTRRSRQLYPSKPAKHTTPH", "length": 173, "header": "tr|A0A5G2QS98-1|A0A5G2QS98_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QS98-1" }, "locus": { "chromosome": "9", "start_pos": 76360884, "end_pos": 76360171, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076900.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076900.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067682.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067682.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 173, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS98" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSC1-1", "uniprot_ac": "A0A5G2QSC1", "uniprot_id": "A0A5G2QSC1_PIG", "mass": { "chemical_mass": 12002.0, "monoisotopic_mass": 12002.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QSC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLMHCWKGCGEKETILHCWWECKLVQPLWKSEWRFLRKRNIELPYYLAIPLLGIYPDENAIRKDTCQSSHSGAVETNLTRNHEVAGSIPGLAQWVKDPVLP", "length": 103, "header": "tr|A0A5G2QSC1-1|A0A5G2QSC1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSC1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1/entry", "sequence": { "sequence": "MKKLMHCWKGCGEKETILHCWWECKLVQPLWKSEWRFLRKRNIELPYYLAIPLLGIYPDENAIRKDTCQSSHSGAVETNLTRNHEVAGSIPGLAQWVKDPVLP", "length": 103, "header": "tr|A0A5G2QSC1-1|A0A5G2QSC1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSC1-1" }, "locus": { "chromosome": "13", "start_pos": 192765095, "end_pos": 192764787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082127.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082127.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067707.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067707.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSC1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 103, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSC1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSC1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSD3-1", "uniprot_ac": "A0A5G2QSD3", "uniprot_id": "A0A5G2QSD3_PIG", "mass": { "chemical_mass": 29002.0, "monoisotopic_mass": 29002.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045734", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045734", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGNHHWVLTEQPRLENSPGSSVGRSWEGAGGAGEVGCSDRQTTLLFQTSQKSCEPEPRVSPSQNLLEEEDSEPPSQQLQATRSRGSEPLSNLDLSKGPLEALEYLDRGGDQRIREAPCLEDSGPASGFFPYYRSKEESFPSLTLPDSLCAGSCDPPIRMEAQARCCCCCCRMTVSDKCSTGLADPDLRSGCSPSPTCCPILLVSAGHSRDCGLDFPLSSDGAFRGQALHASGFVPYYRTPEEGLHTSPGPPISPAWGQEPTGKLPGPGAASP", "length": 273, "header": "tr|A0A5G2QSD3-1|A0A5G2QSD3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QSD3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3/entry", "sequence": { "sequence": "MAGNHHWVLTEQPRLENSPGSSVGRSWEGAGGAGEVGCSDRQTTLLFQTSQKSCEPEPRVSPSQNLLEEEDSEPPSQQLQATRSRGSEPLSNLDLSKGPLEALEYLDRGGDQRIREAPCLEDSGPASGFFPYYRSKEESFPSLTLPDSLCAGSCDPPIRMEAQARCCCCCCRMTVSDKCSTGLADPDLRSGCSPSPTCCPILLVSAGHSRDCGLDFPLSSDGAFRGQALHASGFVPYYRTPEEGLHTSPGPPISPAWGQEPTGKLPGPGAASP", "length": 273, "header": "tr|A0A5G2QSD3-1|A0A5G2QSD3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QSD3-1" }, "locus": { "chromosome": "2", "start_pos": 137976617, "end_pos": 137974886, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085200.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085200.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067722.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067722.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSD3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 273, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSD3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSD3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSD9-1", "uniprot_ac": "A0A5G2QSD9", "uniprot_id": "A0A5G2QSD9_PIG", "mass": { "chemical_mass": 14498.0, "monoisotopic_mass": 14498.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041502", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041502", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKWFTCYGEQFAGTPETSTEHDPEVPPLGVCPGELKAGTQTDTWMPVVVVASFTTAKGWKQPECPSADRWMNKMWCVLKMENYLAIRRNGVLMHAVTSVNLENMLSDEARHKRTHVRFHFCKVLRIG", "length": 127, "header": "tr|A0A5G2QSD9-1|A0A5G2QSD9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSD9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9/entry", "sequence": { "sequence": "MKWFTCYGEQFAGTPETSTEHDPEVPPLGVCPGELKAGTQTDTWMPVVVVASFTTAKGWKQPECPSADRWMNKMWCVLKMENYLAIRRNGVLMHAVTSVNLENMLSDEARHKRTHVRFHFCKVLRIG", "length": 127, "header": "tr|A0A5G2QSD9-1|A0A5G2QSD9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSD9-1" }, "locus": { "chromosome": "5", "start_pos": 3792432, "end_pos": 3792052, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072530.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072530.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061108.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSD9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 127, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSD9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSD9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSF0-1", "uniprot_ac": "A0A5G2QSF0", "uniprot_id": "A0A5G2QSF0_PIG", "mass": { "chemical_mass": 26274.0, "monoisotopic_mass": 26274.0 }, "refseq": { "ac": "NP_001230211", "name": "zinc finger C4H2 domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230211" }, "gene_names": [ { "name": "ZC4H2", "type": "recommended", "evidence": [ { "id": "A0A5G2QSF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ] }, { "name": "ZC4H2", "type": "synonym", "evidence": [ { "id": "NP_001230211", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230211" } ] } ], "protein_names": [ { "name": "Zinc finger C4H2-type containing", "type": "synonym", "evidence": [ { "id": "A0A5G2QSF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger C4H2 domain-containing protein", "type": "synonym", "evidence": [ { "id": "NP_001230211", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230211" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZC4H2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0", "locus": { "chromosome": "X", "start_pos": 51157105, "end_pos": 51193980, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027657", "url": "https://www.ensembl.org/id/ENSSSCG00000027657" } ] } } ], "crossref": [ { "id": "A0A5G2QSF0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100151781", "url": "https://www.ncbi.nlm.nih.gov/gene/100151781", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151781", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151781", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QSF0", "url": "https://www.orthodb.org/?gene=A0A5G2QSF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31058:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31058:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10146", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10146", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230211", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230211", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y1K8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y1K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y1K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y1K8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADEQEIMCKLESIKEIRNKTLQMEKIKTRLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKPLKEHVDALRMTLGLQRLPDLCEEEEKLSLDYFEKQKAEWQTEPQEPPIPESLAAAAAAAQQLQVARKQDTRQTATFRQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRKQDE", "length": 224, "header": "tr|A0A5G2QSF0-1|A0A5G2QSF0_PIG Isoform 1 of Zinc finger C4H2-type containing OS=Sus scrofa OX=9823 GN=ZC4H2 PE=4 SV=1 CANONICAL=A0A5G2QSF0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0/entry", "sequence": { "sequence": "MADEQEIMCKLESIKEIRNKTLQMEKIKTRLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKPLKEHVDALRMTLGLQRLPDLCEEEEKLSLDYFEKQKAEWQTEPQEPPIPESLAAAAAAAQQLQVARKQDTRQTATFRQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRKQDE", "length": 224, "header": "tr|A0A5G2QSF0-1|A0A5G2QSF0_PIG Isoform 1 of Zinc finger C4H2-type containing OS=Sus scrofa OX=9823 GN=ZC4H2 PE=4 SV=1 CANONICAL=A0A5G2QSF0-1" }, "locus": { "chromosome": "X", "start_pos": 51193835, "end_pos": 51158478, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091153.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091153.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063321.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063321.2" } ] } }, { "isoform_ac": "A0A8D1Y1K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y1K8/entry", "sequence": { "sequence": "MADEQEIMCKLESIKEIRNKTLQMEKIKTRLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKPLKEHVDALRMTLGLQRLPDLCEEEEKLSLEPACHVISKFTGMHLYALCAKPRVGPGTPKSQNGSRMNEEKEYT", "length": 176, "header": "tr|A0A8D1Y1K8-1|A0A8D1Y1K8_PIG Computationally mapped isoform of Zinc finger C4H2-type containing OS=Sus scrofa OX=9823 GN=ZC4H2 PE=4 SV=1 CANONICAL=A0A5G2QSF0-1" }, "locus": { "chromosome": "X", "start_pos": 51193835, "end_pos": 51158459, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032193.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032193.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023270.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023270.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151781", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151781", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" }, { "name": "positive regulation of neuron differentiation", "id": "GO:0045666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045666", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSF0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 224, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSF0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF0" }, { "id": "PS51896", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51896" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C4H2-type", "eco_id": "ECO_0000259", "start_pos": 181, "end_pos": 223, "start_aa": "Gln", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSF7-1", "uniprot_ac": "A0A5G2QSF7", "uniprot_id": "A0A5G2QSF7_PIG", "mass": { "chemical_mass": 21071.0, "monoisotopic_mass": 21071.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSF7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050754", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050754", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFDKELEELKNEQTKIDSTIPEMKNSLEGINSRITKAEEQISDIEDRVVEITDVGEKKWKMIKRTEESLRDLWDNIQHTNIIIIGVPEGEERENRPKKIVEEIIAKNFPNMGKETLTQVEEAQRLPHRMNPKRNTTRHIVIKLTKIKHKEKIFKATREKQQITYKGTLINITADLSAETL", "length": 180, "header": "tr|A0A5G2QSF7-1|A0A5G2QSF7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QSF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7/entry", "sequence": { "sequence": "MFDKELEELKNEQTKIDSTIPEMKNSLEGINSRITKAEEQISDIEDRVVEITDVGEKKWKMIKRTEESLRDLWDNIQHTNIIIIGVPEGEERENRPKKIVEEIIAKNFPNMGKETLTQVEEAQRLPHRMNPKRNTTRHIVIKLTKIKHKEKIFKATREKQQITYKGTLINITADLSAETL", "length": 180, "header": "tr|A0A5G2QSF7-1|A0A5G2QSF7_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QSF7-1" }, "locus": { "chromosome": "13", "start_pos": 203191742, "end_pos": 203191203, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071637.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071637.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067860.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067860.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 180, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSF7" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 174, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 170, "end_pos": 172 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSH3-1", "uniprot_ac": "A0A5G2QSH3", "uniprot_id": "A0A5G2QSH3_PIG", "mass": { "chemical_mass": 13703.0, "monoisotopic_mass": 13703.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSH3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSH3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042793", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042793", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLHTDLYSGCTSLHSHQQCKRVPFSPYPLQHLLFVDLLMMAILTGVRWYLTVVLICISLIISDVEHCFKCLLAIHISSLEKCLFRSIAHFFHWVVGLFCC", "length": 119, "header": "tr|A0A5G2QSH3-1|A0A5G2QSH3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSH3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3/entry", "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLHTDLYSGCTSLHSHQQCKRVPFSPYPLQHLLFVDLLMMAILTGVRWYLTVVLICISLIISDVEHCFKCLLAIHISSLEKCLFRSIAHFFHWVVGLFCC", "length": 119, "header": "tr|A0A5G2QSH3-1|A0A5G2QSH3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSH3-1" }, "locus": { "chromosome": "6", "start_pos": 114515684, "end_pos": 114515328, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091396.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091396.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067075.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067075.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSH3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSH3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 119, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSH3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSH3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSJ7-1", "uniprot_ac": "A0A5G2QSJ7", "uniprot_id": "A0A5G2QSJ7_PIG", "mass": { "chemical_mass": 25884.0, "monoisotopic_mass": 25884.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC194", "type": "recommended", "evidence": [ { "id": "A0A5G2QSJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 194", "type": "synonym", "evidence": [ { "id": "A0A5G2QSJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC194", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7", "locus": { "chromosome": "2", "start_pos": 60317891, "end_pos": 60309000, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041467", "url": "https://www.ensembl.org/id/ENSSSCG00000041467" } ] } } ], "crossref": [ { "id": "A0A5G2QSJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041467", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041467", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPGPEPRLEPGRAWRVFALCGAAVFLAVVAAGAALLAWNLAASASRRPHCPEPGTNITELPEDLAPEVKDLQRQLAEAAQREEALTRQLNQAEGVRQELEEALKACEGHQSRLQTQLMTLKTEMDEAKAQETQMGAENGALTEALARWEAAATESAQRLEEVQRRASAAEAEGEACAAREAALRKRFNALETQTGPQRRVPHSRTRSGSRPRPSPRSRSRPGTSGGCRRPARRARG", "length": 238, "header": "tr|A0A5G2QSJ7-1|A0A5G2QSJ7_PIG Isoform 1 of Coiled-coil domain containing 194 OS=Sus scrofa OX=9823 GN=CCDC194 PE=4 SV=1 CANONICAL=A0A5G2QSJ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7/entry", "sequence": { "sequence": "MAEPGPEPRLEPGRAWRVFALCGAAVFLAVVAAGAALLAWNLAASASRRPHCPEPGTNITELPEDLAPEVKDLQRQLAEAAQREEALTRQLNQAEGVRQELEEALKACEGHQSRLQTQLMTLKTEMDEAKAQETQMGAENGALTEALARWEAAATESAQRLEEVQRRASAAEAEGEACAAREAALRKRFNALETQTGPQRRVPHSRTRSGSRPRPSPRSRSRPGTSGGCRRPARRARG", "length": 238, "header": "tr|A0A5G2QSJ7-1|A0A5G2QSJ7_PIG Isoform 1 of Coiled-coil domain containing 194 OS=Sus scrofa OX=9823 GN=CCDC194 PE=4 SV=1 CANONICAL=A0A5G2QSJ7-1" }, "locus": { "chromosome": "2", "start_pos": 60315577, "end_pos": 60312466, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069733.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069733.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064977.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 238, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSJ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSJ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSJ9-1", "uniprot_ac": "A0A5G2QSJ9", "uniprot_id": "A0A5G2QSJ9_PIG", "mass": { "chemical_mass": 86422.0, "monoisotopic_mass": 86422.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QSJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QSJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042737", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042737", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QSJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWATDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLHTELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QSJ9-1|A0A5G2QSJ9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QSJ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9/entry", "sequence": { "sequence": "MNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWATDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLHTELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QSJ9-1|A0A5G2QSJ9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QSJ9-1" }, "locus": { "chromosome": "X", "start_pos": 11833916, "end_pos": 11831703, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075903.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075903.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067802.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067802.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSJ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 738, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSJ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSJ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSJ9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 238, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 531, "end_pos": 533 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSK0-1", "uniprot_ac": "A0A5G2QSK0", "uniprot_id": "A0A5G2QSK0_PIG", "mass": { "chemical_mass": 36521.0, "monoisotopic_mass": 36521.0 }, "refseq": { "ac": "XP_003124520", "name": "prostasin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124520" }, "gene_names": [ { "name": "PRSS8", "type": "recommended", "evidence": [ { "id": "A0A5G2QSK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ] }, { "name": "PRSS8", "type": "synonym", "evidence": [ { "id": "XP_003124520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124520" } ] } ], "protein_names": [ { "name": "Serine protease 8", "type": "synonym", "evidence": [ { "id": "A0A5G2QSK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0/entry#names_and_taxonomy" } ] }, { "name": "prostasin", "type": "synonym", "evidence": [ { "id": "XP_003124520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124520" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRSS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0", "locus": { "chromosome": "3", "start_pos": 17362220, "end_pos": 17357802, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038600", "url": "https://www.ensembl.org/id/ENSSSCG00000038600" } ] } } ], "crossref": [ { "id": "A0A5G2QSK0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038600", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038600", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522730", "url": "https://www.ncbi.nlm.nih.gov/gene/100522730", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522730", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522730", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPYDDIQ", "url": "https://omabrowser.org/oma/group/GPYDDIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QSK0", "url": "https://www.orthodb.org/?gene=A0A5G2QSK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZNI7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQREGLGPRGLAAVATLISLGLFQNGMGAKGDAVSCGIVPQAQGRITGGSNSDPGQWPWQVSINYNGEHVCGGSLVSDQWVLSAAHCFPRDHSTSAYEVKLGAHQLDSFSSSMTVRTVAQVISHPSYLQEGSEGDIALLQLSSPVTFSRYIWPICLPAANASFPNGLQCTVTGWGHVAPSVSLQRPRTLQQLEVPLISRETCNCLYNIDANPDEPHFIQQDMLCAGYVKGGKDACQGDSGGPLSCPAGGHWYLAGIVSWGDACGAPNRPGVYTLTSTYASWIQHNVAELQPQVVPHIGESEPDSDLCSNYGALNAAPAWGLARPILLLPLGLTLGLLRPRLEH", "length": 344, "header": "tr|A0A5G2QSK0-1|A0A5G2QSK0_PIG Isoform 1 of Serine protease 8 OS=Sus scrofa OX=9823 GN=PRSS8 PE=1 SV=1 CANONICAL=A0A5G2QSK0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNI7/entry", "sequence": { "sequence": "MAQREGLGPRGLAAVATLISLGLFQNGMVSCGIVPQAQGRITGGSNSDPGQWPWQVSINYNGEHVCGGSLVSDQWVLSAAHCFPRDHSTSAYEVKLGAHQLDSFSSSMTVRTVAQVISHPSYLQEGSEGDIALLQLSSPVTFSRYIWPICLPAANASFPNGLQCTVTGWGHVAPSVSLQRPRTLQQLEVPLISRETCNCLYNIDANPDEPHFIQQDMLCAGYVKGGKDACQGDSGGPLSCPAGGHWYLAGIVSWGDACGAPNRPGVYTLTSTYASWIQHNVAELQPQVVPHIGESEPDSDLCSNYGALNAAPAWGLARPILLLPLGLTLGLLRPRLEH", "length": 338, "header": "tr|A0A286ZNI7-1|A0A286ZNI7_PIG Computationally mapped isoform of Serine protease 8 OS=Sus scrofa OX=9823 GN=PRSS8 PE=1 SV=1 CANONICAL=A0A5G2QSK0-1" }, "locus": { "chromosome": "3", "start_pos": 17361582, "end_pos": 17358051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065119.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065119.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033189.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033189.1" } ] } }, { "isoform_ac": "A0A5G2QSK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0/entry", "sequence": { "sequence": "MAQREGLGPRGLAAVATLISLGLFQNGMGAKGDAVSCGIVPQAQGRITGGSNSDPGQWPWQVSINYNGEHVCGGSLVSDQWVLSAAHCFPRDHSTSAYEVKLGAHQLDSFSSSMTVRTVAQVISHPSYLQEGSEGDIALLQLSSPVTFSRYIWPICLPAANASFPNGLQCTVTGWGHVAPSVSLQRPRTLQQLEVPLISRETCNCLYNIDANPDEPHFIQQDMLCAGYVKGGKDACQGDSGGPLSCPAGGHWYLAGIVSWGDACGAPNRPGVYTLTSTYASWIQHNVAELQPQVVPHIGESEPDSDLCSNYGALNAAPAWGLARPILLLPLGLTLGLLRPRLEH", "length": 344, "header": "tr|A0A5G2QSK0-1|A0A5G2QSK0_PIG Isoform 1 of Serine protease 8 OS=Sus scrofa OX=9823 GN=PRSS8 PE=1 SV=1 CANONICAL=A0A5G2QSK0-1" }, "locus": { "chromosome": "3", "start_pos": 17361582, "end_pos": 17358051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077789.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077789.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064982.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064982.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522730", "resource": "KEGG Pathway" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TPD0-1", "protein_name": "tryptase", "gene_name": "PRSS8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARKSGLGPRWLEAVATVLLLGLFRNGIGAVAAEVRTYSCGMVPQGRITGGTTAALGQWPWQVSINHHGTHVCGGSLVSDQWVLSAAHCFPSDNKIEEYEVKLGAHQLDYFSTDTQVRGVAQVISHEKYSHEGSMGDIALLQLSSSVTFSRYIRPICLPAANASFPNGLQCVVTGWGHVAPSVSLQHPRPLQQLEVPLISRETCNCLYNINAKPGEPHVIDQDMLCAGYVNGSKDACQGDSGGPLSCPVAGRWYLAGIVSWGDACGAPNRPGVYTLTSVYASWIHYKVAELQPKVVPQMEESQPDGHLCSHYKGFNSAPAQGLVGPILLLPLGLTLGLLRPLHED", "length": 345 }, "evidence": [ { "id": "A0A5G2QSK0", "url": "https://omabrowser.org/oma/group/A0A5G2QSK0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q16651-1", "protein_name": "Prostasin", "gene_name": "PRSS8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQKGVLGPGQLGAVAILLYLGLLRSGTGAEGAEAPCGVAPQARITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPICLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNCLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQPRVVPQTQESQPDSNLCGSHLAFSSAPAQGLLRPILFLPLGLALGLLSPWLSEH", "length": 343 }, "evidence": [ { "id": "A0A5G2QSK0", "url": "https://omabrowser.org/oma/group/A0A5G2QSK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ES87-1", "protein_name": "Prostasin", "gene_name": "Prss8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRVGLGLGQLEALFVLLLIGLLQSRIGADGTEASCGAVIQPRITGGGSAKPGQWPWQVSITYNGVHVCGGSLVSNQWVVSAAHCFPREHSKEEYEVKLGAHQLDSFSNDIVVHTVAQIISHSSYREEGSQGDIALIRLSSPVTFSRYIRPICLPAANASFPNGLHCTVTGWGHVAPSVSLQTPRPLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCAGYVKGGKDACQGDSGGPLSCPIDGLWYLAGIVSWGDACGAPNRPGVYTLTSTYASWIHHHVAELQPRVVPQTQESQPDGHLCNHHPVFNLAAAQKLSRPILFLPLSLTLGLFSLWLEH", "length": 342 }, "evidence": [ { "id": "A0A5G2QSK0", "url": "https://omabrowser.org/oma/group/A0A5G2QSK0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" }, { "name": "positive regulation of sodium ion transport", "id": "GO:0010765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010765", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 344, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSK0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSK0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK0" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 288, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSM1-1", "uniprot_ac": "A0A5G2QSM1", "uniprot_id": "A0A5G2QSM1_PIG", "mass": { "chemical_mass": 76040.0, "monoisotopic_mass": 76040.0 }, "refseq": {}, "gene_names": [ { "name": "KLHL1", "type": "recommended", "evidence": [ { "id": "A0A5G2QSM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ] } ], "protein_names": [ { "name": "Kelch like family member 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QSM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1", "locus": { "chromosome": "11", "start_pos": 42033851, "end_pos": 42419734, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009456", "url": "https://www.ensembl.org/id/ENSSSCG00000009456" } ] } } ], "crossref": [ { "id": "A0A5G2QSM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009456", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009456", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18335", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18335", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18509", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18509", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520632", "url": "https://www.ncbi.nlm.nih.gov/gene/100520632", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520632", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520632", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFEHWGP", "url": "https://omabrowser.org/oma/group/GFEHWGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QLC8", "url": "https://www.orthodb.org/?gene=A0A5G2QLC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RJ37", "url": "https://www.orthodb.org/?gene=F1RJ37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QLC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ37", "url": "https://www.uniprot.org/uniprotkb/F1RJ37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ37-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSPGGPAGGSCLQQDSSGSFEHWGPSQSRLLKSQEKGSVSTFWKKPSSSSSSSSSASTSSSSSSFNPLNGTLLPVATRLQQGAPGQGTHQPARTLFYVESLEEEEVPGMDFPGPHEKGLVLQELRVEPATSSQATGEGCGHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEETIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCNDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVASLNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQT", "length": 689, "header": "tr|A0A5G2QSM1-1|A0A5G2QSM1_PIG Isoform 1 of Kelch like family member 1 OS=Sus scrofa OX=9823 GN=KLHL1 PE=4 SV=1 CANONICAL=A0A5G2QSM1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLC8/entry", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSPGGPAGGSCLQQDSSGSFEHWGPSQSRLLKSQEKGSVSTFWKKPSSSSSSSSSASTSSSSSSFNPLNGTLLPVATRLQQGAPGQGTHQPARTLFYVESLEEEEVPGMDFPGPHEKGLVLQELRVEPATSSQATGEGCGHRLSAASHSLTPQSDMDSSSSEEFYQAVHHAEQTFRKMESYLKQQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEETIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCNDLSMLLAFIRLPLLPPQCLIETWRQTLELRRKNSFYYFARQRKPQQAYALKIVPSTGKNCKEFYSKKEKNRLSDRNQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVASLNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQT", "length": 810, "header": "tr|A0A5G2QLC8-1|A0A5G2QLC8_PIG Computationally mapped isoform of Kelch like family member 1 OS=Sus scrofa OX=9823 GN=KLHL1 PE=4 SV=1 CANONICAL=A0A5G2QSM1-1" }, "locus": { "chromosome": "11", "start_pos": 42418989, "end_pos": 42034970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087925.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087925.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065371.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065371.1" } ] } }, { "isoform_ac": "A0A5G2QSM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1/entry", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSPGGPAGGSCLQQDSSGSFEHWGPSQSRLLKSQEKGSVSTFWKKPSSSSSSSSSASTSSSSSSFNPLNGTLLPVATRLQQGAPGQGTHQPARTLFYVESLEEEEVPGMDFPGPHEKGLVLQELRVEPATSSQATGEGCGHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEETIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCNDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVASLNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQT", "length": 689, "header": "tr|A0A5G2QSM1-1|A0A5G2QSM1_PIG Isoform 1 of Kelch like family member 1 OS=Sus scrofa OX=9823 GN=KLHL1 PE=4 SV=1 CANONICAL=A0A5G2QSM1-1" }, "locus": { "chromosome": "11", "start_pos": 42418989, "end_pos": 42034970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085833.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085833.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067126.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067126.1" } ] } }, { "isoform_ac": "F1RJ37-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ37/entry", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSPGGPAGGSCLQQDSSGSFEHWGPSQSRLLKSQEKGSVSTFWKKPSSSSSSSSSASTSSSSSSFNPLNGTLLPVATRLQQGAPGQGTHQPARTLFYVESLEEEEVPGMDFPGPHEKGLVLQELRVEPATSSQATGEGCGHRLSAASHSLTPQSDMDSSSSEEFYQAVHHAEQTFRKMESYLKQQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEETIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCNDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVASLNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQT", "length": 750, "header": "tr|F1RJ37-1|F1RJ37_PIG Computationally mapped isoform of Kelch like family member 1 OS=Sus scrofa OX=9823 GN=KLHL1 PE=4 SV=3 CANONICAL=A0A5G2QSM1-1" }, "locus": { "chromosome": "11", "start_pos": 42418989, "end_pos": 42034970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010366.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010366.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010096.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010096.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520632", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520632", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T6M6-1", "protein_name": "Kelch like family member 1", "gene_name": "KLHL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSAGSPAGGSCLQQDGSSSFEHWGPSQSRLLKSQEKGGVSTFWKKPSSSASSSSSASPSSSASSFSPLNGTLLPVATRLQPGAPGQGIHQPARTLFYVESLEEEEVPGMDFPGPHDKGLVPQEFKVEPANSSQATGEGCGHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEETIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCNDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVAALNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQP", "length": 689 }, "evidence": [ { "id": "A0A5G2QSM1", "url": "https://omabrowser.org/oma/group/A0A5G2QSM1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A9J8-1", "protein_name": "Kelch-like family member 1", "gene_name": "Klhl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPASGSSAGGSCLQQDSGGGSFEHWGPSQSRLLKNQEKGSVSAFWKKPSSSSTSSSSSSSASSSPFSPLNGTLLPVATRLQQGAPGQGTQQPARTLFYVESLEEEVVTGMDFPGPQDKGLALKELQAEPASSIQATGEGCGHRLTTTNHSLTPQSDLDSSSSEEFYQAVHHAEQSFRKMENYLKQQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEDTIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCGDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTYVASMSIARSTVGVAALNGKLYSVGGRDGSSCLSSMEYYDPHTNKWSMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQP", "length": 750 }, "evidence": [ { "id": "A0A5G2QSM1", "url": "https://omabrowser.org/oma/group/A0A5G2QSM1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JI74-1", "protein_name": "Kelch-like protein 1", "gene_name": "Klhl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPASSSPAGGSCLQQDSGGGSFEHWGPSQSRLLKNQEKGSVSAFWKKPSSSSSSSSSSSSSASSSPFNPLNGTLLPVATRLQQGAPGQGTQQPARTLFYVESLEEEVVTGMDFSGPEDKGLALKELQAEPASSIQATGEGCGHRLTSTNHSLTPQSDLDSSSSEEFYQAVHHAEQSFRKMENYLKQQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEDTIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCSDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTYVASMSIARSTVGVAALNGKLYSVGGRDGSSCLSSMEYYDPHTNKWSMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQP", "length": 751 }, "evidence": [ { "id": "A0A5G2QSM1", "url": "https://omabrowser.org/oma/group/A0A5G2QSM1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NR64-1", "protein_name": "Kelch-like protein 1", "gene_name": "KLHL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGSGRKDFDVKHILRLRWKLFSHPSPSTGGPAGGGCLQQDGSGSFEHWGPSQSRLLKSQERSGVSTFWKKPSSSSSSSSSPSSSSSSFNPLNGTLLPVATRLQQGAPGQGTQQPARTLFYVESLEEEVVPGMDFPGPHEKGLVLQELKVEPDNSSQATGEGCGHRLSSTGHSMTPQSDLDSSSSEEFYQAVHHAEQTFRKMESYLKQQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLELKEDTIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRNQEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQSRCNDLSMLLAFIRLPLLPPQILADLENHALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWIQAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYAVGGHDGWSYLNTVERWDPQSQQWTFVASMSIARSTVGVAALNGKLYSVGGRDGSSCLSSMEYYDPHTNKWNMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCLLGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQP", "length": 748 }, "evidence": [ { "id": "A0A5G2QSM1", "url": "https://omabrowser.org/oma/group/A0A5G2QSM1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "dendrite development", "id": "GO:0016358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016358", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSM1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 689, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSM1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSM1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM1" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 220, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSM6-1", "uniprot_ac": "A0A5G2QSM6", "uniprot_id": "A0A5G2QSM6_PIG", "mass": { "chemical_mass": 23600.0, "monoisotopic_mass": 23600.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSM6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041719", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041719", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKRHMKRCSTSLIIREMQMKTTMRYHLTLVRMTIINKSTKNKCQRRGGETGILLHCKLVQLLWKTVWRYLTKLNIEIPYDQTIPLWGIYPDRTFIQKDTDTVFIAALFTTAKTRKQTKCPSIDGWIHKMISLSWHLIYSTNEHIFIKETNSWTGEQTCGCQRGGSGMAWEFAVNICKLLHLEWISNERSCCMPQGTISDHL", "length": 202, "header": "tr|A0A5G2QSM6-1|A0A5G2QSM6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSM6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6/entry", "sequence": { "sequence": "MAKRHMKRCSTSLIIREMQMKTTMRYHLTLVRMTIINKSTKNKCQRRGGETGILLHCKLVQLLWKTVWRYLTKLNIEIPYDQTIPLWGIYPDRTFIQKDTDTVFIAALFTTAKTRKQTKCPSIDGWIHKMISLSWHLIYSTNEHIFIKETNSWTGEQTCGCQRGGSGMAWEFAVNICKLLHLEWISNERSCCMPQGTISDHL", "length": 202, "header": "tr|A0A5G2QSM6-1|A0A5G2QSM6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSM6-1" }, "locus": { "chromosome": "7", "start_pos": 51938542, "end_pos": 51937937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082720.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082720.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067935.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067935.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 202, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSM6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSQ1-1", "uniprot_ac": "A0A5G2QSQ1", "uniprot_id": "A0A5G2QSQ1_PIG", "mass": { "chemical_mass": 13582.0, "monoisotopic_mass": 13582.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSQ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSQ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049471", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049471", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTGMRWCLVILICISLIIRDVEHFFMCLLAICTSSLEKCLFKSFSIGFLAFLLLSCTNCLYILEIKSLSIASFETIFSHSVSCLFVFFLVSFAVQKLVSLMRSHGFIFALISIALGD", "length": 121, "header": "tr|A0A5G2QSQ1-1|A0A5G2QSQ1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSQ1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1/entry", "sequence": { "sequence": "MMAILTGMRWCLVILICISLIIRDVEHFFMCLLAICTSSLEKCLFKSFSIGFLAFLLLSCTNCLYILEIKSLSIASFETIFSHSVSCLFVFFLVSFAVQKLVSLMRSHGFIFALISIALGD", "length": 121, "header": "tr|A0A5G2QSQ1-1|A0A5G2QSQ1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSQ1-1" }, "locus": { "chromosome": "3", "start_pos": 98050911, "end_pos": 98050549, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090809.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090809.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067857.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067857.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSQ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSQ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 121, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSQ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSQ1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSR6-1", "uniprot_ac": "A0A5G2QSR6", "uniprot_id": "A0A5G2QSR6_PIG", "mass": { "chemical_mass": 12364.0, "monoisotopic_mass": 12364.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041087", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041087", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYHIFFSHSSVNGHLGCFHIFAIENTAAVNIRVHVSLRVMVFSGSMPKSGIAGSNGSSIFSFLRNLHTAFHSGRRHLHSYQQCTRVPFSLHHLQHLFVDFVMMAILAGVR", "length": 110, "header": "tr|A0A5G2QSR6-1|A0A5G2QSR6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSR6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6/entry", "sequence": { "sequence": "MYHIFFSHSSVNGHLGCFHIFAIENTAAVNIRVHVSLRVMVFSGSMPKSGIAGSNGSSIFSFLRNLHTAFHSGRRHLHSYQQCTRVPFSLHHLQHLFVDFVMMAILAGVR", "length": 110, "header": "tr|A0A5G2QSR6-1|A0A5G2QSR6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSR6-1" }, "locus": { "chromosome": "3", "start_pos": 84207424, "end_pos": 84207095, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073377.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073377.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065042.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065042.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSR6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QST0-1", "uniprot_ac": "A0A5G2QST0", "uniprot_id": "A0A5G2QST0_PIG", "mass": { "chemical_mass": 12028.0, "monoisotopic_mass": 12028.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein P1", "type": "recommended", "evidence": [ { "id": "A0A5G2QST0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0/entry#names_and_taxonomy" } ] }, { "name": "60S acidic ribosomal protein P1", "type": "synonym", "evidence": [ { "id": "A0A5G2QST0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays an important role in the elongation step of protein synthesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0#function" }, { "database": "UniProtKB", "id": "ARBA00003362", "url": "https://www.uniprot.org/uniprotkb/ARBA00003362#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QST0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QST0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05831", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05831", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR038716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45696:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45696:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QST0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KLSQSLPKNEVTVTEYKVNAFIKAAGVNVEPFWPGLFAKALANINIHNLICNVGAGGPVPAAGATPSGGPDPVTTAAPREDKKVEAKKENSEESDDNKGFGLFHSTSVTHSVIKS", "length": 115, "header": "tr|A0A5G2QST0-1|A0A5G2QST0_PIG Isoform 1 of Large ribosomal subunit protein P1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QST0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QST0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0/entry", "sequence": { "sequence": "KLSQSLPKNEVTVTEYKVNAFIKAAGVNVEPFWPGLFAKALANINIHNLICNVGAGGPVPAAGATPSGGPDPVTTAAPREDKKVEAKKENSEESDDNKGFGLFHSTSVTHSVIKS", "length": 115, "header": "tr|A0A5G2QST0-1|A0A5G2QST0_PIG Isoform 1 of Large ribosomal subunit protein P1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QST0-1" }, "locus": { "chromosome": "2", "start_pos": 105491295, "end_pos": 105490951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094046.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094046.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081026.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081026.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ribonucleoprotein complex binding", "id": "GO:0043021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043021", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "pmid": "" }, { "name": "protein kinase activator activity", "id": "GO:0030295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030295", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QST0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QST0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QST0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QST0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QST0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSU7-1", "uniprot_ac": "A0A5G2QSU7", "uniprot_id": "A0A5G2QSU7_PIG", "mass": { "chemical_mass": 20914.0, "monoisotopic_mass": 20914.0 }, "refseq": {}, "gene_names": [ { "name": "MPV17L", "type": "recommended", "evidence": [ { "id": "A0A5G2QSU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ] } ], "protein_names": [ { "name": "MPV17 mitochondrial inner membrane protein like", "type": "synonym", "evidence": [ { "id": "A0A5G2QSU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MPV17L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7", "locus": { "chromosome": "3", "start_pos": 7427395, "end_pos": 7441567, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032056", "url": "https://www.ensembl.org/id/ENSSSCG00000032056" } ] } } ], "crossref": [ { "id": "A0A5G2QSU7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032056", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032056", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BS02", "url": "https://www.uniprot.org/uniprotkb/A0A287BS02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGWWRVLPRAAGRYPWPTNVLLYTALFSAGDALQQRLRGCRADWRQTRHVATVAVVFHGNFNYVWLRLLERALPGRAPRVILAKVLCDQALGGPVAVSAFYLGMSILQGKDDIFLDLRQKFWNTYKLTNFSLVPVPWRTAYTGLCGFLWATFLCFSQQGGDGTLKSAFASLRTKGTNEVESPPEK", "length": 186, "header": "tr|A0A5G2QSU7-1|A0A5G2QSU7_PIG Isoform 1 of MPV17 mitochondrial inner membrane protein like OS=Sus scrofa OX=9823 GN=MPV17L PE=3 SV=1 CANONICAL=A0A5G2QSU7-1" }, "isoforms": [ { "isoform_ac": "A0A287BS02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS02/entry", "sequence": { "sequence": "MAGWWRVLPRAAGRYPWPTNVLLYTALFSAGDALQQRLRGCRADWRQTRHVATVAVVFHGNFNYVWLRLLERALPGRAPRVILAKVLCDQALGGPVAVSAFYLGMSILQGKDDIFLDLRQKFWNTYKSGLMYWPFVQSPSVPAHQLQPRSCSLENSLHRTLRLSVGHLPLLFTTGW", "length": 176, "header": "tr|A0A287BS02-1|A0A287BS02_PIG Computationally mapped isoform of MPV17 mitochondrial inner membrane protein like OS=Sus scrofa OX=9823 GN=MPV17L PE=3 SV=2 CANONICAL=A0A5G2QSU7-1" }, "locus": { "chromosome": "3", "start_pos": 7441487, "end_pos": 7430911, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057186.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057186.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058954.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058954.2" } ] } }, { "isoform_ac": "A0A5G2QSU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7/entry", "sequence": { "sequence": "MAGWWRVLPRAAGRYPWPTNVLLYTALFSAGDALQQRLRGCRADWRQTRHVATVAVVFHGNFNYVWLRLLERALPGRAPRVILAKVLCDQALGGPVAVSAFYLGMSILQGKDDIFLDLRQKFWNTYKLTNFSLVPVPWRTAYTGLCGFLWATFLCFSQQGGDGTLKSAFASLRTKGTNEVESPPEK", "length": 186, "header": "tr|A0A5G2QSU7-1|A0A5G2QSU7_PIG Isoform 1 of MPV17 mitochondrial inner membrane protein like OS=Sus scrofa OX=9823 GN=MPV17L PE=3 SV=1 CANONICAL=A0A5G2QSU7-1" }, "locus": { "chromosome": "3", "start_pos": 7441487, "end_pos": 7430835, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083229.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083229.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067211.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067211.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of hydrogen peroxide biosynthetic process", "id": "GO:0010730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "pmid": "" }, { "name": "negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway", "id": "GO:1901029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901029", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSU7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSU7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSU7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSU7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSV0-1", "uniprot_ac": "A0A5G2QSV0", "uniprot_id": "A0A5G2QSV0_PIG", "mass": { "chemical_mass": 37455.0, "monoisotopic_mass": 37455.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "CCDC144C-like coiled-coil domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QSV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041367", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041367", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24147:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24147:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QSV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIQDEIATLKREIDTIKNENQEKEKKYLEDIEIVKQKNDELQKAIKLNEEKLTQTYSGQLHDLTAENTRLKSKLKKEEQKKESLETDVELYCSKLTTAMSDHEQSQTAKRDLELTFQRARGEWLCLQDKMNLEMSNLKDHNKLLLQQLSETQRKFSSLDIEMHHTRDALRENSLLLEQVQRELSQAQCQKKESEDPCLCEHGKLKEYMGKQERLEERLAQLESVNLLLQEQLDDAKNKIESKEKMVMDSQERFQDILKTFQDQREKESLMLEESLKKLTNELHLLKERLSQAENVKTQRAVSIQKEKGFSDLLKGSSE", "length": 318, "header": "tr|A0A5G2QSV0-1|A0A5G2QSV0_PIG Isoform 1 of CCDC144C-like coiled-coil domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSV0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0/entry", "sequence": { "sequence": "MIQDEIATLKREIDTIKNENQEKEKKYLEDIEIVKQKNDELQKAIKLNEEKLTQTYSGQLHDLTAENTRLKSKLKKEEQKKESLETDVELYCSKLTTAMSDHEQSQTAKRDLELTFQRARGEWLCLQDKMNLEMSNLKDHNKLLLQQLSETQRKFSSLDIEMHHTRDALRENSLLLEQVQRELSQAQCQKKESEDPCLCEHGKLKEYMGKQERLEERLAQLESVNLLLQEQLDDAKNKIESKEKMVMDSQERFQDILKTFQDQREKESLMLEESLKKLTNELHLLKERLSQAENVKTQRAVSIQKEKGFSDLLKGSSE", "length": 318, "header": "tr|A0A5G2QSV0-1|A0A5G2QSV0_PIG Isoform 1 of CCDC144C-like coiled-coil domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSV0-1" }, "locus": { "chromosome": "17", "start_pos": 8705943, "end_pos": 8704990, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080537.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080537.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065072.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065072.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSV0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSV0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSV0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV0" }, { "id": "PF14915", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14915" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC144C-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 305, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSW1-1", "uniprot_ac": "A0A5G2QSW1", "uniprot_id": "A0A5G2QSW1_PIG", "mass": { "chemical_mass": 7577.0, "monoisotopic_mass": 7577.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSW1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050345", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050345", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLEGSGFNSLTAGRSASPSQLSMILIPANWSLQFLRLMVDRKGSDSRLTSKLIWLTPEVSSMHKLAEA", "length": 69, "header": "tr|A0A5G2QSW1-1|A0A5G2QSW1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSW1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1/entry", "sequence": { "sequence": "MLLEGSGFNSLTAGRSASPSQLSMILIPANWSLQFLRLMVDRKGSDSRLTSKLIWLTPEVSSMHKLAEA", "length": 69, "header": "tr|A0A5G2QSW1-1|A0A5G2QSW1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSW1-1" }, "locus": { "chromosome": "18", "start_pos": 11113386, "end_pos": 11112874, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076263.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076263.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065082.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065082.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 69, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSW1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSX8-1", "uniprot_ac": "A0A5G2QSX8", "uniprot_id": "A0A5G2QSX8_PIG", "mass": { "chemical_mass": 35702.0, "monoisotopic_mass": 35702.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Vomeronasal type-1 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2QSX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative pheromone receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8#function" }, { "database": "UniProtKB", "id": "ARBA00003878", "url": "https://www.uniprot.org/uniprotkb/ARBA00003878#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KLRRQANLEMEILFLTQTGAGILGNSSLLCLYNLTLLTGSKMRPTDQIANQLTRAAFGMKCFPDEAGCKLVFCLHRVARGVSISTTCLLSGFQALKFCSRNSWWIDFRIQCLKSIGFCSFLFWILQLVVNVCVPIRITGPRSGKNINVKTYYGYCSSLTPDKFMRLSRAVVLVLVDVVCLGCVIWTRGYMLFVLHRHKQKVQHIHSKTFPQTFPRGQSYMILVSRFVYCYCTSSILTLCVTLIVNPNQWLRVISVLLASCLSAFSPFVLLSSDSRVSHSFLDFCTRKTVSSLSSSTVTLLLISAVDINNRSIINLHF", "length": 317, "header": "tr|A0A5G2QSX8-1|A0A5G2QSX8_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QSX8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8/entry", "sequence": { "sequence": "KLRRQANLEMEILFLTQTGAGILGNSSLLCLYNLTLLTGSKMRPTDQIANQLTRAAFGMKCFPDEAGCKLVFCLHRVARGVSISTTCLLSGFQALKFCSRNSWWIDFRIQCLKSIGFCSFLFWILQLVVNVCVPIRITGPRSGKNINVKTYYGYCSSLTPDKFMRLSRAVVLVLVDVVCLGCVIWTRGYMLFVLHRHKQKVQHIHSKTFPQTFPRGQSYMILVSRFVYCYCTSSILTLCVTLIVNPNQWLRVISVLLASCLSAFSPFVLLSSDSRVSHSFLDFCTRKTVSSLSSSTVTLLLISAVDINNRSIINLHF", "length": 317, "header": "tr|A0A5G2QSX8-1|A0A5G2QSX8_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QSX8-1" }, "locus": { "chromosome": "6", "start_pos": 62287472, "end_pos": 62286269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091632.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091632.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067937.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067937.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to pheromone", "id": "GO:0019236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pheromone binding", "id": "GO:0005550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005550", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "pmid": "" }, { "name": "pheromone receptor activity", "id": "GO:0016503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSX8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSX8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSX8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSY1-1", "uniprot_ac": "A0A5G2QSY1", "uniprot_id": "A0A5G2QSY1_PIG", "mass": { "chemical_mass": 23636.0, "monoisotopic_mass": 23636.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSY1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043560", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043560", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDVRRATIKCLFRANQDVEGEGGRVPAHRLHSQSNLSGQLPLCHFSSLLKQPLGRLREGAGAEGVHRSPGCVRPLASVGAAVCRGAAGPREEGGGAGAAWQLLRPGWRRQLVLLTGELWDGDRVFPGISPALLTFDSPRRGGGSPTGAAGETRGLSHCQSPLQRTLSVSAWWASVWCLLPPGRDAGRESPACAAAGPSSARTPPLFLLLCTAGCLARGSHRGTAGA", "length": 227, "header": "tr|A0A5G2QSY1-1|A0A5G2QSY1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSY1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1/entry", "sequence": { "sequence": "MTDVRRATIKCLFRANQDVEGEGGRVPAHRLHSQSNLSGQLPLCHFSSLLKQPLGRLREGAGAEGVHRSPGCVRPLASVGAAVCRGAAGPREEGGGAGAAWQLLRPGWRRQLVLLTGELWDGDRVFPGISPALLTFDSPRRGGGSPTGAAGETRGLSHCQSPLQRTLSVSAWWASVWCLLPPGRDAGRESPACAAAGPSSARTPPLFLLLCTAGCLARGSHRGTAGA", "length": 227, "header": "tr|A0A5G2QSY1-1|A0A5G2QSY1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSY1-1" }, "locus": { "chromosome": "4", "start_pos": 95905734, "end_pos": 95905054, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079870.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079870.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067251.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067251.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSY1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 227, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSY1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSY1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSZ2-1", "uniprot_ac": "A0A5G2QSZ2", "uniprot_id": "A0A5G2QSZ2_PIG", "mass": { "chemical_mass": 148900.0, "monoisotopic_mass": 148900.0 }, "refseq": {}, "gene_names": [ { "name": "RNF123", "type": "recommended", "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF123", "type": "recommended", "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2/entry#names_and_taxonomy" } ] }, { "name": "Kip1 ubiquitination-promoting complex protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 123", "type": "synonym", "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF123", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2", "locus": { "chromosome": "13", "start_pos": 32250739, "end_pos": 32218384, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011387", "url": "https://www.ensembl.org/id/ENSSSCG00000011387" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011387", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011387", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16541", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16541", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13363:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13363:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZKD3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZKD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNV4", "url": "https://www.uniprot.org/uniprotkb/A0A287BNV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPR6", "url": "https://www.uniprot.org/uniprotkb/F1SPR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFZ7", "url": "https://www.uniprot.org/uniprotkb/I3LFZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFZ7-1", "url": "https://www.uniprot.org/uniprotkb/I3LFZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPFVKKAVVAGYRPLQDPPRADLVRAQKLLGCFQAVLSVELDPTEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEGGTPAQAQSMVHQVLDLLWLFMEDYEVQDCLKQSMMSLLRLYRFSPIVPDLGLQIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEEAYIPPQVFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1320, "header": "tr|A0A5G2QSZ2-1|A0A5G2QSZ2_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF123 OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=1 CANONICAL=A0A5G2QSZ2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZKD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKD3/entry", "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRYGRVDLPPHSLGPHQRLGAALWKGGLGSGKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPFVKKAVVAGYRPLQDPPRADLVRAQKLLGCFQAVLSVELDPTEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEGGTPAQAQSMVHQVLDLLWLFMEDYEVQDCLKQSMMSLLRLYRFSPIVPDLGLQIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEEAYIPPQVFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1349, "header": "tr|A0A286ZKD3-1|A0A286ZKD3_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF123 OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=2 CANONICAL=A0A5G2QSZ2-1" }, "locus": { "chromosome": "13", "start_pos": 32250493, "end_pos": 32222373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050496.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050496.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031918.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031918.3" } ] } }, { "isoform_ac": "A0A287BNV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNV4/entry", "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPFVKKAVVAGYRPLQDPPRADLVRAQKLLGCFQAVLSVELDPTEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEGGTPAQAQSMVHQVLDLLWLFMEDYEVQDCLKQSMMSLLRLYRFSPIVPDLGLQIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1286, "header": "tr|A0A287BNV4-1|A0A287BNV4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF123 OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=2 CANONICAL=A0A5G2QSZ2-1" }, "locus": { "chromosome": "13", "start_pos": 32250493, "end_pos": 32222373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049572.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049572.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058103.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058103.3" } ] } }, { "isoform_ac": "A0A5G2QSZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2/entry", "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPFVKKAVVAGYRPLQDPPRADLVRAQKLLGCFQAVLSVELDPTEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEGGTPAQAQSMVHQVLDLLWLFMEDYEVQDCLKQSMMSLLRLYRFSPIVPDLGLQIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEEAYIPPQVFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1320, "header": "tr|A0A5G2QSZ2-1|A0A5G2QSZ2_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF123 OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=1 CANONICAL=A0A5G2QSZ2-1" }, "locus": { "chromosome": "13", "start_pos": 32250493, "end_pos": 32222373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067952.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067952.1" } ] } }, { "isoform_ac": "F1SPR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR6/entry", "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEGGTPAQAQSMVHQVLDLLWLFMEDYEVQDCLKQSMMSLLRLYRFSPIVPDLGLQIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEEAYIPPQVFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1211, "header": "tr|F1SPR6-1|F1SPR6_PIG Computationally mapped isoform of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=2 CANONICAL=A0A5G2QSZ2-1" }, "locus": { "chromosome": "13", "start_pos": 32250493, "end_pos": 32222373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012465.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012465.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012140.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012140.3" } ] } }, { "isoform_ac": "I3LFZ7-1", "url": "https://www.uniprot.org/uniprotkb/I3LFZ7/entry", "sequence": { "sequence": "MASKGAGMSFSRKSYRLTSDAEKSRVTGIVHEKLLNDYLHRIFSSADHASTTATSRKPLNFQNLPEHLDQLLRVDDEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPFVKKAVVAGYRPLQDPPRADLVRAQKLLGCFQAVLSVELDPTEGQLLEKESSEWQLQGQPTILLTLAHIFHRFAPLLIRYLQLTIAILSHEKSRKFLLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSGREGKESKEVKDETSEERLRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENASSRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPRASFSEEAYIPPQVFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANILIDPLELQAATMDDLDEDEEPAPAAAQRPMQALAVGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSAEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAIMMYNLSVHQQLGKMVGVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMQDIYWLLRVCLRTIEHGDRTGPLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELTGYEETLTRLAAILAKHFADTRIVGTDIRDSLMQALASYVCYPNSLRAVERIPEEQRIAMVRSLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLREGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWARPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPASGIERATSVLLADPCFQLRSICYLLGQSEPPTPGTALSAPDRKHFSLQSYTDYISVEELAQVEQMLAHLTTASAQAAAASLPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANASATSSAA", "length": 1247, "header": "tr|I3LFZ7-1|I3LFZ7_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF123 OS=Sus scrofa OX=9823 GN=RNF123 PE=1 SV=4 CANONICAL=A0A5G2QSZ2-1" }, "locus": { "chromosome": "13", "start_pos": 32250493, "end_pos": 32222373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027968.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027968.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022990.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022990.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1203, "start_aa": "Thr", "end_pos": 1203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1203", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 356, "start_aa": "Thr", "end_pos": 356, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr356", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "protein catabolic process", "id": "GO:0030163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030163", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" }, { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1312, "end_pos": 1314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-6781814", "name": "USP19 deubiquitinates RNF123", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6781814", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6781814" } ] }, { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 254, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QSZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ2" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 1260, "end_pos": 1298, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 356, 1203 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1312, "end_pos": 1314 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 765, "end_pos": 767 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSZ5-1", "uniprot_ac": "A0A5G2QSZ5", "uniprot_id": "A0A5G2QSZ5_PIG", "mass": { "chemical_mass": 12320.0, "monoisotopic_mass": 12320.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QSZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSZ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043789", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043789", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QSZ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ATSGLASSADSVALTLALASRVASASAAMDLCSCTGIRTSLISTRATRIPHSSVASSSKVCFQVKRKDNDQKTSDGIYVLMYFIYAGNVLFSPAFTAPGVRRLGEGIGVLITCLLELK", "length": 118, "header": "tr|A0A5G2QSZ5-1|A0A5G2QSZ5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSZ5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5/entry", "sequence": { "sequence": "ATSGLASSADSVALTLALASRVASASAAMDLCSCTGIRTSLISTRATRIPHSSVASSSKVCFQVKRKDNDQKTSDGIYVLMYFIYAGNVLFSPAFTAPGVRRLGEGIGVLITCLLELK", "length": 118, "header": "tr|A0A5G2QSZ5-1|A0A5G2QSZ5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QSZ5-1" }, "locus": { "chromosome": "11", "start_pos": 14135172, "end_pos": 14134315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089507.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089507.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067266.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067266.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSZ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSZ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSZ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 118, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSZ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSZ5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QT07-1", "uniprot_ac": "A0A5G2QT07", "uniprot_id": "A0A5G2QT07_PIG", "mass": { "chemical_mass": 14948.0, "monoisotopic_mass": 14948.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QT07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07", "locus": {} } ], "crossref": [ { "id": "A0A5G2QT07", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT07", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QT07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHKSGIAGSYGGSMYSFLRYLHTVLHSGYTSLHSHQQCRKVPFSPHPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIIRDVEHFFKCLLPSVLFLGKMSIQVFCPFFNWVVGFFAVEIYKLLVYSRD", "length": 129, "header": "tr|A0A5G2QT07-1|A0A5G2QT07_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QT07-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QT07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07/entry", "sequence": { "sequence": "MHKSGIAGSYGGSMYSFLRYLHTVLHSGYTSLHSHQQCRKVPFSPHPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIIRDVEHFFKCLLPSVLFLGKMSIQVFCPFFNWVVGFFAVEIYKLLVYSRD", "length": 129, "header": "tr|A0A5G2QT07-1|A0A5G2QT07_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QT07-1" }, "locus": { "chromosome": "14", "start_pos": 119319214, "end_pos": 119318828, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075868.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075868.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065122.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065122.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QT07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QT07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT07" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QT36-1", "uniprot_ac": "A0A5G2QT36", "uniprot_id": "A0A5G2QT36_PIG", "mass": { "chemical_mass": 144303.0, "monoisotopic_mass": 144303.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QT36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in spermatogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36#function" }, { "database": "UniProtKB", "id": "ARBA00037695", "url": "https://www.uniprot.org/uniprotkb/ARBA00037695#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000044869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21859:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21859:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15371", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15371", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPRVSFYCTCPSGPAPQSLRRCPPLSGLPSPPGLIHSWLQLLSPISYSHLGRLPDKGSFHLLSCQETPGETCEAVPAGVCQPCGEPVEDAAPAIPPLAPLSKHPPPLASTLLPGPTTSSASVHSHTSLNASQPPEPSVPLASLSPWPLDLSSPPPCPPDSEACPPPPTASSAPTPQDSTPTLTQDDPSMALPLGTVPQNLSPHNPGSTSLAPAISGFGRSGCPPSALSRWQAAAKALCLSRSSQGKSQEKHLSYHPPDASFSVGPSDREMEASSPSLLSSDDQKLLEIQMTKTVEIKIWKEKEKDGSNLKQMSPDCHLDSLGSMLKALGADQNTTIAQTFWNTKDKPEQLPCPQQLSYPNHLQQEYNQLFWGLPSLHSESLVATAWISESPSAPQSPSFLFNRIPNASPVQMQAKIFPLLSQFQPLSRLEFQSQPFIPTIPQFQLTPLAQVQTQAPLKPSLPIETHSSPPQIRACGIRCPLAPNKPQSLTPTEIPHSEQSLLLKQLENAWDLSSEVKRSQEVSSVFTSKFPEDSWVGSILPENFPISPELRKQLEQHLQKWLIQHRWELPQRIQESLEISQLQEEFPRTRQAKAKHGPSRPSSFIGESSKDAQKVGFRRSQDLGKGLGHILGKVPKDLSGSSESSLVKFQEENPEESESDLSLLKNDLGINLLRSLDKDLEKILKGHLVRKLGKVAKDLIPKDVNQSRLTVSHASLKSDTHMETRNLGILKSWAPCVNTSHRVSFLDPDTRDGLEAHIIRFRVKHRWGLPLKVLKPINLFKLKKAQPSPIRQFSFCPSATYVSEARSTVRFAEFLGKPPQAHSRERVITKESAPTLVRSLLGPSPVSEEAQRVLGRIPASEYHGPSKASLTGREARPPSRSLTVSLMDTSQGIPILEANLGMQSLRAEEAREAVEPKESSALKPQSRVILGTKMLTKCQTTNVHMTSLRAPGTSKISLLPRMSAFQHPGEPCLNTEVAHEFKSKVKLQSDNQLQGCPKHMFLAAKNLSSRVSQYPPPKVPTGDRLASQALSGPMAAPRSRLGQQEPQTSKLQDSWKSQSKMIATISKRRDCRGPKPGEHEESFKELGTSQAGNMSHPAQGRGIIGSKKQGPPESPFRKRMRLLFEWIFPSKKVKSQDALQKGKPVSAITESQGPIKSKSILKSETAEAQALMTAVGHILEEKMAIHHGHHATKLNDHRQELQASVCGCSCYHKFLFYPEQGKMVGYRACSHQANFKDQSCSFREREVRHQQSSKSVRFNDEPTGLRQPPTLSPKKTLSPVSPCQHGSRMPGALARHQHCPRHCCLRGGVLPSKP", "length": 1315, "header": "tr|A0A5G2QT36-1|A0A5G2QT36_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QT36-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QT36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36/entry", "sequence": { "sequence": "MPPRVSFYCTCPSGPAPQSLRRCPPLSGLPSPPGLIHSWLQLLSPISYSHLGRLPDKGSFHLLSCQETPGETCEAVPAGVCQPCGEPVEDAAPAIPPLAPLSKHPPPLASTLLPGPTTSSASVHSHTSLNASQPPEPSVPLASLSPWPLDLSSPPPCPPDSEACPPPPTASSAPTPQDSTPTLTQDDPSMALPLGTVPQNLSPHNPGSTSLAPAISGFGRSGCPPSALSRWQAAAKALCLSRSSQGKSQEKHLSYHPPDASFSVGPSDREMEASSPSLLSSDDQKLLEIQMTKTVEIKIWKEKEKDGSNLKQMSPDCHLDSLGSMLKALGADQNTTIAQTFWNTKDKPEQLPCPQQLSYPNHLQQEYNQLFWGLPSLHSESLVATAWISESPSAPQSPSFLFNRIPNASPVQMQAKIFPLLSQFQPLSRLEFQSQPFIPTIPQFQLTPLAQVQTQAPLKPSLPIETHSSPPQIRACGIRCPLAPNKPQSLTPTEIPHSEQSLLLKQLENAWDLSSEVKRSQEVSSVFTSKFPEDSWVGSILPENFPISPELRKQLEQHLQKWLIQHRWELPQRIQESLEISQLQEEFPRTRQAKAKHGPSRPSSFIGESSKDAQKVGFRRSQDLGKGLGHILGKVPKDLSGSSESSLVKFQEENPEESESDLSLLKNDLGINLLRSLDKDLEKILKGHLVRKLGKVAKDLIPKDVNQSRLTVSHASLKSDTHMETRNLGILKSWAPCVNTSHRVSFLDPDTRDGLEAHIIRFRVKHRWGLPLKVLKPINLFKLKKAQPSPIRQFSFCPSATYVSEARSTVRFAEFLGKPPQAHSRERVITKESAPTLVRSLLGPSPVSEEAQRVLGRIPASEYHGPSKASLTGREARPPSRSLTVSLMDTSQGIPILEANLGMQSLRAEEAREAVEPKESSALKPQSRVILGTKMLTKCQTTNVHMTSLRAPGTSKISLLPRMSAFQHPGEPCLNTEVAHEFKSKVKLQSDNQLQGCPKHMFLAAKNLSSRVSQYPPPKVPTGDRLASQALSGPMAAPRSRLGQQEPQTSKLQDSWKSQSKMIATISKRRDCRGPKPGEHEESFKELGTSQAGNMSHPAQGRGIIGSKKQGPPESPFRKRMRLLFEWIFPSKKVKSQDALQKGKPVSAITESQGPIKSKSILKSETAEAQALMTAVGHILEEKMAIHHGHHATKLNDHRQELQASVCGCSCYHKFLFYPEQGKMVGYRACSHQANFKDQSCSFREREVRHQQSSKSVRFNDEPTGLRQPPTLSPKKTLSPVSPCQHGSRMPGALARHQHCPRHCCLRGGVLPSKP", "length": 1315, "header": "tr|A0A5G2QT36-1|A0A5G2QT36_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QT36-1" }, "locus": { "chromosome": "1", "start_pos": 195855154, "end_pos": 195850392, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081088.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081088.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061330.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061330.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 117, "start_aa": "Thr", "end_pos": 117, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr117", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 169, "start_aa": "Thr", "end_pos": 169, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr169", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1007, "end_pos": 1009, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1094, "end_pos": 1096, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QT36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" }, { "id": "PF14650", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPATA31", "eco_id": "ECO_0000259", "start_pos": 355, "end_pos": 709, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QT36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT36" }, { "id": "PF15371", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15371" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPATA31-like", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 100, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 117, 169 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1007, "end_pos": 1009 }, { "start_pos": 1094, "end_pos": 1096 }, { "start_pos": 130, "end_pos": 132 }, { "start_pos": 200, "end_pos": 202 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 739, "end_pos": 741 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QT86-1", "uniprot_ac": "A0A5G2QT86", "uniprot_id": "A0A5G2QT86_PIG", "mass": { "chemical_mass": 60444.0, "monoisotopic_mass": 60444.0 }, "refseq": {}, "gene_names": [ { "name": "KRT6A", "type": "recommended", "evidence": [ { "id": "A0A5G2QT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ] } ], "protein_names": [ { "name": "Keratin 6A", "type": "synonym", "evidence": [ { "id": "A0A5G2QT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT6A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86", "locus": {} } ], "crossref": [ { "id": "A0A5G2QT86", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT86", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000248", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000248", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AZL3", "url": "https://www.uniprot.org/uniprotkb/A0A287AZL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMY1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCRSTVRSQSSGRRGFSASSARVPGVCRSGFSTVSVSRSRGSGGLSGVCGGAGFGSRSLYSLGGSKRISIAGGYGGGVGAGFGFGGGARSGFGFGAGSGGFGLGGGAGFVGGYGGSGFPVCPPGGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGIKTVRQNLEPLFEQYINDLRRQLDSILGERGRLDSELRSMQDLVVDFKNKYEDEINKRTAAENEFVNLKKDVDTAYMNKVELQAKVDSLTDEINFLRAFYDAELAQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIAQRSRAEAESWYQSKYEELRVTAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQCASLQSAIADAEQRGEMALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRMNGSACLVLILSLPSTAVVQSTVSSGYGGASGVGSGLGLGGGSGYSYSSGHGLGGGFSSGSGRAIGGGLSSSGGSSSTIKYTTTTSSSSSRKGYRH", "length": 563, "header": "tr|A0A5G2QT86-1|A0A5G2QT86_PIG Isoform 1 of Keratin 6A OS=Sus scrofa OX=9823 GN=KRT6A PE=3 SV=1 CANONICAL=A0A5G2QT86-1" }, "isoforms": [ { "isoform_ac": "A0A287AZL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZL3/entry", "sequence": { "sequence": "MSCRSTVRSQSSGRRGFSASSARVPGVCRSGFSTVSVSRSRGSGGLSGVCGGAGFGSRSLYSLGGSKRISIAGGYGGGVGAGFGFGGGARSGFGFGAGSGGFGLGGGAGFVGGYGGSGFPVCPPGGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGIKTVRQNLEPLFEQYINDLRRQLDSILGERGRLDSELRSMQDLVVDFKNKYEDEINKRTAAENEFVNLKKDVDTAYMNKVELQAKVDSLTDEINFLRAFYDAELAQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIAQRSRAEAESWYQSKYEELRVTAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQCASLQSAIADAEQRGEMALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRLNGEGVGQVNISVVQSTVSSGYGGASGVGSGLGLGGGSGYSYSSGHGLGGGFSSGSGRAIGGGLSSSGGSSSTIKYTTTTSSSSSRKGYRH", "length": 558, "header": "tr|A0A287AZL3-1|A0A287AZL3_PIG Computationally mapped isoform of Keratin 6A OS=Sus scrofa OX=9823 GN=KRT6A PE=3 SV=2 CANONICAL=A0A5G2QT86-1" }, "locus": { "chromosome": "5", "start_pos": 17835306, "end_pos": 17830525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049272.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049272.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049602.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049602.2" } ] } }, { "isoform_ac": "A0A5G2QT86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86/entry", "sequence": { "sequence": "MSCRSTVRSQSSGRRGFSASSARVPGVCRSGFSTVSVSRSRGSGGLSGVCGGAGFGSRSLYSLGGSKRISIAGGYGGGVGAGFGFGGGARSGFGFGAGSGGFGLGGGAGFVGGYGGSGFPVCPPGGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGIKTVRQNLEPLFEQYINDLRRQLDSILGERGRLDSELRSMQDLVVDFKNKYEDEINKRTAAENEFVNLKKDVDTAYMNKVELQAKVDSLTDEINFLRAFYDAELAQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIAQRSRAEAESWYQSKYEELRVTAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQCASLQSAIADAEQRGEMALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRMNGSACLVLILSLPSTAVVQSTVSSGYGGASGVGSGLGLGGGSGYSYSSGHGLGGGFSSGSGRAIGGGLSSSGGSSSTIKYTTTTSSSSSRKGYRH", "length": 563, "header": "tr|A0A5G2QT86-1|A0A5G2QT86_PIG Isoform 1 of Keratin 6A OS=Sus scrofa OX=9823 GN=KRT6A PE=3 SV=1 CANONICAL=A0A5G2QT86-1" }, "locus": { "chromosome": "5", "start_pos": 17835306, "end_pos": 17830525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090262.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090262.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065209.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065209.2" } ] } }, { "isoform_ac": "A0A8W4FMY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMY1/entry", "sequence": { "sequence": "MSCRSTVRSQSSGRRGFSASSARVPGVCRSGFSTVSVSRSRGSGGLSGVCGGAGFGSRSLYSLGGSKRISIAGGYGGGVGAGFGFGGGARSGFGFGAGSGGFGLGGGAGFVGGYGGSGFPVCPPGGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGIKTVRQNLEPLFEQYINDLRRQLDSILGERGRLDSELRSMQDLVVDFKNKLGRRVHLTVSFGLLSQDVDTAYMNKVELQAKVDSLTDEINFLRAFYDAELAQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIAQRSRAEAESWYQSKYEELRVTAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQCASLQSAIADAEQRGEMALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRMNGSACLVLILSLPSTAVVQSTVSSGYGGASGVGSGLGLGGGSGYSYSSGHGLGGGFSSGSGRAIGGGLSSSGGSSSTIKYTTTTSSSSSRKGYRH", "length": 559, "header": "tr|A0A8W4FMY1-1|A0A8W4FMY1_PIG Computationally mapped isoform of Keratin 6A OS=Sus scrofa OX=9823 GN=KRT6A PE=3 SV=1 CANONICAL=A0A5G2QT86-1" }, "locus": { "chromosome": "5", "start_pos": 17835306, "end_pos": 17830525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104075.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104075.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079670.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QT86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT86" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 468, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 469, "end_pos": 471 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QT94-1", "uniprot_ac": "A0A5G2QT94", "uniprot_id": "A0A5G2QT94_PIG", "mass": { "chemical_mass": 20399.0, "monoisotopic_mass": 20399.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Reverse transcriptase zinc-binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QT94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94", "locus": {} } ], "crossref": [ { "id": "A0A5G2QT94", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050058", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050058", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QT94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKWAKNLNRHFSKEDIQLANRHMKKCSTSLIIREMQIKTTMRYYLTPVRMAMINMSANNKCWRGYGEKGTLLHCWWECKLVQPLWKTVWRYLRKLNTELPYEPAIPLSGKYLDKTLIQKDTCTPIPTAALFTIAKTWKQHKCPLIDEWIKKMWYIYTVEYYQAIKRTK", "length": 169, "header": "tr|A0A5G2QT94-1|A0A5G2QT94_PIG Isoform 1 of Reverse transcriptase zinc-binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QT94-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QT94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94/entry", "sequence": { "sequence": "MEKWAKNLNRHFSKEDIQLANRHMKKCSTSLIIREMQIKTTMRYYLTPVRMAMINMSANNKCWRGYGEKGTLLHCWWECKLVQPLWKTVWRYLRKLNTELPYEPAIPLSGKYLDKTLIQKDTCTPIPTAALFTIAKTWKQHKCPLIDEWIKKMWYIYTVEYYQAIKRTK", "length": 169, "header": "tr|A0A5G2QT94-1|A0A5G2QT94_PIG Isoform 1 of Reverse transcriptase zinc-binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QT94-1" }, "locus": { "chromosome": "2", "start_pos": 85893064, "end_pos": 85892558, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072161.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072161.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061385.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061385.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QT94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QT94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVZ8-1", "uniprot_ac": "A0A5G2QVZ8", "uniprot_id": "A0A5G2QVZ8_PIG", "mass": { "chemical_mass": 89745.0, "monoisotopic_mass": 89745.0 }, "refseq": {}, "gene_names": [ { "name": "VEPH1", "type": "recommended", "evidence": [ { "id": "A0A5G2QVZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ] } ], "protein_names": [ { "name": "Ventricular zone expressed PH domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QVZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Interacts with TGF-beta receptor type-1 (TGFBR1) and inhibits dissociation of activated SMAD2 from TGFBR1, impeding its nuclear accumulation and resulting in impaired TGF-beta signaling. May also affect FOXO, Hippo and Wnt signaling.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8#function" }, { "database": "UniProtKB", "id": "ARBA00059998", "url": "https://www.uniprot.org/uniprotkb/ARBA00059998#function" }, { "database": "UniProtKB", "id": "A0A5G2QT95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT95#function" }, { "database": "UniProtKB", "id": "F1SJM1", "url": "https://www.uniprot.org/uniprotkb/F1SJM1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VEPH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8", "locus": { "chromosome": "13", "start_pos": 97075270, "end_pos": 97366031, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011726", "url": "https://www.ensembl.org/id/ENSSSCG00000011726" } ] } } ], "crossref": [ { "id": "A0A5G2QVZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011726", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011726", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01264", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01264", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512989", "url": "https://www.ncbi.nlm.nih.gov/gene/100512989", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WIRIMLL", "url": "https://omabrowser.org/oma/group/WIRIMLL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QT95", "url": "https://www.orthodb.org/?gene=A0A5G2QT95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21630", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21630", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21630:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21630:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QT95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJM1", "url": "https://www.uniprot.org/uniprotkb/F1SJM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIEKHAKALVGLWDSCLEHHLRPSGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPVAVKFLHRGNKELCRNMSNYLSLAAITKADLLVDHTEVIVKSILQGNATLLRVLPAVYDKQPQPINKHLTELLALMYQLEQPEQYHLLRLLHVAAKRKQLEVVQKCIPFLIGHLKNSMHNDVILSILIEIAGYEPVALNSFLPVLKEIGERFPYLIGQMARIYGTVGRVDEERARSCLPFLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLETAMARSDRRKTSNEIEFLEELEETKFTVDENEDHEKLQVKIQAFEDKITAENNTPGSIRRYSLDQVSKEGRKDIRFNRSKSLALHTVLTSALSSEDGDAVESADTPASISLSEIDPLGQGRDRSPFKADADGSQLVNSSVSHPSIMHIESENLPEMVKENHQEETPETTTSSVEYHDKLYLYLKENLSKVKAYALEIRKKIPVPDQCTIEDSVQSCVAKLFFSCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQDLDQVQLHLEEVRFFDVFGFSEAAGAWQCFMCNNPERATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKVVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREITTYL", "length": 788, "header": "tr|A0A5G2QVZ8-1|A0A5G2QVZ8_PIG Isoform 1 of Ventricular zone expressed PH domain containing 1 OS=Sus scrofa OX=9823 GN=VEPH1 PE=3 SV=1 CANONICAL=A0A5G2QVZ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QT95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT95/entry", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIEKHAKALVGLWDSCLEHHLRPSGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPVAVKFLHRGNKELCRNMSNYLSLAAITKADLLVDHTEVIVKSILQGNATLLRVLPAVYDKQPQPINKHLTELLALMYQLEQPEQYHLLRLLHVAAKRKQLEVVQKCIPFLIGHLKNSMHNDVILSILIEIAGYEPVALNSFLPVLKEIGERFPYLIGQMARIYGTVGRVDEERARSCLPFLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLETAMARSDRRKTSNEIEFLEELEETKFTVDENEDHEKLQVKIQAFEDKITAENNTPGSIRRYSLDQVSKEGRKDIRFNRSKSLALHTVLTSALSSEDGDAVESADTPASISLSEIDPLGQGRDRSPFKADADGSQLVNSSVSHPSIMHIESENLPEMVKENHQEETPETTTSSVEYHDKLYLYLKENLSKVKAYALEIRKKIPVPDQCTIEDSVQSCVAKLFFSCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSRSVQFLRALWEKTQAEGAHSFETAMMESTFPQQKDLDQVQLHLEEVRFFDVFGFSEAAGAWQCFMCNNPERATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKVVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREITTYL", "length": 833, "header": "tr|A0A5G2QT95-1|A0A5G2QVZ8_PIG Computationally mapped isoform of Ventricular zone expressed PH domain containing 1 OS=Sus scrofa OX=9823 GN=VEPH1 PE=3 SV=1 CANONICAL=A0A5G2QVZ8-1" }, "locus": { "chromosome": "13", "start_pos": 97358686, "end_pos": 97079863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068766.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068766.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068146.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068146.1" } ] } }, { "isoform_ac": "A0A5G2QVZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8/entry", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIEKHAKALVGLWDSCLEHHLRPSGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPVAVKFLHRGNKELCRNMSNYLSLAAITKADLLVDHTEVIVKSILQGNATLLRVLPAVYDKQPQPINKHLTELLALMYQLEQPEQYHLLRLLHVAAKRKQLEVVQKCIPFLIGHLKNSMHNDVILSILIEIAGYEPVALNSFLPVLKEIGERFPYLIGQMARIYGTVGRVDEERARSCLPFLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLETAMARSDRRKTSNEIEFLEELEETKFTVDENEDHEKLQVKIQAFEDKITAENNTPGSIRRYSLDQVSKEGRKDIRFNRSKSLALHTVLTSALSSEDGDAVESADTPASISLSEIDPLGQGRDRSPFKADADGSQLVNSSVSHPSIMHIESENLPEMVKENHQEETPETTTSSVEYHDKLYLYLKENLSKVKAYALEIRKKIPVPDQCTIEDSVQSCVAKLFFSCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQDLDQVQLHLEEVRFFDVFGFSEAAGAWQCFMCNNPERATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKVVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREITTYL", "length": 788, "header": "tr|A0A5G2QVZ8-1|A0A5G2QVZ8_PIG Isoform 1 of Ventricular zone expressed PH domain containing 1 OS=Sus scrofa OX=9823 GN=VEPH1 PE=3 SV=1 CANONICAL=A0A5G2QVZ8-1" }, "locus": { "chromosome": "13", "start_pos": 97358686, "end_pos": 97079863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091065.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091065.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068325.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068325.1" } ] } }, { "isoform_ac": "F1SJM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJM1/entry", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSNYNRPPVMALAIPVAVKFLHRGNKELCRNMSNYLSLAAITKADLLVDHTEVIVKSILQGNATLLRVLPAVYDKQPQPINKHLTELLALMYQLEQPEQYHLLRLLHVAAKRKQLEVVQKCIPFLIGHLKNSMHNDVILSILIEIAGYEPVALNSFLPVLKEIGERFPYLIGQMARIYGTVGRVDEERARSCLPFLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLETAMARSDRRKTSNEIEFLEELEETKFTVDENEDHEKLQVKIQAFEDKITAENNTPGSIRRYSLDQVSKEGRKDIRFNRSKSLALHTVLTSALSSEDGDAVESADTPASISLSEIDPLGQGRDRSPFKADADGSQLVNSSVSHPSIMHIESENLPEMVKENHQEETPETTTSSVEYHDKLYLYLKENLSKVKAYALEIRKKIPVPDQCTIEDSVQSCVAKLFFSCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSRSVQFLRALWEKTQAEGAHSFETAMMESTFPQQKDLDQVQLHLEEVRFFDVFGFSEAAGAWQCFMCNNPERATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKVVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREITTYL", "length": 761, "header": "tr|F1SJM1-1|F1SJM1_PIG Computationally mapped isoform of Ventricular zone expressed PH domain containing 1 OS=Sus scrofa OX=9823 GN=VEPH1 PE=3 SV=4 CANONICAL=A0A5G2QVZ8-1" }, "locus": { "chromosome": "13", "start_pos": 97358686, "end_pos": 97079863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012836.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012836.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012496.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012496.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M2P6-1", "protein_name": "Protein melted homolog", "gene_name": "Veph1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDAEIEDSLTEALEQIKVISSSLDYQTNNNDQAVVEICITRITTAIRETESIEKHARALVGLWDSCLEHNLRPAGKDEDTPHAKIASDIMSCILQNYNRTPVMVLAVPIAVKFLHRGNKELCRNMSNYLSLAAITKADVLADHTEGIIKSILQGNAMLLRVLPAVYEKQPQPINRHLAELLALMSQLEQTEQYHLLRLLHVAAKRKDVEVVQKCIPFLIRHLKESTHNDFILNILIEIAGYEPLTLSGFLPMLKEIGERFPYLTGQIARIFGAVGHADEERARSCLRYLISQLANMEHSFHHILLLEIKSITDTFSSILGPHSRDIFRMSNSFTNIAKLLSRHLENGKAGNGRRKTSTEVGVPEKVGGAKTKEPESEDHEKLQVKIQAFEDKINSESNTPASVRRNSLDHVSKEEQRNIRFSRSRSLALNTVLTTGMRAEDEDAEERAGVHASISLSEIDPLIHGIGKLPLKIDTHGSQLRNSSASHPSIIHREPENMPKTVKENIQEEIPETATSPVEYQDKLYLHLKENFSKVKAYAMEITKKVPVPDQCTIEETMRSCVAKLFFTCSLKGHYCLYSKSSFTLISQAPQPWIQIMFLFQQSLFPEPLSIQNGSVQFLKGLWEKTQASGTHSFEDAMTESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVALAQAKERESREVTTYL", "length": 833 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SHU8-1", "protein_name": "Ventricular zone expressed PH domain containing 1", "gene_name": "VEPH1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHGPGPAGSPLIIKPLSMHQLFRLVLGQKDLSRAGDLFSLEDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPSGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNAMLLRVLPAVYEKQPQPINRHLTELLGLMSQLEQPEQYHLLRLLHVAAKRKQLEVVQKCIPFLIGQLKDSTHNDIILSILIEIAGYKPMALNSFLPMLKEIAERSPYLIGQMARIYGAVGHVDEERARSCLPFLVSQLASMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAISKLLTRQLETTKARNDRRKPSTEIEFLEKLEETKLTVDENEDHEELQVKIQAFEDKINAEDNTPGSLRRYSLDQVSKEERKGIRFNRSKSLALHTVLTNSLSAEDGEAIESKDMPASISLSEIEPLGQGHEMSPFKVDTDGSQLGNSSVSHQSIIHVASENLPEAVKKNYQEETPETTTSPVEYHDKLYLHLKENFSKVKAYAVEMVKKIPVPDQCTIEDSVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQEGGAHSFETAMIESTFPQQKDLDQVQLHLEEVRFFDVFGFSEAAGAWQCFMCNNPERATVINQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKVVAKKRRDRSLPRAFEIFTDNKTYVFKAKNEKNAEEWLQCINVAVAQAKERESREVTTYL", "length": 850 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A1A535-1", "protein_name": "Ventricular zone-expressed PH domain-containing protein 1", "gene_name": "Veph1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHQLFRLVLGQKDLSKAGDLFSLDDAEIEDSLTEALEQIKVISSSLDYQTNNNDQAVVEICITRITTAIRETESIEKHARALVGLWDSCLEHNLRPAGKDEDTPHAKIASDIMSCILQNYNRTPVMVLAVPIAVKFLHRGSKELCRNMSNYLSLAAITKADLLADHTEGIIKSILQGNAMLLRVLPAVYEKQPQPINRHLAELLALMSQLEQTEQYHLLRLLHVAAKRKDVEVVQKCVPFLIRNLKDSTYNDIILNILIEIAGHEPLALNSFLPMLKEIAEQFPYLTGQMARIFGAVGHVDEERARSCLRYLVSQLANMEHPFHHILLLEIKSITDAFSSILGPHSRDIFRMSNSFTNIAKLLSRQLENSKADSSRRKTSTEVSIPEKLRELNSMEPESEDHEKLQVKIQAFEDKINAESNTPGSGRRYSLDHISKEERKSIRFSRSRSLALNTVLTNGVSVEDNEVEEKAGMHASISLSQIDPLSHGIGKLPFKTDTHGSPLRNSSASHPSIIHTEPETMPETFKENIQEEILEAATSPIEYQDKLYLHLRENLSKVKAYALEIAKKVPIPDQCTIEDTMRSCVAKLFFTCSLKGHYCLYSKSSFILVSQAPQPWIQVMFLSQQSLFPEPLSIQSGSVQFLKALWEKTQDTGAHSFEVAMTESTFPQQKDLEQLQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTHYFTLAGNQLLFQKGKSKDDPDDSPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDSKTYVFKAKDEKNAEEWLQCINVALAQAKERESREVTTYL", "length": 833 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14D04-1", "protein_name": "Ventricular zone-expressed PH domain-containing protein homolog 1", "gene_name": "VEPH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIRETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPINRHLTELLALMSQLEQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIGERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIFRMSNSFTAIAKLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGSNTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGNDKLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLSKVKAYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAHSFETAMMESTFPQQKDLDQVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVAVAQAKERESREVTTYL", "length": 833 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5PQS3-1", "protein_name": "Ventricular zone-expressed PH domain-containing protein homolog 1", "gene_name": "Veph1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHQLFRLVLGQKDLSRAGDLFSLDDAEIEDSLTEALEQIKVISSSLDYQTNNNDQAVVEICITRITTAIRETESIEKHARALVGLWDSCLEHNLRPAGKDEDTPHAKIASDIMSCILQNYNRTPVMVLAVPIAVKFLHRGSKELCRNMSNYLSLAAITKADLLADHTEGIVKSILQGNAMLLRVLPAVYEKQPQPINRHLAELLALMSQLEQTEQYHLLRLLHVAAKRKDVEVVQKCVPFLIRNLKESTYNDIILNILIEIAGHEPLALNSFLPMLKEIAEQFPYLTGQMARIFGAVGHVDEERARSCLRYLVSQLANMEHSFHHILLLEIKSLTDAFSSILGPHSRDIFRMSNSFTNIAKLLSRQLENSKAESGRRRTGTEVSFPEKFREPKTMEPKSEDHEKLQVKIQAFEDKINAESHTPGSVRRYSLDHVSKEERKNVRFSRSRSLALNTVLTNSVNVEDGEIEGKTGMHASISLSEIDPPGHGIGKVPFKTDTHGSQLRNSSASHPSIIHSEPENMPETFKENVQEEIPEAAISPVEYQDKLYLHLKENLSKVKAYALEIAKKVPIPDQCTIEDNTRSCVAKLFFTCSLKGHYCLYSKSSFTLVSQAPQPWIQIMFLFQQSLFPEPLSIQSGSVQFLKALWEKTQGTGTHSFEVAMTESTFPQQKDLDQLQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVINQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAGNQLLFQKGKSDDPDDSPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCINVALAQAKERESREVTTYL", "length": 832 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VS24-3", "protein_name": "Protein melted", "gene_name": "melt", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHELFNKVLAKRDLSRAGDLFSVPDADIVDDITEVLSEISPIISHADYVKNNNDQSVVEICVTRVLSCIRETKTAERYCAALVDLLRTCLLWNLQPSGTTKEEPPHAKIAADIISSIFLNYDKKELMKIALPVAVQFLPKGNRELSRNLASYLSLAAIDHAGLLSPHTESVMESILSGNYGLLRVLSQVYEVAPEAVTPHAPLLMPLLPQCDPQERMAVFQLYLLIVQKSPEVLESCVPQLCGSLLDSDTSSITMQILLKLSQHSPSLLVDHFEQLRLAAKTNPGTIPLCAQIMTTAGIGSKETAQQALDFVLEHLPTQALLQQEATRLCSAYPVLFTDKVLACVRQKNAALSSQQDVGNGLANKTSGGVTIVSLNSSSPSPPLKPVPVGAPAINTTIVQPASVVSATPTPPPSSASAPIASSTPVSAATPTPQHAGYTRRVKLGDSRSTGRLHPASNTHRSVTRLNVASGSVGGLHKSMTRLSNSQINQQPGGSSNGNVVVQSGATPKTPTGLSNPPVTPVPPLSNNVVITGHNRHGIPVTSGGVTVTTSPSKVRPHSQGPSTLLNSSTVLMKYSTDALNQSVGSISIPQSAAVATLPSTQTQNAVSVHHASPALPQSASNGHAKSVMKLPVNGNSEVIVSGPTTNVAPRRSDNTSRTLLNANSVMDQRMSTFEPYQIMRDPVQQFCEKNFNSIKSYMDEVSQHLPPPTRCSIEVSNEFAERRTKKVAKLHFACQIRGPHCLYSKTCFTMRTRNPKTWIHMMFLDFQVRHFVKEKCVLSTRESGISNLKNIWQILKCENRSFTELVTSQFPQVKDREILVNELRHSGFLDVFEVSKTDKSNPNCNELEYQWGCFLCNHPDKAVGFLNGSNQPMIEGQLKEKKGKWRLFRRWRTRYFTLSGAHLSCKGSSGGESIDVNQIRSVKVSRGARNIPKAFEIFTADQTLILKPKDGKNAEEWVQCLSIVVAHSQARDNPTAKTNSLPARSIGSSKPSF", "length": 994 }, "evidence": [ { "id": "A0A5G2QVZ8", "url": "https://omabrowser.org/oma/group/A0A5G2QVZ8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol-5-phosphate binding", "id": "GO:0010314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010314", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "pmid": "" }, { "name": "negative regulation of transforming growth factor beta receptor signaling pathway", "id": "GO:0030512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030512", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "pmid": "" }, { "name": "negative regulation of SMAD protein signal transduction", "id": "GO:0060392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060392", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 554, "end_pos": 556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 788, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVZ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVZ8" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 671, "end_pos": 774, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 554, "end_pos": 556 }, { "start_pos": 749, "end_pos": 751 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTC7-1", "uniprot_ac": "A0A5G2QTC7", "uniprot_id": "A0A5G2QTC7_PIG", "mass": { "chemical_mass": 59883.0, "monoisotopic_mass": 59883.0 }, "refseq": {}, "gene_names": [ { "name": "COQ8B", "type": "recommended", "evidence": [ { "id": "A0A5G2QTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ] } ], "protein_names": [ { "name": "NUMB like endocytic adaptor protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COQ8B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7", "locus": { "chromosome": "6", "start_pos": 48919520, "end_pos": 48938111, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055235", "url": "https://www.ensembl.org/id/ENSSSCG00000055235" } ] } } ], "crossref": [ { "id": "A0A5G2QTC7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023228", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023228", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13970", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13970", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43851", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43851", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43851:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43851:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2142789", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142789", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLEVGGSLRGTCGHLGRTIGLPCGALGPGPRCWGPRGGSWAQKLHQDGPGRGLGEEDIRKAREARIRKTPRPQLSDRARERKVPASRISRLANFGGLAVSLGLGALAEVAKNSLPGGRPQSEGGSRPGSSPFLSEANAERIVQTLCTVRGAALKVGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMLRVLEEELGKDWQAKVASLEEVPFAAASIGQVHQGVLRDGTEVAVKIQYPGVAQSIQSDVQNLLAVLKMSVALPEGLFAEQSLQALQRELAWECDYRREAACAENFRQLLADDPFFRVPAVIQELCTTRVLGMELAGGVPLDQCQGLSQDIRNQICFQLLRLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVMAAANGDRDRVLQKSRDLRFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGAGDTARRVQGLIPVLLQHRLRPPPEETYALHRKLAGAFLACSRLRAHIACRDLFQDTYHRYWASPGVATTQSLLTRGDVCSDPS", "length": 542, "header": "tr|A0A5G2QTC7-1|A0A5G2QTC7_PIG Isoform 1 of NUMB like endocytic adaptor protein OS=Sus scrofa OX=9823 GN=COQ8B PE=3 SV=2 CANONICAL=A0A5G2QTC7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7/entry", "sequence": { "sequence": "MWLEVGGSLRGTCGHLGRTIGLPCGALGPGPRCWGPRGGSWAQKLHQDGPGRGLGEEDIRKAREARIRKTPRPQLSDRARERKVPASRISRLANFGGLAVSLGLGALAEVAKNSLPGGRPQSEGGSRPGSSPFLSEANAERIVQTLCTVRGAALKVGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMLRVLEEELGKDWQAKVASLEEVPFAAASIGQVHQGVLRDGTEVAVKIQYPGVAQSIQSDVQNLLAVLKMSVALPEGLFAEQSLQALQRELAWECDYRREAACAENFRQLLADDPFFRVPAVIQELCTTRVLGMELAGGVPLDQCQGLSQDIRNQICFQLLRLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVMAAANGDRDRVLQKSRDLRFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGAGDTARRVQGLIPVLLQHRLRPPPEETYALHRKLAGAFLACSRLRAHIACRDLFQDTYHRYWASPGVATTQSLLTRGDVCSDPS", "length": 542, "header": "tr|A0A5G2QTC7-1|A0A5G2QTC7_PIG Isoform 1 of NUMB like endocytic adaptor protein OS=Sus scrofa OX=9823 GN=COQ8B PE=3 SV=2 CANONICAL=A0A5G2QTC7-1" }, "locus": { "chromosome": "6", "start_pos": 48938108, "end_pos": 48919520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061415.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061415.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2142789", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142789", "resource": "Reactome", "description": "Ubiquinol biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ubiquinone biosynthetic process", "id": "GO:0006744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006744", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "pmid": "" }, { "name": "cerebellar Purkinje cell layer morphogenesis", "id": "GO:0021692", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021692", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 542, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTC7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTC7" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 179, "end_pos": 419, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTD6-1", "uniprot_ac": "A0A5G2QTD6", "uniprot_id": "A0A5G2QTD6_PIG", "mass": { "chemical_mass": 17739.0, "monoisotopic_mass": 17739.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "WALGCFLVLAIVNGAAKSIRVHVSFSRKDLSSYVPKSGIAGSYGTSIFSFLKYLHTVLHSGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLMMVILTGVRWYLTVVLICTALIVSDVENYFKCLLAICISSLEKCLFRSFAHFSIGLLFFIAVEMAHTSL", "length": 159, "header": "tr|A0A5G2QTD6-1|A0A5G2QTD6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTD6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6/entry", "sequence": { "sequence": "WALGCFLVLAIVNGAAKSIRVHVSFSRKDLSSYVPKSGIAGSYGTSIFSFLKYLHTVLHSGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLMMVILTGVRWYLTVVLICTALIVSDVENYFKCLLAICISSLEKCLFRSFAHFSIGLLFFIAVEMAHTSL", "length": 159, "header": "tr|A0A5G2QTD6-1|A0A5G2QTD6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTD6-1" }, "locus": { "chromosome": "14", "start_pos": 138665016, "end_pos": 138664540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081242.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081242.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067411.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067411.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 159, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTD6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTE6-1", "uniprot_ac": "A0A5G2QTE6", "uniprot_id": "A0A5G2QTE6_PIG", "mass": { "chemical_mass": 38034.0, "monoisotopic_mass": 38034.0 }, "refseq": {}, "gene_names": [ { "name": "IL18BP", "type": "recommended", "evidence": [ { "id": "A0A5G2QTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ] }, { "name": "RNF121", "type": "recommended", "evidence": [ { "id": "A0A5G2QTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ] }, { "name": "RNF121", "type": "synonym", "evidence": [ { "id": "A0A5G2QTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ] } ], "protein_names": [ { "name": "Interleukin 18 binding protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF121", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6", "locus": { "chromosome": "9", "start_pos": 6587324, "end_pos": 6488806, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023796", "url": "https://www.ensembl.org/id/ENSSSCG00000023796" } ] } } ], "crossref": [ { "id": "A0A5G2QTE6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014800", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014800", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000023796", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023796", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16475", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16475", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525596", "url": "https://www.ncbi.nlm.nih.gov/gene/100525596", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525596", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525596", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ICADKIA", "url": "https://omabrowser.org/oma/group/ICADKIA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "K7GN89", "url": "https://www.orthodb.org/?gene=K7GN89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13407", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13407", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13407:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13407:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDV4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY6", "url": "https://www.uniprot.org/uniprotkb/F1SUY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GN89", "url": "https://www.uniprot.org/uniprotkb/K7GN89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GN89-1", "url": "https://www.uniprot.org/uniprotkb/K7GN89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVVEVDVGAGAAGERELDEVRRVETRPLCLTFRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWVLFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSKSGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCREKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINFVLGLE", "length": 328, "header": "tr|A0A5G2QTE6-1|A0A5G2QTE6_PIG Isoform 1 of Interleukin 18 binding protein OS=Sus scrofa OX=9823 GN=RNF121 PE=1 SV=1 CANONICAL=A0A5G2QTE6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6/entry", "sequence": { "sequence": "MAAVVEVDVGAGAAGERELDEVRRVETRPLCLTFRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWVLFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSKSGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCREKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINFVLGLE", "length": 328, "header": "tr|A0A5G2QTE6-1|A0A5G2QTE6_PIG Isoform 1 of Interleukin 18 binding protein OS=Sus scrofa OX=9823 GN=RNF121 PE=1 SV=1 CANONICAL=A0A5G2QTE6-1" }, "locus": { "chromosome": "9", "start_pos": 6586320, "end_pos": 6488820, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089496.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089496.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067421.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067421.1" } ] } }, { "isoform_ac": "A0A8W4FDV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDV4/entry", "sequence": { "sequence": "IKQDLNPGSGAPWQVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNFYSKSGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCREKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINFVLGLE", "length": 179, "header": "tr|A0A8W4FDV4-1|A0A8W4FDV4_PIG Computationally mapped isoform of Interleukin 18 binding protein OS=Sus scrofa OX=9823 GN=RNF121 PE=1 SV=1 CANONICAL=A0A5G2QTE6-1" }, "locus": { "chromosome": "9", "start_pos": 6586320, "end_pos": 6535914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095225.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095225.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077441.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077441.1" } ] } }, { "isoform_ac": "F1SUY6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY6/entry", "sequence": { "sequence": "TRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNFYSKSGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCREKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINFVLGLE", "length": 167, "header": "tr|F1SUY6-1|F1SUY6_PIG Computationally mapped isoform of Interleukin 18 binding protein OS=Sus scrofa OX=9823 GN=RNF121 PE=1 SV=4 CANONICAL=A0A5G2QTE6-1" }, "locus": { "chromosome": "9", "start_pos": 6586320, "end_pos": 6488878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016151.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016151.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015719.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015719.4" } ] } }, { "isoform_ac": "K7GN89-1", "url": "https://www.uniprot.org/uniprotkb/K7GN89/entry", "sequence": { "sequence": "MAAVVEVDVGAGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWVLFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSKSGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCREKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINFVLGLE", "length": 327, "header": "tr|K7GN89-1|K7GN89_PIG Computationally mapped isoform of Interleukin 18 binding protein OS=Sus scrofa OX=9823 GN=IL18BP PE=1 SV=3 CANONICAL=A0A5G2QTE6-1" }, "locus": { "chromosome": "9", "start_pos": 6586320, "end_pos": 6488820, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036334.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036334.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029340.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029340.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525596", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525596", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AJW1-1", "protein_name": "Ring finger protein 121", "gene_name": "Rnf121", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVVEVEVGGGAVAEREIDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWIFFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVNEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGISYILGLE", "length": 327 }, "evidence": [ { "id": "A0A5G2QTE6", "url": "https://omabrowser.org/oma/group/A0A5G2QTE6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MM46-1", "protein_name": "Ring finger protein 121", "gene_name": "RNF121", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAVVEVEVGAGAAGERELDEVDMSELSPEEQWKIEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINYILGLE", "length": 327 }, "evidence": [ { "id": "A0A5G2QTE6", "url": "https://omabrowser.org/oma/group/A0A5G2QTE6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1ND46-1", "protein_name": "Ring finger protein 175", "gene_name": "RNF175", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVLEVEVGGPGEREAEEVDLSHLSPEERWRVEHALMHAKHHGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTIKLYWWRFLVIWVLFSAVTAFVTFKATRKPLVQTTPRLVYKWFLLIYKMSYATGIVGYMAVMFTLFGLNLLFRIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSASGMPTKHLSDSVCAVCGQQIFVDVNEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGINYILGLE", "length": 325 }, "evidence": [ { "id": "A0A5G2QTE6", "url": "https://omabrowser.org/oma/group/A0A5G2QTE6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8R1Z9-1", "protein_name": "E3 ubiquitin ligase Rnf121", "gene_name": "Rnf121", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVVEVEVGGGALAERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWIFFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVNEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGLVQGISYILGLE", "length": 327 }, "evidence": [ { "id": "A0A5G2QTE6", "url": "https://omabrowser.org/oma/group/A0A5G2QTE6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H920-1", "protein_name": "E3 ubiquitin ligase RNF121", "gene_name": "RNF121", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVVEVEVGGGAAGERELDEVDMSDLSPEEQWRVEHARMHAKHRGHEAMHAEMVLILIATLVVAQLLLVQWKQRHPRSYNMVTLFQMWVVPLYFTVKLHWWRFLVIWILFSAVTAFVTFRATRKPLVQTTPRLVYKWFLLIYKISYATGIVGYMAVMFTLFGLNLLFKIKPEDAMDFGISLLFYGLYYGVLERDFAEMCADYMASTIGFYSESGMPTKHLSDSVCAVCGQQIFVDVSEEGIIENTYRLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWERPHVMYGQLLDWLRYLVAWQPVIIGVVQGINYILGLE", "length": 327 }, "evidence": [ { "id": "A0A5G2QTE6", "url": "https://omabrowser.org/oma/group/A0A5G2QTE6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 328, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTE6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE6" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 227, "end_pos": 277, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTF4-1", "uniprot_ac": "A0A5G2QTF4", "uniprot_id": "A0A5G2QTF4_PIG", "mass": { "chemical_mass": 12635.0, "monoisotopic_mass": 12635.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QTF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSFAVQKLLSLMESCLFIFVFIVNTLGGGSEKMLLWFMSESVWPVFSSKSFIASSLIFRSLIHFELIFVYTIRKCSHFILLHVAVQFPQHDLLKELSFLHYIFLPPLS", "length": 109, "header": "tr|A0A5G2QTF4-1|A0A5G2QTF4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTF4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4/entry", "sequence": { "sequence": "MVSFAVQKLLSLMESCLFIFVFIVNTLGGGSEKMLLWFMSESVWPVFSSKSFIASSLIFRSLIHFELIFVYTIRKCSHFILLHVAVQFPQHDLLKELSFLHYIFLPPLS", "length": 109, "header": "tr|A0A5G2QTF4-1|A0A5G2QTF4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTF4-1" }, "locus": { "chromosome": "5", "start_pos": 104187365, "end_pos": 104187039, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081627.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081627.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065280.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTF4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 109, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTF4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTF7-1", "uniprot_ac": "A0A5G2QTF7", "uniprot_id": "A0A5G2QTF7_PIG", "mass": { "chemical_mass": 7235.0, "monoisotopic_mass": 7235.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "KRAB domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QTF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000042823", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042823", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLVCFTDVAVLFSQEEWGLLDEAQKCLDHHVMLETLALLSSLGKPWSVQSHLQRSQLGTLLPTL", "length": 65, "header": "tr|A0A5G2QTF7-1|A0A5G2QTF7_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QTF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7/entry", "sequence": { "sequence": "MGLVCFTDVAVLFSQEEWGLLDEAQKCLDHHVMLETLALLSSLGKPWSVQSHLQRSQLGTLLPTL", "length": 65, "header": "tr|A0A5G2QTF7-1|A0A5G2QTF7_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QTF7-1" }, "locus": { "chromosome": "6", "start_pos": 61784519, "end_pos": 61783141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075160.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075160.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065478.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065478.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 65, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTF8-1", "uniprot_ac": "A0A5G2QTF8", "uniprot_id": "A0A5G2QTF8_PIG", "mass": { "chemical_mass": 14787.0, "monoisotopic_mass": 14787.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041158", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041158", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRISISIHVAVNGIILLFLMAEWYSIVYIYDIFLIHSFVNEHLGCFHVLAIVNSAAVNIQVHVSFSRKISSGYMPKSGISGSYGSSLFSFLRYLHTVFHGGCTNLHSCQQCRRVPFSPHPLQHLLFVDLMS", "length": 131, "header": "tr|A0A5G2QTF8-1|A0A5G2QTF8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QTF8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8/entry", "sequence": { "sequence": "MRISISIHVAVNGIILLFLMAEWYSIVYIYDIFLIHSFVNEHLGCFHVLAIVNSAAVNIQVHVSFSRKISSGYMPKSGISGSYGSSLFSFLRYLHTVFHGGCTNLHSCQQCRRVPFSPHPLQHLLFVDLMS", "length": 131, "header": "tr|A0A5G2QTF8-1|A0A5G2QTF8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QTF8-1" }, "locus": { "chromosome": "1", "start_pos": 99842576, "end_pos": 99842053, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086998.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086998.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065285.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065285.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTF8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTF8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTF9-1", "uniprot_ac": "A0A5G2QTF9", "uniprot_id": "A0A5G2QTF9_PIG", "mass": { "chemical_mass": 12346.0, "monoisotopic_mass": 12346.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTF9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046980", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046980", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSENVLPMFSSKSFMVSCLIFKSFSHFEFIFVHGVRVCSSSIDLHVAVQVFQQYLLKRLSFSHFMFVPPLSKISRPKVSGFISGFSLLFHWSVCLFWYQYLITMAL", "length": 106, "header": "tr|A0A5G2QTF9-1|A0A5G2QTF9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTF9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9/entry", "sequence": { "sequence": "MSENVLPMFSSKSFMVSCLIFKSFSHFEFIFVHGVRVCSSSIDLHVAVQVFQQYLLKRLSFSHFMFVPPLSKISRPKVSGFISGFSLLFHWSVCLFWYQYLITMAL", "length": 106, "header": "tr|A0A5G2QTF9-1|A0A5G2QTF9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTF9-1" }, "locus": { "chromosome": "13", "start_pos": 48122086, "end_pos": 48121769, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081637.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081637.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061445.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061445.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 106, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTF9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTH4-1", "uniprot_ac": "A0A5G2QTH4", "uniprot_id": "A0A5G2QTH4_PIG", "mass": { "chemical_mass": 2316.0, "monoisotopic_mass": 2316.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046912", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046912", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DYGNNRFTFGKGTQVVVTPSK", "length": 21, "header": "tr|A0A5G2QTH4-1|A0A5G2QTH4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTH4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4/entry", "sequence": { "sequence": "DYGNNRFTFGKGTQVVVTPSK", "length": 21, "header": "tr|A0A5G2QTH4-1|A0A5G2QTH4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTH4-1" }, "locus": { "chromosome": "7", "start_pos": 76483608, "end_pos": 76483546, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082279.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082279.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067451.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067451.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 21, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTH4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTI5-1", "uniprot_ac": "A0A5G2QTI5", "uniprot_id": "A0A5G2QTI5_PIG", "mass": { "chemical_mass": 22184.0, "monoisotopic_mass": 22184.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QTI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044956", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044956", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKEKKNEKSEEHLREIWDNIKHINNRIMLVPEGERQKGSEKIFEEIITENFPSMGKETLTQVEGAQRFPYKITHRRNAARHIPIKLTKIKFKEKILRTTREKQQVTHKGIPIRITADLSVETLQARGNGNIFFRFMKRKNLEPRILYPAKFSFRFDGEIKSFADKENLRKFSTSKPVLHQLLKELL", "length": 187, "header": "tr|A0A5G2QTI5-1|A0A5G2QTI5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTI5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5/entry", "sequence": { "sequence": "MNKEKKNEKSEEHLREIWDNIKHINNRIMLVPEGERQKGSEKIFEEIITENFPSMGKETLTQVEGAQRFPYKITHRRNAARHIPIKLTKIKFKEKILRTTREKQQVTHKGIPIRITADLSVETLQARGNGNIFFRFMKRKNLEPRILYPAKFSFRFDGEIKSFADKENLRKFSTSKPVLHQLLKELL", "length": 187, "header": "tr|A0A5G2QTI5-1|A0A5G2QTI5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTI5-1" }, "locus": { "chromosome": "5", "start_pos": 25978566, "end_pos": 25978006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070637.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070637.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065310.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065310.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTI5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 118, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QTI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI5" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 185, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTI6-1", "uniprot_ac": "A0A5G2QTI6", "uniprot_id": "A0A5G2QTI6_PIG", "mass": { "chemical_mass": 80092.0, "monoisotopic_mass": 80092.0 }, "refseq": {}, "gene_names": [ { "name": "WDR27", "type": "recommended", "evidence": [ { "id": "A0A5G2QTI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6" } ] } ], "protein_names": [ { "name": "WD repeat domain 27", "type": "synonym", "evidence": [ { "id": "A0A5G2QTI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6", "locus": { "chromosome": "1", "start_pos": 653704, "end_pos": 578480, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004008", "url": "https://www.ensembl.org/id/ENSSSCG00000004008" } ] } } ], "crossref": [ { "id": "A0A5G2QTI6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004008", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004008", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44525", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44525", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44525:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44525:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEPRETFSTSEGHGGEIVVETHMVESTESASHVHLACSRQHCAFPLDGDALCVWSTQDPSHQPLILRGHLRPVTAVAFGNAHPLLLCSASRDRVMMWNLGECGEKTLDGQPPRGTVLHALLGEVLCLRLSPDDRVAAVCAGDRILMLDAEFSQSRRALVELGRHRGPVTAAEFCPWQTHIIISASADRSFKVRGGRSFSVLVLDPGSQQLVAGSADGQLWVFSLAEGHHYRPVTRVDLRKQRDTFSTRKLSSCPEDSQLPPTKEEVEETLPVLSLAPCEFFFFPFNLSLSSRNASCLWIGSSAGLFIFNLANFELEAVLHFKDPSRSGLGKPCPQRGGSPSLLPCPVQAFCLLSALFGKKIALLEVDLAALLRSQPHPGVGARLSVLPRYAVLTVCFLFEYVYPAARAVVKDQPLVFHSKVTSSGYTAARLLFFQAGDGQRLACGLANHLSLVFSADLTGTPAVFSGHSGAVSTVCWSHDGRWLLSASQDGTLRVWSARRPELALCLGKDMFPKPVRSAQFYYLDAFILLSSGPEFQLLKCHISTSRDDVKRYKQKSRCTPVFRLPTTEAVEVTSLSAVNEFYSYLVLAAGRNRTLEVFDLNAGRSAALLAGVHSRPIHQICQNKGSSFATQHPQAYHLFATTATGDGVKLWDMRTLRCERRFEGHPNRCHPCGIAWSPCGRYVACGAEDRHAYLYETGSSTFSRRLAGHSDTVMAVAFSPSAVQVPSPVP", "length": 732, "header": "tr|A0A5G2QTI6-1|A0A5G2QTI6_PIG Isoform 1 of WD repeat domain 27 OS=Sus scrofa OX=9823 GN=WDR27 PE=4 SV=2 CANONICAL=A0A5G2QTI6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6/entry", "sequence": { "sequence": "MEEPRETFSTSEGHGGEIVVETHMVESTESASHVHLACSRQHCAFPLDGDALCVWSTQDPSHQPLILRGHLRPVTAVAFGNAHPLLLCSASRDRVMMWNLGECGEKTLDGQPPRGTVLHALLGEVLCLRLSPDDRVAAVCAGDRILMLDAEFSQSRRALVELGRHRGPVTAAEFCPWQTHIIISASADRSFKVRGGRSFSVLVLDPGSQQLVAGSADGQLWVFSLAEGHHYRPVTRVDLRKQRDTFSTRKLSSCPEDSQLPPTKEEVEETLPVLSLAPCEFFFFPFNLSLSSRNASCLWIGSSAGLFIFNLANFELEAVLHFKDPSRSGLGKPCPQRGGSPSLLPCPVQAFCLLSALFGKKIALLEVDLAALLRSQPHPGVGARLSVLPRYAVLTVCFLFEYVYPAARAVVKDQPLVFHSKVTSSGYTAARLLFFQAGDGQRLACGLANHLSLVFSADLTGTPAVFSGHSGAVSTVCWSHDGRWLLSASQDGTLRVWSARRPELALCLGKDMFPKPVRSAQFYYLDAFILLSSGPEFQLLKCHISTSRDDVKRYKQKSRCTPVFRLPTTEAVEVTSLSAVNEFYSYLVLAAGRNRTLEVFDLNAGRSAALLAGVHSRPIHQICQNKGSSFATQHPQAYHLFATTATGDGVKLWDMRTLRCERRFEGHPNRCHPCGIAWSPCGRYVACGAEDRHAYLYETGSSTFSRRLAGHSDTVMAVAFSPSAVQVPSPVP", "length": 732, "header": "tr|A0A5G2QTI6-1|A0A5G2QTI6_PIG Isoform 1 of WD repeat domain 27 OS=Sus scrofa OX=9823 GN=WDR27 PE=4 SV=2 CANONICAL=A0A5G2QTI6-1" }, "locus": { "chromosome": "1", "start_pos": 653701, "end_pos": 586699, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086163.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086163.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061470.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061470.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTI6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 732, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTI6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTI6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 287, "end_pos": 289 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 594, "end_pos": 596 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWD7-1", "uniprot_ac": "A0A5G2QWD7", "uniprot_id": "A0A5G2QWD7_PIG", "mass": { "chemical_mass": 120115.0, "monoisotopic_mass": 120115.0 }, "refseq": {}, "gene_names": [ { "name": "SRGAP3", "type": "recommended", "evidence": [ { "id": "A0A5G2QWD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ] } ], "protein_names": [ { "name": "SLIT-ROBO Rho GTPase activating protein 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QWD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRGAP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7", "locus": { "chromosome": "13", "start_pos": 65367608, "end_pos": 65721405, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033624", "url": "https://www.ensembl.org/id/ENSSSCG00000033624" } ] } } ], "crossref": [ { "id": "A0A5G2QWD7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWD7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033624", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033624", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04383", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04383", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07684", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07684", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B8H5", "url": "https://www.uniprot.org/uniprotkb/A0A287B8H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPSAIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSRSTESVKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGERAECGTTRPPCLPPKPQKMRRPRPLSVCSHKLFNGCMEAFIKDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILITLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHVNEVIKTIIIHHEAIFPSPRELEGPVYEKCMAGGEEYCDSPHSEPGTIDEVDHDNGTEPHTSDEEVEQIEAIAKFDYVGRSPRELSFKKGASLLLYHRASEDWWEGRHNGVMDSLSQKADSEASSGPLLDDKASSKNDLQSPTEHISDYGFGGVMGRVRLRSDGAAIPRRRSGGDTHSPPRGLGPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINYPDKKALSEGHSVRSTCGSTRHSSLGDHKSLEAEALAEDIEKTMSTALHELRELERQNTVKQAPDVVLDTLEPLKNPPGPISSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPSSSADKSGTM", "length": 1063, "header": "tr|A0A5G2QWD7-1|A0A5G2QWD7_PIG Isoform 1 of SLIT-ROBO Rho GTPase activating protein 3 OS=Sus scrofa OX=9823 GN=SRGAP3 PE=1 SV=1 CANONICAL=A0A5G2QWD7-1" }, "isoforms": [ { "isoform_ac": "A0A287B8H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8H5/entry", "sequence": { "sequence": "MSSQTKFKKDKEIIAEYEAQIKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSRSTESVKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGKLGNEVGKRDGLPLWDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILITLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHVNEVIKTIIIHHEAIFPSPRELEGPVYEKCMAGGEEYCDSPHSEPGTIDEVDHDNGTEPHTSDEEVEQIEAIAKFDYVGRSPRELSFKKGASLLLYHRASEDWWEGRHNVVQDMDDAFSDSLSQKADSEASSGPLLDDKASSKNDLQSPTEHISDYGFGGVMGRVRLRSDGAAIPRRRSGGDTHSPPRGLGPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINYPDKKALSEGHSVRSTCGSTRHSSLGDHKSLEAEALAEDIEKTMSTALHELRELERQNTVKQAPDVVLDTLEPLKNPPGPISSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPSSSADKSGTM", "length": 1060, "header": "tr|A0A287B8H5-1|A0A287B8H5_PIG Computationally mapped isoform of SLIT-ROBO Rho GTPase activating protein 3 OS=Sus scrofa OX=9823 GN=SRGAP3 PE=1 SV=3 CANONICAL=A0A5G2QWD7-1" }, "locus": { "chromosome": "13", "start_pos": 65638729, "end_pos": 65372439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059432.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059432.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052411.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052411.3" } ] } }, { "isoform_ac": "A0A5G2QTJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ7/entry", "sequence": { "sequence": "MQAGLMETRFPYLFIICLSSLPGGPRQSNPMESYPEAQIKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSRSTESVKSAASETYMSKINIAKRRANQQETEMFYFTNEDVPPICCLRL", "length": 471, "header": "tr|A0A5G2QTJ7-1|A0A5G2QWD7_PIG Computationally mapped isoform of SLIT-ROBO Rho GTPase activating protein 3 OS=Sus scrofa OX=9823 GN=SRGAP3 PE=1 SV=2 CANONICAL=A0A5G2QWD7-1" }, "locus": { "chromosome": "13", "start_pos": 65711722, "end_pos": 65439576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074709.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074709.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068251.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068251.2" } ] } }, { "isoform_ac": "A0A5G2QWD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7/entry", "sequence": { "sequence": "MGPSAIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDRPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLARTFRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCNQVFCPPLKFEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSRSTESVKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGERAECGTTRPPCLPPKPQKMRRPRPLSVCSHKLFNGCMEAFIKDSGQAIPLVVESCIRYINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPAERVHQIQQILITLPRVVIVVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHVNEVIKTIIIHHEAIFPSPRELEGPVYEKCMAGGEEYCDSPHSEPGTIDEVDHDNGTEPHTSDEEVEQIEAIAKFDYVGRSPRELSFKKGASLLLYHRASEDWWEGRHNGVMDSLSQKADSEASSGPLLDDKASSKNDLQSPTEHISDYGFGGVMGRVRLRSDGAAIPRRRSGGDTHSPPRGLGPSIDTPPRAAACPSSPHKIPLTRGRIESPEKRRMATFGSAGSINYPDKKALSEGHSVRSTCGSTRHSSLGDHKSLEAEALAEDIEKTMSTALHELRELERQNTVKQAPDVVLDTLEPLKNPPGPISSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPSSSADKSGTM", "length": 1063, "header": "tr|A0A5G2QWD7-1|A0A5G2QWD7_PIG Isoform 1 of SLIT-ROBO Rho GTPase activating protein 3 OS=Sus scrofa OX=9823 GN=SRGAP3 PE=1 SV=1 CANONICAL=A0A5G2QWD7-1" }, "locus": { "chromosome": "13", "start_pos": 65514936, "end_pos": 65372439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072818.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072818.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069264.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069264.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1046, "start_aa": "Thr", "end_pos": 1046, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1046", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" }, { "name": "negative regulation of cell migration", "id": "GO:0030336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030336", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" }, { "name": "regulation of synapse assembly", "id": "GO:0051963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051963", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 715, "end_pos": 717, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWD7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1063, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWD7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWD7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" }, { "id": "PS51741", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51741" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-BAR", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 296, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 488, "end_pos": 676, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWD7" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 726, "end_pos": 798, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1046 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 715, "end_pos": 717 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTK4-1", "uniprot_ac": "A0A5G2QTK4", "uniprot_id": "A0A5G2QTK4_PIG", "mass": { "chemical_mass": 9053.0, "monoisotopic_mass": 9053.0 }, "refseq": {}, "gene_names": [ { "name": "FDCSP", "type": "recommended", "evidence": [ { "id": "A0A5G2QTK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4" } ] } ], "protein_names": [ { "name": "Follicular dendritic cell secreted protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FDCSP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4", "locus": { "chromosome": "8", "start_pos": 67088907, "end_pos": 67084822, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047156", "url": "https://www.ensembl.org/id/ENSSSCG00000047156" } ] } } ], "crossref": [ { "id": "A0A5G2QTK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047156", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047156", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF15215", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15215", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KVLLLLTAMLAVTTGFPVSPEQEREKRSISGSDELPSQLFVPPNIYPFFPYPPPKPWSRYFYPPIPVALSGPTAIPPKEEL", "length": 81, "header": "tr|A0A5G2QTK4-1|A0A5G2QTK4_PIG Isoform 1 of Follicular dendritic cell secreted protein OS=Sus scrofa OX=9823 GN=FDCSP PE=4 SV=2 CANONICAL=A0A5G2QTK4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4/entry", "sequence": { "sequence": "KVLLLLTAMLAVTTGFPVSPEQEREKRSISGSDELPSQLFVPPNIYPFFPYPPPKPWSRYFYPPIPVALSGPTAIPPKEEL", "length": 81, "header": "tr|A0A5G2QTK4-1|A0A5G2QTK4_PIG Isoform 1 of Follicular dendritic cell secreted protein OS=Sus scrofa OX=9823 GN=FDCSP PE=4 SV=2 CANONICAL=A0A5G2QTK4-1" }, "locus": { "chromosome": "8", "start_pos": 67088907, "end_pos": 67087273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083402.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083402.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067482.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067482.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 81, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTK4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTL7-1", "uniprot_ac": "A0A5G2QTL7", "uniprot_id": "A0A5G2QTL7_PIG", "mass": { "chemical_mass": 10566.0, "monoisotopic_mass": 10566.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTL7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTL7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051429", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051429", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTL7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWASGSFTWGWSQPTSFDCGRWRHTHIPASMMSIPQESRISVPSVASLSEELLQLDQGAWRSGTWRGASVALPPHPPPSPLLPLPCTLHPQTLHSV", "length": 96, "header": "tr|A0A5G2QTL7-1|A0A5G2QTL7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTL7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7/entry", "sequence": { "sequence": "MWASGSFTWGWSQPTSFDCGRWRHTHIPASMMSIPQESRISVPSVASLSEELLQLDQGAWRSGTWRGASVALPPHPPPSPLLPLPCTLHPQTLHSV", "length": 96, "header": "tr|A0A5G2QTL7-1|A0A5G2QTL7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTL7-1" }, "locus": { "chromosome": "7", "start_pos": 74879499, "end_pos": 74878735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091503.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091503.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068183.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068183.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTL7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTL7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 96, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTL7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTL7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTM0-1", "uniprot_ac": "A0A5G2QTM0", "uniprot_id": "A0A5G2QTM0_PIG", "mass": { "chemical_mass": 20286.0, "monoisotopic_mass": 20286.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTM0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050468", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050468", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDLWDNIKWANLRIIGIPEGVEIDKGMENIFEEIITGSFPNLKDTEFKIQEAQRAPNKLNPKRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTSIRLSADFSTETLQARREWQEIFKVLKGKNIQPRILCPARISFKIEGEIKIFSNKQKLKEYSNTKPRLKEILKGLL", "length": 174, "header": "tr|A0A5G2QTM0-1|A0A5G2QTM0_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTM0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0/entry", "sequence": { "sequence": "MRDLWDNIKWANLRIIGIPEGVEIDKGMENIFEEIITGSFPNLKDTEFKIQEAQRAPNKLNPKRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGTSIRLSADFSTETLQARREWQEIFKVLKGKNIQPRILCPARISFKIEGEIKIFSNKQKLKEYSNTKPRLKEILKGLL", "length": 174, "header": "tr|A0A5G2QTM0-1|A0A5G2QTM0_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTM0-1" }, "locus": { "chromosome": "4", "start_pos": 35326581, "end_pos": 35326060, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077455.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077455.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068276.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068276.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 174, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTM0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 105, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QTM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTM0" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 171, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTS5-1", "uniprot_ac": "A0A5G2QTS5", "uniprot_id": "A0A5G2QTS5_PIG", "mass": { "chemical_mass": 10522.0, "monoisotopic_mass": 10522.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTS5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050753", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050753", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSNSFLVEPLGFSKYSVMSSANSNSFTSSFPIWILFISFTSLIAMARTSTTMLKSSAESGHPCLVPDLSRNSFSFSPLRMMFAGGLSYMAFMMLT", "length": 96, "header": "tr|A0A5G2QTS5-1|A0A5G2QTS5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTS5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5/entry", "sequence": { "sequence": "MSSNSFLVEPLGFSKYSVMSSANSNSFTSSFPIWILFISFTSLIAMARTSTTMLKSSAESGHPCLVPDLSRNSFSFSPLRMMFAGGLSYMAFMMLT", "length": 96, "header": "tr|A0A5G2QTS5-1|A0A5G2QTS5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTS5-1" }, "locus": { "chromosome": "AEMK02000465.1", "start_pos": 452221, "end_pos": 451934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091519.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091519.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068336.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068336.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTS5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 96, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTS5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTS5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTU2-1", "uniprot_ac": "A0A5G2QTU2", "uniprot_id": "A0A5G2QTU2_PIG", "mass": { "chemical_mass": 7283.0, "monoisotopic_mass": 7283.0 }, "refseq": { "ac": "NP_001422251", "name": "small lysine rich protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422251" }, "gene_names": [ { "name": "SMKR1", "type": "recommended", "evidence": [ { "id": "A0A5G2QTU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2" } ] }, { "name": "SMKR1", "type": "synonym", "evidence": [ { "id": "NP_001422251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422251" } ] } ], "protein_names": [ { "name": "Small lysine rich protein 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QTU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2/entry#names_and_taxonomy" } ] }, { "name": "small lysine rich protein 1", "type": "synonym", "evidence": [ { "id": "NP_001422251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422251" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMKR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2", "locus": { "chromosome": "18", "start_pos": 19186026, "end_pos": 19199624, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062966", "url": "https://www.ensembl.org/id/ENSSSCG00000062966" } ] } } ], "crossref": [ { "id": "A0A5G2QTU2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044254", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044254", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737195", "url": "https://www.ncbi.nlm.nih.gov/gene/100737195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37932:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37932:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "NP_001422251", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422251", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGKGKRKGQGRSHRKKPKKPEVDILSPAAMLNLQYIAHNAAHCLYLRGFRWPGATKSKKGKNKT", "length": 65, "header": "tr|A0A5G2QTU2-1|A0A5G2QTU2_PIG Isoform 1 of Small lysine rich protein 1 OS=Sus scrofa OX=9823 GN=SMKR1 PE=4 SV=1 CANONICAL=A0A5G2QTU2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2/entry", "sequence": { "sequence": "MPGKGKRKGQGRSHRKKPKKPEVDILSPAAMLNLQYIAHNAAHCLYLRGFRWPGATKSKKGKNKT", "length": 65, "header": "tr|A0A5G2QTU2-1|A0A5G2QTU2_PIG Isoform 1 of Small lysine rich protein 1 OS=Sus scrofa OX=9823 GN=SMKR1 PE=4 SV=1 CANONICAL=A0A5G2QTU2-1" }, "locus": { "chromosome": "18", "start_pos": 19199292, "end_pos": 19190444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100135.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100135.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075588.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075588.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTU2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 65, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTU2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTU6-1", "uniprot_ac": "A0A5G2QTU6", "uniprot_id": "A0A5G2QTU6_PIG", "mass": { "chemical_mass": 31430.0, "monoisotopic_mass": 31430.0 }, "refseq": { "ac": "XP_005660810", "name": "nucleoside diphosphate-linked moiety X motif 22 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660810" }, "gene_names": [ { "name": "NUDT22", "type": "recommended", "evidence": [ { "id": "A0A5G2QTU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ] }, { "name": "NUDT22", "type": "synonym", "evidence": [ { "id": "XP_005660810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660810" } ] } ], "protein_names": [ { "name": "Nudix hydrolase 22", "type": "synonym", "evidence": [ { "id": "A0A5G2QTU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6/entry#names_and_taxonomy" } ] }, { "name": "nucleoside diphosphate-linked moiety X motif 22 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005660810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660810" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUDT22", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6", "locus": { "chromosome": "2", "start_pos": 7881060, "end_pos": 7883791, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013039", "url": "https://www.ensembl.org/id/ENSSSCG00000013039" } ] } } ], "crossref": [ { "id": "A0A5G2QTU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013039", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013039", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521244", "url": "https://www.ncbi.nlm.nih.gov/gene/100521244", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521244", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521244", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTU6", "url": "https://www.orthodb.org/?gene=A0A5G2QTU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31835", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31835", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31835:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31835:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_005660810", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660810", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A1N3", "url": "https://www.uniprot.org/uniprotkb/A0A287A1N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1N3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPEVSLLLQCPPGGLPEEQVRAELSPAYDRRPLPGGDKAITAIWESRLRAQPWLFDAPKFRLHSATLVPTGSPGPQLLLHLGLTSYRDFLGTNWASSAAWLRQQGATDWGDKQAYLADPLGVGAALATADGFLVFLRRSGQVAEAPGLVDVPGGHPEPKALCPGDSPLHKDLPGELVAHELFSSVLQEICDEVNLPLLTLSRPLLLGIARNETSAGRASAEFYVQCSLSSEQVRKHYMSGGPEAHESTGIIFVETQKVRRLQETEMWSQLCPSAKGAIFLYSRVQGNST", "length": 290, "header": "tr|A0A5G2QTU6-1|A0A5G2QTU6_PIG Isoform 1 of Nudix hydrolase 22 OS=Sus scrofa OX=9823 GN=NUDT22 PE=4 SV=1 CANONICAL=A0A5G2QTU6-1" }, "isoforms": [ { "isoform_ac": "A0A287A1N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1N3/entry", "sequence": { "sequence": "MDPEVSLLLQCPPGGLPEEQVRAELSPAYDRRPLPGGDKAITAIWESRLRAQPWLFDAPKFRLHSATLVPTGSPGPQLLLHLGLTSYRDFLGTNWASSAAWLRQQGATDWGDKQAYLADPLGVGAALATADGFLVFLRRSGQVAEAPGLVDVPGGHPEPKVNLPLLTLSRPLLLGIARNETSAGRASAEFYVQCSLSSEQVRKHYMSGGPEAHESTGIIFVETQKVRRLQETEMWSQLCPSAKGAIFLYSRVQGNSTVAESPALSPPLG", "length": 269, "header": "tr|A0A287A1N3-1|A0A287A1N3_PIG Computationally mapped isoform of Nudix hydrolase 22 OS=Sus scrofa OX=9823 GN=NUDT22 PE=4 SV=2 CANONICAL=A0A5G2QTU6-1" }, "locus": { "chromosome": "2", "start_pos": 7883450, "end_pos": 7881082, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039719.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039719.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037831.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037831.2" } ] } }, { "isoform_ac": "A0A5G2QTU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6/entry", "sequence": { "sequence": "MDPEVSLLLQCPPGGLPEEQVRAELSPAYDRRPLPGGDKAITAIWESRLRAQPWLFDAPKFRLHSATLVPTGSPGPQLLLHLGLTSYRDFLGTNWASSAAWLRQQGATDWGDKQAYLADPLGVGAALATADGFLVFLRRSGQVAEAPGLVDVPGGHPEPKALCPGDSPLHKDLPGELVAHELFSSVLQEICDEVNLPLLTLSRPLLLGIARNETSAGRASAEFYVQCSLSSEQVRKHYMSGGPEAHESTGIIFVETQKVRRLQETEMWSQLCPSAKGAIFLYSRVQGNST", "length": 290, "header": "tr|A0A5G2QTU6-1|A0A5G2QTU6_PIG Isoform 1 of Nudix hydrolase 22 OS=Sus scrofa OX=9823 GN=NUDT22 PE=4 SV=1 CANONICAL=A0A5G2QTU6-1" }, "locus": { "chromosome": "2", "start_pos": 7883450, "end_pos": 7881123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091248.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091248.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068361.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068361.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521244", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521244", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "UDP-sugar diphosphatase activity", "id": "GO:0008768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008768", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "pmid": "" }, { "name": "GDP-mannose hydrolase activity", "id": "GO:0052751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052751", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 290, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTU6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTU6" }, { "id": "PS51462", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51462" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nudix hydrolase", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 285, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 288, "end_pos": 290 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTV0-1", "uniprot_ac": "A0A5G2QTV0", "uniprot_id": "A0A5G2QTV0_PIG", "mass": { "chemical_mass": 8274.0, "monoisotopic_mass": 8274.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "eIF3h C-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QTV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045075", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045075", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR045810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF19445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "CASRKIQMNFIQLSSNQGIPTPWGGSVQTSHTTSAPRMDSLVTAGPVDTYCQNIKQLTTQNSGTFFKVQPHQEYN", "length": 75, "header": "tr|A0A5G2QTV0-1|A0A5G2QTV0_PIG Isoform 1 of eIF3h C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTV0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0/entry", "sequence": { "sequence": "CASRKIQMNFIQLSSNQGIPTPWGGSVQTSHTTSAPRMDSLVTAGPVDTYCQNIKQLTTQNSGTFFKVQPHQEYN", "length": 75, "header": "tr|A0A5G2QTV0-1|A0A5G2QTV0_PIG Isoform 1 of eIF3h C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTV0-1" }, "locus": { "chromosome": "6", "start_pos": 113582386, "end_pos": 113581772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080366.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080366.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061555.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061555.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTV0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 75, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTV0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTV0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV0" }, { "id": "PF19445", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19445" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "eIF3h C-terminal", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 69, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTV2-1", "uniprot_ac": "A0A5G2QTV2", "uniprot_id": "A0A5G2QTV2_PIG", "mass": { "chemical_mass": 13338.0, "monoisotopic_mass": 13338.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTV2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTV2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047664", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047664", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QTV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVLCYVYVGFVLFAVKKLLNLIRFHLFIFVFIDITLGGGSEKIMSESVQPMFSPKSLILSSLRCRSLIHFEFVFVCGVRECSNFILLHVAVQFTRYHLLKRLSFLHCIFLPPLS", "length": 115, "header": "tr|A0A5G2QTV2-1|A0A5G2QTV2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTV2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2/entry", "sequence": { "sequence": "MFVLCYVYVGFVLFAVKKLLNLIRFHLFIFVFIDITLGGGSEKIMSESVQPMFSPKSLILSSLRCRSLIHFEFVFVCGVRECSNFILLHVAVQFTRYHLLKRLSFLHCIFLPPLS", "length": 115, "header": "tr|A0A5G2QTV2-1|A0A5G2QTV2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTV2-1" }, "locus": { "chromosome": "13", "start_pos": 55082971, "end_pos": 55082627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081520.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081520.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067589.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067589.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTV2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTV2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTV2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTV2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTW4-1", "uniprot_ac": "A0A5G2QTW4", "uniprot_id": "A0A5G2QTW4_PIG", "mass": { "chemical_mass": 26157.0, "monoisotopic_mass": 26157.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042807", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042807", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QTW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKTLAKVGIEGTFLNIIKTIYDKPTANIILNGKKLKDFSLKSGMREGCPLSPPLFNIVLEVLATAIRKTKEIKGIQIGREEIKLSLYADDMILYIESPKDSSQKLLELINKFSEVAGYKINIQKSATFLYMNNEILEKEYKNTAPFKITSQKIKLLEIHLTKEVKDLYTKNYKTLIKEIKEDVKKWKDSPCSWIGKIKVIKMAMLPKAIYTFNAIPIKLPMTFFTEL", "length": 228, "header": "tr|A0A5G2QTW4-1|A0A5G2QTW4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTW4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4/entry", "sequence": { "sequence": "MIKTLAKVGIEGTFLNIIKTIYDKPTANIILNGKKLKDFSLKSGMREGCPLSPPLFNIVLEVLATAIRKTKEIKGIQIGREEIKLSLYADDMILYIESPKDSSQKLLELINKFSEVAGYKINIQKSATFLYMNNEILEKEYKNTAPFKITSQKIKLLEIHLTKEVKDLYTKNYKTLIKEIKEDVKKWKDSPCSWIGKIKVIKMAMLPKAIYTFNAIPIKLPMTFFTEL", "length": 228, "header": "tr|A0A5G2QTW4-1|A0A5G2QTW4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QTW4-1" }, "locus": { "chromosome": "15", "start_pos": 14677451, "end_pos": 14676768, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078228.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078228.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065435.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065435.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 228, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTW4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTY7-1", "uniprot_ac": "A0A5G2QTY7", "uniprot_id": "A0A5G2QTY7_PIG", "mass": { "chemical_mass": 34554.0, "monoisotopic_mass": 34554.0 }, "refseq": { "ac": "XP_020954613", "name": "myeloid-associated differentiation marker-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954613" }, "gene_names": [ { "name": "LOC106504436", "type": "recommended", "evidence": [ { "id": "A0A5G2QTY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" } ] }, { "name": "LOC106504436", "type": "synonym", "evidence": [ { "id": "XP_020954613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954613" } ] } ], "protein_names": [ { "name": "MARVEL domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QTY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7/entry#names_and_taxonomy" } ] }, { "name": "myeloid-associated differentiation marker-like", "type": "synonym", "evidence": [ { "id": "XP_020954613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954613" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106504436", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTY7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTY7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050527", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050527", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106504436", "url": "https://www.ncbi.nlm.nih.gov/gene/106504436", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504436", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504436", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTY7", "url": "https://www.orthodb.org/?gene=A0A5G2QTY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954613", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954613", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCASSRLGSMPIVSFFFRLLQLLFICVPFSLVASEDVLKGDIINWCMSIWCFCFTVSLFIFLVEFCGLQSRLPFSWDGFLYAYAFNFAIVCLTTSIIFGTAHIQFLSPGPTRDRATTATAFSCIVAVLYAIEVAWVYVRPGDISCFVPTLPGMLRRLENIVACLILTINSSRSLYQHQPALEWCVAVYAICFILGAVNFLVNGSDCDNDKKLPIPYPRFLQGQTVLSLLLYASALVLWPLYQFSEKLGGQPQRSSDDSCSDHHTSFICIWDLRLTVTILTAINLLLYVADTAYLAREALVGTQAWQKGL", "length": 309, "header": "tr|A0A5G2QTY7-1|A0A5G2QTY7_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106504436 PE=3 SV=1 CANONICAL=A0A5G2QTY7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7/entry", "sequence": { "sequence": "MCASSRLGSMPIVSFFFRLLQLLFICVPFSLVASEDVLKGDIINWCMSIWCFCFTVSLFIFLVEFCGLQSRLPFSWDGFLYAYAFNFAIVCLTTSIIFGTAHIQFLSPGPTRDRATTATAFSCIVAVLYAIEVAWVYVRPGDISCFVPTLPGMLRRLENIVACLILTINSSRSLYQHQPALEWCVAVYAICFILGAVNFLVNGSDCDNDKKLPIPYPRFLQGQTVLSLLLYASALVLWPLYQFSEKLGGQPQRSSDDSCSDHHTSFICIWDLRLTVTILTAINLLLYVADTAYLAREALVGTQAWQKGL", "length": 309, "header": "tr|A0A5G2QTY7-1|A0A5G2QTY7_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106504436 PE=3 SV=1 CANONICAL=A0A5G2QTY7-1" }, "locus": { "chromosome": "7", "start_pos": 54181594, "end_pos": 54180668, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071533.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071533.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061595.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061595.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504436", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504436", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTY7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTY7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTY7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QTY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTY7" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 141, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 169, "end_pos": 171 }, { "start_pos": 202, "end_pos": 204 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QTZ8-1", "uniprot_ac": "A0A5G2QTZ8", "uniprot_id": "A0A5G2QTZ8_PIG", "mass": { "chemical_mass": 19973.0, "monoisotopic_mass": 19973.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QTZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QTZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044224", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044224", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVATIGWILGTRSMGLAEWRVWYVNNTSLLPSVLACVGVWRACPFHHLNGVNRASGCHHHNHHDTYIPLDILVAQNFLIVVSILGLFGKAAIVFALRNVYLRRGQKNTCNPFAVAGMLNIAAGVWILAAVVWNHQSVKDAPPSFPPSFNVPLKSAGLLSWPVWVPLHSWLVGWLSSLTNTH", "length": 181, "header": "tr|A0A5G2QTZ8-1|A0A5G2QTZ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTZ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8/entry", "sequence": { "sequence": "MVATIGWILGTRSMGLAEWRVWYVNNTSLLPSVLACVGVWRACPFHHLNGVNRASGCHHHNHHDTYIPLDILVAQNFLIVVSILGLFGKAAIVFALRNVYLRRGQKNTCNPFAVAGMLNIAAGVWILAAVVWNHQSVKDAPPSFPPSFNVPLKSAGLLSWPVWVPLHSWLVGWLSSLTNTH", "length": 181, "header": "tr|A0A5G2QTZ8-1|A0A5G2QTZ8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QTZ8-1" }, "locus": { "chromosome": "AEMK02000415.1", "start_pos": 20531, "end_pos": 19989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105037.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105037.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075333.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QTZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 181, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QTZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QTZ8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 26, "end_pos": 28 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QU00-1", "uniprot_ac": "A0A5G2QU00", "uniprot_id": "A0A5G2QU00_PIG", "mass": { "chemical_mass": 48443.0, "monoisotopic_mass": 48443.0 }, "refseq": { "ac": "XP_013835262", "name": "F-box/LRR-repeat protein 20 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835262" }, "gene_names": [ { "name": "FBXL20", "type": "recommended", "evidence": [ { "id": "A0A5G2QU00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ] }, { "name": "FBXL20", "type": "synonym", "evidence": [ { "id": "XP_013835262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835262" } ] } ], "protein_names": [ { "name": "F-box/LRR-repeat protein 20", "type": "recommended", "evidence": [ { "id": "A0A5G2QU00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00/entry#names_and_taxonomy" } ] }, { "name": "F-box and leucine-rich repeat protein 20", "type": "synonym", "evidence": [ { "id": "A0A5G2QU00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00/entry#names_and_taxonomy" } ] }, { "name": "F-box/LRR-repeat protein 20 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_013835262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835262" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXL20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00", "locus": { "chromosome": "12", "start_pos": 22970410, "end_pos": 22874160, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017506", "url": "https://www.ensembl.org/id/ENSSSCG00000017506" } ] } } ], "crossref": [ { "id": "A0A5G2QU00", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017506", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017506", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22115", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22115", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517553", "url": "https://www.ncbi.nlm.nih.gov/gene/100517553", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517553", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517553", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCNRIRY", "url": "https://omabrowser.org/oma/group/LCNRIRY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B793", "url": "https://www.orthodb.org/?gene=A0A287B793", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QU00", "url": "https://www.orthodb.org/?gene=A0A5G2QU00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RWL1", "url": "https://www.orthodb.org/?gene=F1RWL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13318:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13318:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13382", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13382", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13382:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13382:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013835262", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835262", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B793", "url": "https://www.uniprot.org/uniprotkb/A0A287B793", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B793-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B793-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1J9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1J9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1J9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHU9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWL1", "url": "https://www.uniprot.org/uniprotkb/F1RWL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWL1-1", "url": "https://www.uniprot.org/uniprotkb/F1RWL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRVQSLAREFLHEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 436, "header": "tr|A0A5G2QU00-1|A0A5G2QU00_PIG Isoform 1 of F-box/LRR-repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=1 CANONICAL=A0A5G2QU00-1" }, "isoforms": [ { "isoform_ac": "A0A287B793-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B793/entry", "sequence": { "sequence": "MAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 438, "header": "tr|A0A287B793-1|A0A287B793_PIG Computationally mapped isoform of F-box/LRR-repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=1 CANONICAL=A0A5G2QU00-1" }, "locus": { "chromosome": "12", "start_pos": 22965695, "end_pos": 22874235, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051396.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051396.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052339.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052339.1" } ] } }, { "isoform_ac": "A0A5G2QU00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00/entry", "sequence": { "sequence": "MVRVQSLAREFLHEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 436, "header": "tr|A0A5G2QU00-1|A0A5G2QU00_PIG Isoform 1 of F-box/LRR-repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=1 CANONICAL=A0A5G2QU00-1" }, "locus": { "chromosome": "12", "start_pos": 22965695, "end_pos": 22906476, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072293.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072293.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068323.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068323.1" } ] } }, { "isoform_ac": "A0A5G2R1J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1J9/entry", "sequence": { "sequence": "MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDAEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 404, "header": "tr|A0A5G2R1J9-1|A0A5G2R1J9_PIG Computationally mapped isoform of F-box and leucine rich repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=1 CANONICAL=A0A5G2QU00-1" }, "locus": { "chromosome": "12", "start_pos": 22965695, "end_pos": 22875050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071707.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071707.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064397.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064397.1" } ] } }, { "isoform_ac": "A0A8W4FHU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU9/entry", "sequence": { "sequence": "MEVPRLGVQSELQPLDYARATATRDPSCVCNLRHSSRQRRIVNPLSKGRDQTHNLMVPISRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARFYGITPKINLPHFFQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRVKMIVSPSGSSVLSTLSFFPSFPFLHVLISDLDSCGIYIYLDIQQREKKKDGEQI", "length": 464, "header": "tr|A0A8W4FHU9-1|A0A8W4FHU9_PIG Computationally mapped isoform of F-box and leucine rich repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=1 CANONICAL=A0A5G2QU00-1" }, "locus": { "chromosome": "12", "start_pos": 22964254, "end_pos": 22936020, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096722.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096722.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078456.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078456.1" } ] } }, { "isoform_ac": "F1RWL1-1", "url": "https://www.uniprot.org/uniprotkb/F1RWL1/entry", "sequence": { "sequence": "MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 436, "header": "tr|F1RWL1-1|F1RWL1_PIG Computationally mapped isoform of F-box/LRR-repeat protein 20 OS=Sus scrofa OX=9823 GN=FBXL20 PE=1 SV=4 CANONICAL=A0A5G2QU00-1" }, "locus": { "chromosome": "12", "start_pos": 22965695, "end_pos": 22875050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019059.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019059.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018553.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018553.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 417, "start_aa": "Thr", "end_pos": 417, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr417", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517553", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517553", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZM14-1", "protein_name": "F-box and leucine rich repeat protein 20", "gene_name": "FBXL20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRRAAEPVPPGPSHTHGRWGEDISLSTCTHSTTTTTTIIIIIVAARAGREPSIAVLTHNWRPWKRDSSALNQMFSNNDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCQGVGDNALRTFAQNCRNIEVLNLNGCTKITDATCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLNISWCDQVTKDGVQALVRGCGGLKALSLKGCTQLEDEALKYIGANCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCCNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHDLEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 494 }, "evidence": [ { "id": "A0A5G2QU00", "url": "https://omabrowser.org/oma/group/A0A5G2QU00/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A8DYA6-1", "protein_name": "F-box domain-containing protein", "gene_name": "Dmel\\CG9003", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFASSAETGVMEVGGTSGTGTGSSSSNNGGGSSSNSGGAGGSIELLCPPSGSSSISGSASFSSNSGASGSSSQTHSTAVSSATDRSNNNGNNHNPSLQLNGNGGSNTRQHSSGSNSRQHSSSSSNSNSSNISPPPSSSSSSRSNNNNNNHSSNIISGFCSTIWRSATFGSATPVINPLPAVSINPKIMESSSDSCSLSSSTTPDVGLADQQRNMAGSAQDQSEDQSQTFLGATELDDELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSLRGCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEECSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITDRTLEHLVSCHNLQRIELFDCQLITRTAIRKLKNHLPNIKVHAYFAPGTPPAVTSGHRPRYCRCCEIL", "length": 651 }, "evidence": [ { "id": "A0A5G2QU00", "url": "https://omabrowser.org/oma/group/A0A5G2QU00/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "B8K0E7-1", "protein_name": "F-box/LRR-repeat protein 20", "gene_name": "fbxl20", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGKEVNGVSRSRFEMFSNNDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRSWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDSALRTFAQNCRNIELLSLNGCTKITDSTCNSLSKFCPKLKHLDLASCTSITNLSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRCCPGLKGLFLKGCTQLEDEALKHIGGHCPELVTLNLQTCSQITDEGLITICRGCHRLQSLCVSGCANITDAILNALGQNCPRLRILEVARCSQLTDVGFTSLARNCHELEKMDLEECVQITDATLIQLSIHCPRLQVLSLSHCELITDDGIRQLGSGPCAHDRLEVIELDNCPLITDASLEHLKSCHSLDRIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCVLL", "length": 436 }, "evidence": [ { "id": "A0A5G2QU00", "url": "https://omabrowser.org/oma/group/A0A5G2QU00/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q58DG6-1", "protein_name": "F-box/LRR-repeat protein 20", "gene_name": "FBXL20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 436 }, "evidence": [ { "id": "A0A5G2QU00", "url": "https://omabrowser.org/oma/group/A0A5G2QU00/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96IG2-1", "protein_name": "F-box/LRR-repeat protein 20", "gene_name": "FBXL20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL", "length": 436 }, "evidence": [ { "id": "A0A5G2QU00", "url": "https://omabrowser.org/oma/group/A0A5G2QU00/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle exocytosis", "id": "GO:2000300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000300", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" }, { "name": "regulation of protein catabolic process at presynapse, modulating synaptic transmission", "id": "GO:0099575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099575", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QU00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 436, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QU00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU00" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QU00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU00" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 68, "start_aa": "Ala", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 417 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 175, "end_pos": 177 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QU61-1", "uniprot_ac": "A0A5G2QU61", "uniprot_id": "A0A5G2QU61_PIG", "mass": { "chemical_mass": 13724.0, "monoisotopic_mass": 13724.0 }, "refseq": { "ac": "XP_013849575", "name": "transmembrane protein 262", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849575" }, "gene_names": [ { "name": "TMEM262", "type": "recommended", "evidence": [ { "id": "A0A5G2QU61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61" } ] }, { "name": "TMEM262", "type": "synonym", "evidence": [ { "id": "XP_013849575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849575" } ] } ], "protein_names": [ { "name": "Transmembrane protein 262", "type": "synonym", "evidence": [ { "id": "A0A5G2QU61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 262", "type": "synonym", "evidence": [ { "id": "XP_013849575", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849575" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM262", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61", "locus": { "chromosome": "2", "start_pos": 7099324, "end_pos": 7094806, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047012", "url": "https://www.ensembl.org/id/ENSSSCG00000047012" } ] } } ], "crossref": [ { "id": "A0A5G2QU61", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU61", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736864", "url": "https://www.ncbi.nlm.nih.gov/gene/100736864", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736864", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736864", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QU61", "url": "https://www.orthodb.org/?gene=A0A5G2QU61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37998", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37998", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37998:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37998:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15837", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15837", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013849575", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849575", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QU61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRWRDRLAVLFFPQGRILTVAAMMLFFIHLIIFASDVHNFCVTYHYDRMSFHYTVVLMFSQVIGICWAAMGSLYAEMTGDKFLRCFSLTILMLNGAMFFNRLSLEFLAIQYREENH", "length": 116, "header": "tr|A0A5G2QU61-1|A0A5G2QU61_PIG Isoform 1 of Transmembrane protein 262 OS=Sus scrofa OX=9823 GN=TMEM262 PE=4 SV=1 CANONICAL=A0A5G2QU61-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61/entry", "sequence": { "sequence": "MRWRDRLAVLFFPQGRILTVAAMMLFFIHLIIFASDVHNFCVTYHYDRMSFHYTVVLMFSQVIGICWAAMGSLYAEMTGDKFLRCFSLTILMLNGAMFFNRLSLEFLAIQYREENH", "length": 116, "header": "tr|A0A5G2QU61-1|A0A5G2QU61_PIG Isoform 1 of Transmembrane protein 262 OS=Sus scrofa OX=9823 GN=TMEM262 PE=4 SV=1 CANONICAL=A0A5G2QU61-1" }, "locus": { "chromosome": "2", "start_pos": 7099179, "end_pos": 7098618, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081854.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081854.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067694.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067694.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736864", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736864", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QU61-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 116, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QU61-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU61" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QU90-1", "uniprot_ac": "A0A5G2QU90", "uniprot_id": "A0A5G2QU90_PIG", "mass": { "chemical_mass": 11019.0, "monoisotopic_mass": 11019.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QU90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90", "locus": {} } ], "crossref": [ { "id": "A0A5G2QU90", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU90", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050050", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050050", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QU90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILYPATLLNLLISSRSFGVESLGFSRYSMMSSAYSDSLISSLPIWMPFISFVCLIDVAKTSKTMLKSSAESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QU90-1|A0A5G2QU90_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QU90-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90/entry", "sequence": { "sequence": "MLILYPATLLNLLISSRSFGVESLGFSRYSMMSSAYSDSLISSLPIWMPFISFVCLIDVAKTSKTMLKSSAESGHPCLVPDLSEKAFSFSPLRIIFAVGLS", "length": 101, "header": "tr|A0A5G2QU90-1|A0A5G2QU90_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QU90-1" }, "locus": { "chromosome": "15", "start_pos": 2463814, "end_pos": 2463512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084968.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084968.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065561.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065561.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QU90-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QU90-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU90" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QU96-1", "uniprot_ac": "A0A5G2QU96", "uniprot_id": "A0A5G2QU96_PIG", "mass": { "chemical_mass": 61438.0, "monoisotopic_mass": 61438.0 }, "refseq": {}, "gene_names": [ { "name": "IL17REL", "type": "recommended", "evidence": [ { "id": "A0A5G2QU96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" } ] } ], "protein_names": [ { "name": "Interleukin 17 receptor E like", "type": "synonym", "evidence": [ { "id": "A0A5G2QU96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL17REL", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96", "locus": {} } ], "crossref": [ { "id": "A0A5G2QU96", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000983", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000983", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520842", "url": "https://www.ncbi.nlm.nih.gov/gene/100520842", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520842", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520842", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSQGLQC", "url": "https://omabrowser.org/oma/group/CSQGLQC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXQ0", "url": "https://www.orthodb.org/?gene=F1RXQ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QU96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXQ0", "url": "https://www.uniprot.org/uniprotkb/F1RXQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTGQAVALLSLTWSAYQSLAVPRVSECGLSCSQGFTCKSRVNRNIFNSFCQQPPTSMSRSVLEALALSTAMKCSPPDGCALLLRVQASLMPHESLRGLEACSVSLDTQETQCQSVRIRRASRRLQRGQQLQVHFDCFEVGVAQSLYVTLRTVPHFCGIQLDQQYQVEAGKLSYWVARSHKVVLVQVPEAPGGPDYYVRLCLKRFTCEEAGAPVRVTADGVSRRVSLPYSQELPCLCLEAWPATPDAVRIQACPFKDDTETLWDAVYYQPGSQALSWEPPCPVSGHVSLCWRPGPGAPCLELEHSGRPAHGRVRYPLVDAQPQLCLKFSTSLGVRLRCPFQQLGFPALPASRCACVTKEGRGPRPAAECSRPLPSLQPQVTPRRSLWRPSWTFPRTRPVRPAPASRSGGLMPTSRPPSSCVTFRALPPRGQQPEARCLAKKKQAPGPDGGAVERGQLTPGPQALTQRPGLAWPLTVGPVALPELQRLWLHRAPWARHGFRSDEGPSAPPKPLSGRQLNGCPGCPLPQRAQPLTCPISARSRLPLDNQGQGLECGVWAHPFCS", "length": 562, "header": "tr|A0A5G2QU96-1|A0A5G2QU96_PIG Isoform 1 of Interleukin 17 receptor E like OS=Sus scrofa OX=9823 GN=IL17REL PE=4 SV=2 CANONICAL=A0A5G2QU96-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96/entry", "sequence": { "sequence": "MLTGQAVALLSLTWSAYQSLAVPRVSECGLSCSQGFTCKSRVNRNIFNSFCQQPPTSMSRSVLEALALSTAMKCSPPDGCALLLRVQASLMPHESLRGLEACSVSLDTQETQCQSVRIRRASRRLQRGQQLQVHFDCFEVGVAQSLYVTLRTVPHFCGIQLDQQYQVEAGKLSYWVARSHKVVLVQVPEAPGGPDYYVRLCLKRFTCEEAGAPVRVTADGVSRRVSLPYSQELPCLCLEAWPATPDAVRIQACPFKDDTETLWDAVYYQPGSQALSWEPPCPVSGHVSLCWRPGPGAPCLELEHSGRPAHGRVRYPLVDAQPQLCLKFSTSLGVRLRCPFQQLGFPALPASRCACVTKEGRGPRPAAECSRPLPSLQPQVTPRRSLWRPSWTFPRTRPVRPAPASRSGGLMPTSRPPSSCVTFRALPPRGQQPEARCLAKKKQAPGPDGGAVERGQLTPGPQALTQRPGLAWPLTVGPVALPELQRLWLHRAPWARHGFRSDEGPSAPPKPLSGRQLNGCPGCPLPQRAQPLTCPISARSRLPLDNQGQGLECGVWAHPFCS", "length": 562, "header": "tr|A0A5G2QU96-1|A0A5G2QU96_PIG Isoform 1 of Interleukin 17 receptor E like OS=Sus scrofa OX=9823 GN=IL17REL PE=4 SV=2 CANONICAL=A0A5G2QU96-1" }, "locus": { "chromosome": "5", "start_pos": 659723, "end_pos": 646966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069878.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069878.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061710.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061710.2" } ] } }, { "isoform_ac": "F1RXQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXQ0/entry", "sequence": { "sequence": "MLTGQAVALLSLTWSAYQSLAVPRVSECGLSCSQGFTCKSRVNRNIFNSFCQQPPTSMSRSVLEALALSTAMKCSPPDGCALLLRVQASLMPHESLRGLEACSVSLDTQETQCQSVRIRRASRRLQRGQQLQVHFDCFEVGVAQSLYVTLRTVPHFCGIQLDQQYQVEDCSDEDVGGTCRTALVPEAPGGPDYYVRLCLKRFTCEEAGAPVRVTADGVSRRVSLPYSQELPCLCLEAWPATPDAVRIQACPFKDDTETLWDAVYYQPGSQALSWEPPCPVSGHVSLCWRPGPGAPCLELEHSGRPAHGRVRYPLVDAQPQLCLKFSTSLGVRLRCPFQQLGFPAWKMTVQPAPAPGRLRVAFFSPSPARFQVCLCHQGGTWPSACRRVLQATAIPAASGDPTEEPVAAFVDIPEDEACAPGTCIQVRRTDAHFSAPQQLCDLPCAATQGTAA", "length": 452, "header": "tr|F1RXQ0-1|F1RXQ0_PIG Computationally mapped isoform of Interleukin 17 receptor E like OS=Sus scrofa OX=9823 GN=IL17REL PE=4 SV=2 CANONICAL=A0A5G2QU96-1" }, "locus": { "chromosome": "5", "start_pos": 659335, "end_pos": 646966, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001073.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001073.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001051.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001051.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 244, "start_aa": "Thr", "end_pos": 244, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr244", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520842", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520842", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XVL9-1", "protein_name": "Interleukin 17 receptor E like", "gene_name": "IL17REL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MISVHVLILLIILFWNYDCHIIPRIEECGLSCSQGIHCKSKPSSGIFNSFCHSAPASLSSMVLKSMKISTVIKCPQGSPCSLHLNIKGTLSLDENIRGLEICSFSLDTQQSQCTNVRFARKKNKILNGKKVQVQFNCFEVNVAQHIYVTVKTVPNYCEVKMSQEYYVEDCRNSDVGKHIPACLAGKLDYNVDRTRKIISVNVSNFLRDQDYYIRLCHKWFTCEDVGQFAVIKGKDSLKSVSLKYSQLLPCLCIEGWLAIPDARRLQLCPFENDTKALWDNIVYNPVTQTLAWEPACPVLVIVNLCRLMKSNDHCEDIQDSSKRFPEKQVKYSRVDTHPRLCMKFTTKQGSWVKCPFAHGEFPAWKMRTAAVADRIQVFFTSQTKAHFSVLVCNRTQLASCESVGMRHSVSVGDSVSIMMSREMCGSTICIQGWRTDVDYSVPLQTCDIHCGFRGQTYGNENPAKALTHRMKSVHSLH", "length": 477 }, "evidence": [ { "id": "A0A5G2QU96", "url": "https://omabrowser.org/oma/group/A0A5G2QU96/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3N0X3-1", "protein_name": "Interleukin 17 receptor E like", "gene_name": "IL17REL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLAGHAVALLCLTWGAYQSLAIPRVTECGLSCPQGFACKSLVSRGNIFNSFCQQPPASMPRSVLGALGLSTAMKCSPPDGCSLLLRVNASLTFHESLQGLEVCSTSLDTQETQCQTVQVPRASHRQAGQQLQVRFDCFKVGVAQSLYVTLRTVPHFCGVQLGQQYHTEDCREEDVGKNVPDCFAQKLSYWVDRSRKVILVQVPESGGPDYYVRLCLKRFICEDAGAPVRVIGNRVSRRVSLPYSQELSCLCLEVWSATPDAVRIQTCPFKNDTESLWDAIRYHPGSQALSWEPACPMRGRVSLCWQPGPGAHCLELKHSGRPARGRVQYPLVDTQPQLCLKFSTSLGFQVRCPFKQPRFPAWKMAVQPAPAPGRLRVAFFSSGPARFQVRLCHQGKTWPPACRRLLQATPVPAASVSQGDSAEDPAVAFVDIPGDEACAPSTCIQGRRTDVQFSVPQQLCNLQCGWRGHTAQEVEDRGATASAPGQASEP", "length": 490 }, "evidence": [ { "id": "A0A5G2QU96", "url": "https://omabrowser.org/oma/group/A0A5G2QU96/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6ZVW7-1", "protein_name": "Interleukin-17 receptor E-like protein", "gene_name": "IL17REL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLAGQALAFLGLTWGTFQSLAIPRITECGLSCSQGFACRSHRNRNIFNSFCRPRPVSMSRSVLEALTSSTAMQCVPSDGCAMLLRVRASITLHERLRGLEACAMSLDTQETQCQSVWVARASHRQQGGQQLQVHFGCFAVSVAQHLYVTLRTIPHFCGVQLDQRHLVEDCGEEDVGRSVPDCLAGKLSYWVDRRRKAILVQVPRASGSPDYYLRLCLKRFTCEDAGAPVRVTANSVSQAVFLPYSQELPCLCLEGWSATPDAVRIQICPFENDTEALEVLWDTVYYHPESQTLSWEPACPVSGHVSLCWRPGPGAGCRKLQQSSQLVHRRVQYPLVDTQPQLCLKFSTSWGSWVRCPFEQRRFPTWKMTIQPSPTKGHLRVTFFSSSPAHFQVHLCHRRKSQLPACQRTLQASPLPSASGDLAAAPAFAFLDLPREEACAPGICIQGWRTDVHFSVPQQLCNLRSSGCPSLRGRRRPRTRPRPPTAGWAWRALNRRLGGGNGETIRP", "length": 507 }, "evidence": [ { "id": "A0A5G2QU96", "url": "https://omabrowser.org/oma/group/A0A5G2QU96/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "interleukin-17 receptor activity", "id": "GO:0030368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030368", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QU96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 562, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QU96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QU96" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QU96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU96" }, { "id": "PF15037", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Interleukin-17 receptor C/E N-terminal", "eco_id": "ECO_0000259", "start_pos": 222, "end_pos": 346, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 244 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUA9-1", "uniprot_ac": "A0A5G2QUA9", "uniprot_id": "A0A5G2QUA9_PIG", "mass": { "chemical_mass": 13200.0, "monoisotopic_mass": 13200.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUA9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051357", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051357", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGMARKNPAPFNSFSPRSLAQMPEFPALVLWGFYFARSSHYFLSPVPLPGGHKSNDASASVSRQLKALENKEQKIGENSKVRPYFLDHHLCLWRTGSAGAQVGRQTGDSGLQRSDSSCC", "length": 120, "header": "tr|A0A5G2QUA9-1|A0A5G2QUA9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUA9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9/entry", "sequence": { "sequence": "MVGMARKNPAPFNSFSPRSLAQMPEFPALVLWGFYFARSSHYFLSPVPLPGGHKSNDASASVSRQLKALENKEQKIGENSKVRPYFLDHHLCLWRTGSAGAQVGRQTGDSGLQRSDSSCC", "length": 120, "header": "tr|A0A5G2QUA9-1|A0A5G2QUA9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUA9-1" }, "locus": { "chromosome": "14", "start_pos": 87930147, "end_pos": 87929788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083969.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083969.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067739.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067739.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUA9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUA9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUA9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUB7-1", "uniprot_ac": "A0A5G2QUB7", "uniprot_id": "A0A5G2QUB7_PIG", "mass": { "chemical_mass": 17824.0, "monoisotopic_mass": 17824.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUB7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QUB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGDKNIQWRKESLWENRIATSQRMKLEHSLIPYTKINSKWIKDLNIRPDTMRLLEKNIGTTLSNINHNNIFLHPSPRVMEIKTKINKWNPIKLKSFCMTKEPISRMKRQPTEWEKIFANNKTNKRLISKIHKTAGRLMIKKQTTQSKKG", "length": 150, "header": "tr|A0A5G2QUB7-1|A0A5G2QUB7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUB7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7/entry", "sequence": { "sequence": "MTGDKNIQWRKESLWENRIATSQRMKLEHSLIPYTKINSKWIKDLNIRPDTMRLLEKNIGTTLSNINHNNIFLHPSPRVMEIKTKINKWNPIKLKSFCMTKEPISRMKRQPTEWEKIFANNKTNKRLISKIHKTAGRLMIKKQTTQSKKG", "length": 150, "header": "tr|A0A5G2QUB7-1|A0A5G2QUB7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUB7-1" }, "locus": { "chromosome": "1", "start_pos": 242421775, "end_pos": 242421326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075983.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075983.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068531.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068531.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUB7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUB7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 150, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUB7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUB7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUJ9-1", "uniprot_ac": "A0A5G2QUJ9", "uniprot_id": "A0A5G2QUJ9_PIG", "mass": { "chemical_mass": 20760.0, "monoisotopic_mass": 20760.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QUJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFFTELEQTTQKFIRNHKRPRIAKAILRNKNQAGGITLPDFGQYYKATVIETVWYWYQHRHTDQWDRIENPDIDPDTCGQLICYKGGKNIKSEKDRLFSKWCWQHWTAACESMKLEHIITPCTKINSKWLKDLNIRQDTLKFLEENIAKHSLISTVQMFSQVSLPRQQKQKQK", "length": 174, "header": "tr|A0A5G2QUJ9-1|A0A5G2QUJ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUJ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9/entry", "sequence": { "sequence": "MTFFTELEQTTQKFIRNHKRPRIAKAILRNKNQAGGITLPDFGQYYKATVIETVWYWYQHRHTDQWDRIENPDIDPDTCGQLICYKGGKNIKSEKDRLFSKWCWQHWTAACESMKLEHIITPCTKINSKWLKDLNIRQDTLKFLEENIAKHSLISTVQMFSQVSLPRQQKQKQK", "length": 174, "header": "tr|A0A5G2QUJ9-1|A0A5G2QUJ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUJ9-1" }, "locus": { "chromosome": "16", "start_pos": 41397113, "end_pos": 41396592, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079118.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079118.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061841.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061841.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUJ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 174, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUJ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUJ9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUL8-1", "uniprot_ac": "A0A5G2QUL8", "uniprot_id": "A0A5G2QUL8_PIG", "mass": { "chemical_mass": 29887.0, "monoisotopic_mass": 29887.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110258425", "type": "recommended", "evidence": [ { "id": "A0A5G2QUL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QUL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110258425", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUL8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050784", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050784", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTITTSPLLKSPMYFFLAHLSFIDACYSCVNTPKVILDLLHEKKTSTFNECMSQIFGEHLFAGADVIVLTVMAYDHYVAICKTLHYTTIMNWQVCCLLVEVSRMGGFLHATVQIVFIYRLPFCGPNVIDHFMCDLNPLLDLACTNTHTLGLFVAVNSGFICMLIFLLLIGSYTVILHSLRTHRLEAKQKALSTCVSHITVIILFFVASIFVYMRPAATLPIDKAVAVFYTMITPMLNPLIYTLRNSEMKNAIRKFCSRKVISSD", "length": 265, "header": "tr|A0A5G2QUL8-1|A0A5G2QUL8_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110258425 PE=3 SV=1 CANONICAL=A0A5G2QUL8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8/entry", "sequence": { "sequence": "MVTITTSPLLKSPMYFFLAHLSFIDACYSCVNTPKVILDLLHEKKTSTFNECMSQIFGEHLFAGADVIVLTVMAYDHYVAICKTLHYTTIMNWQVCCLLVEVSRMGGFLHATVQIVFIYRLPFCGPNVIDHFMCDLNPLLDLACTNTHTLGLFVAVNSGFICMLIFLLLIGSYTVILHSLRTHRLEAKQKALSTCVSHITVIILFFVASIFVYMRPAATLPIDKAVAVFYTMITPMLNPLIYTLRNSEMKNAIRKFCSRKVISSD", "length": 265, "header": "tr|A0A5G2QUL8-1|A0A5G2QUL8_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110258425 PE=3 SV=1 CANONICAL=A0A5G2QUL8-1" }, "locus": { "chromosome": "AEMK02000677.1", "start_pos": 880951, "end_pos": 880157, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075915.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075915.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065662.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065662.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUL8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 265, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUL8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUL8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUL8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 242, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUM5-1", "uniprot_ac": "A0A5G2QUM5", "uniprot_id": "A0A5G2QUM5_PIG", "mass": { "chemical_mass": 146003.0, "monoisotopic_mass": 146003.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QUM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QUM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050715", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050715", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLNPEPRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1248, "header": "tr|A0A5G2QUM5-1|A0A5G2QUM5_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUM5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5/entry", "sequence": { "sequence": "MCLNPEPRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDITSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1248, "header": "tr|A0A5G2QUM5-1|A0A5G2QUM5_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUM5-1" }, "locus": { "chromosome": "2", "start_pos": 130010595, "end_pos": 130006728, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091466.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091466.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067854.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067854.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1041, "end_pos": 1043, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1248, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUM5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM5" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 473, "end_pos": 748, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1041, "end_pos": 1043 }, { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 335, "end_pos": 337 }, { "start_pos": 443, "end_pos": 445 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUP5-1", "uniprot_ac": "A0A5G2QUP5", "uniprot_id": "A0A5G2QUP5_PIG", "mass": { "chemical_mass": 19898.0, "monoisotopic_mass": 19898.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUP5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QUP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKATEIKAKINQWDVIKLTSFYTEKETKKKTRQPMEWEKIVSNDATDKSFIYRIYKQLIQLNSRKANNPMEKWAKDLNRHFSKDDIQMANKHLKQWSTSLIIRKMQIKTTMRYHLTPVRMAMINKSTNSKCWRECGEKGTLLHCWWECKLVQPLWRTV", "length": 166, "header": "tr|A0A5G2QUP5-1|A0A5G2QUP5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUP5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5/entry", "sequence": { "sequence": "MNIFSGQSPKATEIKAKINQWDVIKLTSFYTEKETKKKTRQPMEWEKIVSNDATDKSFIYRIYKQLIQLNSRKANNPMEKWAKDLNRHFSKDDIQMANKHLKQWSTSLIIRKMQIKTTMRYHLTPVRMAMINKSTNSKCWRECGEKGTLLHCWWECKLVQPLWRTV", "length": 166, "header": "tr|A0A5G2QUP5-1|A0A5G2QUP5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUP5-1" }, "locus": { "chromosome": "8", "start_pos": 123887195, "end_pos": 123886698, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069279.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069279.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061891.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061891.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUP5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUP8-1", "uniprot_ac": "A0A5G2QUP8", "uniprot_id": "A0A5G2QUP8_PIG", "mass": { "chemical_mass": 26429.0, "monoisotopic_mass": 26429.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUP8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050812", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050812", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QUP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRKSIQQALLGNLDSSMQSNETRTTLTPCTKINSKWLKDLNIRQDTIQLLEENIGKTLSDINIMNILSGQSPKAIEIRAKINPWDLIKLRSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIQTTMKYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECQLVQPL", "length": 228, "header": "tr|A0A5G2QUP8-1|A0A5G2QUP8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUP8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8/entry", "sequence": { "sequence": "MGKRKSIQQALLGNLDSSMQSNETRTTLTPCTKINSKWLKDLNIRQDTIQLLEENIGKTLSDINIMNILSGQSPKAIEIRAKINPWDLIKLRSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMASKHMKKCSTSLIIREMQIQTTMKYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECQLVQPL", "length": 228, "header": "tr|A0A5G2QUP8-1|A0A5G2QUP8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUP8-1" }, "locus": { "chromosome": "X", "start_pos": 34278447, "end_pos": 34277764, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069550.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069550.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068558.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068558.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUP8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 228, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUP8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUP8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUR2-1", "uniprot_ac": "A0A5G2QUR2", "uniprot_id": "A0A5G2QUR2_PIG", "mass": { "chemical_mass": 11412.0, "monoisotopic_mass": 11412.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ribosomal protein L10e/L16 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QUR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051671", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051671", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11726", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11726", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSPVRVPDGYAGAFEKPRGPVAREHPGPVIMAICTQQQNKEHVTEAQRRARFKFPGCQKICTSKKWRLCNVDEFENTVAEKQRIPGGCGVKYIPDCGPLDK", "length": 102, "header": "tr|A0A5G2QUR2-1|A0A5G2QUR2_PIG Isoform 1 of Ribosomal protein L10e/L16 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUR2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2/entry", "sequence": { "sequence": "MLSPVRVPDGYAGAFEKPRGPVAREHPGPVIMAICTQQQNKEHVTEAQRRARFKFPGCQKICTSKKWRLCNVDEFENTVAEKQRIPGGCGVKYIPDCGPLDK", "length": 102, "header": "tr|A0A5G2QUR2-1|A0A5G2QUR2_PIG Isoform 1 of Ribosomal protein L10e/L16 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUR2-1" }, "locus": { "chromosome": "13", "start_pos": 202946487, "end_pos": 202946182, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089918.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089918.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065702.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065702.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUR2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 102, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUR2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUR2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUR8-1", "uniprot_ac": "A0A5G2QUR8", "uniprot_id": "A0A5G2QUR8_PIG", "mass": { "chemical_mass": 107379.0, "monoisotopic_mass": 107379.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF316", "type": "recommended", "evidence": [ { "id": "A0A5G2QUR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ] } ], "protein_names": [ { "name": "Zinc finger protein 316", "type": "recommended", "evidence": [ { "id": "A0A5G2QUR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF316", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8", "locus": { "chromosome": "3", "start_pos": 4555440, "end_pos": 4568791, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023378", "url": "https://www.ensembl.org/id/ENSSSCG00000023378" } ] } } ], "crossref": [ { "id": "A0A5G2QUR8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023378", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023378", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALPTTPDSPAAQLERTEAGSECDPEQDGEEEEAKGQEMEAAMEEEAEDLAEELEAEGARAGPAEQAEQDDDVAEVVAEERSPVLGTQERLGLGRGGGDTESPALREKALQASQAPASPSHEDVDEDEEGEEEEEDGSLVSGSQGLVTFEDVAVYFSLEEWERLDSEQRELYKEVMQENYGILVSLGYPIPKPDLISRLEQGEEPWVPDSPRPEDGDIVTGVYTGAWFWTDDIEDHEEDDDEDFLAEVAEEENEPPGLWSAAYGVGDVPGTWGPDDSDSAQTPDGWSLDPGGLGVLAEGPEAKPFLPGREPGASLLAPWAFPSAVAAPAGRPETTCEVCGKVFPHRSRLAKHQRYHAAVKPFGCDECGKGFVYRSHLAIHQRTHTGEKPFPCPDCGKRFVYKSHLVTHRRIHTGERPYRCAFCGAGFGRRSYLVTHQRTHTGERPYPCPHCGRSFSQSSALARHQAVHTADRPHCCPDCGQAFRLRADFQRHRRGGGCSEPSADGPRREPCETVPTAGPEEAETGPEGPEEPEVGEADGEAEAEAEEREVAVELPAPGSKEDPEPDRRFLELGNGLGEGEGPSSHPLGFHFPVHPKSWLHPDGFPILGLPDFGERLQADRRPLPGPLGGRLSLVEGAGLACDPFGGSAGAGGGGGGLRAFAPAVGGLLAEPAPAALAEEESPWICSDCGKTFGRRAALAKHQRYHAGERPHRCADCGKSFVYGSHLARHRRTHTGERPFPCPECGARFARGSHLAAHVRGHTGEKPFVCGVCGAGFSRRAHLTAHGRAHTGERPYACGECGRRFGQSAALTRHQWAHAEEKPHRCPDCGKGFGHSSDFKRHRRTHTGEKPFRCTDCGRGFAQRSNLAKHRRGHTGERPFPCPECGKRFSQRSVLVTHQRTHTGERPYACANCGRRFSQSSHLLTHMKTHRGAAGAAGPAPAAPASKAEAPAKGPPGAGAGTGPGEHGGILLEFAGGTSFGSEPTTAFAGPSGAYEESVM", "length": 1000, "header": "tr|A0A5G2QUR8-1|A0A5G2QUR8_PIG Isoform 1 of Zinc finger protein 316 OS=Sus scrofa OX=9823 GN=ZNF316 PE=3 SV=1 CANONICAL=A0A5G2QUR8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8/entry", "sequence": { "sequence": "MAALPTTPDSPAAQLERTEAGSECDPEQDGEEEEAKGQEMEAAMEEEAEDLAEELEAEGARAGPAEQAEQDDDVAEVVAEERSPVLGTQERLGLGRGGGDTESPALREKALQASQAPASPSHEDVDEDEEGEEEEEDGSLVSGSQGLVTFEDVAVYFSLEEWERLDSEQRELYKEVMQENYGILVSLGYPIPKPDLISRLEQGEEPWVPDSPRPEDGDIVTGVYTGAWFWTDDIEDHEEDDDEDFLAEVAEEENEPPGLWSAAYGVGDVPGTWGPDDSDSAQTPDGWSLDPGGLGVLAEGPEAKPFLPGREPGASLLAPWAFPSAVAAPAGRPETTCEVCGKVFPHRSRLAKHQRYHAAVKPFGCDECGKGFVYRSHLAIHQRTHTGEKPFPCPDCGKRFVYKSHLVTHRRIHTGERPYRCAFCGAGFGRRSYLVTHQRTHTGERPYPCPHCGRSFSQSSALARHQAVHTADRPHCCPDCGQAFRLRADFQRHRRGGGCSEPSADGPRREPCETVPTAGPEEAETGPEGPEEPEVGEADGEAEAEAEEREVAVELPAPGSKEDPEPDRRFLELGNGLGEGEGPSSHPLGFHFPVHPKSWLHPDGFPILGLPDFGERLQADRRPLPGPLGGRLSLVEGAGLACDPFGGSAGAGGGGGGLRAFAPAVGGLLAEPAPAALAEEESPWICSDCGKTFGRRAALAKHQRYHAGERPHRCADCGKSFVYGSHLARHRRTHTGERPFPCPECGARFARGSHLAAHVRGHTGEKPFVCGVCGAGFSRRAHLTAHGRAHTGERPYACGECGRRFGQSAALTRHQWAHAEEKPHRCPDCGKGFGHSSDFKRHRRTHTGEKPFRCTDCGRGFAQRSNLAKHRRGHTGERPFPCPECGKRFSQRSVLVTHQRTHTGERPYACANCGRRFSQSSHLLTHMKTHRGAAGAAGPAPAAPASKAEAPAKGPPGAGAGTGPGEHGGILLEFAGGTSFGSEPTTAFAGPSGAYEESVM", "length": 1000, "header": "tr|A0A5G2QUR8-1|A0A5G2QUR8_PIG Isoform 1 of Zinc finger protein 316 OS=Sus scrofa OX=9823 GN=ZNF316 PE=3 SV=1 CANONICAL=A0A5G2QUR8-1" }, "locus": { "chromosome": "3", "start_pos": 4565790, "end_pos": 4555443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068578.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068578.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1000, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUR8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 335, "end_pos": 362, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QUR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUR8" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 219, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUS8-1", "uniprot_ac": "A0A5G2QUS8", "uniprot_id": "A0A5G2QUS8_PIG", "mass": { "chemical_mass": 36923.0, "monoisotopic_mass": 36923.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUS8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUS8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050470", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050470", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERLKYRQDTIKLLEENIGKTLSDINTMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIASNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKYPSTDDWIRKRWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMISLITGI", "length": 311, "header": "tr|A0A5G2QUS8-1|A0A5G2QUS8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUS8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8/entry", "sequence": { "sequence": "MAERLKYRQDTIKLLEENIGKTLSDINTMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIASNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKYPSTDDWIRKRWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMISLITGI", "length": 311, "header": "tr|A0A5G2QUS8-1|A0A5G2QUS8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUS8-1" }, "locus": { "chromosome": "5", "start_pos": 32620894, "end_pos": 32619962, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085295.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085295.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068716.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068716.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 161, "end_pos": 163, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUS8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUS8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUS8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 161, "end_pos": 163 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUT8-1", "uniprot_ac": "A0A5G2QUT8", "uniprot_id": "A0A5G2QUT8_PIG", "mass": { "chemical_mass": 20763.0, "monoisotopic_mass": 20763.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUT8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUT8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050806", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050806", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEKSSTLPVALPWASCVWKTSLRVGTVGWGRLLPAASACSPSTSREVSLLLGFFFLSSPRGILPGRGRAATCAPTAASLAWAPGLCAKGLPARGRCSLGWANGRGASAWPRLAPRGQGPLLLWEELHLHAEQPPARPLDGCGRRKVGPSGQEMLPIIPVLQEINLQPLPAAPMVCPEGNSGRRTRGSILCFGYWP", "length": 196, "header": "tr|A0A5G2QUT8-1|A0A5G2QUT8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUT8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8/entry", "sequence": { "sequence": "MLEKSSTLPVALPWASCVWKTSLRVGTVGWGRLLPAASACSPSTSREVSLLLGFFFLSSPRGILPGRGRAATCAPTAASLAWAPGLCAKGLPARGRCSLGWANGRGASAWPRLAPRGQGPLLLWEELHLHAEQPPARPLDGCGRRKVGPSGQEMLPIIPVLQEINLQPLPAAPMVCPEGNSGRRTRGSILCFGYWP", "length": 196, "header": "tr|A0A5G2QUT8-1|A0A5G2QUT8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUT8-1" }, "locus": { "chromosome": "6", "start_pos": 135218121, "end_pos": 135217534, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083804.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083804.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068726.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068726.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUT8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUT8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUT8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUT8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUW0-1", "uniprot_ac": "A0A5G2QUW0", "uniprot_id": "A0A5G2QUW0_PIG", "mass": { "chemical_mass": 98850.0, "monoisotopic_mass": 98850.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QUW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QUW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUW0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUW0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047791", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047791", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLHIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QUW0-1|A0A5G2QUW0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUW0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLHIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QUW0-1|A0A5G2QUW0_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUW0-1" }, "locus": { "chromosome": "15", "start_pos": 51026733, "end_pos": 51024199, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061956.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061956.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUW0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 845, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUW0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUW0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUW0" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 345, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 695, "end_pos": 697 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUX1-1", "uniprot_ac": "A0A5G2QUX1", "uniprot_id": "A0A5G2QUX1_PIG", "mass": { "chemical_mass": 107576.0, "monoisotopic_mass": 107576.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QUX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QUX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUX1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042387", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042387", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTTREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAK", "length": 925, "header": "tr|A0A5G2QUX1-1|A0A5G2QUX1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUX1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1/entry", "sequence": { "sequence": "MIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTTREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAK", "length": 925, "header": "tr|A0A5G2QUX1-1|A0A5G2QUX1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUX1-1" }, "locus": { "chromosome": "1", "start_pos": 58778494, "end_pos": 58775720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072594.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072594.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067939.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067939.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUX1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 925, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUX1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 675, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 370, "end_pos": 372 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUX2-1", "uniprot_ac": "A0A5G2QUX2", "uniprot_id": "A0A5G2QUX2_PIG", "mass": { "chemical_mass": 22054.0, "monoisotopic_mass": 22054.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048752", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048752", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNGIASLISPSDLSLLVYRNADDFCVLIFYPATLPNSSMSSNSFLVEPLGFSRYTIMSSANSDSFTFSFPIWIPFISFTSLNAMARTSKTMLSSSGESRHPCLVPDLSGNSFSFSPLRMMLAVGLSYMAFVMLRYVLSMSTFCRVFIRNGCWILPKAFSVSIEKIYMVFVLQFVNVVYHTDGFADIEESLHPGINPT", "length": 198, "header": "tr|A0A5G2QUX2-1|A0A5G2QUX2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2/entry", "sequence": { "sequence": "MVNGIASLISPSDLSLLVYRNADDFCVLIFYPATLPNSSMSSNSFLVEPLGFSRYTIMSSANSDSFTFSFPIWIPFISFTSLNAMARTSKTMLSSSGESRHPCLVPDLSGNSFSFSPLRMMLAVGLSYMAFVMLRYVLSMSTFCRVFIRNGCWILPKAFSVSIEKIYMVFVLQFVNVVYHTDGFADIEESLHPGINPT", "length": 198, "header": "tr|A0A5G2QUX2-1|A0A5G2QUX2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX2-1" }, "locus": { "chromosome": "15", "start_pos": 31384735, "end_pos": 31383630, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071901.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071901.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061971.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061971.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUX2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 198, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUX2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUX3-1", "uniprot_ac": "A0A5G2QUX3", "uniprot_id": "A0A5G2QUX3_PIG", "mass": { "chemical_mass": 47584.0, "monoisotopic_mass": 47584.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QUX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029231", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029231", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000034920", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034920", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000045883", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045883", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0C3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0C3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0C3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLB2", "url": "https://www.uniprot.org/uniprotkb/K7GLB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLB2-1", "url": "https://www.uniprot.org/uniprotkb/K7GLB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPMLPGLLCLGEMSCDLVSLVLPGTLPKPTLWAEPGPLVTRGSPVTIWCHWALWAQEFHLFKEGSPTPWDRLSPLEAGDKAKFSIQYMTQVYAGRYRCYYISPTGRSEPSDTLELVVTGASKKPTLSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSSWTLDTQRCPDRQTRALFPVGPVTPSHRGTFRCYGYFRDKPQVWSHPSDPLELLVSGEGGTAWSQRLWGGGAPGQEPKGVMGEAAPNPGLSLPRGLWEALPPDPQGPVVASGQSLTLKCCSAISYDRFALAKEGTQDLPQSPAWQPQAGLSQAHFPLGQVSSHPGGRYRCYGGHNLSSLWSAPSDPLDILVADEEPAGQAGTQPLHRPCWGSPRGDAGTRGRGPQGGRDRQTGGGGMGRLRETQTHTDEGPRRGPAESLFRTRPAGSPSPLPSLQDGSLA", "length": 444, "header": "tr|A0A5G2QUX3-1|A0A5G2QUX3_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUX3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3/entry", "sequence": { "sequence": "MTPMLPGLLCLGEMSCDLVSLVLPGTLPKPTLWAEPGPLVTRGSPVTIWCHWALWAQEFHLFKEGSPTPWDRLSPLEAGDKAKFSIQYMTQVYAGRYRCYYISPTGRSEPSDTLELVVTGASKKPTLSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSSWTLDTQRCPDRQTRALFPVGPVTPSHRGTFRCYGYFRDKPQVWSHPSDPLELLVSGEGGTAWSQRLWGGGAPGQEPKGVMGEAAPNPGLSLPRGLWEALPPDPQGPVVASGQSLTLKCCSAISYDRFALAKEGTQDLPQSPAWQPQAGLSQAHFPLGQVSSHPGGRYRCYGGHNLSSLWSAPSDPLDILVADEEPAGQAGTQPLHRPCWGSPRGDAGTRGRGPQGGRDRQTGGGGMGRLRETQTHTDEGPRRGPAESLFRTRPAGSPSPLPSLQDGSLA", "length": 444, "header": "tr|A0A5G2QUX3-1|A0A5G2QUX3_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUX3-1" }, "locus": { "chromosome": "6", "start_pos": 58680022, "end_pos": 58678111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078440.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078440.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065762.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065762.2" } ] } }, { "isoform_ac": "A0A5G2R0C3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0C3/entry", "sequence": { "sequence": "MTPMLPGLLCLGEMQGTLPKPTLWAEPGPLVTRGSPVTIWCHWALWAQEFHLFKEGSPTPWDRLSPLEAGDKAKFSIQYMTQVYAGRYRCYYISPTGRSEPSDTLELVVTGASKKPTLSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSSWTLDTQRCPDRQTRALFPVGPVTPSHRGTFRCYGYFRDKPQVWSHPSDPLELLVSGEGGGTRVGLWEALPPDPQGPVVASGQSLTLKCCSAISYDRFALAKEGTQDLPQSPAWQPQAGLSQAHFPLGQVSSHPGGRYRCYGGHNLSSLWSAPSDPLDILVPRPPLTPPSPPSSSPAADAQDQNLCEQKRRVALGVGAESSVGGEGAGSPRWGKDRCSTHHPPSGHRGSSTERSQGVLPSKASLPVLPQQMLP", "length": 408, "header": "tr|A0A5G2R0C3-1|A0A5G2R0C3_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QUX3-1" }, "locus": { "chromosome": "6", "start_pos": 58680022, "end_pos": 58677287, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070599.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070599.2" } ] } }, { "isoform_ac": "K7GLB2-1", "url": "https://www.uniprot.org/uniprotkb/K7GLB2/entry", "sequence": { "sequence": "MTPMLPGLLCLGEMQGTLPKPTLWAEPGPLVTRGSPVTIWCHWALWAQEFHLFKEGSPTPWDRLSPLEAGDKAKFSIQYMTQVYAGRYRCYYISPTGRSEPSDTLELVVTGASKKPTLSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSSWTLDTQRCPDRQTRALFPVGPVTPSHRGTFRCYGYFRDKPQVWSHPSDPLELLVSGEGGTAWQPLTPSLSPGRLIGIAYISVHPGPSVAAGQNVTLLCRSWVPMDTFLLSKEGAAQEVR", "length": 275, "header": "tr|K7GLB2-1|K7GLB2_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=8 CANONICAL=A0A5G2QUX3-1" }, "locus": { "chromosome": "6", "start_pos": 58680022, "end_pos": 58677983, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035860.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035860.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028641.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028641.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 188, "start_aa": "Thr", "end_pos": 188, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr188", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 68, "start_aa": "Thr", "end_pos": 68, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr68", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "immune response-inhibiting cell surface receptor signaling pathway", "id": "GO:0002767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002767", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "inhibitory MHC class I receptor activity", "id": "GO:0032396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032396", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 444, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX3" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 197, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 68, 188 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 }, { "start_pos": 339, "end_pos": 341 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUX5-1", "uniprot_ac": "A0A5G2QUX5", "uniprot_id": "A0A5G2QUX5_PIG", "mass": { "chemical_mass": 21288.0, "monoisotopic_mass": 21288.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUX5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048448", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048448", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RGTGTHALPGSTREISELRNILQQLQPGTLGRSACMVLSAARKAAPACVADPHTRQAEPGPRHRGSAGEAPYPSFGSLRMVLILAHRPVSSSNPQAQRKEPAKAGRRERRPPQTRRSGAQERGQCPICTGSFSLEVLPQHAATCGETASPSSSPSASPAELWVSPESSPPRPWIQCPICQLPFPAGEIEEHASVCGEAPQA", "length": 201, "header": "tr|A0A5G2QUX5-1|A0A5G2QUX5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5/entry", "sequence": { "sequence": "RGTGTHALPGSTREISELRNILQQLQPGTLGRSACMVLSAARKAAPACVADPHTRQAEPGPRHRGSAGEAPYPSFGSLRMVLILAHRPVSSSNPQAQRKEPAKAGRRERRPPQTRRSGAQERGQCPICTGSFSLEVLPQHAATCGETASPSSSPSASPAELWVSPESSPPRPWIQCPICQLPFPAGEIEEHASVCGEAPQA", "length": 201, "header": "tr|A0A5G2QUX5-1|A0A5G2QUX5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX5-1" }, "locus": { "chromosome": "9", "start_pos": 6477150, "end_pos": 6470840, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075637.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075637.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068633.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068633.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUX5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 201, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUX5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUX8-1", "uniprot_ac": "A0A5G2QUX8", "uniprot_id": "A0A5G2QUX8_PIG", "mass": { "chemical_mass": 11625.0, "monoisotopic_mass": 11625.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QUX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUX8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047110", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047110", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QUX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSFLRKLHTVFHSGCTNLQSHQQCTRVPFSPHPPQHLLLVDFLMLAILAGVRWYLIVVLICISLIMSDVEHLFMCFLAICMSLKNYLFRSSAHFLIILF", "length": 100, "header": "tr|A0A5G2QUX8-1|A0A5G2QUX8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8/entry", "sequence": { "sequence": "MFSFLRKLHTVFHSGCTNLQSHQQCTRVPFSPHPPQHLLLVDFLMLAILAGVRWYLIVVLICISLIMSDVEHLFMCFLAICMSLKNYLFRSSAHFLIILF", "length": 100, "header": "tr|A0A5G2QUX8-1|A0A5G2QUX8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QUX8-1" }, "locus": { "chromosome": "13", "start_pos": 96163538, "end_pos": 96163121, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076731.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076731.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068771.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068771.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUX8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 100, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUX8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUX8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUY4-1", "uniprot_ac": "A0A5G2QUY4", "uniprot_id": "A0A5G2QUY4_PIG", "mass": { "chemical_mass": 30416.0, "monoisotopic_mass": 30416.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Vomeronasal type-1 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2QUY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QUY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044749", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044749", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPLNNAFFFQAATGILANSLLLLFRIITLFLNHRTKLTNLITCHLALVHIVMFLTILFSLSPDLFSSLDFQNGFKCKVFFYMYRVMRSLSIYTTSLLSVFQAIIISPSESWLVRFRHTFRNYITLYFSLNKHCSLSSINSIVSGLFFTLTISSDVSFVGLMVVSSAYMMILLFRHQRQSRYLHSTSLSSGITPEKKSHQNHPSADTFFCGHVLDELYHVIFPFLVGVNNLIILGLQRILVNVYAIVSPLVLTGYDKRIINILQCM", "length": 266, "header": "tr|A0A5G2QUY4-1|A0A5G2QUY4_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QUY4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4/entry", "sequence": { "sequence": "MLPLNNAFFFQAATGILANSLLLLFRIITLFLNHRTKLTNLITCHLALVHIVMFLTILFSLSPDLFSSLDFQNGFKCKVFFYMYRVMRSLSIYTTSLLSVFQAIIISPSESWLVRFRHTFRNYITLYFSLNKHCSLSSINSIVSGLFFTLTISSDVSFVGLMVVSSAYMMILLFRHQRQSRYLHSTSLSSGITPEKKSHQNHPSADTFFCGHVLDELYHVIFPFLVGVNNLIILGLQRILVNVYAIVSPLVLTGYDKRIINILQCM", "length": 266, "header": "tr|A0A5G2QUY4-1|A0A5G2QUY4_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QUY4-1" }, "locus": { "chromosome": "2", "start_pos": 57196091, "end_pos": 57195203, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074205.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074205.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067949.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067949.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to pheromone", "id": "GO:0019236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pheromone binding", "id": "GO:0005550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005550", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "pmid": "" }, { "name": "pheromone receptor activity", "id": "GO:0016503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 266, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUY4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV32-1", "uniprot_ac": "A0A5G2QV32", "uniprot_id": "A0A5G2QV32_PIG", "mass": { "chemical_mass": 77400.0, "monoisotopic_mass": 77400.0 }, "refseq": {}, "gene_names": [ { "name": "FNDC7", "type": "recommended", "evidence": [ { "id": "A0A5G2QV32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32" } ] } ], "protein_names": [ { "name": "Fibronectin type III domain containing 7", "type": "synonym", "evidence": [ { "id": "A0A5G2QV32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FNDC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32", "locus": { "chromosome": "4", "start_pos": 111299353, "end_pos": 111328378, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032160", "url": "https://www.ensembl.org/id/ENSSSCG00000032160" } ] } } ], "crossref": [ { "id": "A0A5G2QV32", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV32", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032160", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032160", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47135", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47135", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47135:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47135:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QV32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGSMECVSVIGFSLIYLKMVASVKTAPEIPSIDQAYSKISNSITVEWATVPGATSYLLTAEDGNTVIETMVAGSPGTVTGLKAATLYQITVRSVSAAGRSQPSPPKQAKTVLAAPILEVSSPSPDSILVQWEAVYMAMGFSVSIMRANGLGRVWKENTTNTSLTFTSLDAGTLYTIKAYAWNANGTPGDDSTCNQRTSPRAPANIQVSFDSGALKASVSWAPTEGAFNYTVVALSDSSKLSCSTTFSSCTISSLHCGTEYLISVLASNDAGSSKSTSAVTLKTVACAPGRVTIQEDPGHLSVAWSTVVLGDYYVAFVKSDDGLEVHCNTSLTQCNFLSECGFTYFISVFAYNKAGQSPLGDVFNYTTAPCCPSDINPVLVSSDRVEIVWSPVRGAELYETKAVDGFSVVECNDTAPACTLSALECDTKYNITVYSFSEVRGSNTSCASRFITTAPCSPEITNISKDAFSMIHVRWRPTNDDATYTVTAQGEKGQYQCSSSRESCALGGLPCGFVFSVTAVAETRAGRSLPSYTVPLETVPCCPASLTVTQVTQSVINVSWTIGTGAQTYVTVLESHTGQSKCHTHQNHCLLGCITCGINYTVALKAISATGLTADCTYQSYSSGACCPLGVKLYRLGPNGIRIYWQAARGSANYSTDLYGSKGIFTCAPSAGLSFCDVAEIPCGDVYTVMVSPVAETGLKLTFCPKKIYSVTCSGSTLGMVIYRGKRNAE", "length": 732, "header": "tr|A0A5G2QV32-1|A0A5G2QV32_PIG Isoform 1 of Fibronectin type III domain containing 7 OS=Sus scrofa OX=9823 GN=FNDC7 PE=4 SV=1 CANONICAL=A0A5G2QV32-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32/entry", "sequence": { "sequence": "MAAGSMECVSVIGFSLIYLKMVASVKTAPEIPSIDQAYSKISNSITVEWATVPGATSYLLTAEDGNTVIETMVAGSPGTVTGLKAATLYQITVRSVSAAGRSQPSPPKQAKTVLAAPILEVSSPSPDSILVQWEAVYMAMGFSVSIMRANGLGRVWKENTTNTSLTFTSLDAGTLYTIKAYAWNANGTPGDDSTCNQRTSPRAPANIQVSFDSGALKASVSWAPTEGAFNYTVVALSDSSKLSCSTTFSSCTISSLHCGTEYLISVLASNDAGSSKSTSAVTLKTVACAPGRVTIQEDPGHLSVAWSTVVLGDYYVAFVKSDDGLEVHCNTSLTQCNFLSECGFTYFISVFAYNKAGQSPLGDVFNYTTAPCCPSDINPVLVSSDRVEIVWSPVRGAELYETKAVDGFSVVECNDTAPACTLSALECDTKYNITVYSFSEVRGSNTSCASRFITTAPCSPEITNISKDAFSMIHVRWRPTNDDATYTVTAQGEKGQYQCSSSRESCALGGLPCGFVFSVTAVAETRAGRSLPSYTVPLETVPCCPASLTVTQVTQSVINVSWTIGTGAQTYVTVLESHTGQSKCHTHQNHCLLGCITCGINYTVALKAISATGLTADCTYQSYSSGACCPLGVKLYRLGPNGIRIYWQAARGSANYSTDLYGSKGIFTCAPSAGLSFCDVAEIPCGDVYTVMVSPVAETGLKLTFCPKKIYSVTCSGSTLGMVIYRGKRNAE", "length": 732, "header": "tr|A0A5G2QV32-1|A0A5G2QV32_PIG Isoform 1 of Fibronectin type III domain containing 7 OS=Sus scrofa OX=9823 GN=FNDC7 PE=4 SV=1 CANONICAL=A0A5G2QV32-1" }, "locus": { "chromosome": "4", "start_pos": 111328271, "end_pos": 111300320, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084526.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084526.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067994.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067994.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 188, "start_aa": "Thr", "end_pos": 188, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr188", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 559, "end_pos": 561, "annotation": "n_glycosylation_sequon" }, { "start_pos": 601, "end_pos": 603, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV32-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 732, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV32-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV32" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV32" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 115, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 188 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 162, "end_pos": 164 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 330, "end_pos": 332 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 464, "end_pos": 466 }, { "start_pos": 559, "end_pos": 561 }, { "start_pos": 601, "end_pos": 603 }, { "start_pos": 655, "end_pos": 657 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV40-1", "uniprot_ac": "A0A5G2QV40", "uniprot_id": "A0A5G2QV40_PIG", "mass": { "chemical_mass": 74086.0, "monoisotopic_mass": 74086.0 }, "refseq": {}, "gene_names": [ { "name": "ZFTA", "type": "recommended", "evidence": [ { "id": "A0A5G2QV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" } ] } ], "protein_names": [ { "name": "Zinc finger translocation associated", "type": "synonym", "evidence": [ { "id": "A0A5G2QV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFTA", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40", "locus": { "chromosome": "2", "start_pos": 8288190, "end_pos": 8282127, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031666", "url": "https://www.ensembl.org/id/ENSSSCG00000031666" } ] } } ], "crossref": [ { "id": "A0A5G2QV40", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV40", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031666", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031666", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34589:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34589:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QV40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEP3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSGDHRSRSGGGRGGPGPAAASARGRRLPPSGSSGGAEEEDDGGQELQLEGGALGSWGSAPLPSSRARGPASSGRKYSDHCEARASRPGKSRIPGRDHRRYYHDHWRLEYLMDFNPARHGMVCMVCGSSLATLKLSTIKRHIRQKHPYSLHWSPREKEVISNSWDAHLGLGACGEAEGLGAQGPEEEEEEEEEEEEEGAGLPACPPKGPGKAPAGGGDRRQRRGGPVAPRARRRRLSASRRAGGSRGLGPRRLERRLKESLQNWFRAECLMDYDPRGNRLVCMACGRALPSLHLDDIRSHVLEVHPSSLGLSGPQRSALLQAWRGQPEALSELTQSPADDDLVPQDLTRKSRDSASAAGAPSSQDLSPPDVKEEAGWVPERPGLAEEEELEEGERVGVQDRAPRGRDQRRHYRERWRLEYLMELDGGRRGLVCMVCGGALASLKMSTIKRHIRQRHPGSTRLSGPVKALIAQEWSDKAAHLLALGLPCPESPRDPAAPSTAAASEEGGGEEEEEPEEEEEEEWWGDVPLSPGEPSERPAEEEDDDEDGPEPAGLAFPPLPPPPPPPPPPPPRSREQRRNYQPRWRGEYLMDYDGSRRGLVCMVCGGALATLKVSTIKRHILQVHPFSMDFTPEERQTILEAYEEAALRCYGHEGFGPPAPAPRDGGADLKAGAVCRA", "length": 679, "header": "tr|A0A5G2QV40-1|A0A5G2QV40_PIG Isoform 1 of Zinc finger translocation associated OS=Sus scrofa OX=9823 GN=ZFTA PE=4 SV=1 CANONICAL=A0A5G2QV40-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40/entry", "sequence": { "sequence": "MEPSGDHRSRSGGGRGGPGPAAASARGRRLPPSGSSGGAEEEDDGGQELQLEGGALGSWGSAPLPSSRARGPASSGRKYSDHCEARASRPGKSRIPGRDHRRYYHDHWRLEYLMDFNPARHGMVCMVCGSSLATLKLSTIKRHIRQKHPYSLHWSPREKEVISNSWDAHLGLGACGEAEGLGAQGPEEEEEEEEEEEEEGAGLPACPPKGPGKAPAGGGDRRQRRGGPVAPRARRRRLSASRRAGGSRGLGPRRLERRLKESLQNWFRAECLMDYDPRGNRLVCMACGRALPSLHLDDIRSHVLEVHPSSLGLSGPQRSALLQAWRGQPEALSELTQSPADDDLVPQDLTRKSRDSASAAGAPSSQDLSPPDVKEEAGWVPERPGLAEEEELEEGERVGVQDRAPRGRDQRRHYRERWRLEYLMELDGGRRGLVCMVCGGALASLKMSTIKRHIRQRHPGSTRLSGPVKALIAQEWSDKAAHLLALGLPCPESPRDPAAPSTAAASEEGGGEEEEEPEEEEEEEWWGDVPLSPGEPSERPAEEEDDDEDGPEPAGLAFPPLPPPPPPPPPPPPRSREQRRNYQPRWRGEYLMDYDGSRRGLVCMVCGGALATLKVSTIKRHILQVHPFSMDFTPEERQTILEAYEEAALRCYGHEGFGPPAPAPRDGGADLKAGAVCRA", "length": 679, "header": "tr|A0A5G2QV40-1|A0A5G2QV40_PIG Isoform 1 of Zinc finger translocation associated OS=Sus scrofa OX=9823 GN=ZFTA PE=4 SV=1 CANONICAL=A0A5G2QV40-1" }, "locus": { "chromosome": "2", "start_pos": 8287186, "end_pos": 8282127, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083045.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083045.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068836.1" } ] } }, { "isoform_ac": "A0A8W4FEP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEP3/entry", "sequence": { "sequence": "MEPSGDHRSRSGGGRGGPGPAAASARGRRLPPSGSSGGAEEEDDGD", "length": 46, "header": "tr|A0A8W4FEP3-1|A0A8W4FEP3_PIG Computationally mapped isoform of Zinc finger translocation associated OS=Sus scrofa OX=9823 GN=ZFTA PE=4 SV=1 CANONICAL=A0A5G2QV40-1" }, "locus": { "chromosome": "2", "start_pos": 8283183, "end_pos": 8282127, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106004.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106004.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077889.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077889.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV40-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 679, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV40-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV40" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV40" }, { "id": "SM00355", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00355" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 123, "end_pos": 148, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV41-1", "uniprot_ac": "A0A5G2QV41", "uniprot_id": "A0A5G2QV41_PIG", "mass": { "chemical_mass": 11888.0, "monoisotopic_mass": 11888.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QV41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV41", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV41", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050990", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050990", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34349:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34349:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15691", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15691", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QV41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RFLLEKDTGCLGVQRPAHPPKLSLCHRYFENIPKCLDREGWTRGGIQPQKPGSRALNQPVTCTEAVPSPTESLRRLHPHVGRSLISADPLYRASPHSSHGSRFTAPN", "length": 107, "header": "tr|A0A5G2QV41-1|A0A5G2QV41_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV41-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV41-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41/entry", "sequence": { "sequence": "RFLLEKDTGCLGVQRPAHPPKLSLCHRYFENIPKCLDREGWTRGGIQPQKPGSRALNQPVTCTEAVPSPTESLRRLHPHVGRSLISADPLYRASPHSSHGSRFTAPN", "length": 107, "header": "tr|A0A5G2QV41-1|A0A5G2QV41_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV41-1" }, "locus": { "chromosome": "2", "start_pos": 10038780, "end_pos": 10038060, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072438.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072438.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068708.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068708.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 70, "start_aa": "Thr", "end_pos": 70, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr70", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV41-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV41-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV41" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 70 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV43-1", "uniprot_ac": "A0A5G2QV43", "uniprot_id": "A0A5G2QV43_PIG", "mass": { "chemical_mass": 17908.0, "monoisotopic_mass": 17908.0 }, "refseq": {}, "gene_names": [ { "name": "PLAAT3", "type": "recommended", "evidence": [ { "id": "A0A5G2QV43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ] } ], "protein_names": [ { "name": "Phospholipase A and acyltransferase 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QV43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLAAT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43", "locus": { "chromosome": "2", "start_pos": 8444595, "end_pos": 8413388, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026914", "url": "https://www.ensembl.org/id/ENSSSCG00000026914" } ] } } ], "crossref": [ { "id": "A0A5G2QV43", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026914", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026914", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PYCIFRG", "url": "https://omabrowser.org/oma/group/PYCIFRG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV43", "url": "https://www.orthodb.org/?gene=A0A5G2QV43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13943", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13943", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13943:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13943:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04970", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04970", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482788", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QMA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPG4", "url": "https://www.uniprot.org/uniprotkb/I3LPG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPG4-1", "url": "https://www.uniprot.org/uniprotkb/I3LPG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GRH9", "url": "https://www.uniprot.org/uniprotkb/K7GRH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GRH9-1", "url": "https://www.uniprot.org/uniprotkb/K7GRH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 162, "header": "tr|A0A5G2QV43-1|A0A5G2QV43_PIG Isoform 1 of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=1 CANONICAL=A0A5G2QV43-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMA0/entry", "sequence": { "sequence": "PGPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 159, "header": "tr|A0A5G2QMA0-1|A0A5G2QMA0_PIG Computationally mapped isoform of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=2 CANONICAL=A0A5G2QV43-1" }, "locus": { "chromosome": "2", "start_pos": 8442318, "end_pos": 8427241, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083927.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083927.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065733.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065733.2" } ] } }, { "isoform_ac": "A0A5G2QV43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43/entry", "sequence": { "sequence": "MRALIPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 162, "header": "tr|A0A5G2QV43-1|A0A5G2QV43_PIG Isoform 1 of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=1 CANONICAL=A0A5G2QV43-1" }, "locus": { "chromosome": "2", "start_pos": 8442318, "end_pos": 8414019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097202.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097202.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076202.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076202.1" } ] } }, { "isoform_ac": "A0A8W4FPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ9/entry", "sequence": { "sequence": "FLVLQPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 162, "header": "tr|A0A8W4FPQ9-1|A0A8W4FPQ9_PIG Computationally mapped isoform of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=1 CANONICAL=A0A5G2QV43-1" }, "locus": { "chromosome": "2", "start_pos": 8442318, "end_pos": 8427285, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104027.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104027.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080305.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080305.1" } ] } }, { "isoform_ac": "I3LPG4-1", "url": "https://www.uniprot.org/uniprotkb/I3LPG4/entry", "sequence": { "sequence": "QGPQPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 161, "header": "tr|I3LPG4-1|I3LPG4_PIG Computationally mapped isoform of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=5 CANONICAL=A0A5G2QV43-1" }, "locus": { "chromosome": "2", "start_pos": 8442318, "end_pos": 8426273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031257.5", "url": "https://www.ensembl.org/id/ENSSSCT00000031257.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025991.5", "url": "https://www.ensembl.org/id/ENSSSCP00000025991.5" } ] } }, { "isoform_ac": "K7GRH9-1", "url": "https://www.uniprot.org/uniprotkb/K7GRH9/entry", "sequence": { "sequence": "MRLQPEPQLGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEIAGAGAASLMSALTDKALVKKELLYEVAGRDRYQVNNKHDGKYSPLPPSKIVQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDAIVAAGIAGVGLAAVSFIGVMLSRNKRQKQ", "length": 161, "header": "tr|K7GRH9-1|K7GRH9_PIG Computationally mapped isoform of Phospholipase A and acyltransferase 3 OS=Sus scrofa OX=9823 GN=PLAAT3 PE=1 SV=2 CANONICAL=A0A5G2QV43-1" }, "locus": { "chromosome": "2", "start_pos": 8442318, "end_pos": 8426675, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035582.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035582.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030506.4", "url": "https://www.ensembl.org/id/ENSSSCP00000030506.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1482788", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "resource": "Reactome", "description": "Acyl chain remodelling of PC" }, { "id": "R-SSC-1482801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "resource": "Reactome", "description": "Acyl chain remodelling of PS" }, { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" }, { "id": "R-SSC-1482922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482922", "resource": "Reactome", "description": "Acyl chain remodelling of PI" } ], "orthologs": [ { "uniprot_canonical_ac": "P53816-1", "protein_name": "Phospholipase A and acyltransferase 3", "gene_name": "PLAAT3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ", "length": 162 }, "evidence": [ { "id": "A0A5G2QV43", "url": "https://omabrowser.org/oma/group/A0A5G2QV43/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R3U1-1", "protein_name": "Phospholipase A and acyltransferase 3", "gene_name": "Plaat3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAPIPEPKPGDLIEIFRPMYRHWAIYVGDGYVIHLAPPSEIAGAGAASIMSALTDKAIVKKELLCHVAGKDKYQVNNKHDEEYTPLPLSKIIQRAERLVGQEVLYRLTSENCEHFVNELRYGVPRSDQVRDAVKAVGIAGVGLAALGLVGVMLSRNKKQKQ", "length": 162 }, "evidence": [ { "id": "A0A5G2QV43", "url": "https://omabrowser.org/oma/group/A0A5G2QV43/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "phospholipase A1 activity", "id": "GO:0008970", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008970", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "N-acyltransferase activity", "id": "GO:0016410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 11, "go_terms": [ { "name": "lens fiber cell differentiation", "id": "GO:0070306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070306", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "N-acylphosphatidylethanolamine metabolic process", "id": "GO:0070292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070292", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "organelle disassembly", "id": "GO:1903008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "triglyceride metabolic process", "id": "GO:0006641", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006641", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "peroxisome organization", "id": "GO:0007031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "ether lipid metabolic process", "id": "GO:0046485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046485", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "phospholipid biosynthetic process", "id": "GO:0008654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "regulation of adipose tissue development", "id": "GO:1904177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904177", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" }, { "name": "membrane disassembly", "id": "GO:0030397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030397", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 162, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV43" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV43" }, { "id": "PS51934", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51934" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRAT", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 129, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV46-1", "uniprot_ac": "A0A5G2QV46", "uniprot_id": "A0A5G2QV46_PIG", "mass": { "chemical_mass": 33175.0, "monoisotopic_mass": 33175.0 }, "refseq": { "ac": "XP_003354565", "name": "BTB/POZ domain-containing protein KCTD7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354565" }, "gene_names": [ { "name": "KCTD7", "type": "recommended", "evidence": [ { "id": "A0A5G2QV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ] }, { "name": "KCTD7", "type": "synonym", "evidence": [ { "id": "XP_003354565", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354565" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD7", "type": "recommended", "evidence": [ { "id": "A0A5G2QV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46/entry#names_and_taxonomy" } ] }, { "name": "BTB/POZ domain-containing protein KCTD7", "type": "synonym", "evidence": [ { "id": "XP_003354565", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354565" } ] } ], "function": [ { "annotation": "May be involved in the control of excitability of cortical neurons.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46#function" }, { "database": "UniProtKB", "id": "ARBA00056682", "url": "https://www.uniprot.org/uniprotkb/ARBA00056682#function" }, { "database": "UniProtKB", "id": "A0A5G2QWA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA3#function" }, { "database": "UniProtKB", "id": "A0A5G2R947", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R947#function" }, { "database": "UniProtKB", "id": "A0A287BGK9", "url": "https://www.uniprot.org/uniprotkb/A0A287BGK9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCTD7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46", "locus": { "chromosome": "3", "start_pos": 16385006, "end_pos": 16393841, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040985", "url": "https://www.ensembl.org/id/ENSSSCG00000040985" } ] } } ], "crossref": [ { "id": "A0A5G2QV46", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV46", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040985", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040985", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18366", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18366", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100622993", "url": "https://www.ncbi.nlm.nih.gov/gene/100622993", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622993", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622993", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IAAEQQC", "url": "https://omabrowser.org/oma/group/IAAEQQC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV46", "url": "https://www.orthodb.org/?gene=A0A5G2QV46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003354565", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354565", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BGK9", "url": "https://www.uniprot.org/uniprotkb/A0A287BGK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R947", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R947", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R947-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R947-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVVTGREPDNRRPDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAYFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITWW", "length": 289, "header": "tr|A0A5G2QV46-1|A0A5G2QV46_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD7 OS=Sus scrofa OX=9823 GN=KCTD7 PE=4 SV=1 CANONICAL=A0A5G2QV46-1" }, "isoforms": [ { "isoform_ac": "A0A287BGK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGK9/entry", "sequence": { "sequence": "MVVVTGREPDNRRPDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAYFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITW", "length": 288, "header": "tr|A0A287BGK9-1|A0A287BGK9_PIG Computationally mapped isoform of BTB/POZ domain-containing protein KCTD7 OS=Sus scrofa OX=9823 GN=KCTD7 PE=4 SV=2 CANONICAL=A0A5G2QV46-1" }, "locus": { "chromosome": "3", "start_pos": 16393626, "end_pos": 16386098, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038052.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038052.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055189.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055189.2" } ] } }, { "isoform_ac": "A0A5G2QV46-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46/entry", "sequence": { "sequence": "MVVVTGREPDNRRPDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAYFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITWW", "length": 289, "header": "tr|A0A5G2QV46-1|A0A5G2QV46_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD7 OS=Sus scrofa OX=9823 GN=KCTD7 PE=4 SV=1 CANONICAL=A0A5G2QV46-1" }, "locus": { "chromosome": "3", "start_pos": 16393626, "end_pos": 16386097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101292.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101292.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079545.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079545.1" } ] } }, { "isoform_ac": "A0A5G2QWA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA3/entry", "sequence": { "sequence": "MVVVTGREPDNRRPDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAYFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITWWVIFSWGWNTHFRGSFQ", "length": 305, "header": "tr|A0A5G2QWA3-1|A0A5G2QWA3_PIG Computationally mapped isoform of BTB/POZ domain-containing protein KCTD7 OS=Sus scrofa OX=9823 GN=KCTD7 PE=4 SV=1 CANONICAL=A0A5G2QV46-1" }, "locus": { "chromosome": "3", "start_pos": 16393626, "end_pos": 16385312, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090192.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090192.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069229.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069229.1" } ] } }, { "isoform_ac": "A0A5G2R947-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R947/entry", "sequence": { "sequence": "MVVVTGREPDNRRPDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAYFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITWWVIFSWGWNTHFRGSFQ", "length": 239, "header": "tr|A0A5G2R947-1|A0A5G2R947_PIG Computationally mapped isoform of BTB/POZ domain-containing protein KCTD7 OS=Sus scrofa OX=9823 GN=KCTD7 PE=4 SV=1 CANONICAL=A0A5G2QV46-1" }, "locus": { "chromosome": "3", "start_pos": 16393626, "end_pos": 16385312, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082650.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082650.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072849.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072849.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622993", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622993", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P3Y5-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "KCTD7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVVVTGQSKGSGDPDEAMSSSDAEDDFQEPATPTATQAGQALPLLPQQFPEVVPLNVGGMHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGTYFGDILNFLRSGDLPPRERVRPVYKEAQYYSIGPLLDHLEDVQPLKGEKVRQAFLGLMPYYKDHLERIIEIAKLRAVQRKARFAKLKVCVFKEEMPITPYECPHFNSLRFERSESEAKLFEHHCEVDVSFGPWEAVADVYDLLHCIVTDLSDRGITVDHQCIGVCDKHLINHYYCKRPIYEFKITW", "length": 288 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4IFB4-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "KCTD7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVVTGREPDSRRPDGAMSSSDAEDDFLEPATPTATQAGHSLPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGAHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLINHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B1WC97-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "Kctd7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVVNGREPDSRHSDGAMSSSEAEDDFLEPATPTATQAGHGLPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPREHVRAVHKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLVNHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IKG2-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "Kctd7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVVVTGREPDSRHWDGAMSSSEAEDDFLEPATPTATQAGHGLPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPREHVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLSSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLVNHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0VFV7-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "kctd7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVVFSAASDSEKPGDAMSGADKGEEEYRKPAIPVANLNLAKSLRTLDAPEEFPEVIPLNVGGTYFTTRLSTLRRYEDTMLAAMFSGRHHIPRDAEGRYFIDRDGTYFGDILNFLREGELPQRDRVRAVHREAQYYAIGPLLENLEDTQPLTGEKVRQAFLDLLPYYKENLERIVEIAKLRAMQRKARFAKLKICVYKEEMPITPYERPLFNSLRFERSESEAKLFEHHCEVDVSFGPWEAVADVYDLLHCIVSDLAERGISADQQCIGVCDKHLINHYYCKRPIYEFKITWW", "length": 292 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5ZJP7-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "KCTD7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVVVTGQSKGSGDPDEAMSSSDAEDDFQEPATPTATQAGQALPLLPQQFPEVVPLNVGGMHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDAEGRYFIDRDGTYFGDILNFLRSGDLPPRERVRPVYKEAQYYSIGPLLDHLEDVQPLKGEKVRQAFLGLMPYYKDHLERIIEIAKLRAVQRKARFAKLKVCVFKEEMPITPYECPHFNSLRFERSESEAKLFEHHCEVDVSFGPWEAVADVYDLLHCIVTDLSDRGITVDHQCIGVCDKHLINHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8BJK1-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "Kctd7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVVVTGREPDSRHSDGAMSSSEAEDDFLEPATPTATQAGHGLPLLPQEFPEVVPLNIGGAHFTTRLSTLRRYEDTMLAAMFSGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPREHVRAVHKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLVNHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96MP8-1", "protein_name": "BTB/POZ domain-containing protein KCTD7", "gene_name": "KCTD7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVVTGREPDSRRQDGAMSSSDAEDDFLEPATPTATQAGHALPLLPQEFPEVVPLNIGGAHFTTRLSTLRCYEDTMLAAMFSGRHYIPTDSEGRYFIDRDGTHFGDVLNFLRSGDLPPRERVRAVYKEAQYYAIGPLLEQLENMQPLKGEKVRQAFLGLMPYYKDHLERIVEIARLRAVQRKARFAKLKVCVFKEEMPITPYECPLLNSLRFERSESDGQLFEHHCEVDVSFGPWEAVADVYDLLHCLVTDLSAQGLTVDHQCIGVCDKHLVNHYYCKRPIYEFKITWW", "length": 289 }, "evidence": [ { "id": "A0A5G2QV46", "url": "https://omabrowser.org/oma/group/A0A5G2QV46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" }, { "name": "membrane hyperpolarization", "id": "GO:0060081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060081", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" }, { "name": "intracellular potassium ion homeostasis", "id": "GO:0030007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030007", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" }, { "name": "intracellular glutamate homeostasis", "id": "GO:0090461", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090461", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV46-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 289, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV46-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV46" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV46" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 149, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV52-1", "uniprot_ac": "A0A5G2QV52", "uniprot_id": "A0A5G2QV52_PIG", "mass": { "chemical_mass": 18024.0, "monoisotopic_mass": 18024.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QV52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV52", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV52", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049427", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049427", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPQKPQNCQSNPEEQKPSRRHNSPRLQATLQSQSHQDSVVVVPKQTDQWNRIENPEINPDAYGQLIFDKGSKNIKWEEDHLFSKHCWETWAATCKSMKLEHTLTPCMKINSKWIKDLNIRGDTIKLWEENIGKTLSDTKLTNVFSGQSLPKQQK", "length": 155, "header": "tr|A0A5G2QV52-1|A0A5G2QV52_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV52-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52/entry", "sequence": { "sequence": "MEPQKPQNCQSNPEEQKPSRRHNSPRLQATLQSQSHQDSVVVVPKQTDQWNRIENPEINPDAYGQLIFDKGSKNIKWEEDHLFSKHCWETWAATCKSMKLEHTLTPCMKINSKWIKDLNIRGDTIKLWEENIGKTLSDTKLTNVFSGQSLPKQQK", "length": 155, "header": "tr|A0A5G2QV52-1|A0A5G2QV52_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV52-1" }, "locus": { "chromosome": "AEMK02000234.1", "start_pos": 50827, "end_pos": 50363, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068156.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068156.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071037.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071037.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV52", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV52-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 155, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV52-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV52" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV58-1", "uniprot_ac": "A0A5G2QV58", "uniprot_id": "A0A5G2QV58_PIG", "mass": { "chemical_mass": 26454.0, "monoisotopic_mass": 26454.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Reverse transcriptase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QV58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV58", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048838", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048838", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQTKEVNDLYTENHKILIKEIKKDSKKWKYILGSWIRSINTIKMVILHKAIYRFNVISIKLCMRVCTELEQIIQKYIWNHKRPRIVKAILREKKKNRTGGVTLPYFRQYYKAIAIKTVWYRYKNKHTDQWNRIESPKINLDTYGQLIFNKGGNNIKMEKDSLFSKYCWQNWTAAFKSKEVEHTLTFHAKINSKWLKDLNMRRDTLKLLEENIGKHSLK", "length": 219, "header": "tr|A0A5G2QV58-1|A0A5G2QV58_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV58-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58/entry", "sequence": { "sequence": "MNQTKEVNDLYTENHKILIKEIKKDSKKWKYILGSWIRSINTIKMVILHKAIYRFNVISIKLCMRVCTELEQIIQKYIWNHKRPRIVKAILREKKKNRTGGVTLPYFRQYYKAIAIKTVWYRYKNKHTDQWNRIESPKINLDTYGQLIFNKGGNNIKMEKDSLFSKYCWQNWTAAFKSKEVEHTLTFHAKINSKWLKDLNMRRDTLKLLEENIGKHSLK", "length": 219, "header": "tr|A0A5G2QV58-1|A0A5G2QV58_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV58-1" }, "locus": { "chromosome": "3", "start_pos": 116522387, "end_pos": 116521731, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073626.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073626.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068020.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 219, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV58" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 171, "end_pos": 173 }, { "start_pos": 2, "end_pos": 4 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV78-1", "uniprot_ac": "A0A5G2QV78", "uniprot_id": "A0A5G2QV78_PIG", "mass": { "chemical_mass": 33671.0, "monoisotopic_mass": 33671.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QV78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV78", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV78", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049530", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049530", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QV78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV78-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQQKTKRQLSEWEKIVSNDATHKGLISRIYKQLIQLNSKKTNHPMEKWAKDLNRHFSKEDIQIASKHMKKCSTSLVIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHSWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFMAALFTIARTWKQPKCPSTDDWIWKKWYIYTMEYYSAIKKNDIMPFAATWMELENHILSEMSQKDKDKYHMISLITGI", "length": 283, "header": "tr|A0A5G2QV78-1|A0A5G2QV78_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV78-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV78-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78/entry", "sequence": { "sequence": "MNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETQQKTKRQLSEWEKIVSNDATHKGLISRIYKQLIQLNSKKTNHPMEKWAKDLNRHFSKEDIQIASKHMKKCSTSLVIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHSWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFMAALFTIARTWKQPKCPSTDDWIWKKWYIYTMEYYSAIKKNDIMPFAATWMELENHILSEMSQKDKDKYHMISLITGI", "length": 283, "header": "tr|A0A5G2QV78-1|A0A5G2QV78_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV78-1" }, "locus": { "chromosome": "13", "start_pos": 100813085, "end_pos": 100812237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067251.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067251.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068748.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068748.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV78", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV78-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 283, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV78-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV78" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV82-1", "uniprot_ac": "A0A5G2QV82", "uniprot_id": "A0A5G2QV82_PIG", "mass": { "chemical_mass": 19957.0, "monoisotopic_mass": 19957.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MAGE domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QV82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV82", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041318", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041318", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF81", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF81", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QV82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSVVLGDAQDRFPDVLRRASECMLLVFGLDVKEVDPGEHTYALVPILGLTWDGVLSGHELSLPKTGLLVIVLGVILLQGDRAPEEVVWGALGSLGLCVGSEHCIYGEPRALLTQACVQEGYLEYRQVPHSDPARYEFLWGPRAHAETSRLQVLEHLFGVRGRGSRSCPSPAEEAVSEEEEGP", "length": 183, "header": "tr|A0A5G2QV82-1|A0A5G2QV82_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV82-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV82-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82/entry", "sequence": { "sequence": "MLSVVLGDAQDRFPDVLRRASECMLLVFGLDVKEVDPGEHTYALVPILGLTWDGVLSGHELSLPKTGLLVIVLGVILLQGDRAPEEVVWGALGSLGLCVGSEHCIYGEPRALLTQACVQEGYLEYRQVPHSDPARYEFLWGPRAHAETSRLQVLEHLFGVRGRGSRSCPSPAEEAVSEEEEGP", "length": 183, "header": "tr|A0A5G2QV82-1|A0A5G2QV82_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV82-1" }, "locus": { "chromosome": "X", "start_pos": 121756022, "end_pos": 121755474, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082940.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082940.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068753.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068753.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV82", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 183, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV82" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV82" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 175, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV97-1", "uniprot_ac": "A0A5G2QV97", "uniprot_id": "A0A5G2QV97_PIG", "mass": { "chemical_mass": 10146.0, "monoisotopic_mass": 10146.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Immunoglobulin V-set domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QV97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV97", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV97", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042643", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042643", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19339:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19339:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLKFSAWVLWIQLAWESTQQLEQHPPFLSIQEGENSTMYCNSSSIFTNFQWTLNFDLDNYIPSFRKIITFHILSYNQGLYIAQF", "length": 85, "header": "tr|A0A5G2QV97-1|A0A5G2QV97_PIG Isoform 1 of Immunoglobulin V-set domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV97-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV97-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97/entry", "sequence": { "sequence": "MLLKFSAWVLWIQLAWESTQQLEQHPPFLSIQEGENSTMYCNSSSIFTNFQWTLNFDLDNYIPSFRKIITFHILSYNQGLYIAQF", "length": 85, "header": "tr|A0A5G2QV97-1|A0A5G2QV97_PIG Isoform 1 of Immunoglobulin V-set domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV97-1" }, "locus": { "chromosome": "7", "start_pos": 76879429, "end_pos": 76877109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087312.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087312.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062097.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062097.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "T cell receptor complex", "id": "GO:0042101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042101", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV97", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 85, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV97" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 }, { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV99-1", "uniprot_ac": "A0A5G2QV99", "uniprot_id": "A0A5G2QV99_PIG", "mass": { "chemical_mass": 12160.0, "monoisotopic_mass": 12160.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QV99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99", "locus": {} } ], "crossref": [ { "id": "A0A5G2QV99", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV99", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047378", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047378", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QV99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVLICISPVIRDVEHFFMCLLAICISSLEKCLFRSFAHFFIGLLAFLLLSCISCLYVLEIKPLSVASFETIFSHSVSCLFVFFLVSFAVQKLVRLIRYSIKIVLGK", "length": 107, "header": "tr|A0A5G2QV99-1|A0A5G2QV99_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV99-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV99-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99/entry", "sequence": { "sequence": "MVVLICISPVIRDVEHFFMCLLAICISSLEKCLFRSFAHFFIGLLAFLLLSCISCLYVLEIKPLSVASFETIFSHSVSCLFVFFLVSFAVQKLVRLIRYSIKIVLGK", "length": 107, "header": "tr|A0A5G2QV99-1|A0A5G2QV99_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QV99-1" }, "locus": { "chromosome": "7", "start_pos": 62976496, "end_pos": 62976176, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083010.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083010.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068055.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068055.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV99", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV99-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV99-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV99" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVC0-1", "uniprot_ac": "A0A5G2QVC0", "uniprot_id": "A0A5G2QVC0_PIG", "mass": { "chemical_mass": 71472.0, "monoisotopic_mass": 71472.0 }, "refseq": { "ac": "XP_020941953", "name": "serine/arginine repetitive matrix protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941953" }, "gene_names": [ { "name": "SRRM3", "type": "recommended", "evidence": [ { "id": "A0A5G2QVC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ] }, { "name": "SRRM3", "type": "synonym", "evidence": [ { "id": "XP_020941953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941953" } ] } ], "protein_names": [ { "name": "Serine/arginine repetitive matrix 3", "type": "synonym", "evidence": [ { "id": "A0A5G2QVC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0/entry#names_and_taxonomy" } ] }, { "name": "serine/arginine repetitive matrix protein 3", "type": "synonym", "evidence": [ { "id": "XP_020941953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941953" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRRM3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0", "locus": { "chromosome": "3", "start_pos": 10046538, "end_pos": 10102124, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032250", "url": "https://www.ensembl.org/id/ENSSSCG00000032250" } ] } } ], "crossref": [ { "id": "A0A5G2QVC0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032250", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032250", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21376", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102159887", "url": "https://www.ncbi.nlm.nih.gov/gene/102159887", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102159887", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159887", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QVC0", "url": "https://www.orthodb.org/?gene=A0A5G2QVC0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34755", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34755", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34755:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34755:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08312", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08312", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15230", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15230", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941953", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941953", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASTVNNGAATMPSPPDAANGFPQPGASSGAWPRAEEELRTAEPGLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEETRQKVRTFRQMLMEKEGMLAREDRPGGHVVVETPRLIEGADPGLEYAPFDEDDGPVDCDCPAACYRGHRGYRAKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLDSECSCGSSSPLRKKKKSVKKHRRDRSDSGSRRKRRHRSRSPKSKRKEKNKERKRLHAESPGRRAHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDDGRKTGSQRSSGSRSPTPSGGSGWGSPQQNGGSRQRSGAHGGRPGSAHSPLDKPSSPSPRARDQAEAGAATPPARGKESPSPRSAPSSQGRGGRAAGGAARRRRRRRRRRRRRSRSSASAPRRRGRRRARPAPPRGSSRSLSRARSSSDSGGGPPGPGPEPGSERGHGGHGKRAKERPPRARAASTSPSPGAHGRHGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRARSPSRSPSPKKALGRDKDGEGRARHAEAEAARARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSSRSPSRSPSPGHSHGSYSSRSRTRSRTRSPSRTPSPSYHSRSSSESGGF", "length": 652, "header": "tr|A0A5G2QVC0-1|A0A5G2QVC0_PIG Isoform 1 of Serine/arginine repetitive matrix 3 OS=Sus scrofa OX=9823 GN=SRRM3 PE=4 SV=2 CANONICAL=A0A5G2QVC0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0/entry", "sequence": { "sequence": "MASTVNNGAATMPSPPDAANGFPQPGASSGAWPRAEEELRTAEPGLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEETRQKVRTFRQMLMEKEGMLAREDRPGGHVVVETPRLIEGADPGLEYAPFDEDDGPVDCDCPAACYRGHRGYRAKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLDSECSCGSSSPLRKKKKSVKKHRRDRSDSGSRRKRRHRSRSPKSKRKEKNKERKRLHAESPGRRAHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDDGRKTGSQRSSGSRSPTPSGGSGWGSPQQNGGSRQRSGAHGGRPGSAHSPLDKPSSPSPRARDQAEAGAATPPARGKESPSPRSAPSSQGRGGRAAGGAARRRRRRRRRRRRRSRSSASAPRRRGRRRARPAPPRGSSRSLSRARSSSDSGGGPPGPGPEPGSERGHGGHGKRAKERPPRARAASTSPSPGAHGRHGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRARSPSRSPSPKKALGRDKDGEGRARHAEAEAARARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSSRSPSRSPSPGHSHGSYSSRSRTRSRTRSPSRTPSPSYHSRSSSESGGF", "length": 652, "header": "tr|A0A5G2QVC0-1|A0A5G2QVC0_PIG Isoform 1 of Serine/arginine repetitive matrix 3 OS=Sus scrofa OX=9823 GN=SRRM3 PE=4 SV=2 CANONICAL=A0A5G2QVC0-1" }, "locus": { "chromosome": "3", "start_pos": 10082579, "end_pos": 10047709, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087794.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087794.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068793.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068793.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102159887", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159887", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of insulin secretion", "id": "GO:0046676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "pmid": "" }, { "name": "negative regulation of glucagon secretion", "id": "GO:0070093", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070093", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 652, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVC0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC0" }, { "id": "SM01115", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CWF21", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 100, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 301 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVE0-1", "uniprot_ac": "A0A5G2QVE0", "uniprot_id": "A0A5G2QVE0_PIG", "mass": { "chemical_mass": 23466.0, "monoisotopic_mass": 23466.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QVE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041159", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041159", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DRLVEITDAEQKREKRLKTNEENLRELWDNVKCTNIRIIGVPEGQEREKRTEKIFQEIIAENFPDIGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQITYKGTPIRLLADFSAETLRARREWHDILNVMKGKNLQPRLLYPARLSFGFEGEIITFTDKQKLREFSNTKPALQQILRELL", "length": 198, "header": "tr|A0A5G2QVE0-1|A0A5G2QVE0_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QVE0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0/entry", "sequence": { "sequence": "DRLVEITDAEQKREKRLKTNEENLRELWDNVKCTNIRIIGVPEGQEREKRTEKIFQEIIAENFPDIGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKEKILKAAREKKQITYKGTPIRLLADFSAETLRARREWHDILNVMKGKNLQPRLLYPARLSFGFEGEIITFTDKQKLREFSNTKPALQQILRELL", "length": 198, "header": "tr|A0A5G2QVE0-1|A0A5G2QVE0_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QVE0-1" }, "locus": { "chromosome": "8", "start_pos": 108475231, "end_pos": 108474638, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088770.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088770.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068813.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068813.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 198, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVE0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 129, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QVE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE0" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 196, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVE1-1", "uniprot_ac": "A0A5G2QVE1", "uniprot_id": "A0A5G2QVE1_PIG", "mass": { "chemical_mass": 16167.0, "monoisotopic_mass": 16167.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100739218", "type": "recommended", "evidence": [ { "id": "A0A5G2QVE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" } ] } ], "protein_names": [ { "name": "Kazal-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QVE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100739218", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVE1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVE1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038182", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038182", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YSAICTM", "url": "https://omabrowser.org/oma/group/YSAICTM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47729", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47729", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47729:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47729:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00050", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00050", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1T2P9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T2P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2P9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T3C9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T3C9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T3C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T3C9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T428", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T428", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T428-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T428-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KVEEASTLNHPYENEGRAKGRYLLLLFRVLFLSQLQVDCTKYGGKGASVACTREWKPICGIDQKTYSSECIFCFLSQERGLELRKLHDGECRQVECTQYSEICTMEYLPHCGSDGVVYGNKCSFCNAAVKSRGTLFFVKYGLC", "length": 143, "header": "tr|A0A5G2QVE1-1|A0A5G2QVE1_PIG Isoform 1 of Kazal-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100739218 PE=1 SV=1 CANONICAL=A0A5G2QVE1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T2P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2P9/entry", "sequence": { "sequence": "AKKYPLLEIGVEVDCTKYGGKGASVACTREWKPICGIDQKTYSSECIFCFLSQERGLELRKLHDGECRQVECTQYSEICTMEYLPHCGSDGVVYGNKCSFCNAAVKSRGTLFFVKYGLC", "length": 119, "header": "tr|A0A4X1T2P9-1|A0A4X1T2P9_PIG Computationally mapped isoform of Kazal-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100739218 PE=1 SV=1 CANONICAL=A0A5G2QVE1-1" }, "locus": { "chromosome": "2", "start_pos": 149406348, "end_pos": 149401414, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038422.1", "url": "https://www.ensembl.org/id/ENSSSCT00000038422.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034312.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034312.1" } ] } }, { "isoform_ac": "A0A4X1T3C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T3C9/entry", "sequence": { "sequence": "MKSITAFALLALAATTWAVSPPEIGVEVDCTKYGGKGASVACTREWKPICGIDQKTYSSECIFCFLSQERGLELRKLHDGECRQVECTQYSEICTMEYLPHCGSDGVVYGNKCSFCNAAVKSRGTLFFVKYGLC", "length": 134, "header": "tr|A0A4X1T3C9-1|A0A4X1T3C9_PIG Computationally mapped isoform of Kazal-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100739218 PE=1 SV=1 CANONICAL=A0A5G2QVE1-1" }, "locus": { "chromosome": "2", "start_pos": 149406348, "end_pos": 149401010, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049178.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049178.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047566.1" } ] } }, { "isoform_ac": "A0A4X1T428-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T428/entry", "sequence": { "sequence": "AKKYPLLGLVDCTKYGGKGASVACTREWKPICGIDQKTYSSECIFCFLSQERGLELRKLHDGECRQVECTQYSEICTMEYLPHCGSDGVVYGNKCSFCNAAVKSRGTLFFVKYGLC", "length": 116, "header": "tr|A0A4X1T428-1|A0A4X1T428_PIG Computationally mapped isoform of Kazal-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100739218 PE=1 SV=1 CANONICAL=A0A5G2QVE1-1" }, "locus": { "chromosome": "2", "start_pos": 149406348, "end_pos": 149401414, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084179.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084179.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073346.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073346.1" } ] } }, { "isoform_ac": "A0A5G2QVE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1/entry", "sequence": { "sequence": "KVEEASTLNHPYENEGRAKGRYLLLLFRVLFLSQLQVDCTKYGGKGASVACTREWKPICGIDQKTYSSECIFCFLSQERGLELRKLHDGECRQVECTQYSEICTMEYLPHCGSDGVVYGNKCSFCNAAVKSRGTLFFVKYGLC", "length": 143, "header": "tr|A0A5G2QVE1-1|A0A5G2QVE1_PIG Isoform 1 of Kazal-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100739218 PE=1 SV=1 CANONICAL=A0A5G2QVE1-1" }, "locus": { "chromosome": "2", "start_pos": 149406348, "end_pos": 149402000, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068655.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068655.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062147.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062147.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M1V3-1", "protein_name": "Kazal-like domain-containing protein", "gene_name": "LOC100296105", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNSITTFAILTLAAMTWAVTPPVSSGDQEIGIEVNCTKYNIKGIGIACTKIWSPICGIDMKTYSNECMYCFLNRDKGSQLRKLHNNECREVECTTYSEICTMEYLPHCGSDGIVYGNRCVFCNAVVESRGTLYFVKYGPCSESP", "length": 144 }, "evidence": [ { "id": "A0A5G2QVE1", "url": "https://omabrowser.org/oma/group/A0A5G2QVE1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVE1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 143, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVE1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVE1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE1" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 93, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVF2-1", "uniprot_ac": "A0A5G2QVF2", "uniprot_id": "A0A5G2QVF2_PIG", "mass": { "chemical_mass": 16733.0, "monoisotopic_mass": 16733.0 }, "refseq": {}, "gene_names": [ { "name": "M1AP", "type": "recommended", "evidence": [ { "id": "A0A5G2QVF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2" } ] } ], "protein_names": [ { "name": "Meiosis 1 associated protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "M1AP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVF2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVF2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008263", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008263", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR033587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28642", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28642", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28642:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28642:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QVF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNW0", "url": "https://www.uniprot.org/uniprotkb/F1SNW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SNW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIVPSRSPTLLVKAVATRELMLPSPFPLLPEDMPDASLKTVEMMLDDLELDSIYNPLQVWSHLYSHLSSNFAKPQGRLQPSWESWALRKPPRKAGQLQTSRVRATVAPLPVTPAPGRAPRMPVARKISPEVFFQPSLEEEDKEEWPSGP", "length": 149, "header": "tr|A0A5G2QVF2-1|A0A5G2QVF2_PIG Isoform 1 of Meiosis 1 associated protein OS=Sus scrofa OX=9823 GN=M1AP PE=4 SV=2 CANONICAL=A0A5G2QVF2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2/entry", "sequence": { "sequence": "MIVPSRSPTLLVKAVATRELMLPSPFPLLPEDMPDASLKTVEMMLDDLELDSIYNPLQVWSHLYSHLSSNFAKPQGRLQPSWESWALRKPPRKAGQLQTSRVRATVAPLPVTPAPGRAPRMPVARKISPEVFFQPSLEEEDKEEWPSGP", "length": 149, "header": "tr|A0A5G2QVF2-1|A0A5G2QVF2_PIG Isoform 1 of Meiosis 1 associated protein OS=Sus scrofa OX=9823 GN=M1AP PE=4 SV=2 CANONICAL=A0A5G2QVF2-1" }, "locus": { "chromosome": "3", "start_pos": 68493557, "end_pos": 68491073, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070906.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070906.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068828.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068828.2" } ] } }, { "isoform_ac": "F1SNW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SNW0/entry", "sequence": { "sequence": "MIVPSRSPTLLVKAVATRELMLPSPFPLLPEDMPDASLKTVEMMLDDLELDSIYNPLQVWSHLYSHLSSNFAKPQGRLQPSWESWALRKAGQLQTSRVRATVAPLPVTPAPGRAPRMPVARKISPEVFFQPSLEEEDKEEWPSGP", "length": 145, "header": "tr|F1SNW0-1|F1SNW0_PIG Computationally mapped isoform of Meiosis 1 associated protein OS=Sus scrofa OX=9823 GN=M1AP PE=4 SV=4 CANONICAL=A0A5G2QVF2-1" }, "locus": { "chromosome": "3", "start_pos": 68493557, "end_pos": 68491073, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009049.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009049.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008821.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008821.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 112, "start_aa": "Thr", "end_pos": 112, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr112", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2" } ], "pmid": "" }, { "name": "meiosis I", "id": "GO:0007127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007127", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVF2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 149, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVF2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVF2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 112 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVG9-1", "uniprot_ac": "A0A5G2QVG9", "uniprot_id": "A0A5G2QVG9_PIG", "mass": { "chemical_mass": 8721.0, "monoisotopic_mass": 8721.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QVG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILAGVRWYLIVVLMCISLIMSDAEHLFMCFLAICMSSLENCLFRSSAHFWMGLFVFLVWSCSIGDKSYLINIL", "length": 76, "header": "tr|A0A5G2QVG9-1|A0A5G2QVG9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVG9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9/entry", "sequence": { "sequence": "MMAILAGVRWYLIVVLMCISLIMSDAEHLFMCFLAICMSSLENCLFRSSAHFWMGLFVFLVWSCSIGDKSYLINIL", "length": 76, "header": "tr|A0A5G2QVG9-1|A0A5G2QVG9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVG9-1" }, "locus": { "chromosome": "10", "start_pos": 34283739, "end_pos": 34283434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090360.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090360.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068968.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068968.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 76, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVG9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVH8-1", "uniprot_ac": "A0A5G2QVH8", "uniprot_id": "A0A5G2QVH8_PIG", "mass": { "chemical_mass": 20546.0, "monoisotopic_mass": 20546.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVH8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVH8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046437", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046437", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AAGPAARACGSPGCRGSPGCRGSPGLRGSPRCRGSPRCRGSPGLRGSPGFRGSPGLRGSPGLRGSPRCRGSPRCRGSPGLRGSPRCRGSPRCRGSPGLRGSPGFRGSPRCRGSPRCRGSPGLRGSPGLRGSPRSRGSPGLRGSPRCRGSPGRRGSPGLRGSPRCRGSPGLRGSPGLRGSPGLRGSPGLRGSPRCRRTESGPGTCE", "length": 205, "header": "tr|A0A5G2QVH8-1|A0A5G2QVH8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVH8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8/entry", "sequence": { "sequence": "AAGPAARACGSPGCRGSPGCRGSPGLRGSPRCRGSPRCRGSPGLRGSPGFRGSPGLRGSPGLRGSPRCRGSPRCRGSPGLRGSPRCRGSPRCRGSPGLRGSPGFRGSPRCRGSPRCRGSPGLRGSPGLRGSPRSRGSPGLRGSPRCRGSPGRRGSPGLRGSPRCRGSPGLRGSPGLRGSPGLRGSPGLRGSPRCRRTESGPGTCE", "length": 205, "header": "tr|A0A5G2QVH8-1|A0A5G2QVH8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVH8-1" }, "locus": { "chromosome": "11", "start_pos": 77509436, "end_pos": 77507766, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079075.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079075.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062187.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062187.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVH8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 205, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVH8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVH8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVI9-1", "uniprot_ac": "A0A5G2QVI9", "uniprot_id": "A0A5G2QVI9_PIG", "mass": { "chemical_mass": 42685.0, "monoisotopic_mass": 42685.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Nuclear envelope pore membrane protein POM 121-like", "type": "recommended", "evidence": [ { "id": "A0A5G2QVI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVI9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVI9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044074", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044074", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR043220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15566:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15566:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVI9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IGNYLSRSRPCAPSSALWGRDLLERPECLEPAYPALRVHLGAPTLHLTHRLSYEDLVASPRRRRYHRRFQARCLFMGIVPSVPRNGPQKPQLSACSSKMSCTSVILKMASAKGKLMLHLALKQTVICVLSSLFVHFPNLCVKKTLVKALEESSQPRAKKEKDLEALVESGKGLTEQKKGHSVLESQDEQRRGSNRGGNSQSAFRCLMVNGILSSFVPRPGPLKRGFCSKGSENTLTRKSQTYSLSSCSKQNTITSSYSSTRGFPQLQRSSAGSARLLGPASLHPHVPAEKANEESQQSSPSASAGPQRKIKHEKAADAPLGQKQNLNCSQPSDNCRPLKRKTPLLLPSRPNDPLILPPFPQLGYQVTAEDLDLEKRAAIQWINKVLEG", "length": 388, "header": "tr|A0A5G2QVI9-1|A0A5G2QVI9_PIG Isoform 1 of Nuclear envelope pore membrane protein POM 121-like OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QVI9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9/entry", "sequence": { "sequence": "IGNYLSRSRPCAPSSALWGRDLLERPECLEPAYPALRVHLGAPTLHLTHRLSYEDLVASPRRRRYHRRFQARCLFMGIVPSVPRNGPQKPQLSACSSKMSCTSVILKMASAKGKLMLHLALKQTVICVLSSLFVHFPNLCVKKTLVKALEESSQPRAKKEKDLEALVESGKGLTEQKKGHSVLESQDEQRRGSNRGGNSQSAFRCLMVNGILSSFVPRPGPLKRGFCSKGSENTLTRKSQTYSLSSCSKQNTITSSYSSTRGFPQLQRSSAGSARLLGPASLHPHVPAEKANEESQQSSPSASAGPQRKIKHEKAADAPLGQKQNLNCSQPSDNCRPLKRKTPLLLPSRPNDPLILPPFPQLGYQVTAEDLDLEKRAAIQWINKVLEG", "length": 388, "header": "tr|A0A5G2QVI9-1|A0A5G2QVI9_PIG Isoform 1 of Nuclear envelope pore membrane protein POM 121-like OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QVI9-1" }, "locus": { "chromosome": "2", "start_pos": 78027379, "end_pos": 78026183, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075740.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075740.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068145.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068145.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVI9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVI9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 388, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVI9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVI9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 327, "end_pos": 329 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVJ4-1", "uniprot_ac": "A0A5G2QVJ4", "uniprot_id": "A0A5G2QVJ4_PIG", "mass": { "chemical_mass": 31105.0, "monoisotopic_mass": 31105.0 }, "refseq": {}, "gene_names": [ { "name": "PEBP4", "type": "recommended", "evidence": [ { "id": "A0A5G2QVJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4" } ] } ], "protein_names": [ { "name": "Phosphatidylethanolamine binding protein 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QVJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEBP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4", "locus": { "chromosome": "14", "start_pos": 6966862, "end_pos": 7173347, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009631", "url": "https://www.ensembl.org/id/ENSSSCG00000009631" } ] } } ], "crossref": [ { "id": "A0A5G2QVJ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00866", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00866", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100302365", "url": "https://www.ncbi.nlm.nih.gov/gene/100302365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287BII9", "url": "https://www.orthodb.org/?gene=A0A287BII9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362:SF82", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BII9", "url": "https://www.uniprot.org/uniprotkb/A0A287BII9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BII9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BII9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFX4", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1P0V7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P0V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1P0V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P0V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWTMRLATAALFLGLTMAVPGDEEDSDPCVYEALSDSDAVLCKGLKVFYPELGNLGCMVVPECNNYRQKITSWTEPIVKFPGALDCCLSNPPQLLKTSSPCACGAGGAVHVSVPGAAPAPLPDTGARDMEKTNPSPAHNRHLIMGATYILVMVDPDAPSRSSPKAQFWRHWLVTDIKGTDIRKGKIQGQELSPYQPPSPPPKSGFHRYQFFVYLQQEKSISLLPKENKTRGSWKMDKFLSRFHLSEPEASTQFMTQYYQDSQKLQPGEGSSEPKDKPKRR", "length": 281, "header": "tr|A0A5G2QVJ4-1|A0A5G2QVJ4_PIG Isoform 1 of Phosphatidylethanolamine binding protein 4 OS=Sus scrofa OX=9823 GN=PEBP4 PE=1 SV=1 CANONICAL=A0A5G2QVJ4-1" }, "isoforms": [ { "isoform_ac": "A0A287BII9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BII9/entry", "sequence": { "sequence": "MPAPRKPCKVPMGWTMRLATAALFLGLTMAVPGDEEDSDPCVYEALSDSDAVLCKGLKVFYPELGNLGCMVVPECNNYRQKITSWTEPIVKFPGALDGATYILVMVDPDAPSRSSPKAQFWRHWLVTDIKGTDIRKGKIQGQELSPYQPPSPPPKSGFHRYQFFVYLQQEKSISLLPKENKTRGSWKMDKFLSRFHLSEPEASTQFMTQYYQDSQKLQPGEGSSEPKDKPKRR", "length": 233, "header": "tr|A0A287BII9-1|A0A287BII9_PIG Computationally mapped isoform of Phosphatidylethanolamine binding protein 4 OS=Sus scrofa OX=9823 GN=PEBP4 PE=1 SV=1 CANONICAL=A0A5G2QVJ4-1" }, "locus": { "chromosome": "14", "start_pos": 7173138, "end_pos": 6966998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039308.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039308.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056421.2" } ] } }, { "isoform_ac": "A0A288CFX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFX4/entry", "sequence": { "sequence": "MGWTMRLATAALFLGLTMAVPGDEEDSDPCVYEALSDSDAVLCKGLKVFYPELGNLGCMVVPECNNYRQKITSWTEPIVKFPGALDGTDIRKGKIQGQELSPYQPPSPPPKSGFHRYQFFVYLQQEKSISLLPKENKTRGSWKMDKFLSRFHLSEPEASTQFMTQYYQDSQKLQPGEGSSEPKDKPKRR", "length": 189, "header": "tr|A0A288CFX4-1|A0A288CFX4_PIG Computationally mapped isoform of Phosphatidylethanolamine binding protein 4 OS=Sus scrofa OX=9823 GN=PEBP4 PE=1 SV=1 CANONICAL=A0A5G2QVJ4-1" }, "locus": { "chromosome": "14", "start_pos": 7172635, "end_pos": 6966998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010558.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010558.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010282.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010282.3" } ] } }, { "isoform_ac": "A0A5G2QVJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4/entry", "sequence": { "sequence": "MGWTMRLATAALFLGLTMAVPGDEEDSDPCVYEALSDSDAVLCKGLKVFYPELGNLGCMVVPECNNYRQKITSWTEPIVKFPGALDCCLSNPPQLLKTSSPCACGAGGAVHVSVPGAAPAPLPDTGARDMEKTNPSPAHNRHLIMGATYILVMVDPDAPSRSSPKAQFWRHWLVTDIKGTDIRKGKIQGQELSPYQPPSPPPKSGFHRYQFFVYLQQEKSISLLPKENKTRGSWKMDKFLSRFHLSEPEASTQFMTQYYQDSQKLQPGEGSSEPKDKPKRR", "length": 281, "header": "tr|A0A5G2QVJ4-1|A0A5G2QVJ4_PIG Isoform 1 of Phosphatidylethanolamine binding protein 4 OS=Sus scrofa OX=9823 GN=PEBP4 PE=1 SV=1 CANONICAL=A0A5G2QVJ4-1" }, "locus": { "chromosome": "14", "start_pos": 7172635, "end_pos": 6966998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074755.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074755.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068155.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068155.1" } ] } }, { "isoform_ac": "A0A8D1P0V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1P0V7/entry", "sequence": { "sequence": "MPAPRKPCKVPMGWTMRLATAALFLGLTMAVPGDEEDSDPCVYEALSDSDAVLCKGLKVFYPELGNLGCMVVPECNNYRQKITSWTEPIVKFPGALDGATYILVMVDPDAPSRSSPKAQFWRHWLVTDIKGTDIRKGKIQGQELSRSWKMDKFLSRFHLSEPEASTQFMTQYYQDSQKLQPGEGSSEPKDKPKRR", "length": 195, "header": "tr|A0A8D1P0V7-1|A0A8D1P0V7_PIG Computationally mapped isoform of Phosphatidylethanolamine binding protein 4 OS=Sus scrofa OX=9823 GN=PEBP4 PE=1 SV=1 CANONICAL=A0A5G2QVJ4-1" }, "locus": { "chromosome": "14", "start_pos": 7173138, "end_pos": 6966998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049161.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049161.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035871.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035871.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 281, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVJ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVJ9-1", "uniprot_ac": "A0A5G2QVJ9", "uniprot_id": "A0A5G2QVJ9_PIG", "mass": { "chemical_mass": 14543.0, "monoisotopic_mass": 14543.0 }, "refseq": {}, "gene_names": [ { "name": "LY6L", "type": "recommended", "evidence": [ { "id": "A0A5G2QVJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" } ] } ], "protein_names": [ { "name": "Lymphocyte antigen 6 family member L", "type": "synonym", "evidence": [ { "id": "A0A5G2QVJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LY6L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9", "locus": { "chromosome": "4", "start_pos": 1296032, "end_pos": 1299886, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000053802", "url": "https://www.ensembl.org/id/ENSSSCG00000053802" } ] } } ], "crossref": [ { "id": "A0A5G2QVJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049988", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049988", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23551", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23551", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR32217", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32217", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32217:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32217:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRLLLVLWALLGSRACAGGAAEPGKNLSCYQCFKVKSLGSCRPAACASADEVCVSNTVIFVRRLGVGVLLSKRCAPRCPNSNMKSAWLSGSGMTRRVVRQCCSGSLCNGPPARQGRLWASSGGLLLPLGLSLLWATW", "length": 138, "header": "tr|A0A5G2QVJ9-1|A0A5G2QVJ9_PIG Isoform 1 of Lymphocyte antigen 6 family member L OS=Sus scrofa OX=9823 GN=LY6L PE=4 SV=1 CANONICAL=A0A5G2QVJ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9/entry", "sequence": { "sequence": "MGRLLLVLWALLGSRACAGGAAEPGKNLSCYQCFKVKSLGSCRPAACASADEVCVSNTVIFVRRLGVGVLLSKRCAPRCPNSNMKSAWLSGSGMTRRVVRQCCSGSLCNGPPARQGRLWASSGGLLLPLGLSLLWATW", "length": 138, "header": "tr|A0A5G2QVJ9-1|A0A5G2QVJ9_PIG Isoform 1 of Lymphocyte antigen 6 family member L OS=Sus scrofa OX=9823 GN=LY6L PE=4 SV=1 CANONICAL=A0A5G2QVJ9-1" }, "locus": { "chromosome": "4", "start_pos": 1299581, "end_pos": 1297036, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098537.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098537.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081158.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081158.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVJ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 138, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVJ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVJ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVJ9" }, { "id": "SM00134", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00134" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UPAR/Ly6", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 122, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVK6-1", "uniprot_ac": "A0A5G2QVK6", "uniprot_id": "A0A5G2QVK6_PIG", "mass": { "chemical_mass": 29639.0, "monoisotopic_mass": 29639.0 }, "refseq": {}, "gene_names": [ { "name": "AGTRAP", "type": "recommended", "evidence": [ { "id": "A0A5G2QVK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ] } ], "protein_names": [ { "name": "Angiotensin II receptor associated protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AGTRAP", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022401", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022401", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524812", "url": "https://www.ncbi.nlm.nih.gov/gene/100524812", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524812", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524812", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8D1R801", "url": "https://www.orthodb.org/?gene=A0A8D1R801", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FAG7", "url": "https://www.orthodb.org/?gene=A0A8W4FAG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16521", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16521", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16521:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16521:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06396", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06396", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1R801", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R801", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1R801-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R801-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAG7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VLPCFTEEEPGALASKNVAPGPEPRSLAPTSASYDPLCLGPLALPLPHSSDTRDTGWERAGQPLWAERFIKSPGAQPLFRPAQPRKGRLLRPVLGASSVFWLQTLSCRPPCLRSGHIHRPILHPTPSFFVPQAILLVHWLLTIWGCIVFPGPYAWANFTILALGVWAVAQRDSVDAISMFLGGLVVTIFLDIVHISIFYPRAGLSDTGRFSAGMAILSLLLKPFSCCLVYHMYRERGGFLVPSQERSAYQTIDSEVPADLESRPQGPQGY", "length": 270, "header": "tr|A0A5G2QVK6-1|A0A5G2QVK6_PIG Isoform 1 of Angiotensin II receptor associated protein OS=Sus scrofa OX=9823 GN=AGTRAP PE=4 SV=1 CANONICAL=A0A5G2QVK6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6/entry", "sequence": { "sequence": "VLPCFTEEEPGALASKNVAPGPEPRSLAPTSASYDPLCLGPLALPLPHSSDTRDTGWERAGQPLWAERFIKSPGAQPLFRPAQPRKGRLLRPVLGASSVFWLQTLSCRPPCLRSGHIHRPILHPTPSFFVPQAILLVHWLLTIWGCIVFPGPYAWANFTILALGVWAVAQRDSVDAISMFLGGLVVTIFLDIVHISIFYPRAGLSDTGRFSAGMAILSLLLKPFSCCLVYHMYRERGGFLVPSQERSAYQTIDSEVPADLESRPQGPQGY", "length": 270, "header": "tr|A0A5G2QVK6-1|A0A5G2QVK6_PIG Isoform 1 of Angiotensin II receptor associated protein OS=Sus scrofa OX=9823 GN=AGTRAP PE=4 SV=1 CANONICAL=A0A5G2QVK6-1" }, "locus": { "chromosome": "6", "start_pos": 71834505, "end_pos": 71829368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083793.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083793.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068993.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068993.1" } ] } }, { "isoform_ac": "A0A8D1R801-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R801/entry", "sequence": { "sequence": "MELPAVNLKAILLVHWLLTIWGCIVFPGPYAWANFTILALGVWAVAQRDSVDAISMFLGGLVVTIFLDIVHISIFYPRAGLSDTGRFSAGMAILSLLLKPFSCCLVYHMYRERGGFLVPSQERSAYQTIDSEVPADLESRPQGPQGY", "length": 147, "header": "tr|A0A8D1R801-1|A0A8D1R801_PIG Computationally mapped isoform of Angiotensin II receptor associated protein OS=Sus scrofa OX=9823 GN=AGTRAP PE=4 SV=1 CANONICAL=A0A5G2QVK6-1" }, "locus": { "chromosome": "6", "start_pos": 71834505, "end_pos": 71825426, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027174.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027174.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026820.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026820.2" } ] } }, { "isoform_ac": "A0A8W4FAG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAG7/entry", "sequence": { "sequence": "MELPAVNLKGLHCVPGPLCLGQLHHPGLGRVGRGAAGLRRRHKYVSGWPGGHHLPGHRPHQHLLPEGRPLGHGALQRGHGHPQPAPQAVLLLPRLPHVPGARGFPRAFAGAQRLPDHRLRGACRPGEQASRPPRILKPAKSRSQLDRPPGRRRRHHPLCTSGVICVLDGLPFLELTWERTQFPSSGVA", "length": 188, "header": "tr|A0A8W4FAG7-1|A0A8W4FAG7_PIG Computationally mapped isoform of Angiotensin II receptor associated protein OS=Sus scrofa OX=9823 GN=AGTRAP PE=4 SV=1 CANONICAL=A0A5G2QVK6-1" }, "locus": { "chromosome": "6", "start_pos": 71834663, "end_pos": 71825426, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100213.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100213.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076272.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524812", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524812", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of blood pressure", "id": "GO:0008217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008217", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "pmid": "" }, { "name": "angiotensin-activated signaling pathway", "id": "GO:0038166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVK6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 270, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVK6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVN6-1", "uniprot_ac": "A0A5G2QVN6", "uniprot_id": "A0A5G2QVN6_PIG", "mass": { "chemical_mass": 49051.0, "monoisotopic_mass": 49051.0 }, "refseq": {}, "gene_names": [ { "name": "CRLF3", "type": "recommended", "evidence": [ { "id": "A0A5G2QVN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ] } ], "protein_names": [ { "name": "Cytokine receptor-like factor 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QVN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6/entry#names_and_taxonomy" } ] }, { "name": "Cytokine receptor-like molecule 9", "type": "synonym", "evidence": [ { "id": "A0A5G2QVN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in the negative regulation of cell cycle progression.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6#function" }, { "database": "UniProtKB", "id": "ARBA00056593", "url": "https://www.uniprot.org/uniprotkb/ARBA00056593#function" }, { "database": "UniProtKB", "id": "F1RKV7", "url": "https://www.uniprot.org/uniprotkb/F1RKV7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRLF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6", "locus": { "chromosome": "12", "start_pos": 42976348, "end_pos": 42933445, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017743", "url": "https://www.ensembl.org/id/ENSSSCG00000017743" } ] } } ], "crossref": [ { "id": "A0A5G2QVN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017743", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017743", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525951", "url": "https://www.ncbi.nlm.nih.gov/gene/100525951", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059495", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059495", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HEWTPGF", "url": "https://omabrowser.org/oma/group/HEWTPGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RKV7", "url": "https://www.orthodb.org/?gene=F1RKV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF27984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKV7", "url": "https://www.uniprot.org/uniprotkb/F1RKV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLEPELLLQEARENVEAAQSYRRELGHRLKGLQEARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPWKVLVF", "length": 437, "header": "tr|A0A5G2QVN6-1|A0A5G2QVN6_PIG Isoform 1 of Cytokine receptor-like factor 3 OS=Sus scrofa OX=9823 GN=CRLF3 PE=1 SV=1 CANONICAL=A0A5G2QVN6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6/entry", "sequence": { "sequence": "MDLEPELLLQEARENVEAAQSYRRELGHRLKGLQEARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPWKVLVF", "length": 437, "header": "tr|A0A5G2QVN6-1|A0A5G2QVN6_PIG Isoform 1 of Cytokine receptor-like factor 3 OS=Sus scrofa OX=9823 GN=CRLF3 PE=1 SV=1 CANONICAL=A0A5G2QVN6-1" }, "locus": { "chromosome": "12", "start_pos": 42975147, "end_pos": 42933526, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090486.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090486.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062239.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062239.1" } ] } }, { "isoform_ac": "F1RKV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKV7/entry", "sequence": { "sequence": "MDLEPELLLQEARENVEAAQSYRRELGHRLKGLQEARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGGKCWCSRFSDDWFRFAGVL", "length": 451, "header": "tr|F1RKV7-1|F1RKV7_PIG Computationally mapped isoform of Cytokine receptor-like factor 3 OS=Sus scrofa OX=9823 GN=CRLF3 PE=1 SV=4 CANONICAL=A0A5G2QVN6-1" }, "locus": { "chromosome": "12", "start_pos": 42975187, "end_pos": 42933526, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019311.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019311.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018798.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018798.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AEZ7-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "Crlf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RVCPPHTPTLHPHTPPPPPASVNQAAAGAGRGGQSRAGRRFRCARPLGVARGSRAQSGIRRAARPDEGRDGAGARGAAAGSPGERGGGAELPAGARPAAAGAAGGAEIKESASQTRDVLKQHFSDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTADDLVREGETAILGGIEEQNDKLWNFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGAVASRPPVQIEELVEKPGGIVVRWCKVDDDFTAQDYRLQFRKCPANPFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTTGFEGYSLSSRRNIALRNDAESAGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQNGYESLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGPCNNNEGGNVKLRVTISSSNREVVFDWLLEQSCGSLYFGCSFFYPGWKVLVF", "length": 506 }, "evidence": [ { "id": "A0A5G2QVN6", "url": "https://omabrowser.org/oma/group/A0A5G2QVN6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1ADY2-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "CRLF3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWGPSGGPPAAAAAHGGRDRGAAPAAGGSGEHRGGAELPAGAAAAVAGAAPGAATESATLTRDVLEQHFNDLKGTLKKLLDERLMSLLQEVDTIEQESIKPLDECQKLIEHGVSTADDLLREGESAICGDVEQHNEKLCSFTKKALHIQLDSLPEVPSLVDVPCLSAQLDDCLLTILRNEIFRHGTVASHPPVQLEEFVEKPGGILVRWCKVDDDFVPQDYRLQYRKSTANHFEDVYVGSETEFMVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQIGRTTLVPHEWTAGLEGYSLSSRRNIALRNDSQSCGVLYSKAPTYFCGQTLTFRIETVGQPDRRDSLGVCVEQQNGYDSLQRDKAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDMEVVQLGPPSTEGGNFKLRVTISSNNREVVFDWVLDQCCVSLYFGCSFSYPGWKVLVF", "length": 451 }, "evidence": [ { "id": "A0A5G2QVN6", "url": "https://omabrowser.org/oma/group/A0A5G2QVN6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q568M3-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "crlf3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSIEAEALLQEAKESIEAAQNYRSELQQRLHGLSQARKQVRGSASQTRKALQRHFQELQTAVSRLLIDRLNGLLQEVDNIELDSVSPLDDCQKLIEHGVSTADELLREGEAAIRCSINETEDKLGSFTKKALQIQLDSLPEVPSLVDVPCLSAQLDDSLLHMFRAHVARHGSVASHPPVQIEELVERPGGVLVRWCKVDDDFSPQDYRLQFRRSNSSQYEDAYIGKDTEFLVLHLDPHVDHLFRVCARGEGRTEWSPWSIPQTGYTTLAPHEWCPGVDGYILSSRKNIAMRSDSSAPGHGGVLYSNSPTYFCGQTLTFKITAAGQTDKRDSLGVCADSRTDTDSLQRDQAVCISTNGAVFVNGKEMTNQLPAITVGSSVTFDMEVVSLFPVNNNNPSDGGNFKLRVTIGSGNREVVFDWLLDQVLDSLFFGCSFTHPGWKVLVF", "length": 444 }, "evidence": [ { "id": "A0A5G2QVN6", "url": "https://omabrowser.org/oma/group/A0A5G2QVN6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8IUI8-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "CRLF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGAMELEPELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQIGHSTLVPHEWTAGFEGYSLSSRRNIALRNDSESSGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGWKVLVF", "length": 442 }, "evidence": [ { "id": "A0A5G2QVN6", "url": "https://omabrowser.org/oma/group/A0A5G2QVN6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z2L7-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "Crlf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGAMEPEPEVLLQEARENVEAAQSYRRELGQRLQGLREAQRQIKESASQTRDVLKQHFSDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTADDLVREGEIAILGGIEEESDKLWNFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRWCKVDDDFTAQDYRLQFRKCTANHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWSPWSVPQTGHSTLVPHEWTTGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETVGQPDRRDSIGVCAERQNGYESLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTSNSHEGGNAKLRVTISSNNREVVFDWLLEQACGPLYFGCSFFYPGWKVLVF", "length": 442 }, "evidence": [ { "id": "A0A5G2QVN6", "url": "https://omabrowser.org/oma/group/A0A5G2QVN6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "positive regulation of receptor signaling pathway via JAK-STAT", "id": "GO:0046427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046427", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" }, { "name": "negative regulation of G1/S transition of mitotic cell cycle", "id": "GO:2000134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000134", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVN6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 437, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVN6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVN6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN6" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 177, "end_pos": 270, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVN8-1", "uniprot_ac": "A0A5G2QVN8", "uniprot_id": "A0A5G2QVN8_PIG", "mass": { "chemical_mass": 14953.0, "monoisotopic_mass": 14953.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein eL33", "type": "recommended", "evidence": [ { "id": "A0A5G2QVN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L35a", "type": "synonym", "evidence": [ { "id": "A0A5G2QVN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Required for the proliferation and viability of hematopoietic cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8#function" }, { "database": "UniProtKB", "id": "ARBA00045649", "url": "https://www.uniprot.org/uniprotkb/ARBA00045649#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVN8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049578", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049578", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01247", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01247", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SVNSFSHLGACGGLLGTGLLKQQIILGGLWYKAIFAGFKQGLQNQRENTALLKIDDVYARDETEFYLGKRCAYMYKAKSNTVNPGRKSKKTRIFWGKVTHANDNSGMVRATFQSNLPAKATGHRIHVMLYPSRI", "length": 134, "header": "tr|A0A5G2QVN8-1|A0A5G2QVN8_PIG Isoform 1 of Large ribosomal subunit protein eL33 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QVN8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8/entry", "sequence": { "sequence": "SVNSFSHLGACGGLLGTGLLKQQIILGGLWYKAIFAGFKQGLQNQRENTALLKIDDVYARDETEFYLGKRCAYMYKAKSNTVNPGRKSKKTRIFWGKVTHANDNSGMVRATFQSNLPAKATGHRIHVMLYPSRI", "length": 134, "header": "tr|A0A5G2QVN8-1|A0A5G2QVN8_PIG Isoform 1 of Large ribosomal subunit protein eL33 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QVN8-1" }, "locus": { "chromosome": "4", "start_pos": 33737277, "end_pos": 33736876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082954.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082954.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068935.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068935.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ribosomal large subunit biogenesis", "id": "GO:0042273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042273", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "pmid": "" }, { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVN8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 134, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVN8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVN8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVP5-1", "uniprot_ac": "A0A5G2QVP5", "uniprot_id": "A0A5G2QVP5_PIG", "mass": { "chemical_mass": 15121.0, "monoisotopic_mass": 15121.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVP5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047980", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047980", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QVP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMQGHVSFLRKVLSRYMPKSGIAGSYGSSIYRFLRYLHTDFHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDFLMMAIWTGVKWCHMVVLICISLIIRDVEHFFMCLLPICISSLEKCLFRSFPTLQLGC", "length": 130, "header": "tr|A0A5G2QVP5-1|A0A5G2QVP5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVP5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5/entry", "sequence": { "sequence": "MNMQGHVSFLRKVLSRYMPKSGIAGSYGSSIYRFLRYLHTDFHSGCTSFHSHQQCRRVPFSPQPLQHLLFVDFLMMAIWTGVKWCHMVVLICISLIIRDVEHFFMCLLPICISSLEKCLFRSFPTLQLGC", "length": 130, "header": "tr|A0A5G2QVP5-1|A0A5G2QVP5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVP5-1" }, "locus": { "chromosome": "13", "start_pos": 9198024, "end_pos": 9197635, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068215.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068215.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 130, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVP5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVQ2-1", "uniprot_ac": "A0A5G2QVQ2", "uniprot_id": "A0A5G2QVQ2_PIG", "mass": { "chemical_mass": 18832.0, "monoisotopic_mass": 18832.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QVQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVQ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19367:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19367:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLSSLLWLFLASVFSGRDGSSMAQKVTQDQPTVSSQVGEEVTLNCRYEAPWNTNYLFWYKQPPSGEMTFLIHQDTSKTNAKDGRYSVNSRRGEKSLSLTISALQLKDSATYFCALRDLTVFEVIGKAEQKPQSSIRESPPATGPKLKCTPADPRQEGGVLWLLHLWSG", "length": 169, "header": "tr|A0A5G2QVQ2-1|A0A5G2QVQ2_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVQ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2/entry", "sequence": { "sequence": "MPLSSLLWLFLASVFSGRDGSSMAQKVTQDQPTVSSQVGEEVTLNCRYEAPWNTNYLFWYKQPPSGEMTFLIHQDTSKTNAKDGRYSVNSRRGEKSLSLTISALQLKDSATYFCALRDLTVFEVIGKAEQKPQSSIRESPPATGPKLKCTPADPRQEGGVLWLLHLWSG", "length": 169, "header": "tr|A0A5G2QVQ2-1|A0A5G2QVQ2_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QVQ2-1" }, "locus": { "chromosome": "7", "start_pos": 77236092, "end_pos": 77235389, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067777.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067777.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068950.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068950.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "T cell receptor complex", "id": "GO:0042101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042101", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "pmid": "" }, { "name": "immunoglobulin complex", "id": "GO:0019814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019814", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVQ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 169, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVQ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVQ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ2" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 137, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVR3-1", "uniprot_ac": "A0A5G2QVR3", "uniprot_id": "A0A5G2QVR3_PIG", "mass": { "chemical_mass": 47479.0, "monoisotopic_mass": 47479.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "exodeoxyribonuclease III", "type": "recommended", "evidence": [ { "id": "A0A5G2QVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3/entry#names_and_taxonomy" } ] }, { "name": "3.1.11.2", "type": "synonym", "evidence": [ { "id": "A0A5G2QVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVR3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050952", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050952", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22748", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22748", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22748:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22748:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKIFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYMQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNGMKLEINHGKSKEKKPTTWRLNNMLLKNQWVNEEIKKQIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLILHLNELEKEEQKSPNVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKPSHSNLEQDRDAHSHHCSSTSFWKSWPQQLDKQKKSKASI", "length": 408, "header": "tr|A0A5G2QVR3-1|A0A5G2QVR3_PIG Isoform 1 of exodeoxyribonuclease III OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QVR3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRMAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKIFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYMQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNGMKLEINHGKSKEKKPTTWRLNNMLLKNQWVNEEIKKQIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLILHLNELEKEEQKSPNVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKPSHSNLEQDRDAHSHHCSSTSFWKSWPQQLDKQKKSKASI", "length": 408, "header": "tr|A0A5G2QVR3-1|A0A5G2QVR3_PIG Isoform 1 of exodeoxyribonuclease III OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QVR3-1" }, "locus": { "chromosome": "13", "start_pos": 149577158, "end_pos": 149575098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074460.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074460.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068235.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068235.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" }, { "name": "base-excision repair", "id": "GO:0006284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006284", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" }, { "name": "DNA-(apurinic or apyrimidinic site) endonuclease activity", "id": "GO:0003906", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003906", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" }, { "name": "phosphoric diester hydrolase activity", "id": "GO:0008081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008081", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" }, { "name": "double-stranded DNA 3'-5' DNA exonuclease activity", "id": "GO:0008311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008311", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVR3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 332, "end_pos": 334, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVR3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVR3" }, { "id": "PF03372", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endonuclease/exonuclease/phosphatase", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 229, "start_aa": "Ile", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 332, "end_pos": 334 }, { "start_pos": 359, "end_pos": 361 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVU6-1", "uniprot_ac": "A0A5G2QVU6", "uniprot_id": "A0A5G2QVU6_PIG", "mass": { "chemical_mass": 42213.0, "monoisotopic_mass": 42213.0 }, "refseq": { "ac": "XP_001925791", "name": "uncharacterized protein C20orf96 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925791" }, "gene_names": [ { "name": "C17H20orf96", "type": "recommended", "evidence": [ { "id": "A0A5G2QVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6" } ] }, { "name": "C20orf96", "type": "recommended", "evidence": [ { "id": "A0A5G2QVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6" } ] }, { "name": "C17H20orf96", "type": "synonym", "evidence": [ { "id": "XP_001925791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925791" } ] }, { "name": "C20orf96", "type": "synonym", "evidence": [ { "id": "A0A5G2QVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6" } ] } ], "protein_names": [ { "name": "Chromosome 17 C20orf96 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C20orf96 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925791" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C17H20orf96", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007212", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007212", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154679", "url": "https://www.ncbi.nlm.nih.gov/gene/100154679", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154679", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154679", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNHEDFL", "url": "https://omabrowser.org/oma/group/CNHEDFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QVU6", "url": "https://www.orthodb.org/?gene=A0A5G2QVU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S7I7", "url": "https://www.orthodb.org/?gene=F1S7I7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28574:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28574:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QVU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7I7", "url": "https://www.uniprot.org/uniprotkb/F1S7I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7I7-1", "url": "https://www.uniprot.org/uniprotkb/F1S7I7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARVFPKPDHDGICSTVHQFQILDYVPWQRSKPKAKTSSLPPISQTTDTKKSKMKILTTVQPGVQARPTLWMTSQPRNPLELRRGKLDSGKTHNKIRLLRTMLRHRQASHQELCNHEDFLTQLNRELIKAIQDTEDSSALKVRVMLQQHDVFMTIISILEYSNKKRLQQMEHELQEWEEKEESKMHSLEQQVEQLNAKIEKVHEKVSFVSTYKDHEYPIKSVQVASLVRQLQQTKDSQQDELDDLGEMCRMVLASISSQIQKKKKALLGSLVLKIQHAHQETLLQKTLDSQAMLTYMDKVQKFMDQFEEEIPLLRAQMEQLQFQIWEPREIVFADVLLRRSKCTPDTDVILNIPVEELLPF", "length": 361, "header": "tr|A0A5G2QVU6-1|A0A5G2QVU6_PIG Isoform 1 of Chromosome 17 C20orf96 homolog OS=Sus scrofa OX=9823 GN=C17H20orf96 PE=4 SV=1 CANONICAL=A0A5G2QVU6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6/entry", "sequence": { "sequence": "MARVFPKPDHDGICSTVHQFQILDYVPWQRSKPKAKTSSLPPISQTTDTKKSKMKILTTVQPGVQARPTLWMTSQPRNPLELRRGKLDSGKTHNKIRLLRTMLRHRQASHQELCNHEDFLTQLNRELIKAIQDTEDSSALKVRVMLQQHDVFMTIISILEYSNKKRLQQMEHELQEWEEKEESKMHSLEQQVEQLNAKIEKVHEKVSFVSTYKDHEYPIKSVQVASLVRQLQQTKDSQQDELDDLGEMCRMVLASISSQIQKKKKALLGSLVLKIQHAHQETLLQKTLDSQAMLTYMDKVQKFMDQFEEEIPLLRAQMEQLQFQIWEPREIVFADVLLRRSKCTPDTDVILNIPVEELLPF", "length": 361, "header": "tr|A0A5G2QVU6-1|A0A5G2QVU6_PIG Isoform 1 of Chromosome 17 C20orf96 homolog OS=Sus scrofa OX=9823 GN=C17H20orf96 PE=4 SV=1 CANONICAL=A0A5G2QVU6-1" }, "locus": { "chromosome": "17", "start_pos": 34916421, "end_pos": 34892826, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068333.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068333.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062304.1" } ] } }, { "isoform_ac": "F1S7I7-1", "url": "https://www.uniprot.org/uniprotkb/F1S7I7/entry", "sequence": { "sequence": "MMEVLSRPHSFQTRPRWDLLHSSPVPDSGVQARPTLWMTSQPRNPLELRRGKLDSGKTHNKIRLLRTMLRHRQASHQELCNHEDFLTQLNRELIKAIQDTEDSSALKVRVMLQQHDVFMTIISILEYSNKKRLQQMEHELQEWEEKEESKMHSLEQQVEQLNAKIEKVHEKVSFVSTYKDHEYPIKSVQVASLVRQLQQTKDSQQDELDDLGEMCRMVLASISSQIQKKKKALLGSLVLKIQHAHQETLLQKTLDSQAMLTYMDKVQKFMDQFEEEIPLLRAQMEQLQFQIWEPREIVFADVLLRRSKCTPDTDVILNIPVEELLPF", "length": 327, "header": "tr|F1S7I7-1|F1S7I7_PIG Computationally mapped isoform of Chromosome 17 C20orf96 homolog OS=Sus scrofa OX=9823 GN=C20orf96 PE=4 SV=3 CANONICAL=A0A5G2QVU6-1" }, "locus": { "chromosome": "17", "start_pos": 34916421, "end_pos": 34893105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007892.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007892.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007681.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007681.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154679", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154679", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YP54-1", "protein_name": "Uncharacterized protein", "gene_name": "C20orf96", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDAKGPGPSAAAEAKRRVGSTWQKAAAERKLAAHELVLPPITDGAKKKGQKNKSAVFVSSKTTPLVLKASPQEKYRTYTERKSALKEAELAEMLEEIRVTTHLTKLKTKAIEELKQCSDHLAKTNCWLMKDIQHTDDSTAKQARDLLHQYEVYQMIEAMTQTVSQNQLDMARAELQEMEKTMEKNVGKLQQQLDEVTSKVQVLQDELSTLRAYTEVQYLNQAMQIVLLLSNIQNLKKQQQDEIEQTEKMGQAILEELEKKAQLEQEEILQKVVEEVLLHQDGLKQMVINNHVLRREIIRQKEIIKDLEEEISELKRSVQTLRQSARDPREMIFADVFLHRPKCTPDTEVVLRIPTEKTPLPRCPQRSDEEPTNAALPSPAALLPPGPARLL", "length": 391 }, "evidence": [ { "id": "A0A5G2QVU6", "url": "https://omabrowser.org/oma/group/A0A5G2QVU6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9T159-1", "protein_name": "Chromosome 13 C20orf96 homolog", "gene_name": "C13H20orf96", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGVFSRPNTLQTQPLWDRLHSPPVPGSGWQSKPTLWMTSQPRNPLELRRGKLDSGKTQATIRLMRTMLRNRRTSYQELCDHEEFLTNHCGELIKTIQDTEDSAALKVRMLLQQQDVYMTITDILEYSNKKKLHQMKCELQEWEEKEEAKIRNLEQQVEQLDAQIEKVREQVSFVSTYKDHEYPIKLVQVGNLVRQLQQVKDSQLDELDELSEMCRMVLASMSNQIQNKKKNLLRSLVVKIQRANQETLLQKTWNTRVILKYMDKFQEFIDRFEEEIPRLRAEMEQLEFQIWEPREIVFADVLLRRSKCTPDMDVVLNIPVEEPLPF", "length": 326 }, "evidence": [ { "id": "A0A5G2QVU6", "url": "https://omabrowser.org/oma/group/A0A5G2QVU6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0M1F2-1", "protein_name": "Similar to human chromosome 20 open reading frame 96", "gene_name": "C3h20orf96", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQKRINSRTQFAGHKLQVHMSSGAEKNLKPSTLPPLRQAKGHSKRKTKSVTKIQPVAQSQVSVDMTTATKTPRALRRRDQPHHGKVQAKVRLMKSMLRNQRTSLQELYSHEGYLSKLNQELIKTILETEDSTALSVREMLQQQNILGNIIDILEYSNKKRVQELRSEFQEWKEKEESKTNTLQWEVEQLNSEIRKANEEVNLLSTYMDHEYPIRLVQIANHVRLVQQAKDSQQDELDNLREMREKVLAFFSNIIQEKKRRILKSLVVKTQEPHENRLLLKTRDSRRLQRCVLWFEELIKQLKEEIPMLISEVEQMYAEIWNPREAVFKDVLLQRPKCTPDMAVELNIPTQELFPF", "length": 356 }, "evidence": [ { "id": "A0A5G2QVU6", "url": "https://omabrowser.org/oma/group/A0A5G2QVU6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NUD7-1", "protein_name": "Uncharacterized protein C20orf96", "gene_name": "C20orf96", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAHVLQKPKHSGTHSIVQEFQVPDYVPWQQSKQETKPSTLPPVQQANSLHTSKMKTLTRVQPVFHFKPTTVVTSCQPKNPRELHRRRKLDPGKMHAKIWLMKTSLRSGRAALRELRSRENFLSKLNRELIETIQEMENSTTLHVRALLQQQDTLATIIDILEYSNKKRLQQLKSELQEWEEKKKCKMSYLEQQAEQLNAKIEKTQEEVNFLSTYMDHEYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAETQRPYEEALLQKMWESQDFLKCMQRFREIIDQFEENMPVLRAEVEELQAQTREPREVIFEDVLLRRPKCTPDMDVILNIPVEEPLPF", "length": 363 }, "evidence": [ { "id": "A0A5G2QVU6", "url": "https://omabrowser.org/oma/group/A0A5G2QVU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 361, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVU6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVU9-1", "uniprot_ac": "A0A5G2QVU9", "uniprot_id": "A0A5G2QVU9_PIG", "mass": { "chemical_mass": 27867.0, "monoisotopic_mass": 27867.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QVU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QVU9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVU9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049712", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049712", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESEASPRLHQEAEPAACAAAAALPSVVGLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 267, "header": "tr|A0A5G2QVU9-1|A0A5G2QVU9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QVU9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9/entry", "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESEASPRLHQEAEPAACAAAAALPSVVGLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 267, "header": "tr|A0A5G2QVU9-1|A0A5G2QVU9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QVU9-1" }, "locus": { "chromosome": "13", "start_pos": 79880118, "end_pos": 79879165, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076593.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076593.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068996.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068996.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 99, "start_aa": "Thr", "end_pos": 99, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr99", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVU9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 267, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVU9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVU9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 99 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW00-1", "uniprot_ac": "A0A5G2QW00", "uniprot_id": "A0A5G2QW00_PIG", "mass": { "chemical_mass": 86442.0, "monoisotopic_mass": 86442.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QW00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QW00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00", "locus": {} } ], "crossref": [ { "id": "A0A5G2QW00", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041670", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041670", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QW00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPCDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QW00-1|A0A5G2QW00_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QW00-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QW00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00/entry", "sequence": { "sequence": "MNIDAKILNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKYCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPCDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 738, "header": "tr|A0A5G2QW00-1|A0A5G2QW00_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QW00-1" }, "locus": { "chromosome": "18", "start_pos": 191205, "end_pos": 188992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091164.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091164.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069124.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069124.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QW00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 738, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QW00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW00" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QW00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW00" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 238, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 531, "end_pos": 533 }, { "start_pos": 588, "end_pos": 590 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW39-1", "uniprot_ac": "A0A5G2QW39", "uniprot_id": "A0A5G2QW39_PIG", "mass": { "chemical_mass": 20717.0, "monoisotopic_mass": 20717.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC28A", "type": "recommended", "evidence": [ { "id": "A0A5G2QW39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 28A", "type": "synonym", "evidence": [ { "id": "A0A5G2QW39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW39", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC28A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39", "locus": { "chromosome": "1", "start_pos": 25647000, "end_pos": 25663273, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004148", "url": "https://www.ensembl.org/id/ENSSSCG00000004148" } ] } } ], "crossref": [ { "id": "A0A5G2QW39", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW39", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004148", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004148", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR025271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13400", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13400", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13400:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13400:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QW39", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW39-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDSNLDRLLSDLEELNSSMYPLLNINMKSLQIIIFGE", "length": 185, "header": "tr|A0A5G2QW39-1|A0A5G2QW39_PIG Isoform 1 of Coiled-coil domain containing 28A OS=Sus scrofa OX=9823 GN=CCDC28A PE=4 SV=1 CANONICAL=A0A5G2QW39-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QW39-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39/entry", "sequence": { "sequence": "MEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDSNLDRLLSDLEELNSSMYPLLNINMKSLQIIIFGE", "length": 185, "header": "tr|A0A5G2QW39-1|A0A5G2QW39_PIG Isoform 1 of Coiled-coil domain containing 28A OS=Sus scrofa OX=9823 GN=CCDC28A PE=4 SV=1 CANONICAL=A0A5G2QW39-1" }, "locus": { "chromosome": "1", "start_pos": 25660938, "end_pos": 25651583, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087117.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087117.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069164.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW39", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW39" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QW39-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 185, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QW39-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW39" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW47-1", "uniprot_ac": "A0A5G2QW47", "uniprot_id": "A0A5G2QW47_PIG", "mass": { "chemical_mass": 23812.0, "monoisotopic_mass": 23812.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QW47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47", "locus": {} } ], "crossref": [ { "id": "A0A5G2QW47", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW47", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043289", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043289", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QW47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSIFSFLRSLHTVFHSGCTNLPSHRQSRSVPFSPHPLQHLLFVDLLMMATLTSVRWYLIVVLIYISLIISDVEHLFMCLLAIHVSSLEKCLFSSFAHFSIELLVFLLLSCMSCLYILEIKSSSVASFATIFSHSVGCLFFFFFLWFPLLCKSCICDSDGYCLVPPGNSSRLCPGSNECLLPQEEQLKWRLPHLAPTFRRD", "length": 211, "header": "tr|A0A5G2QW47-1|A0A5G2QW47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QW47-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QW47-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47/entry", "sequence": { "sequence": "MPKSGIAGSYGSSIFSFLRSLHTVFHSGCTNLPSHRQSRSVPFSPHPLQHLLFVDLLMMATLTSVRWYLIVVLIYISLIISDVEHLFMCLLAIHVSSLEKCLFSSFAHFSIELLVFLLLSCMSCLYILEIKSSSVASFATIFSHSVGCLFFFFFLWFPLLCKSCICDSDGYCLVPPGNSSRLCPGSNECLLPQEEQLKWRLPHLAPTFRRD", "length": 211, "header": "tr|A0A5G2QW47-1|A0A5G2QW47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QW47-1" }, "locus": { "chromosome": "3", "start_pos": 26859169, "end_pos": 26858537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085104.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085104.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069174.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069174.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW47", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW47" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QW47-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 211, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QW47-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW47" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW54-1", "uniprot_ac": "A0A5G2QW54", "uniprot_id": "A0A5G2QW54_PIG", "mass": { "chemical_mass": 11602.0, "monoisotopic_mass": 11602.0 }, "refseq": {}, "gene_names": [ { "name": "LSM7", "type": "recommended", "evidence": [ { "id": "A0A5G2QW54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ] } ], "protein_names": [ { "name": "U6 snRNA-associated Sm-like protein LSm7", "type": "recommended", "evidence": [ { "id": "A0A5G2QW54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RF09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF09#function" }, { "database": "UniProtKB", "id": "ARBA00056431", "url": "https://www.uniprot.org/uniprotkb/ARBA00056431#function" }, { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54#function" }, { "database": "UniProtKB", "id": "F1S8H0", "url": "https://www.uniprot.org/uniprotkb/F1S8H0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LSM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54", "locus": { "chromosome": "2", "start_pos": 76252598, "end_pos": 76247058, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013463", "url": "https://www.ensembl.org/id/ENSSSCG00000013463" } ] } } ], "crossref": [ { "id": "A0A5G2QW54", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013463", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013463", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01729", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01729", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10553", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10553", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10553:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10553:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-430039", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-430039", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8H0", "url": "https://www.uniprot.org/uniprotkb/F1S8H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8H0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8H0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA", "length": 103, "header": "tr|A0A5G2QW54-1|A0A5G2QW54_PIG Isoform 1 of U6 snRNA-associated Sm-like protein LSm7 OS=Sus scrofa OX=9823 GN=LSM7 PE=1 SV=2 CANONICAL=A0A5G2QW54-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QW54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54/entry", "sequence": { "sequence": "MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA", "length": 103, "header": "tr|A0A5G2QW54-1|A0A5G2QW54_PIG Isoform 1 of U6 snRNA-associated Sm-like protein LSm7 OS=Sus scrofa OX=9823 GN=LSM7 PE=1 SV=2 CANONICAL=A0A5G2QW54-1" }, "locus": { "chromosome": "2", "start_pos": 76251692, "end_pos": 76247166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071368.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071368.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068380.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068380.2" } ] } }, { "isoform_ac": "A0A5G2RF09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF09/entry", "sequence": { "sequence": "MCRGQRPKGAARRRRQDGGERAARLAWLEGLAGQNLAALPPSRNVLSSQDKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA", "length": 150, "header": "tr|A0A5G2RF09-1|A0A5G2RF09_PIG Computationally mapped isoform of U6 snRNA-associated Sm-like protein LSm7 OS=Sus scrofa OX=9823 GN=LSM7 PE=1 SV=1 CANONICAL=A0A5G2QW54-1" }, "locus": { "chromosome": "2", "start_pos": 76251692, "end_pos": 76247117, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090383.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090383.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073302.1" } ] } }, { "isoform_ac": "F1S8H0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8H0/entry", "sequence": { "sequence": "MFPKKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA", "length": 102, "header": "tr|F1S8H0-1|F1S8H0_PIG Computationally mapped isoform of U6 snRNA-associated Sm-like protein LSm7 OS=Sus scrofa OX=9823 GN=LSM7 PE=1 SV=4 CANONICAL=A0A5G2QW54-1" }, "locus": { "chromosome": "2", "start_pos": 76251692, "end_pos": 76247058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014708.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014708.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014311.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014311.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-430039", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-430039", "resource": "Reactome", "description": "mRNA decay by 5' to 3' exoribonuclease" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process", "id": "GO:0000956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000956", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 11, "go_terms": [ { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "U2-type prespliceosome", "id": "GO:0071004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071004", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "U12-type spliceosomal complex", "id": "GO:0005689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005689", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "U6 snRNP", "id": "GO:0005688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005688", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "spliceosomal tri-snRNP complex", "id": "GO:0097526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097526", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "Lsm1-7-Pat1 complex", "id": "GO:1990726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990726", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "Lsm2-8 complex", "id": "GO:0120115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120115", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "U4/U6 x U5 tri-snRNP complex", "id": "GO:0046540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046540", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QW54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 103, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QW54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QW54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW54" }, { "id": "PS52002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sm", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 90, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW62-1", "uniprot_ac": "A0A5G2QW62", "uniprot_id": "A0A5G2QW62_PIG", "mass": { "chemical_mass": 16055.0, "monoisotopic_mass": 16055.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QW62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62", "locus": {} } ], "crossref": [ { "id": "A0A5G2QW62", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW62", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043987", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043987", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QW62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW62-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QFLSSSVFKPLIFKVLLICVVILTILIRLTQEHGISFHLFVLSSISFISILQFAEYRSVASLSRFRPKYFILFDAMINGIVSLIFLFYFPLLVYRNARDFWVLILHPATLLNSLMSSSSFLAASLGFSMYSIISSQIVTVL", "length": 141, "header": "tr|A0A5G2QW62-1|A0A5G2QW62_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QW62-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QW62-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62/entry", "sequence": { "sequence": "QFLSSSVFKPLIFKVLLICVVILTILIRLTQEHGISFHLFVLSSISFISILQFAEYRSVASLSRFRPKYFILFDAMINGIVSLIFLFYFPLLVYRNARDFWVLILHPATLLNSLMSSSSFLAASLGFSMYSIISSQIVTVL", "length": 141, "header": "tr|A0A5G2QW62-1|A0A5G2QW62_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QW62-1" }, "locus": { "chromosome": "7", "start_pos": 89482722, "end_pos": 89482300, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085849.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085849.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069189.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069189.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QW62-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 141, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QW62-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QW62" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QW73-1", "uniprot_ac": "A0A5G2QW73", "uniprot_id": "A0A5G2QW73_PIG", "mass": { "chemical_mass": 158241.0, "monoisotopic_mass": 158241.0 }, "refseq": {}, "gene_names": [ { "name": "COL16A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QW73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(XVI) chain", "type": "recommended", "evidence": [ { "id": "A0A5G2QW73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in mediating cell attachment and inducing integrin-mediated cellular reactions, such as cell spreading and alterations in cell morphology.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73#function" }, { "database": "UniProtKB", "id": "ARBA00057339", "url": "https://www.uniprot.org/uniprotkb/ARBA00057339#function" }, { "database": "UniProtKB", "id": "F1SV99", "url": "https://www.uniprot.org/uniprotkb/F1SV99#function" }, { "database": "UniProtKB", "id": "I3LHV9", "url": "https://www.uniprot.org/uniprotkb/I3LHV9#function" }, { "database": "UniProtKB", "id": "I3LNH0", "url": "https://www.uniprot.org/uniprotkb/I3LNH0#function" }, { "database": "UniProtKB", "id": "A0A286ZHY0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZHY0#function" }, { "database": "UniProtKB", "id": "A0A480VGP1", "url": "https://www.uniprot.org/uniprotkb/A0A480VGP1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL16A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73", "locus": { "chromosome": "6", "start_pos": 88177816, "end_pos": 88242747, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003603", "url": "https://www.ensembl.org/id/ENSSSCG00000003603" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003603", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003603", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737666", "url": "https://www.ncbi.nlm.nih.gov/gene/100737666", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF372", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF372", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZHY0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZHY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZHY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZHY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VGP1", "url": "https://www.uniprot.org/uniprotkb/A0A480VGP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VGP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VGP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV99", "url": "https://www.uniprot.org/uniprotkb/F1SV99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV99-1", "url": "https://www.uniprot.org/uniprotkb/F1SV99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHV9", "url": "https://www.uniprot.org/uniprotkb/I3LHV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHV9-1", "url": "https://www.uniprot.org/uniprotkb/I3LHV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNH0", "url": "https://www.uniprot.org/uniprotkb/I3LNH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LNH0-1", "url": "https://www.uniprot.org/uniprotkb/I3LNH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPARGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1612, "header": "tr|A0A5G2QW73-1|A0A5G2QW73_PIG Isoform 1 of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=1 CANONICAL=A0A5G2QW73-1" }, "isoforms": [ { "isoform_ac": "A0A286ZHY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZHY0/entry", "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPAREGLRAVGQKGDRGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1596, "header": "tr|A0A286ZHY0-1|A0A286ZHY0_PIG Computationally mapped isoform of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=2 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88230723, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041126.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041126.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031142.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031142.2" } ] } }, { "isoform_ac": "A0A480VGP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VGP1/entry", "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPAREGLRAVGQKGDRGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1624, "header": "tr|A0A480VGP1-1|A0A480VGP1_PIG Computationally mapped isoform of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=1 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88230723, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065960.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065960.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033997.1" } ] } }, { "isoform_ac": "A0A5G2QW73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73/entry", "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPARGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1612, "header": "tr|A0A5G2QW73-1|A0A5G2QW73_PIG Isoform 1 of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=1 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88230723, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085546.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085546.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068400.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068400.1" } ] } }, { "isoform_ac": "F1SV99-1", "url": "https://www.uniprot.org/uniprotkb/F1SV99/entry", "sequence": { "sequence": "MKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPAREGLRAVGQKGDRGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1535, "header": "tr|F1SV99-1|F1SV99_PIG Computationally mapped isoform of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=4 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88228521, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003998.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003998.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003907.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003907.4" } ] } }, { "isoform_ac": "I3LHV9-1", "url": "https://www.uniprot.org/uniprotkb/I3LHV9/entry", "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPAREGLRAVGQKGDRGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1609, "header": "tr|I3LHV9-1|I3LHV9_PIG Computationally mapped isoform of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=2 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88230723, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032016.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032016.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023656.2", "url": "https://www.ensembl.org/id/ENSSSCP00000023656.2" } ] } }, { "isoform_ac": "I3LNH0-1", "url": "https://www.uniprot.org/uniprotkb/I3LNH0/entry", "sequence": { "sequence": "MWASWAPGLWLLSICITCSHGAGTGEQCPPSQQEGLKLEHRSDLSTNVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGATSVTQPTRRVFPRGLPGEFALVLTLLLKKHTHQNTWYLFQVTDGDGYPQISLEVNSQERSLELRARGQDGDFVSCIFLVPQLFDLRWHKLVLSVAERVASVHVDCTSASSQPLGPRRPIRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPEFVLEEGCCEISPGGCPPETSKARRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLTGGISQKAERGAKAHQDTAADECPPCVHGARESNVTIGPSGPKGGKGEPGPPGPLGPKGEKGARGNDCVRISLDAPLRCSEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIQGSPGKPGRDGRPGEICVMGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGVPGKEGPGGKPGKPGVPGLKGQKGDPCEVCPTLPKGFENFVGLPGKPGPKGEPGDPAPAREGLRAVGQKGDRGDPGIQGLKGEKGEPCSSCSSAVAAQHLGPSTGAKGDVGPPGLGVPGLPGKVGAPGPTGLKGEKGNFGEAGPAGSPGPPGPVGPTGIKGEKGEPCEPCPALFQHQEEDSHVVALPGPPGKKGEPGPPGFGLPGKHGKAGERGLKGQKGDAGNPGDPGIPGTTGQPGLSGEPGVRGPAGPKGEKGDGCTACPSLQGAMTNMAGQPGKPGPKGDQGPEGVGRPGKPGQPGLPGVQGPPGLKGIQGEPGPPGVGVQGSQGEPGAQGLPGTQGPPGPQGPPGPAGGKGAKGSPGVKGATGPVGPPGASVSGPPGPRGQQGETGLPGARGMPGEKGSQGEKGEPGECSCPSRGDPIFSGMPGPPGVPGPPGPPGMPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCLGQTAHPAALLENGEKGAQGIPGVPGLDSCARCFMEREHPRAEEARGDNGEGDPGCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLRGLTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGSPGEKGESGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGPPGPPGSPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKPGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPPGQPGPAGISAVGLKGDRGSPGERGLLGLPGQPGPPGHPGPPGEPGMDGAAGKEGPPGKQGLYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGSPGPAGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMVAAPGRPGPPGKDGAPGRPGSPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGVGIAGEIGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNMKGPFG", "length": 1608, "header": "tr|I3LNH0-1|I3LNH0_PIG Computationally mapped isoform of Collagen alpha-1(XVI) chain OS=Sus scrofa OX=9823 GN=COL16A1 PE=3 SV=2 CANONICAL=A0A5G2QW73-1" }, "locus": { "chromosome": "6", "start_pos": 88230723, "end_pos": 88177976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028180.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028180.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025644.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025644.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 465, "start_aa": "Thr", "end_pos": 465, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr465", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 628, "start_aa": "Thr", "end_pos": 628, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr628", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" }, { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" }, { "name": "cell adhesion mediated by integrin", "id": "GO:0033627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033627", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" }, { "name": "positive regulation of focal adhesion assembly", "id": "GO:0051894", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051894", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" }, { "name": "integrin activation", "id": "GO:0033622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033622", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QW73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW73" }, { "id": "SM00210", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thrombospondin-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 231, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 465, 628 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 327, "end_pos": 329 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWA5-1", "uniprot_ac": "A0A5G2QWA5", "uniprot_id": "A0A5G2QWA5_PIG", "mass": { "chemical_mass": 228984.0, "monoisotopic_mass": 228984.0 }, "refseq": { "ac": "XP_020946164", "name": "absent in melanoma 1 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946164" }, "gene_names": [ { "name": "CRYBG1", "type": "recommended", "evidence": [ { "id": "A0A5G2QWA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5" } ] }, { "name": "CRYBG1", "type": "synonym", "evidence": [ { "id": "XP_020946164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946164" } ] } ], "protein_names": [ { "name": "Crystallin beta-gamma domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QWA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5/entry#names_and_taxonomy" } ] }, { "name": "absent in melanoma 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020946164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946164" } ] } ], "function": [ { "annotation": "Crystallins are the dominant structural components of the vertebrate eye lens.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5#function" }, { "database": "UniProtKB", "id": "ARBA00003689", "url": "https://www.uniprot.org/uniprotkb/ARBA00003689#function" }, { "database": "UniProtKB", "id": "K7GR17", "url": "https://www.uniprot.org/uniprotkb/K7GR17#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRYBG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5", "locus": { "chromosome": "1", "start_pos": 72763546, "end_pos": 72552922, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004371", "url": "https://www.ensembl.org/id/ENSSSCG00000004371" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23464", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23464", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521168", "url": "https://www.ncbi.nlm.nih.gov/gene/100521168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QWA5", "url": "https://www.orthodb.org/?gene=A0A5G2QWA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946164", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QWA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GR17", "url": "https://www.uniprot.org/uniprotkb/K7GR17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GR17-1", "url": "https://www.uniprot.org/uniprotkb/K7GR17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLSSPPQGDHGESSPSKTLKKHTSFHIWRSKKKQQSPRSDCGVFIPHPPRASVGEARALEAVDGGHMAGECQEFTLQCGESQFFHTTHDIPGPLPTESGMFKKSRAQPPEENKRKPVLGKFGTLFTAGRRRNTRNGFENPISPNAKSVSPKDVTSSKLLERETEKSRQSKQTDVCEEGSPLKKPQEPECERPEGCVQPAPDAERSPCPGSRAVAAAVQQDHKSDSPQLQPLDSEEETFPDATTAAKQLHSSLANSSRQENAESLARSPGEDASPGSGGQEPTQEARDVPGSPTGEGPADGAPSLCAQGCTPESQDAPSQPLEDASAPPGDPPAEGAENRAVSEPPRHSRPRERAHPAKVLTLDIYLSKTEVAQVEEPVVITPGAEDCDDMEKRSSGRRSGRRRRSQKSTDSPGADSPLPECAARDDAVFDYEVAPKAAAENGSAEKKVKSPRAAPDGGVASAACLESKPSPGPKGQLRGESERSKQPPPASSPTKRKGRSRVPEAVPTSPAGGPRAPAKDSPPKRTPDPGPSPAAKESGEEAARVIPRELTVKSSSLLPEIKPEHKRGPLPNHFDGRGEGSRSKELGRSAGVSEAEGLKHRNPFGAGRSTVTTKVTLPAKPKHVELNFKTPKNLDSLGNEHNPFSQPVHKGNTATKISLFENKRANSSPKHTDLRGPRNLPASSNKTFVGRAKLNLAKKAKEMEQPEKKVMPNSNQNGVLGKETSAETKVTLPEEETPGSQLKADVQTDASCPSEPVVTALIPIKDTELLEENSEAANSKRLELENMTDAAQDIPAVLDTKDSPPAAIPKPQDGFSDSQPPAESPNRLSPSLTACIPVDDPKGTCTQAPVSSFPCTDLKVSENQSGCPLAVSHQDSEKMPPSKLAGEGEEETSAAFSPEHSPEAVGSECPSKVLVQVRSFMLPVESTEDVRSQIIPDSSEVREAQLPSCHNNELEVVSVASCAPQKEEVQGKKSTSPKHIDAKEEHVAESGPQVMLPESEKPLPSQAQSQGNGKPLEAESNPTHCPGDQNHLETPQRPDQSIVNGQDSPASLLNISAGSDDSVFDSSSDMEKFTEIIKKMDSTVCVPQKKKKPRMPNSPAPHFAMPPIHEDNLEKVFDPNVFTFGLGKRKEGQPEMSPALQLMQNFDTKSKLRPKRTSAEQSILFKSLQTHANGKDELLVAPEANDKENRDISNSGIKRSRLEKSALFSSMLSSLPQDKIFSPSVTSVSTMTTSFSTSHSTSLAQPSVLEPVVEGAPPCGSEKDQPSLAPSSVKVFSFNSSNTSHSGLKSLSSMEKYVQKEETKKDLDSRSHLPLPETKCSELSKLKNSDDTEKSNHTESILKSNLPSYGNSDTDFAGLFKSSRFDPSISFSGLSLSDTTALRGNIQNKINPRPGKVVIYSEPDVSEACIEVFGDIEDCSAWSLSPVILVKVVRGCWILYEKPNFEGHSIPLEEGELELSGLWGIEDVLERNEETESDKPVVIGSMRHVVQDYRVSQIDLFTEPEGLGLLNSYFDDTEEMQGYGVIQKTCSIKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTEEAYIGSMRPLKMGGRKVEFPTDPKVVIYEKPFFEGKCMELETEMCSFVMEGGEAEEMAEDERLPFTSVGSMKVLRGIWVAYEKPGFSGHQYLLEEGEYKHWNDWGGYGGELRSLRPVLGDFSNAHMIMYSEKNFGSKGASIDVLGIVANLKETGYGAKTQSINVLSGVWVAYENPDFMGEQYILDKGFYTSFEDWGGKNCKISSVQPICLDSFTGPRRRNQIHLFSEPQFQGRSQHFEETTSQIDDSFSTQSCRVLGGSWVAYDGENFSGNQYVLEEGHYPSLSAMGCLPGATFKSLRFIDVEFSEPTIILFEREDFKGKKIEFNTEIVNLRSLGFNTHIRSVQVIGGIWVTYEYGNYRGRQFLLSPAEVPNWYEFSGCRQIGSLRPFPQKRIYFRLRNKATGLFMSTNGNLEDLKLLRIQVMEDVGADDQIWIYQEGCIKCRIAEDCCLTIVGSLVTSGSKLGLALEENIDSQFWSMKPDGRIYSKLKPNLVLDVKGGSQYDQNHLILNSVNKEKLTQEWEAMVL", "length": 2095, "header": "tr|A0A5G2QWA5-1|A0A5G2QWA5_PIG Isoform 1 of Crystallin beta-gamma domain containing 1 OS=Sus scrofa OX=9823 GN=CRYBG1 PE=1 SV=1 CANONICAL=A0A5G2QWA5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5/entry", "sequence": { "sequence": "MPLSSPPQGDHGESSPSKTLKKHTSFHIWRSKKKQQSPRSDCGVFIPHPPRASVGEARALEAVDGGHMAGECQEFTLQCGESQFFHTTHDIPGPLPTESGMFKKSRAQPPEENKRKPVLGKFGTLFTAGRRRNTRNGFENPISPNAKSVSPKDVTSSKLLERETEKSRQSKQTDVCEEGSPLKKPQEPECERPEGCVQPAPDAERSPCPGSRAVAAAVQQDHKSDSPQLQPLDSEEETFPDATTAAKQLHSSLANSSRQENAESLARSPGEDASPGSGGQEPTQEARDVPGSPTGEGPADGAPSLCAQGCTPESQDAPSQPLEDASAPPGDPPAEGAENRAVSEPPRHSRPRERAHPAKVLTLDIYLSKTEVAQVEEPVVITPGAEDCDDMEKRSSGRRSGRRRRSQKSTDSPGADSPLPECAARDDAVFDYEVAPKAAAENGSAEKKVKSPRAAPDGGVASAACLESKPSPGPKGQLRGESERSKQPPPASSPTKRKGRSRVPEAVPTSPAGGPRAPAKDSPPKRTPDPGPSPAAKESGEEAARVIPRELTVKSSSLLPEIKPEHKRGPLPNHFDGRGEGSRSKELGRSAGVSEAEGLKHRNPFGAGRSTVTTKVTLPAKPKHVELNFKTPKNLDSLGNEHNPFSQPVHKGNTATKISLFENKRANSSPKHTDLRGPRNLPASSNKTFVGRAKLNLAKKAKEMEQPEKKVMPNSNQNGVLGKETSAETKVTLPEEETPGSQLKADVQTDASCPSEPVVTALIPIKDTELLEENSEAANSKRLELENMTDAAQDIPAVLDTKDSPPAAIPKPQDGFSDSQPPAESPNRLSPSLTACIPVDDPKGTCTQAPVSSFPCTDLKVSENQSGCPLAVSHQDSEKMPPSKLAGEGEEETSAAFSPEHSPEAVGSECPSKVLVQVRSFMLPVESTEDVRSQIIPDSSEVREAQLPSCHNNELEVVSVASCAPQKEEVQGKKSTSPKHIDAKEEHVAESGPQVMLPESEKPLPSQAQSQGNGKPLEAESNPTHCPGDQNHLETPQRPDQSIVNGQDSPASLLNISAGSDDSVFDSSSDMEKFTEIIKKMDSTVCVPQKKKKPRMPNSPAPHFAMPPIHEDNLEKVFDPNVFTFGLGKRKEGQPEMSPALQLMQNFDTKSKLRPKRTSAEQSILFKSLQTHANGKDELLVAPEANDKENRDISNSGIKRSRLEKSALFSSMLSSLPQDKIFSPSVTSVSTMTTSFSTSHSTSLAQPSVLEPVVEGAPPCGSEKDQPSLAPSSVKVFSFNSSNTSHSGLKSLSSMEKYVQKEETKKDLDSRSHLPLPETKCSELSKLKNSDDTEKSNHTESILKSNLPSYGNSDTDFAGLFKSSRFDPSISFSGLSLSDTTALRGNIQNKINPRPGKVVIYSEPDVSEACIEVFGDIEDCSAWSLSPVILVKVVRGCWILYEKPNFEGHSIPLEEGELELSGLWGIEDVLERNEETESDKPVVIGSMRHVVQDYRVSQIDLFTEPEGLGLLNSYFDDTEEMQGYGVIQKTCSIKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTEEAYIGSMRPLKMGGRKVEFPTDPKVVIYEKPFFEGKCMELETEMCSFVMEGGEAEEMAEDERLPFTSVGSMKVLRGIWVAYEKPGFSGHQYLLEEGEYKHWNDWGGYGGELRSLRPVLGDFSNAHMIMYSEKNFGSKGASIDVLGIVANLKETGYGAKTQSINVLSGVWVAYENPDFMGEQYILDKGFYTSFEDWGGKNCKISSVQPICLDSFTGPRRRNQIHLFSEPQFQGRSQHFEETTSQIDDSFSTQSCRVLGGSWVAYDGENFSGNQYVLEEGHYPSLSAMGCLPGATFKSLRFIDVEFSEPTIILFEREDFKGKKIEFNTEIVNLRSLGFNTHIRSVQVIGGIWVTYEYGNYRGRQFLLSPAEVPNWYEFSGCRQIGSLRPFPQKRIYFRLRNKATGLFMSTNGNLEDLKLLRIQVMEDVGADDQIWIYQEGCIKCRIAEDCCLTIVGSLVTSGSKLGLALEENIDSQFWSMKPDGRIYSKLKPNLVLDVKGGSQYDQNHLILNSVNKEKLTQEWEAMVL", "length": 2095, "header": "tr|A0A5G2QWA5-1|A0A5G2QWA5_PIG Isoform 1 of Crystallin beta-gamma domain containing 1 OS=Sus scrofa OX=9823 GN=CRYBG1 PE=1 SV=1 CANONICAL=A0A5G2QWA5-1" }, "locus": { "chromosome": "1", "start_pos": 72762940, "end_pos": 72553121, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027684.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027684.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026798.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026798.3" } ] } }, { "isoform_ac": "K7GR17-1", "url": "https://www.uniprot.org/uniprotkb/K7GR17/entry", "sequence": { "sequence": "MGGRTCCGCGCGRCGGCANNHSRSVDSRNRCPDSRNRYENSRNRYYDRDLESRAQPPEENKRKPVLGKFGTLFTAGRRRNTRNGFENPISPNAKSVSPKDVTSSKLLERETEKSRQSKQTDVCEEGSPLKKPQEPECERPEGCVQPAPDAERSPCPGSRAVAAAVQQDHKSDSPQLQPLDSEEETFPDATTAAKQLHSSLANSSRQENAESLARSPGEDASPGSGGQEPTQEARDVPGSPTGEGPADGAPSLCAQGCTPESQDAPSQPLEDASAPPGDPPAEGAENRAVSEPPRHSRPRERAHPAKVLTLDIYLSKTEVAQVEEPVVITPGAEDCDDMEKRSSGRRSGRRRRSQKSTDSPGADSPLPECAARDDAVFDYEVAPKAAAENGSAEKKVKSPRAAPDGGVASAACLESKPSPGPKGQLRGESERSKQPPPASSPTKRKGRSRVPEAVPTSPAGGPRAPAKDSPPKRTPDPGPSPAAKESGEEAARVIPRELTVKSSSLLPEIKPEHKRGPLPNHFDGRGEGSRSKELGRSAGVSEAEGLKHRNPFGAGRSTVTTKVTLPAKPKHVELNFKTPKNLDSLGNEHNPFSQPVHKGNTATKISLFENKRANSSPKHTDLRGPRNLPASSNKTFVGRAKLNLAKKAKEMEQPEKKVMPNSNQNGVLGKETSAETKVTLPEEETPGSQLKADVQTDASCPSEPVVTALIPIKDTELLEENSEAANSKRLELENMTDAAQDIPAVLDTKDSPPAAIPKPQDGFSDSQPPAESPNRLSPSLTACIPVDDPKGTCTQAPVSSFPCTDLKVSENQSGCPLAVSHQDSEKMPPSKLAGEGEEETSAAFSPEHSPEAVGSECPSKVLVQVRSFMLPVESTEDVRSQIIPDSSEVREAQLPSCHNNELEVVSVASCAPQKEEVQGKKSTSPKHIDAKEEHVAESGPQVMLPESEKPLPSQAQSQGNGKPLEAESNPTHCPGDQNHLETPQRPDQSIVNGQDSPASLLNISAGSDDSVFDSSSDMEKFTEIIKKMDSTVCVPQKKKKPRMPNSPAPHFAMPPIHEDNLEKVFDPNVFTFGLGKRKEGQPEMSPALQLMQNFDTKSKLRPKRTSAEQSILFKSLQTHANGKDELLVAPEANDKENRDISNSGIKRSRLEKSALFSSMLSSLPQDKIFSPSVTSVSTMTTSFSTSHSTSLAQPSVLEPVVEGAPPCGSEKDQPSLAPSSVKVFSFNSSNTSHSGLKSLSSMEKYVQKEETKKDLDSRSHLPLPETKCSELSKLKNSDDTEKSNHTESILKSNLPSYGNSDTDFAGLFKSSRFDPSISFSGLSLSDTTALRGNIQNKINPRPGKVVIYSEPDVSEACIEVFGDIEDCSAWSLSPVILVKVVRGCWILYEKPNFEGHSIPLEEGELELSGLWGIEDVLERNEETESDKPVVIGSMRHVVQDYRVSQIDLFTEPEGLGLLNSYFDDTEEMQGYGVIQKTCSIKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTEEAYIGSMRPLKMGGRKVEFPTDPKVVIYEKPFFEGKCMELETEMCSFVMEGGEAEEMAEDERLPFTSVGSMKVLRGIWVAYEKPGFSGHQYLLEEGEYKHWNDWGGYGGELRSLRPVLGDFSNAHMIMYSEKNFGSKGASIDVLGIVANLKETGYGAKTQSINVLSGVWVAYENPDFMGEQYILDKGFYTSFEDWGGKNCKISSVQPICLDSFTGPRRRNQIHLFSEPQFQGRSQHFEETTSQIDDSFSTQSCRVLGGSWVAYDGENFSGNQYVLEEGHYPSLSAMGCLPGATFKSLRFIDVEFSEPTIILFEREDFKGKKIEFNTEIVNLRSLGFNTHIRSVQVIGGIWVTYEYGNYRGRQFLLSPAEVPNWYEFSGCRQIGSLRPFPQKRIYFRLRNKATGLFMSTNGNLEDLKLLRIQVMEDVGADDQIWIYQEGCIKCRIAEDCCLTIVGSLVTSGSKLGLALEENIDSQFWSMKPDGRIYSKLKPNLVLDVKGGSQYDQNHLILNSVNKEKLTQEWEAMVL", "length": 2042, "header": "tr|K7GR17-1|K7GR17_PIG Computationally mapped isoform of Crystallin beta-gamma domain containing 1 OS=Sus scrofa OX=9823 GN=CRYBG1 PE=1 SV=3 CANONICAL=A0A5G2QWA5-1" }, "locus": { "chromosome": "1", "start_pos": 72762940, "end_pos": 72646352, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036224.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036224.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030342.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030342.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1055, "end_pos": 1057, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1280, "end_pos": 1282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1283, "end_pos": 1285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1337, "end_pos": 1339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1836, "end_pos": 1838, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 667, "end_pos": 669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 686, "end_pos": 688, "annotation": "n_glycosylation_sequon" }, { "start_pos": 787, "end_pos": 789, "annotation": "n_glycosylation_sequon" }, { "start_pos": 864, "end_pos": 866, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWA5" }, { "id": "PS50915", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50915" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta/gamma crystallin 'Greek key'", "eco_id": "ECO_0000259", "start_pos": 1436, "end_pos": 1483, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1055, "end_pos": 1057 }, { "start_pos": 1280, "end_pos": 1282 }, { "start_pos": 1283, "end_pos": 1285 }, { "start_pos": 1337, "end_pos": 1339 }, { "start_pos": 1836, "end_pos": 1838 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 667, "end_pos": 669 }, { "start_pos": 686, "end_pos": 688 }, { "start_pos": 787, "end_pos": 789 }, { "start_pos": 864, "end_pos": 866 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWB9-1", "uniprot_ac": "A0A5G2QWB9", "uniprot_id": "A0A5G2QWB9_PIG", "mass": { "chemical_mass": 34506.0, "monoisotopic_mass": 34506.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Vomeronasal type-1 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2QWB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative pheromone receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9#function" }, { "database": "UniProtKB", "id": "ARBA00003878", "url": "https://www.uniprot.org/uniprotkb/ARBA00003878#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWB9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQLFSLDVTIALLSLPQTTAGTLGKVSLLYCYLFLYHTQCRLRTTDLILQHLTLANSLVILSKGVPHTVAALGLKYFLRGFACELFCVHRVGRGVSIGSTCLLSVFQTIVISLTHSRWKGLKVKAPKIVHFCIVLFWIQYLPVYSINPIYVLHVSSTWSMRNISKIRDWGICLIHTVLIVVPEVSFSVIITWASGSMVFILYRHSQRVQHIHGNQVSPRSSAESTATQRILSLMSTFLSFYALSSISHVCIALFLSLNWWVMNISALSFLCFPTISPYLFVSHKNMVPRLSFAWVRNSESFKLF", "length": 305, "header": "tr|A0A5G2QWB9-1|A0A5G2QWB9_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QWB9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9/entry", "sequence": { "sequence": "MPQLFSLDVTIALLSLPQTTAGTLGKVSLLYCYLFLYHTQCRLRTTDLILQHLTLANSLVILSKGVPHTVAALGLKYFLRGFACELFCVHRVGRGVSIGSTCLLSVFQTIVISLTHSRWKGLKVKAPKIVHFCIVLFWIQYLPVYSINPIYVLHVSSTWSMRNISKIRDWGICLIHTVLIVVPEVSFSVIITWASGSMVFILYRHSQRVQHIHGNQVSPRSSAESTATQRILSLMSTFLSFYALSSISHVCIALFLSLNWWVMNISALSFLCFPTISPYLFVSHKNMVPRLSFAWVRNSESFKLF", "length": 305, "header": "tr|A0A5G2QWB9-1|A0A5G2QWB9_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QWB9-1" }, "locus": { "chromosome": "6", "start_pos": 57823836, "end_pos": 57822244, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076549.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076549.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068450.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068450.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to pheromone", "id": "GO:0019236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pheromone binding", "id": "GO:0005550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005550", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "pmid": "" }, { "name": "pheromone receptor activity", "id": "GO:0016503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWB9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWB9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWB9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 264, "end_pos": 266 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWC4-1", "uniprot_ac": "A0A5G2QWC4", "uniprot_id": "A0A5G2QWC4_PIG", "mass": { "chemical_mass": 9674.0, "monoisotopic_mass": 9674.0 }, "refseq": { "ac": "XP_020928934", "name": "protein FAM24B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928934" }, "gene_names": [ { "name": "FAM24B", "type": "recommended", "evidence": [ { "id": "A0A5G2QWC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4" } ] }, { "name": "FAM24B", "type": "synonym", "evidence": [ { "id": "XP_020928934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928934" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 24 member B", "type": "synonym", "evidence": [ { "id": "A0A5G2QWC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4/entry#names_and_taxonomy" } ] }, { "name": "protein FAM24B", "type": "synonym", "evidence": [ { "id": "XP_020928934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928934" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM24B", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWC4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051569", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051569", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516518", "url": "https://www.ncbi.nlm.nih.gov/gene/100516518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516518", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516518", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWC4", "url": "https://www.orthodb.org/?gene=A0A5G2QWC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35860:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35860:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928934", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928934", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QWC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYCIGGGILLAMLVLMAVVICLYYKVANALKVPKVPVCLTLKNNPAMVAQDKVAAAITAGSYPNLQCCDECNLYAGFDPLPPCFCDVNEGL", "length": 91, "header": "tr|A0A5G2QWC4-1|A0A5G2QWC4_PIG Isoform 1 of Family with sequence similarity 24 member B OS=Sus scrofa OX=9823 GN=FAM24B PE=3 SV=2 CANONICAL=A0A5G2QWC4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4/entry", "sequence": { "sequence": "MYCIGGGILLAMLVLMAVVICLYYKVANALKVPKVPVCLTLKNNPAMVAQDKVAAAITAGSYPNLQCCDECNLYAGFDPLPPCFCDVNEGL", "length": 91, "header": "tr|A0A5G2QWC4-1|A0A5G2QWC4_PIG Isoform 1 of Family with sequence similarity 24 member B OS=Sus scrofa OX=9823 GN=FAM24B PE=3 SV=2 CANONICAL=A0A5G2QWC4-1" }, "locus": { "chromosome": "14", "start_pos": 132469622, "end_pos": 132468458, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079390.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079390.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069156.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516518", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWC4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 91, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWC4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWC4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWC8-1", "uniprot_ac": "A0A5G2QWC8", "uniprot_id": "A0A5G2QWC8_PIG", "mass": { "chemical_mass": 38660.0, "monoisotopic_mass": 38660.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QWC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTNINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNIKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKSPSTDDWIRKKWYIYTMEYYSAIKKNDIMPFAATWMKLENLILSEMSQKDKDKYHMISLITGI", "length": 327, "header": "tr|A0A5G2QWC8-1|A0A5G2QWC8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWC8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8/entry", "sequence": { "sequence": "MKLEHTLTPCTNINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNIKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQPKSPSTDDWIRKKWYIYTMEYYSAIKKNDIMPFAATWMKLENLILSEMSQKDKDKYHMISLITGI", "length": 327, "header": "tr|A0A5G2QWC8-1|A0A5G2QWC8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWC8-1" }, "locus": { "chromosome": "9", "start_pos": 59071424, "end_pos": 59070444, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085089.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085089.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066243.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066243.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 327, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWC8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 177, "end_pos": 179 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWG1-1", "uniprot_ac": "A0A5G2QWG1", "uniprot_id": "A0A5G2QWG1_PIG", "mass": { "chemical_mass": 19352.0, "monoisotopic_mass": 19352.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWG1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047953", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047953", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QWG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMGVHVSFLRKVLSGYMSKSGIDGSYGSSVYRFLRYLHTVLHSGCIDLHSHQQCRRVPFSPHPLHHLLFVDLLMMAILTGVRWHLMVVLMCISLIIKEVEHFFMCLLAICISSLQNCLFRPFAHFSIGLLAFLLLSCISCLYILELKPLSIASFETIFSHSVSCLFVPF", "length": 170, "header": "tr|A0A5G2QWG1-1|A0A5G2QWG1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWG1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1/entry", "sequence": { "sequence": "MNMGVHVSFLRKVLSGYMSKSGIDGSYGSSVYRFLRYLHTVLHSGCIDLHSHQQCRRVPFSPHPLHHLLFVDLLMMAILTGVRWHLMVVLMCISLIIKEVEHFFMCLLAICISSLQNCLFRPFAHFSIGLLAFLLLSCISCLYILELKPLSIASFETIFSHSVSCLFVPF", "length": 170, "header": "tr|A0A5G2QWG1-1|A0A5G2QWG1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWG1-1" }, "locus": { "chromosome": "17", "start_pos": 2863125, "end_pos": 2862616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066664.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066664.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068490.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068490.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWG1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 170, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWG1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWG1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWJ6-1", "uniprot_ac": "A0A5G2QWJ6", "uniprot_id": "A0A5G2QWJ6_PIG", "mass": { "chemical_mass": 10447.0, "monoisotopic_mass": 10447.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWJ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049231", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049231", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHCNKNRIKEYGGASGGVNCELAEFQELFKQSELSVEEVADDVSWKVFNESCQIHFSRQRTKTKSFFKKRTDHLMSMTDISMVGFLEDF", "length": 90, "header": "tr|A0A5G2QWJ6-1|A0A5G2QWJ6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWJ6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6/entry", "sequence": { "sequence": "MLHCNKNRIKEYGGASGGVNCELAEFQELFKQSELSVEEVADDVSWKVFNESCQIHFSRQRTKTKSFFKKRTDHLMSMTDISMVGFLEDF", "length": 90, "header": "tr|A0A5G2QWJ6-1|A0A5G2QWJ6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWJ6-1" }, "locus": { "chromosome": "14", "start_pos": 132234071, "end_pos": 132233277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068181.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068181.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069236.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069236.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 90, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWJ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWJ6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWK5-1", "uniprot_ac": "A0A5G2QWK5", "uniprot_id": "A0A5G2QWK5_PIG", "mass": { "chemical_mass": 96582.0, "monoisotopic_mass": 96582.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWK5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021656", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021656", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13240", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13240", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22826", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22826", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22826:SF106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22826:SF106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23323", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23323", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLN2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVQASGIELICEKDIDLAAQVQELLEFLHEKQHELELNAEQTHKRLEQCLQLRHLQAEVKQVLGWIRNGESMLSASLVNASSLSEAEQLQREHEQFQLAIEKTHQSALQVQQKAEALLQAGHYDADAIRECAEKVALHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYRRDEDWCGGRDKLGPAAEMDHVIPLISKHLEQKEAFLKACTLARRNAEVFLKYIHRNNVSMPSAASHTRGPEQQVKAILSELLQRENRVLHFWTLKKRRLDQCQQYVVFERSAKQALDWIQETGEYYLSTHTSTGETTEETQELLKEYGEFRVPAKQTKEKVKLLIQLADSFVEKGHIHATEIRKWVTTVDKHYRDFSLRMGKYRYSLEKALGVNTEDNKDLELDIIPASLSDREVKLRDANHEVNEEKRKSARKKEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGELKDGLEVMLSVPKKANDAMHVSMLEGFDENLDVQGELILQDAFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRGMEWRMLTARGMEAASQTPSPLLLEPLRTQWTVTRRRNREMKHREVGSALLGLTSCLSGGILGAENTRATMQEGAQ", "length": 837, "header": "tr|A0A5G2QWK5-1|A0A5G2QWK5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QWK5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5/entry", "sequence": { "sequence": "MEVQASGIELICEKDIDLAAQVQELLEFLHEKQHELELNAEQTHKRLEQCLQLRHLQAEVKQVLGWIRNGESMLSASLVNASSLSEAEQLQREHEQFQLAIEKTHQSALQVQQKAEALLQAGHYDADAIRECAEKVALHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYRRDEDWCGGRDKLGPAAEMDHVIPLISKHLEQKEAFLKACTLARRNAEVFLKYIHRNNVSMPSAASHTRGPEQQVKAILSELLQRENRVLHFWTLKKRRLDQCQQYVVFERSAKQALDWIQETGEYYLSTHTSTGETTEETQELLKEYGEFRVPAKQTKEKVKLLIQLADSFVEKGHIHATEIRKWVTTVDKHYRDFSLRMGKYRYSLEKALGVNTEDNKDLELDIIPASLSDREVKLRDANHEVNEEKRKSARKKEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGELKDGLEVMLSVPKKANDAMHVSMLEGFDENLDVQGELILQDAFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRGMEWRMLTARGMEAASQTPSPLLLEPLRTQWTVTRRRNREMKHREVGSALLGLTSCLSGGILGAENTRATMQEGAQ", "length": 837, "header": "tr|A0A5G2QWK5-1|A0A5G2QWK5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QWK5-1" }, "locus": { "chromosome": "13", "start_pos": 135967945, "end_pos": 135868674, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076632.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076632.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062564.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062564.2" } ] } }, { "isoform_ac": "A0A8W4FLN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLN2/entry", "sequence": { "sequence": "MYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGELKDGLEVMLSVPKKANDAMHVSMLEGFDENLDVQGELILQDAFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDVDSQGDGSSQPDTISIASRTSQNTVDSDKLSGGCELTVVLQDFNAGHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSALCISHSRSSVEMDCFFPLVKEASGALATLTEEQRGT", "length": 371, "header": "tr|A0A8W4FLN2-1|A0A8W4FLN2_PIG Computationally mapped isoform of Kalirin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWK5-1" }, "locus": { "chromosome": "13", "start_pos": 135907746, "end_pos": 135803623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098804.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098804.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080249.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080249.1" } ] } }, { "isoform_ac": "A0A8W4FNQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNQ5/entry", "sequence": { "sequence": "MEVQASGIELICEKDIDLAAQVQELLEFLHEKQHELELNAEQTHKRLEQCLQLRHLQAEVKQVLGWIRNGESMLSASLVNASSLSEAEQLQREHEQFQLAIESLFHATSLQKTHQSALQVQQKAEALLQAGHYDADAIRECAEKVALHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYRRDEDWCGGRDKLGPAAEMDHVIPLISKHLEQKEAFLKACTLARRNAEVFLKYIHRNNVSMPSAASHTRGPEQQVKAILSELLQRENRVLHFWTLKKRRLDQCQQYVVFERSAKQALDWIQETGEYYLSTHTSTGETTEETQELLKEYGEFRVPAKQTKEKVKLLIQLADSFVEKGHIHATEIRKWVTTVDKHYRDFSLRMGKYRYSLEKALGVNTEDNKDLELDIIPASLSDREVKLRDANHEVNEEKRKSARKKEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNSSDFLPRLAKPFRPSALRPVHSSQLKAGAPSAIFTETHTEGQK", "length": 546, "header": "tr|A0A8W4FNQ5-1|A0A8W4FNQ5_PIG Computationally mapped isoform of DH domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWK5-1" }, "locus": { "chromosome": "13", "start_pos": 135967945, "end_pos": 135912355, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104885.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104885.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081127.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081127.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 757, "end_pos": 759, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWK5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 837, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWK5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWK5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 433, "end_pos": 608, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWK5" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 620, "end_pos": 732, "start_aa": "Asn", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 708, "end_pos": 710 }, { "start_pos": 757, "end_pos": 759 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWL3-1", "uniprot_ac": "A0A5G2QWL3", "uniprot_id": "A0A5G2QWL3_PIG", "mass": { "chemical_mass": 22996.0, "monoisotopic_mass": 22996.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QWL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWL3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENRIKKLESNIRDPWDNIKRAKLCIIGMPEGVEKDKGTENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLKPIRPTPRHIIIKMAKVSDEERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFQLLKGKNMQSRILYPARISFKIEGEIKIFPNKQKLKEYSNIKPKKKGRKGKKKEKKKKKKKRKN", "length": 196, "header": "tr|A0A5G2QWL3-1|A0A5G2QWL3_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QWL3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3/entry", "sequence": { "sequence": "MENRIKKLESNIRDPWDNIKRAKLCIIGMPEGVEKDKGTENIFEEIIAGNFPNLKDTGFKIQEAQRAPNKLKPIRPTPRHIIIKMAKVSDEERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFQLLKGKNMQSRILYPARISFKIEGEIKIFPNKQKLKEYSNIKPKKKGRKGKKKEKKKKKKKRKN", "length": 196, "header": "tr|A0A5G2QWL3-1|A0A5G2QWL3_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QWL3-1" }, "locus": { "chromosome": "7", "start_pos": 71861474, "end_pos": 71860887, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074075.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074075.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069339.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069339.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 77, "start_aa": "Thr", "end_pos": 77, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr77", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWL3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWL3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 116, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL3" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 120, "end_pos": 178, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 77 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWL4-1", "uniprot_ac": "A0A5G2QWL4", "uniprot_id": "A0A5G2QWL4_PIG", "mass": { "chemical_mass": 15309.0, "monoisotopic_mass": 15309.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100626247", "type": "recommended", "evidence": [ { "id": "A0A5G2QWL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100626247", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWL4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13999", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13999", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13999:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13999:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LMRQPRPEPSHIHGPPPREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY", "length": 140, "header": "tr|A0A5G2QWL4-1|A0A5G2QWL4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100626247 PE=3 SV=2 CANONICAL=A0A5G2QWL4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4/entry", "sequence": { "sequence": "LMRQPRPEPSHIHGPPPREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY", "length": 140, "header": "tr|A0A5G2QWL4-1|A0A5G2QWL4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100626247 PE=3 SV=2 CANONICAL=A0A5G2QWL4-1" }, "locus": { "chromosome": "2", "start_pos": 135912, "end_pos": 134029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082936.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082936.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069256.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069256.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "negative regulation of viral genome replication", "id": "GO:0045071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045071", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "type I interferon-mediated signaling pathway", "id": "GO:0060337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060337", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "response to type II interferon", "id": "GO:0034341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034341", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "response to interferon-alpha", "id": "GO:0035455", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035455", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "response to interferon-beta", "id": "GO:0035456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035456", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" }, { "name": "host-mediated suppression of symbiont invasion", "id": "GO:0046597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046597", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWL4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 140, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWL4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWL9-1", "uniprot_ac": "A0A5G2QWL9", "uniprot_id": "A0A5G2QWL9_PIG", "mass": { "chemical_mass": 36545.0, "monoisotopic_mass": 36545.0 }, "refseq": {}, "gene_names": [ { "name": "LOC102161780", "type": "recommended", "evidence": [ { "id": "A0A5G2QWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" } ] } ], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102161780", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWL9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043115", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043115", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102161780", "url": "https://www.ncbi.nlm.nih.gov/gene/102161780", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISRVCSTGAKSSGVHSPGVQDSGAHGLLQGIQGGSVLFHVFEKQQAELEEITWGFGPGSEYRVLLRVRPGEAPMWVSLQDRYQKRVRVPNMMSLKIENLTSEDSGSYRARGSCTGGVEFTQVFHLTVYEPVPVPKIQVHSSSITPGWCNVTVECMTSGDTEDLKVTWEGKGLPKELEEKVMPGPAYNSHTLAVNLPLGKPYTNITCVVSNQVDQKTDTFDLGRVCDHVRETGSHGKAIVGTLGGILCAVMAVLLFLGTGLYLWMMYKKSYLTSERGLQQIHKDRDDGIDCAELSQKMYQEDMYMDINEQYMKEERPFYTVYSVIHNE", "length": 328, "header": "tr|A0A5G2QWL9-1|A0A5G2QWL9_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102161780 PE=4 SV=1 CANONICAL=A0A5G2QWL9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9/entry", "sequence": { "sequence": "MISRVCSTGAKSSGVHSPGVQDSGAHGLLQGIQGGSVLFHVFEKQQAELEEITWGFGPGSEYRVLLRVRPGEAPMWVSLQDRYQKRVRVPNMMSLKIENLTSEDSGSYRARGSCTGGVEFTQVFHLTVYEPVPVPKIQVHSSSITPGWCNVTVECMTSGDTEDLKVTWEGKGLPKELEEKVMPGPAYNSHTLAVNLPLGKPYTNITCVVSNQVDQKTDTFDLGRVCDHVRETGSHGKAIVGTLGGILCAVMAVLLFLGTGLYLWMMYKKSYLTSERGLQQIHKDRDDGIDCAELSQKMYQEDMYMDINEQYMKEERPFYTVYSVIHNE", "length": 328, "header": "tr|A0A5G2QWL9-1|A0A5G2QWL9_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102161780 PE=4 SV=1 CANONICAL=A0A5G2QWL9-1" }, "locus": { "chromosome": "4", "start_pos": 92818796, "end_pos": 92810957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079041.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079041.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069261.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069261.1" } ] } }, { "isoform_ac": "A0A5G2QZK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK7/entry", "sequence": { "sequence": "MEPCSEDPHLCWVSQLLRFTSLLLSVCSTGAKSSGVHSPGVQDSGAHGLLQGIQGGSVLFHVFEKQQAELEEITWGFGPGSEYRVLLRVRPGEAPMWVSLQDRYQKRVRVPNMMSLKIENLTSEDSGSYRARGSCTGGVEFTQVFHLTVYEPVPVPKIQVHSSSITPGWCNVTVECMTSGDTEDLKVTWEGKGLPKELEEKVMPGPAYNSHTLAVNLPLGKPYTNITCVVSNQVDQKTDTFDLGRVCDHVRETGSHGKAIVGTLGGILCAVMAVLLFLGTGLYLWMMYKKSYLTSEREQDCSKSTRTVMMASTVQN", "length": 316, "header": "tr|A0A5G2QZK7-1|A0A5G2QZK7_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102161780 PE=4 SV=2 CANONICAL=A0A5G2QWL9-1" }, "locus": { "chromosome": "4", "start_pos": 92819886, "end_pos": 92811351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086327.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086327.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069568.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069568.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWL9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 328, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWL9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWL9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL9" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 219, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWM1-1", "uniprot_ac": "A0A5G2QWM1", "uniprot_id": "A0A5G2QWM1_PIG", "mass": { "chemical_mass": 98815.0, "monoisotopic_mass": 98815.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QWM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QWM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWM1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050663", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050663", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSFPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIAPHKIKYLGIHLTKEVKDLYAENYKTLLKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QWM1-1|A0A5G2QWM1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWM1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSFPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYEKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIAPHKIKYLGIHLTKEVKDLYAENYKTLLKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2QWM1-1|A0A5G2QWM1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWM1-1" }, "locus": { "chromosome": "13", "start_pos": 56297440, "end_pos": 56294906, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075895.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075895.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068545.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068545.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWM1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 845, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWM1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWM1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 345, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 695, "end_pos": 697 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWM5-1", "uniprot_ac": "A0A5G2QWM5", "uniprot_id": "A0A5G2QWM5_PIG", "mass": { "chemical_mass": 32479.0, "monoisotopic_mass": 32479.0 }, "refseq": {}, "gene_names": [ { "name": "RAB24", "type": "recommended", "evidence": [ { "id": "A0A5G2QWM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ] } ], "protein_names": [ { "name": "RAB24, member RAS onco family", "type": "synonym", "evidence": [ { "id": "A0A5G2QWM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different sets of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. RAB24 is an atypical RAB protein that presents low GTPase activity and thereby exists predominantly in the GTP-bound active state. RAB24 is required for the clearance of late autophagic vacuoles under basal conditions. It is not needed for starvation-induced autophagy. Involved in the modulation of meiotic apparatus assembly and meiotic progression during oocyte maturation, possibly through regulation of kinetochore-microtubule interaction.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SG61", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG61#function" }, { "database": "UniProtKB", "id": "ARBA00093319", "url": "https://www.uniprot.org/uniprotkb/ARBA00093319#function" }, { "database": "UniProtKB", "id": "F1S3C2", "url": "https://www.uniprot.org/uniprotkb/F1S3C2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB24", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014043", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014043", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04118", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04118", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47978", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47978", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SG61", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SG61-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3C2", "url": "https://www.uniprot.org/uniprotkb/F1S3C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3C2-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEVGAYTSPDQAGARGLVVQGKDPDLVFCSRVVRSTYVAPRVICWRRTEGVDVWTSTTSRTMQTVAVPWFLGCGGRKWLLAWVKKIGAALATNSKIPVGSLSLTLNLWGPEDSLYCWPSPLSVRTQFSGMKLQSLLFTDIKAQLFETSSKTGQSVGECWPGLTAKQAGATKEAEKSLECWVIGPQ", "length": 294, "header": "tr|A0A5G2QWM5-1|A0A5G2QWM5_PIG Isoform 1 of RAB24, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB24 PE=1 SV=1 CANONICAL=A0A5G2QWM5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SG61-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SG61/entry", "sequence": { "sequence": "MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADSSCSLVPWVWGKEVAACLGQENRGCLGYQQQDPCGKPFTDLESLGSRRFPVLLAFPFVSAHPVLRYEASVTSLYRYQSSAL", "length": 225, "header": "tr|A0A4X1SG61-1|A0A4X1SG61_PIG Computationally mapped isoform of Ras-related protein Rab-24 OS=Sus scrofa OX=9823 GN=RAB24 PE=1 SV=1 CANONICAL=A0A5G2QWM5-1" }, "locus": { "chromosome": "2", "start_pos": 80648003, "end_pos": 80646853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063884.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063884.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040933.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040933.2" } ] } }, { "isoform_ac": "A0A5G2QWM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5/entry", "sequence": { "sequence": "MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEVGAYTSPDQAGARGLVVQGKDPDLVFCSRVVRSTYVAPRVICWRRTEGVDVWTSTTSRTMQTVAVPWFLGCGGRKWLLAWVKKIGAALATNSKIPVGSLSLTLNLWGPEDSLYCWPSPLSVRTQFSGMKLQSLLFTDIKAQLFETSSKTGQSVGECWPGLTAKQAGATKEAEKSLECWVIGPQ", "length": 294, "header": "tr|A0A5G2QWM5-1|A0A5G2QWM5_PIG Isoform 1 of RAB24, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB24 PE=1 SV=1 CANONICAL=A0A5G2QWM5-1" }, "locus": { "chromosome": "2", "start_pos": 80648124, "end_pos": 80646853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088239.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088239.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066344.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066344.1" } ] } }, { "isoform_ac": "F1S3C2-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C2/entry", "sequence": { "sequence": "MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRNLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTGVSFPSPVETSSRPTASGPLHELPDPPKE", "length": 211, "header": "tr|F1S3C2-1|F1S3C2_PIG Computationally mapped isoform of Ras-related protein Rab-24 OS=Sus scrofa OX=9823 GN=RAB24 PE=1 SV=2 CANONICAL=A0A5G2QWM5-1" }, "locus": { "chromosome": "2", "start_pos": 80648295, "end_pos": 80646853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015340.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015340.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014932.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014932.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "autophagosome membrane", "id": "GO:0000421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000421", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 294, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWM5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWN6-1", "uniprot_ac": "A0A5G2QWN6", "uniprot_id": "A0A5G2QWN6_PIG", "mass": { "chemical_mass": 14222.0, "monoisotopic_mass": 14222.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047423", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047423", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QWN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAILTGMRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLFRSFAHFSIDWLVFLLLGCISCLYILEIKPLSVASFETVFSHSVSCPFVFFWVSFAVQKLFSLMRSHGFIFALISIALGD", "length": 125, "header": "tr|A0A5G2QWN6-1|A0A5G2QWN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWN6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6/entry", "sequence": { "sequence": "MMAILTGMRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLFRSFAHFSIDWLVFLLLGCISCLYILEIKPLSVASFETVFSHSVSCPFVFFWVSFAVQKLFSLMRSHGFIFALISIALGD", "length": 125, "header": "tr|A0A5G2QWN6-1|A0A5G2QWN6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWN6-1" }, "locus": { "chromosome": "15", "start_pos": 69366006, "end_pos": 69364473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083236.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083236.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068560.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068560.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWN6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 125, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWN6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWN6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWP5-1", "uniprot_ac": "A0A5G2QWP5", "uniprot_id": "A0A5G2QWP5_PIG", "mass": { "chemical_mass": 31265.0, "monoisotopic_mass": 31265.0 }, "refseq": {}, "gene_names": [ { "name": "NFILZ", "type": "recommended", "evidence": [ { "id": "A0A5G2QWP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ] } ], "protein_names": [ { "name": "NFIL3 like basic leucine zipper", "type": "synonym", "evidence": [ { "id": "A0A5G2QWP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NFILZ", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5", "locus": { "chromosome": "2", "start_pos": 70680203, "end_pos": 70681063, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055667", "url": "https://www.ensembl.org/id/ENSSSCG00000055667" } ] } } ], "crossref": [ { "id": "A0A5G2QWP5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046561", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046561", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14694", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14694", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102167936", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWP5", "url": "https://www.orthodb.org/?gene=A0A5G2QWP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15284", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15284", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15284:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15284:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDMDLLALDVPQSRSKILHRAQGRGPAVRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAALEGRLAALLEENALLRAELRVLKHRFGLLPSIGGTRTLPTLLWEPPWTGDPCSRAEQHLSLPGSHGCLLRPCSLDAGVPGCWGCLVAHKWAGQATSPRSLQDPTPSAPKKMDMALQAALPAAFFSCHLLDRHGGPRSELRPCWGLWSPVPTGCRVSGPSDVLLTPSADPLGLPAGVACPVSGNDPEGLAQPSLPHKLRIKSRASGRVPRCWEGGRGPI", "length": 286, "header": "tr|A0A5G2QWP5-1|A0A5G2QWP5_PIG Isoform 1 of NFIL3 like basic leucine zipper OS=Sus scrofa OX=9823 GN=NFILZ PE=3 SV=1 CANONICAL=A0A5G2QWP5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5/entry", "sequence": { "sequence": "MDMDLLALDVPQSRSKILHRAQGRGPAVRRQREFMPEEKKDTVYWEKRRKNNEAAKRSREKRRLNDAALEGRLAALLEENALLRAELRVLKHRFGLLPSIGGTRTLPTLLWEPPWTGDPCSRAEQHLSLPGSHGCLLRPCSLDAGVPGCWGCLVAHKWAGQATSPRSLQDPTPSAPKKMDMALQAALPAAFFSCHLLDRHGGPRSELRPCWGLWSPVPTGCRVSGPSDVLLTPSADPLGLPAGVACPVSGNDPEGLAQPSLPHKLRIKSRASGRVPRCWEGGRGPI", "length": 286, "header": "tr|A0A5G2QWP5-1|A0A5G2QWP5_PIG Isoform 1 of NFIL3 like basic leucine zipper OS=Sus scrofa OX=9823 GN=NFILZ PE=3 SV=1 CANONICAL=A0A5G2QWP5-1" }, "locus": { "chromosome": "2", "start_pos": 70681063, "end_pos": 70680206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105997.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105997.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077278.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077278.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102167936", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167936", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" }, { "name": "circadian rhythm", "id": "GO:0007623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007623", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 286, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWP5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWP5" }, { "id": "PS50217", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 91, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWQ5-1", "uniprot_ac": "A0A5G2QWQ5", "uniprot_id": "A0A5G2QWQ5_PIG", "mass": { "chemical_mass": 11779.0, "monoisotopic_mass": 11779.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWQ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWQ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKDKDKERILKAAREKQCVNYKGTPIRLSADFFTETLRGRTEWQDIFKALKGINLQFRILYQARISFKIEGEINNFSNKQKLKEYSNGKHSLKGILKGLL", "length": 101, "header": "tr|A0A5G2QWQ5-1|A0A5G2QWQ5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWQ5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5/entry", "sequence": { "sequence": "MAKDKDKERILKAAREKQCVNYKGTPIRLSADFFTETLRGRTEWQDIFKALKGINLQFRILYQARISFKIEGEINNFSNKQKLKEYSNGKHSLKGILKGLL", "length": 101, "header": "tr|A0A5G2QWQ5-1|A0A5G2QWQ5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWQ5-1" }, "locus": { "chromosome": "X", "start_pos": 73055177, "end_pos": 73054875, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085625.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085625.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069379.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069379.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWQ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 101, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWQ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWQ5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 32, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWQ5" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 98, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWS0-1", "uniprot_ac": "A0A5G2QWS0", "uniprot_id": "A0A5G2QWS0_PIG", "mass": { "chemical_mass": 14960.0, "monoisotopic_mass": 14960.0 }, "refseq": { "ac": "XP_003354528", "name": "inactive Ufm1-specific protease 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354528" }, "gene_names": [ { "name": "UFSP1", "type": "recommended", "evidence": [ { "id": "A0A5G2QWS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0" } ] }, { "name": "UFSP1", "type": "synonym", "evidence": [ { "id": "XP_003354528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354528" } ] } ], "protein_names": [ { "name": "UFM1 specific peptidase 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QWS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0/entry#names_and_taxonomy" } ] }, { "name": "inactive Ufm1-specific protease 1", "type": "synonym", "evidence": [ { "id": "XP_003354528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354528" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UFSP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0", "locus": { "chromosome": "3", "start_pos": 8731277, "end_pos": 8732278, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041835", "url": "https://www.ensembl.org/id/ENSSSCG00000041835" } ] } } ], "crossref": [ { "id": "A0A5G2QWS0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041835", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041835", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620991", "url": "https://www.ncbi.nlm.nih.gov/gene/100620991", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620991", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620991", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWS0", "url": "https://www.orthodb.org/?gene=A0A5G2QWS0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48153:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48153:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07910", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07910", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003354528", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354528", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDKPPGFRGSRSWIGCVEASLCLDHFGGPQGRLCHVPRGAGLQGELERLYSHFAGGGGPVMVGGDADAQAKALLGVCLGPGTEAYVLVLDPHCWGAPKNPSELQAAGWVGWQEVSTAFDPNSFYNLCLTSCNSEKQRNALD", "length": 142, "header": "tr|A0A5G2QWS0-1|A0A5G2QWS0_PIG Isoform 1 of UFM1 specific peptidase 1 OS=Sus scrofa OX=9823 GN=UFSP1 PE=3 SV=1 CANONICAL=A0A5G2QWS0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0/entry", "sequence": { "sequence": "MGDKPPGFRGSRSWIGCVEASLCLDHFGGPQGRLCHVPRGAGLQGELERLYSHFAGGGGPVMVGGDADAQAKALLGVCLGPGTEAYVLVLDPHCWGAPKNPSELQAAGWVGWQEVSTAFDPNSFYNLCLTSCNSEKQRNALD", "length": 142, "header": "tr|A0A5G2QWS0-1|A0A5G2QWS0_PIG Isoform 1 of UFM1 specific peptidase 1 OS=Sus scrofa OX=9823 GN=UFSP1 PE=3 SV=1 CANONICAL=A0A5G2QWS0-1" }, "locus": { "chromosome": "3", "start_pos": 8731848, "end_pos": 8731423, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077397.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077397.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069394.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069394.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620991", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620991", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "deUFMylase activity", "id": "GO:0071567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWS0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 142, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWS0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS0" }, { "id": "PF07910", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UFSP1/2/DUB catalytic", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 128, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWS2-1", "uniprot_ac": "A0A5G2QWS2", "uniprot_id": "A0A5G2QWS2_PIG", "mass": { "chemical_mass": 20791.0, "monoisotopic_mass": 20791.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100516119", "type": "recommended", "evidence": [ { "id": "A0A5G2QWS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2" } ] } ], "protein_names": [ { "name": "Cystatin domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QWS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100516119", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWS2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007125", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007125", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47010", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47010", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47010:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47010:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSAEDAGPAQHSGAKPGGARYRGCRAHPAWEGHRLGPCPRGGGAMARLCPGLLLLVAVVALTSTGVHAWGSPKVVRKFQDIPKSYVYVQQALWFAMKEYNKASQDPYIFKVKEILKSQEQVTESLDYLLEVKIARTMCKKISGENDNCLVQQDPKMQKMFYCTFIVASKPWKFELNMLKKECQPV", "length": 186, "header": "tr|A0A5G2QWS2-1|A0A5G2QWS2_PIG Isoform 1 of Cystatin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100516119 PE=3 SV=1 CANONICAL=A0A5G2QWS2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2/entry", "sequence": { "sequence": "MPSAEDAGPAQHSGAKPGGARYRGCRAHPAWEGHRLGPCPRGGGAMARLCPGLLLLVAVVALTSTGVHAWGSPKVVRKFQDIPKSYVYVQQALWFAMKEYNKASQDPYIFKVKEILKSQEQVTESLDYLLEVKIARTMCKKISGENDNCLVQQDPKMQKMFYCTFIVASKPWKFELNMLKKECQPV", "length": 186, "header": "tr|A0A5G2QWS2-1|A0A5G2QWS2_PIG Isoform 1 of Cystatin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100516119 PE=3 SV=1 CANONICAL=A0A5G2QWS2-1" }, "locus": { "chromosome": "17", "start_pos": 30447166, "end_pos": 30440971, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070414.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070414.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069316.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069316.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type endopeptidase inhibitor activity", "id": "GO:0004869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004869", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS2" }, { "id": "SM00043", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00043" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cystatin", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 184, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWS5-1", "uniprot_ac": "A0A5G2QWS5", "uniprot_id": "A0A5G2QWS5_PIG", "mass": { "chemical_mass": 32080.0, "monoisotopic_mass": 32080.0 }, "refseq": {}, "gene_names": [ { "name": "LOC106506856", "type": "recommended", "evidence": [ { "id": "A0A5G2QWS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 201", "type": "recommended", "evidence": [ { "id": "A0A5G2QWS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106506856", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWS5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050056", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050056", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QWS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSWPCWQTAWHRARAPCLAHCLGVPQAPIVPDFLKAQTHNPGTHRGAGQVEPIKASPARCRPAPAPGVSSVGDRAQVGSRTPAWACRADAAGISGQGLATAAAVRGVQSLQGSRMELEAQFPGWSSPEEEALGSGTSQPGPRRLLKHSTPEGAAVSWRSGLLGDVPSPGASPLPAPSSQGLPSPRAGLSPTAPVRKRRLSTIRASGVSSADPWAFEEDPPVPASFTPRRRQRRQQQQDASPQARRGPPHLGLPGIPNKTSRRRRDLKKLAAALERARQWEIRLLQSIEEATQHELTVQEE", "length": 300, "header": "tr|A0A5G2QWS5-1|A0A5G2QWS5_PIG Isoform 1 of Coiled-coil domain containing 201 OS=Sus scrofa OX=9823 GN=LOC106506856 PE=4 SV=2 CANONICAL=A0A5G2QWS5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5/entry", "sequence": { "sequence": "MSWPCWQTAWHRARAPCLAHCLGVPQAPIVPDFLKAQTHNPGTHRGAGQVEPIKASPARCRPAPAPGVSSVGDRAQVGSRTPAWACRADAAGISGQGLATAAAVRGVQSLQGSRMELEAQFPGWSSPEEEALGSGTSQPGPRRLLKHSTPEGAAVSWRSGLLGDVPSPGASPLPAPSSQGLPSPRAGLSPTAPVRKRRLSTIRASGVSSADPWAFEEDPPVPASFTPRRRQRRQQQQDASPQARRGPPHLGLPGIPNKTSRRRRDLKKLAAALERARQWEIRLLQSIEEATQHELTVQEE", "length": 300, "header": "tr|A0A5G2QWS5-1|A0A5G2QWS5_PIG Isoform 1 of Coiled-coil domain containing 201 OS=Sus scrofa OX=9823 GN=LOC106506856 PE=4 SV=2 CANONICAL=A0A5G2QWS5-1" }, "locus": { "chromosome": "18", "start_pos": 50041410, "end_pos": 50033718, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072610.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072610.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069399.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069399.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWS5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 300, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWS5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWS5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWU3-1", "uniprot_ac": "A0A5G2QWU3", "uniprot_id": "A0A5G2QWU3_PIG", "mass": { "chemical_mass": 22544.0, "monoisotopic_mass": 22544.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWU3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046508", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046508", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QWU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAKSQRRSSHTDRQVTPTIKSHRWQSHSDGQVTPMVKSHRWQSHSDGQVTLTVRSHRPSSHTDGKVTPTAKSQRRHSDGQVTPTVRSHRPSSHTDGKVTPTAKSHHSAGQVTPTVKSHQPSSHTDGKVTATVKSHQPSSHTDGKVILTAKSQRRSSHTNCQRGHAPRLPALPGAPLKCRTPRFWEQRCSPPLPLQLSPLHQHS", "length": 204, "header": "tr|A0A5G2QWU3-1|A0A5G2QWU3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QWU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3/entry", "sequence": { "sequence": "MTAKSQRRSSHTDRQVTPTIKSHRWQSHSDGQVTPMVKSHRWQSHSDGQVTLTVRSHRPSSHTDGKVTPTAKSQRRHSDGQVTPTVRSHRPSSHTDGKVTPTAKSHHSAGQVTPTVKSHQPSSHTDGKVTATVKSHQPSSHTDGKVILTAKSQRRSSHTNCQRGHAPRLPALPGAPLKCRTPRFWEQRCSPPLPLQLSPLHQHS", "length": 204, "header": "tr|A0A5G2QWU3-1|A0A5G2QWU3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QWU3-1" }, "locus": { "chromosome": "17", "start_pos": 61152701, "end_pos": 61151532, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084597.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084597.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062654.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062654.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWU3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 204, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWU3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWY1-1", "uniprot_ac": "A0A5G2QWY1", "uniprot_id": "A0A5G2QWY1_PIG", "mass": { "chemical_mass": 50723.0, "monoisotopic_mass": 50723.0 }, "refseq": { "ac": "XP_003129043", "name": "putative tripartite motif-containing protein 75", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129043" }, "gene_names": [ { "name": "LOC100513415", "type": "synonym", "evidence": [ { "id": "XP_003129043", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129043" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QWY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1/entry#names_and_taxonomy" } ] }, { "name": "putative tripartite motif-containing protein 75", "type": "synonym", "evidence": [ { "id": "XP_003129043", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129043" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QWY1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051162", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051162", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15829", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15829", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16607", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16607", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513415", "url": "https://www.ncbi.nlm.nih.gov/gene/100513415", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513415", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513415", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QWY1", "url": "https://www.orthodb.org/?gene=A0A5G2QWY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129043", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129043", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVAAALAGLQAEAKCPICLDSLHDPVTIQCGHNFCRRCIQRSWAELEDTFPCPMCRHPCLEPHVRSNTQLGRMIEVARLLHSSRSSSKMSQQPHLCEWHNQVLSLFCENDLEVLCPLCAQTPSHQGHVMRSVAEAAADHLQKVSSYVEPLKRQVAETQGLLAMQDIKLLELQEQVQHRQLELASEVRQMSRAVDHEQELVLARLVQEEHNIHEQLVTNIAAFSGHIWELWGLLQEMREQSCSFSPQYSVLQKIAQKFTEDVILDPETAHPNLLVSEDRKSATFMRMRQMVLKAGRFRLEPAVLGSVGFGHGRRYWEVRVDGATWAVGVCMDTAPRARSRHMEGQSCYWTVGQRRGDYQAWGPAGILPLELKEDPCGIGVYLDYELGVISFYNLKDRSHIHSFTDSFSGVLKPYFCVGCDSRPRTLSSVIEHEGASVTLPPFLPEVYGQ", "length": 449, "header": "tr|A0A5G2QWY1-1|A0A5G2QWY1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWY1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1/entry", "sequence": { "sequence": "MAVAAALAGLQAEAKCPICLDSLHDPVTIQCGHNFCRRCIQRSWAELEDTFPCPMCRHPCLEPHVRSNTQLGRMIEVARLLHSSRSSSKMSQQPHLCEWHNQVLSLFCENDLEVLCPLCAQTPSHQGHVMRSVAEAAADHLQKVSSYVEPLKRQVAETQGLLAMQDIKLLELQEQVQHRQLELASEVRQMSRAVDHEQELVLARLVQEEHNIHEQLVTNIAAFSGHIWELWGLLQEMREQSCSFSPQYSVLQKIAQKFTEDVILDPETAHPNLLVSEDRKSATFMRMRQMVLKAGRFRLEPAVLGSVGFGHGRRYWEVRVDGATWAVGVCMDTAPRARSRHMEGQSCYWTVGQRRGDYQAWGPAGILPLELKEDPCGIGVYLDYELGVISFYNLKDRSHIHSFTDSFSGVLKPYFCVGCDSRPRTLSSVIEHEGASVTLPPFLPEVYGQ", "length": 449, "header": "tr|A0A5G2QWY1-1|A0A5G2QWY1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QWY1-1" }, "locus": { "chromosome": "8", "start_pos": 44147246, "end_pos": 44145900, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079579.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079579.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062695.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062695.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513415", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513415", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWY1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 449, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWY1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWY1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 133, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 242, "end_pos": 433, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QWY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWY1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 57, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QWZ6-1", "uniprot_ac": "A0A5G2QWZ6", "uniprot_id": "A0A5G2QWZ6_PIG", "mass": { "chemical_mass": 11103.0, "monoisotopic_mass": 11103.0 }, "refseq": {}, "gene_names": [ { "name": "TRBV3-1", "type": "recommended", "evidence": [ { "id": "A0A5G2QWZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ] } ], "protein_names": [ { "name": "T cell receptor beta variable 3-1", "type": "synonym", "evidence": [ { "id": "A0A5G2QWZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRBV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6", "locus": { "chromosome": "18", "start_pos": 7669043, "end_pos": 7669327, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000047566", "url": "https://www.ensembl.org/id/ENSSSCG00000047566" } ] } } ], "crossref": [ { "id": "A0A5G2QWZ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047566", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047566", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HISSAKX", "url": "https://omabrowser.org/oma/group/HISSAKX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23268:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23268:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DTAVFQTPKYLIIQTRNKRSLKCEQKLSHDSMYWYKQGFKQLLEIMFIYNNKELILNETVPRRFLPESPDKAHLYLHIDSLEPGDSAVYFCASS", "length": 94, "header": "tr|A0A5G2QWZ6-1|A0A5G2QWZ6_PIG Isoform 1 of T cell receptor beta variable 3-1 OS=Sus scrofa OX=9823 GN=TRBV3-1 PE=4 SV=1 CANONICAL=A0A5G2QWZ6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6/entry", "sequence": { "sequence": "DTAVFQTPKYLIIQTRNKRSLKCEQKLSHDSMYWYKQGFKQLLEIMFIYNNKELILNETVPRRFLPESPDKAHLYLHIDSLEPGDSAVYFCASS", "length": 94, "header": "tr|A0A5G2QWZ6-1|A0A5G2QWZ6_PIG Isoform 1 of T cell receptor beta variable 3-1 OS=Sus scrofa OX=9823 GN=TRBV3-1 PE=4 SV=1 CANONICAL=A0A5G2QWZ6-1" }, "locus": { "chromosome": "18", "start_pos": 7669327, "end_pos": 7669046, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069631.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069631.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062710.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5I2-1", "protein_name": "T cell receptor beta, variable 10", "gene_name": "Trbv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGCRLLSCVAFCLLGIGPLETAVFQTPNYHVTQVGNEVSFNCKQTLGHDTMYWYKQDSKKLLKIMFSYNNKQLIVNETVPRRFSPQSSDKAHLNLRIKSVEPEDSAVYLCASS", "length": 113 }, "evidence": [ { "id": "A0A5G2QWZ6", "url": "https://omabrowser.org/oma/group/A0A5G2QWZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A576-1", "protein_name": "T cell receptor beta variable 3-1", "gene_name": "TRBV3-1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGCRLLCCVVFCLLQAGPLDTAVSQTPKYLVTQMGNDKSIKCEQNLGHDTMYWYKQDSKKFLKIMFSYNNKELIINETVPNRFSPKSPDKAHLNLHINSLELGDSAVYFCASSQ", "length": 114 }, "evidence": [ { "id": "A0A5G2QWZ6", "url": "https://omabrowser.org/oma/group/A0A5G2QWZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QWZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 94, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QWZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QWZ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QWZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWZ6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 94, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QX66-1", "uniprot_ac": "A0A5G2QX66", "uniprot_id": "A0A5G2QX66_PIG", "mass": { "chemical_mass": 6293.0, "monoisotopic_mass": 6293.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QX66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66", "locus": {} } ], "crossref": [ { "id": "A0A5G2QX66", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QX66", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048870", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048870", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QX66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPGSRSPNPHEIKHQLDLGVTGRAEVTRELRVHIYLPFCVAPQTFCTFLQGCPSQ", "length": 56, "header": "tr|A0A5G2QX66-1|A0A5G2QX66_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QX66-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QX66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66/entry", "sequence": { "sequence": "MEPGSRSPNPHEIKHQLDLGVTGRAEVTRELRVHIYLPFCVAPQTFCTFLQGCPSQ", "length": 56, "header": "tr|A0A5G2QX66-1|A0A5G2QX66_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QX66-1" }, "locus": { "chromosome": "3", "start_pos": 17732371, "end_pos": 17731954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088285.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088285.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062780.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062780.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QX66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 56, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QX66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QX66" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QX73-1", "uniprot_ac": "A0A5G2QX73", "uniprot_id": "A0A5G2QX73_PIG", "mass": { "chemical_mass": 26325.0, "monoisotopic_mass": 26325.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LINE-1 retrotransposable element ORF1 protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QX73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73/entry#names_and_taxonomy" } ] }, { "name": "LINE retrotransposable element 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QX73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73/entry#names_and_taxonomy" } ] }, { "name": "LINE1 retrotransposable element 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QX73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Nucleic acid-binding protein which is essential for retrotransposition of LINE-1 elements in the genome. Functions as a nucleic acid chaperone binding its own transcript and therefore preferentially mobilizing the transcript from which they are encoded.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73#function" }, { "database": "UniProtKB", "id": "ARBA00060281", "url": "https://www.uniprot.org/uniprotkb/ARBA00060281#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73", "locus": {} } ], "crossref": [ { "id": "A0A5G2QX73", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QX73", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051054", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051054", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MREKGKPPENQLSNEEIFSLQEKDFRLLMLKMMQDIGNKLEAKMDNLQRTLSKEIQDIKLKQEEMQNTITEIKNLLEAANSRIQEAEERISEAEDRLVEIMGAEQKREKRLKTNEESLRELWDNVKCTNIHIIGVPEGEEREKETEKIFQQIVAKNFPNMGKESLTQIQEARVLYKINPRRNTLRHILIKLTKIKDKEKILKAAREKKQITCKGTPIRLLADFS", "length": 224, "header": "tr|A0A5G2QX73-1|A0A5G2QX73_PIG Isoform 1 of LINE-1 retrotransposable element ORF1 protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QX73-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QX73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73/entry", "sequence": { "sequence": "MREKGKPPENQLSNEEIFSLQEKDFRLLMLKMMQDIGNKLEAKMDNLQRTLSKEIQDIKLKQEEMQNTITEIKNLLEAANSRIQEAEERISEAEDRLVEIMGAEQKREKRLKTNEESLRELWDNVKCTNIHIIGVPEGEEREKETEKIFQQIVAKNFPNMGKESLTQIQEARVLYKINPRRNTLRHILIKLTKIKDKEKILKAAREKKQITCKGTPIRLLADFS", "length": 224, "header": "tr|A0A5G2QX73-1|A0A5G2QX73_PIG Isoform 1 of LINE-1 retrotransposable element ORF1 protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QX73-1" }, "locus": { "chromosome": "14", "start_pos": 106695214, "end_pos": 106694543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073309.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073309.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062790.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062790.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QX73-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 224, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QX73-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QX73" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QX73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 222, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QX73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX73" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 123, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXB5-1", "uniprot_ac": "A0A5G2QXB5", "uniprot_id": "A0A5G2QXB5_PIG", "mass": { "chemical_mass": 8867.0, "monoisotopic_mass": 8867.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXB5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050662", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050662", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QXB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLMSESVLPMFSSRSLMVSCRIFKSFIHLEFIFVHGVRVCSSFIALHVAVQVSQQCLLKRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A5G2QXB5-1|A0A5G2QXB5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXB5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5/entry", "sequence": { "sequence": "MMLMSESVLPMFSSRSLMVSCRIFKSFIHLEFIFVHGVRVCSSFIALHVAVQVSQQCLLKRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A5G2QXB5-1|A0A5G2QXB5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXB5-1" }, "locus": { "chromosome": "13", "start_pos": 173709801, "end_pos": 173709571, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073013.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073013.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062836.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXB5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXB5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 77, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXB5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXB5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXC0-1", "uniprot_ac": "A0A5G2QXC0", "uniprot_id": "A0A5G2QXC0_PIG", "mass": { "chemical_mass": 9688.0, "monoisotopic_mass": 9688.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXC0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044413", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044413", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QXC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SLPGEINSLTTIYPVFELSYNLEFRCSLLAADPGPLLLSVPGAPVAPSVHRRGGSRVVATSWIMSRSSRVSGSPPPFRQISNSSQQVASSF", "length": 91, "header": "tr|A0A5G2QXC0-1|A0A5G2QXC0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXC0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0/entry", "sequence": { "sequence": "SLPGEINSLTTIYPVFELSYNLEFRCSLLAADPGPLLLSVPGAPVAPSVHRRGGSRVVATSWIMSRSSRVSGSPPPFRQISNSSQQVASSF", "length": 91, "header": "tr|A0A5G2QXC0-1|A0A5G2QXC0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXC0-1" }, "locus": { "chromosome": "5", "start_pos": 44334764, "end_pos": 44334021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080244.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080244.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062841.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062841.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 91, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXC0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXE0-1", "uniprot_ac": "A0A5G2QXE0", "uniprot_id": "A0A5G2QXE0_PIG", "mass": { "chemical_mass": 92012.0, "monoisotopic_mass": 92012.0 }, "refseq": { "ac": "XP_020934011", "name": "FAST kinase domain-containing protein 5, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934011" }, "gene_names": [ { "name": "FASTKD5", "type": "recommended", "evidence": [ { "id": "A0A5G2QXE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ] }, { "name": "FASTKD5", "type": "synonym", "evidence": [ { "id": "XP_020934011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934011" } ] } ], "protein_names": [ { "name": "FAST kinase domain-containing protein 5, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_020934011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934011" } ] }, { "name": "FAST kinase domains 5", "type": "synonym", "evidence": [ { "id": "A0A5G2QXE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FASTKD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0", "locus": { "chromosome": "17", "start_pos": 32533813, "end_pos": 32520654, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000045134", "url": "https://www.ensembl.org/id/ENSSSCG00000045134" } ] } } ], "crossref": [ { "id": "ENSSSCG00000045134", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045134", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102167168", "url": "https://www.ncbi.nlm.nih.gov/gene/102167168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102167168", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXE0", "url": "https://www.orthodb.org/?gene=A0A5G2QXE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228:SF70", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228:SF70", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934011", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALVICRRFPGSFCGTPSCPALIKNHINKKLLDQTCEDCVLTAKMIGTDTRMAATLKLLKPLRYRAFCSPFACSATQSVVSWNVGSCTWHKRQDSPENSLCHPLRKVNMCSTSASWRSLTTSRTLPGLEFSRASASKASTLKLGSPRAGRVGEEDIETFDSFEDPRIFLQLRPEYQLHSYNRSETCQPLSVSEGELILSKVTIYQDNLQPQIIVDYFCKLSSLPAEQHPVLLSSASFAVLCQLSVKNVQLFDVPDLISILKAFVTLGIPHSHSMLDVFETRFCHKVWEMSLDQLLLVADLWRNLGRRVPRFFKIFFSYLNLHWKDLSLTQLIHLIYIIGESRQAPQELMQKLESLILKYIDLINLEEVGTICLGFFKSSSSLSEFVMRKIGDIACADMQHLSSYALVNILKMFRFTHVDHVNFMKQFGQIAPQRIPSLGVQGVMHLTLACSALRILDEGVMNAVAASLPPRVAHCRSKDVAKILWSFGTLNYKPPNTEEFYSSLIDEIPRKMPEFNRYPEHLLTCLLGLAFSEYFPTELIDFALSPGFVRLAQERSKFEVTKELYTLDGTVGIECPDYRGNRLSSDLQQEGSEMLWNLAKKDMSAKPEFLEALFLLQTMLGGPQYIKHHMILPHTRSSDLEVQLDVNMKPLPFNREATPIEDVAQLRLKHVGISLTDDLMSQLLQGRARGHSQRETESDTGQQPMKLEAASIPVGGSFCNMADRLGAMEMAGPCPPASVQAPKLKLAIQLTNKNQYCYGSRHLLGLHNMKRRQLNQLGYRVVELSHWDWLPLLRRTRLEKLAFLHEKVFTSAL", "length": 813, "header": "tr|A0A5G2QXE0-1|A0A5G2QXE0_PIG Isoform 1 of FAST kinase domains 5 OS=Sus scrofa OX=9823 GN=FASTKD5 PE=4 SV=1 CANONICAL=A0A5G2QXE0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0/entry", "sequence": { "sequence": "MALVICRRFPGSFCGTPSCPALIKNHINKKLLDQTCEDCVLTAKMIGTDTRMAATLKLLKPLRYRAFCSPFACSATQSVVSWNVGSCTWHKRQDSPENSLCHPLRKVNMCSTSASWRSLTTSRTLPGLEFSRASASKASTLKLGSPRAGRVGEEDIETFDSFEDPRIFLQLRPEYQLHSYNRSETCQPLSVSEGELILSKVTIYQDNLQPQIIVDYFCKLSSLPAEQHPVLLSSASFAVLCQLSVKNVQLFDVPDLISILKAFVTLGIPHSHSMLDVFETRFCHKVWEMSLDQLLLVADLWRNLGRRVPRFFKIFFSYLNLHWKDLSLTQLIHLIYIIGESRQAPQELMQKLESLILKYIDLINLEEVGTICLGFFKSSSSLSEFVMRKIGDIACADMQHLSSYALVNILKMFRFTHVDHVNFMKQFGQIAPQRIPSLGVQGVMHLTLACSALRILDEGVMNAVAASLPPRVAHCRSKDVAKILWSFGTLNYKPPNTEEFYSSLIDEIPRKMPEFNRYPEHLLTCLLGLAFSEYFPTELIDFALSPGFVRLAQERSKFEVTKELYTLDGTVGIECPDYRGNRLSSDLQQEGSEMLWNLAKKDMSAKPEFLEALFLLQTMLGGPQYIKHHMILPHTRSSDLEVQLDVNMKPLPFNREATPIEDVAQLRLKHVGISLTDDLMSQLLQGRARGHSQRETESDTGQQPMKLEAASIPVGGSFCNMADRLGAMEMAGPCPPASVQAPKLKLAIQLTNKNQYCYGSRHLLGLHNMKRRQLNQLGYRVVELSHWDWLPLLRRTRLEKLAFLHEKVFTSAL", "length": 813, "header": "tr|A0A5G2QXE0-1|A0A5G2QXE0_PIG Isoform 1 of FAST kinase domains 5 OS=Sus scrofa OX=9823 GN=FASTKD5 PE=4 SV=1 CANONICAL=A0A5G2QXE0-1" }, "locus": { "chromosome": "17", "start_pos": 32532528, "end_pos": 32530090, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071942.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071942.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060814.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060814.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 16, "start_aa": "Thr", "end_pos": 16, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr16", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102167168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102167168", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial RNA processing", "id": "GO:0000963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000963", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" }, { "name": "regulation of mitochondrial mRNA stability", "id": "GO:0044528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044528", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" }, { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" }, { "name": "ribonucleoprotein granule", "id": "GO:0035770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035770", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE0" }, { "id": "PS51286", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51286" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAP", "eco_id": "ECO_0000259", "start_pos": 746, "end_pos": 806, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 16 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXE6-1", "uniprot_ac": "A0A5G2QXE6", "uniprot_id": "A0A5G2QXE6_PIG", "mass": { "chemical_mass": 10273.0, "monoisotopic_mass": 10273.0 }, "refseq": {}, "gene_names": [ { "name": "SMIM9", "type": "recommended", "evidence": [ { "id": "A0A5G2QXE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 9", "type": "synonym", "evidence": [ { "id": "A0A5G2QXE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6", "locus": { "chromosome": "X", "start_pos": 125255157, "end_pos": 125259938, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055917", "url": "https://www.ensembl.org/id/ENSSSCG00000055917" } ] } } ], "crossref": [ { "id": "A0A5G2QXE6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044704", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044704", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR038853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR41687", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41687", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41687:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41687:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27958", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27958", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPRPLSGGLLLCSLSCLLLETGASSLSPLSAFGIQDGAGLKPRSREKPRSGLSPFADYLGDLIRNSIPPAAVFAFLISSAIMGSLCCLTILIGEPVQ", "length": 99, "header": "tr|A0A5G2QXE6-1|A0A5G2QXE6_PIG Isoform 1 of Small integral membrane protein 9 OS=Sus scrofa OX=9823 GN=SMIM9 PE=4 SV=1 CANONICAL=A0A5G2QXE6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6/entry", "sequence": { "sequence": "MEPPRPLSGGLLLCSLSCLLLETGASSLSPLSAFGIQDGAGLKPRSREKPRSGLSPFADYLGDLIRNSIPPAAVFAFLISSAIMGSLCCLTILIGEPVQ", "length": 99, "header": "tr|A0A5G2QXE6-1|A0A5G2QXE6_PIG Isoform 1 of Small integral membrane protein 9 OS=Sus scrofa OX=9823 GN=SMIM9 PE=4 SV=1 CANONICAL=A0A5G2QXE6-1" }, "locus": { "chromosome": "X", "start_pos": 125259910, "end_pos": 125255275, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097261.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097261.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078220.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078220.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 99, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXE6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXF4-1", "uniprot_ac": "A0A5G2QXF4", "uniprot_id": "A0A5G2QXF4_PIG", "mass": { "chemical_mass": 31349.0, "monoisotopic_mass": 31349.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM202", "type": "recommended", "evidence": [ { "id": "A0A5G2QXF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4" } ] } ], "protein_names": [ { "name": "Transmembrane protein 202", "type": "recommended", "evidence": [ { "id": "A0A5G2QXF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM202", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4", "locus": { "chromosome": "7", "start_pos": 60854316, "end_pos": 60885284, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001926", "url": "https://www.ensembl.org/id/ENSSSCG00000001926" } ] } } ], "crossref": [ { "id": "A0A5G2QXF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001926", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001926", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR050579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10671:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10671:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI41", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEREEQVTFTFYNPEVPKVKGNRNYRRPTLPTNKHPSASMPPERRQQHVDQTHAYIRMFCSGLCGFSLLMLIFVSPLNWVQLLVIKNGLELYAGLWISCDHELCWSHTPKPPYYLQYSRAFFLISVFTILVVLVWLLRSCLPKRESMAANLDLKVSVLTFISAICLLLCLILFLAQVREHTRGAMESNLLWTYYLTWGSDLLYTFAGILFFLNYITSRAPPLDQNVSAVPIEKSRLGIGPVTTVSPAEDEELRSPIESTSERETKLPSAELRR", "length": 273, "header": "tr|A0A5G2QXF4-1|A0A5G2QXF4_PIG Isoform 1 of Transmembrane protein 202 OS=Sus scrofa OX=9823 GN=TMEM202 PE=4 SV=1 CANONICAL=A0A5G2QXF4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4/entry", "sequence": { "sequence": "MEREEQVTFTFYNPEVPKVKGNRNYRRPTLPTNKHPSASMPPERRQQHVDQTHAYIRMFCSGLCGFSLLMLIFVSPLNWVQLLVIKNGLELYAGLWISCDHELCWSHTPKPPYYLQYSRAFFLISVFTILVVLVWLLRSCLPKRESMAANLDLKVSVLTFISAICLLLCLILFLAQVREHTRGAMESNLLWTYYLTWGSDLLYTFAGILFFLNYITSRAPPLDQNVSAVPIEKSRLGIGPVTTVSPAEDEELRSPIESTSERETKLPSAELRR", "length": 273, "header": "tr|A0A5G2QXF4-1|A0A5G2QXF4_PIG Isoform 1 of Transmembrane protein 202 OS=Sus scrofa OX=9823 GN=TMEM202 PE=4 SV=1 CANONICAL=A0A5G2QXF4-1" }, "locus": { "chromosome": "7", "start_pos": 60865552, "end_pos": 60854316, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073371.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073371.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069556.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069556.1" } ] } }, { "isoform_ac": "A0A8W4FI41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI41/entry", "sequence": { "sequence": "MPCFILLRGDYLQYSRAFFLISVFTILVVLVWLLRSCLPKRESMAANLDLKVSVLTFISAICLLLCLILFLAQVREHTRGAMESNLLWTYYLTWGSDLLYTFAGILFFLNYITSRAPPLDQNVSAVPIEKSRLGIGPVTTVSPAEDEELRSPIESTSERETKLPSAELRR", "length": 170, "header": "tr|A0A8W4FI41-1|A0A8W4FI41_PIG Computationally mapped isoform of Transmembrane protein 202 OS=Sus scrofa OX=9823 GN=TMEM202 PE=4 SV=1 CANONICAL=A0A5G2QXF4-1" }, "locus": { "chromosome": "7", "start_pos": 60884441, "end_pos": 60854316, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095261.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095261.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077983.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXF4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 273, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXF4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXF4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 225, "end_pos": 227 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXI0-1", "uniprot_ac": "A0A5G2QXI0", "uniprot_id": "A0A5G2QXI0_PIG", "mass": { "chemical_mass": 8803.0, "monoisotopic_mass": 8803.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXI0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2QXI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLLFMSESVWPMFSSKSFIVSGLISRSLIHLEFIFVYGVRECSNFILFHVAVQFSQHHLLRGLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QXI0-1|A0A5G2QXI0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXI0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0/entry", "sequence": { "sequence": "MLLLFMSESVWPMFSSKSFIVSGLISRSLIHLEFIFVYGVRECSNFILFHVAVQFSQHHLLRGLSFLHCIFLPPLS", "length": 76, "header": "tr|A0A5G2QXI0-1|A0A5G2QXI0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXI0-1" }, "locus": { "chromosome": "18", "start_pos": 34107430, "end_pos": 34107203, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087814.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087814.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066644.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066644.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 76, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXI4-1", "uniprot_ac": "A0A5G2QXI4", "uniprot_id": "A0A5G2QXI4_PIG", "mass": { "chemical_mass": 18279.0, "monoisotopic_mass": 18279.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049910", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049910", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QXI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLYTDFHTGCISLHSRQQCRRVPFSPHPLKHLLSVDLLMMAILTGVRWYLMIVLICISLVISDEHFFMCLLAICISSLEKCLFRSFVHFSIGLLAFLLVSCISCLYILEIKPLSVASFETFFSHSVSCLFGFLCCAKACQFD", "length": 161, "header": "tr|A0A5G2QXI4-1|A0A5G2QXI4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXI4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLYTDFHTGCISLHSRQQCRRVPFSPHPLKHLLSVDLLMMAILTGVRWYLMIVLICISLVISDEHFFMCLLAICISSLEKCLFRSFVHFSIGLLAFLLVSCISCLYILEIKPLSVASFETFFSHSVSCLFGFLCCAKACQFD", "length": 161, "header": "tr|A0A5G2QXI4-1|A0A5G2QXI4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXI4-1" }, "locus": { "chromosome": "11", "start_pos": 46211419, "end_pos": 46210937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079160.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079160.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066649.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066649.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXI4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 161, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXI4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXI5-1", "uniprot_ac": "A0A5G2QXI5", "uniprot_id": "A0A5G2QXI5_PIG", "mass": { "chemical_mass": 29683.0, "monoisotopic_mass": 29683.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041018", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041018", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPKAVNNETDLCSLTDLDFKREIVKILKELREDMNRNADTLRKELENIRRSQEKLEHSFAEMQTELRAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNVKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGIPIRISADFSTETLQARREWQEIFKVLKGKKYAT", "length": 253, "header": "tr|A0A5G2QXI5-1|A0A5G2QXI5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QXI5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPKAVNNETDLCSLTDLDFKREIVKILKELREDMNRNADTLRKELENIRRSQEKLEHSFAEMQTELRAVKTRMNNAEERISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNVKDTGFKIQEAQRAPNKLNPNRPTPRHIIIKMAKVSDKERILKAAREKQNVTYKGIPIRISADFSTETLQARREWQEIFKVLKGKKYAT", "length": 253, "header": "tr|A0A5G2QXI5-1|A0A5G2QXI5_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QXI5-1" }, "locus": { "chromosome": "11", "start_pos": 64838522, "end_pos": 64837764, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075090.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075090.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 253, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 227, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QXI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 251, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QXI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI5" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 128, "start_aa": "Asn", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXI7-1", "uniprot_ac": "A0A5G2QXI7", "uniprot_id": "A0A5G2QXI7_PIG", "mass": { "chemical_mass": 27306.0, "monoisotopic_mass": 27306.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110255256", "type": "recommended", "evidence": [ { "id": "A0A5G2QXI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255256", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXI7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTYNACASQIFFIGLFGATEFFLLAAVSYDHCVAICKPLHYMSIMNGRVCTILILCCWTSGLMIIITPLSVGLQLEFCDSNAIDHFGCDASPLFKISCSDTWFIEQMVIICAVVTFIITLIGVVRSYRCIIRTILRFPSASQRKKAFSTCSSHMIVVSITYGSCIFIYIEPSAKEEVDINKGASVLTTSIAPLLNPFIYTLRNKQVKQAFNDTIKKIAFTLHKSKLNQMKMIDLLLNIFSKDPN", "length": 244, "header": "tr|A0A5G2QXI7-1|A0A5G2QXI7_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255256 PE=3 SV=1 CANONICAL=A0A5G2QXI7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7/entry", "sequence": { "sequence": "MTYNACASQIFFIGLFGATEFFLLAAVSYDHCVAICKPLHYMSIMNGRVCTILILCCWTSGLMIIITPLSVGLQLEFCDSNAIDHFGCDASPLFKISCSDTWFIEQMVIICAVVTFIITLIGVVRSYRCIIRTILRFPSASQRKKAFSTCSSHMIVVSITYGSCIFIYIEPSAKEEVDINKGASVLTTSIAPLLNPFIYTLRNKQVKQAFNDTIKKIAFTLHKSKLNQMKMIDLLLNIFSKDPN", "length": 244, "header": "tr|A0A5G2QXI7-1|A0A5G2QXI7_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255256 PE=3 SV=1 CANONICAL=A0A5G2QXI7-1" }, "locus": { "chromosome": "AEMK02000173.1", "start_pos": 48564, "end_pos": 47833, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086017.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086017.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069591.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXI7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 244, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXI7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXI7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 199, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXJ3-1", "uniprot_ac": "A0A5G2QXJ3", "uniprot_id": "A0A5G2QXJ3_PIG", "mass": { "chemical_mass": 73836.0, "monoisotopic_mass": 73836.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100514433", "type": "recommended", "evidence": [ { "id": "A0A5G2QXJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3" } ] } ], "protein_names": [ { "name": "Nuclear Testis protein N-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100514433", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXJ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043890", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043890", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22879:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22879:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12881", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12881", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "FSGCPHFPLLGAGRGRTPGSLYSHDPCHMSRPGPQHLPPPMAPLLLPGSTLLQPAHPMTPRVTPADHGPIAPGLGNIPVPVWSGGRSALPHQSQAFGRPQAPLNGNASRALMGSALCPAPLCIASPVGDSGVAAPAIAAAQAGKGGLAPGLPPQAAPPAAQMAFILPPGSSGPWPHGTSGAGSLHASQHTGPQEDASHHKSPTSWECFHRRWQRFKSLARSHLPQSPDAEALSCFLIPVLRTLARLKPTMTLEEGMRQAMQEWQHMSTVERMAFYEMAAKFMQFEAEDEIRMGNVSCTTWAQGMPPPAPPKLAPQEPTSRKRGTQSVNHLPLDVKAQVREHTHPRPRRAWQLLENKAPKEIPPEARREHGDIPQALVGPGPSATGESDMECREDGYELPQDEDGCFPDPDLLSYVDKLCSQEDFDTKVEAVIHPRFLAELLSPEPELDLSGLAEELQQEEGLSPEELVQTQVLALEEDDGVPATPNHRAPHLDSRPSESVAQQDAQRNEQGPQPGAPQTDRGLFRHKGSVPSPGYQEPPQAGTAQPFPHQGTKRSGPPSGPRASKVLREASPLSGAPGLGHGFSEDEEELPSLAFLLGLHHSLLPWGLPQSPVPASGLVCTAGQRAQQASQAPFPQRMGLSSGPLEAAKSRKRAQCGGLAAAEELGMESCFCAVQPSGHSPVMRMEAGGSPYL", "length": 693, "header": "tr|A0A5G2QXJ3-1|A0A5G2QXJ3_PIG Isoform 1 of Nuclear Testis protein N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100514433 PE=3 SV=1 CANONICAL=A0A5G2QXJ3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3/entry", "sequence": { "sequence": "FSGCPHFPLLGAGRGRTPGSLYSHDPCHMSRPGPQHLPPPMAPLLLPGSTLLQPAHPMTPRVTPADHGPIAPGLGNIPVPVWSGGRSALPHQSQAFGRPQAPLNGNASRALMGSALCPAPLCIASPVGDSGVAAPAIAAAQAGKGGLAPGLPPQAAPPAAQMAFILPPGSSGPWPHGTSGAGSLHASQHTGPQEDASHHKSPTSWECFHRRWQRFKSLARSHLPQSPDAEALSCFLIPVLRTLARLKPTMTLEEGMRQAMQEWQHMSTVERMAFYEMAAKFMQFEAEDEIRMGNVSCTTWAQGMPPPAPPKLAPQEPTSRKRGTQSVNHLPLDVKAQVREHTHPRPRRAWQLLENKAPKEIPPEARREHGDIPQALVGPGPSATGESDMECREDGYELPQDEDGCFPDPDLLSYVDKLCSQEDFDTKVEAVIHPRFLAELLSPEPELDLSGLAEELQQEEGLSPEELVQTQVLALEEDDGVPATPNHRAPHLDSRPSESVAQQDAQRNEQGPQPGAPQTDRGLFRHKGSVPSPGYQEPPQAGTAQPFPHQGTKRSGPPSGPRASKVLREASPLSGAPGLGHGFSEDEEELPSLAFLLGLHHSLLPWGLPQSPVPASGLVCTAGQRAQQASQAPFPQRMGLSSGPLEAAKSRKRAQCGGLAAAEELGMESCFCAVQPSGHSPVMRMEAGGSPYL", "length": 693, "header": "tr|A0A5G2QXJ3-1|A0A5G2QXJ3_PIG Isoform 1 of Nuclear Testis protein N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100514433 PE=3 SV=1 CANONICAL=A0A5G2QXJ3-1" }, "locus": { "chromosome": "AEMK02000472.1", "start_pos": 50092, "end_pos": 43363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082970.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082970.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068865.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068865.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 63, "start_aa": "Thr", "end_pos": 63, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr63", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXJ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 693, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXJ3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXJ3" }, { "id": "PF12881", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12881" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nuclear Testis protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 664, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 63 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 294, "end_pos": 296 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXL0-1", "uniprot_ac": "A0A5G2QXL0", "uniprot_id": "A0A5G2QXL0_PIG", "mass": { "chemical_mass": 32865.0, "monoisotopic_mass": 32865.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Sulfatase N-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXL0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043796", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043796", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42693:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42693:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1663150", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1663150", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QGKVLRTCSLFQGGTKPPETLLFCLSWVCFHLDTCRSQVVKDEKPNIVLVMVDDLGIGDLGCYGNNTLRTPHVDRLAREGVQLTQHISAASMCTPSRSAFLTGRYPIRSGMTSNRISRVITSLGVPAGLPLNETTFAALLKKQGYHTAIIGKWHQGLNCHSRNDHCHHPSNYGFDYFYGMPFTLVAPCWPDPSRQTELAIASRIWLFVQLIAVAVLTLALGKLSGWISVPWFLILVMVLFIFLLGYFWFSSFHSSLYWDCLLLREHKITEQPMKAERAGSIMLKEALSFLER", "length": 292, "header": "tr|A0A5G2QXL0-1|A0A5G2QXL0_PIG Isoform 1 of Sulfatase N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QXL0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0/entry", "sequence": { "sequence": "QGKVLRTCSLFQGGTKPPETLLFCLSWVCFHLDTCRSQVVKDEKPNIVLVMVDDLGIGDLGCYGNNTLRTPHVDRLAREGVQLTQHISAASMCTPSRSAFLTGRYPIRSGMTSNRISRVITSLGVPAGLPLNETTFAALLKKQGYHTAIIGKWHQGLNCHSRNDHCHHPSNYGFDYFYGMPFTLVAPCWPDPSRQTELAIASRIWLFVQLIAVAVLTLALGKLSGWISVPWFLILVMVLFIFLLGYFWFSSFHSSLYWDCLLLREHKITEQPMKAERAGSIMLKEALSFLER", "length": 292, "header": "tr|A0A5G2QXL0-1|A0A5G2QXL0_PIG Isoform 1 of Sulfatase N-terminal domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QXL0-1" }, "locus": { "chromosome": "Y", "start_pos": 6674294, "end_pos": 6660951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079788.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079788.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069660.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069660.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "R-SSC-1663150", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1663150", "resource": "Reactome", "description": "The activation of arylsulfatases" }, { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0" } ], "pmid": "" }, { "name": "arylsulfatase activity", "id": "GO:0004065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004065", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXL0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXL0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXL0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL0" }, { "id": "PF00884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfatase N-terminal", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 179, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXQ3-1", "uniprot_ac": "A0A5G2QXQ3", "uniprot_id": "A0A5G2QXQ3_PIG", "mass": { "chemical_mass": 45623.0, "monoisotopic_mass": 45623.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Reverse transcriptase domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXQ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043491", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043491", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCLNLQDHQEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQMDNLTLHLNELGKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAISIKLPMTVFTELEQTIQTFIWNNKTPRIAKAILRNKNQAGGITLPDIKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKTIEIRAKINPWDLIKLKSFCTAKETKKKTKR", "length": 387, "header": "tr|A0A5G2QXQ3-1|A0A5G2QXQ3_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXQ3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3/entry", "sequence": { "sequence": "MKCLNLQDHQEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQMDNLTLHLNELGKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAISIKLPMTVFTELEQTIQTFIWNNKTPRIAKAILRNKNQAGGITLPDIKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKTIEIRAKINPWDLIKLKSFCTAKETKKKTKR", "length": 387, "header": "tr|A0A5G2QXQ3-1|A0A5G2QXQ3_PIG Isoform 1 of Reverse transcriptase domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXQ3-1" }, "locus": { "chromosome": "9", "start_pos": 99055764, "end_pos": 99052440, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068100.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068100.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066724.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066724.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXQ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 387, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXQ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXQ3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXQ4-1", "uniprot_ac": "A0A5G2QXQ4", "uniprot_id": "A0A5G2QXQ4_PIG", "mass": { "chemical_mass": 99239.0, "monoisotopic_mass": 99239.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QXQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QXQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051791", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051791", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHTKKIIHHDQVGFILDGSQGWFNIRKSISIIHPINKEKVKNHMIISIDAEKAFDKVQHPFMIKTLTKVGIEGTFLNIIKAIYDKPTANIILKGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYISNETLEKEYKNTIPFKIVPHKIKYLRIHLTKEAKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDVKKYYKATIIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWKTWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGRTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLKQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKRTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPLTDDWIWKMWYIYTMEYYSAIKKNDIMPFAETWMELENLILSEMSQKDKDKYHMISLITGI", "length": 846, "header": "tr|A0A5G2QXQ4-1|A0A5G2QXQ4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXQ4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYRPISLMNIDAKILNKILANRIQQHTKKIIHHDQVGFILDGSQGWFNIRKSISIIHPINKEKVKNHMIISIDAEKAFDKVQHPFMIKTLTKVGIEGTFLNIIKAIYDKPTANIILKGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYISNETLEKEYKNTIPFKIVPHKIKYLRIHLTKEAKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNHKRPRIAKAILRNKNQAGGITLPDVKKYYKATIIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWKTWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGRTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLKQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKRTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPLTDDWIWKMWYIYTMEYYSAIKKNDIMPFAETWMELENLILSEMSQKDKDKYHMISLITGI", "length": 846, "header": "tr|A0A5G2QXQ4-1|A0A5G2QXQ4_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXQ4-1" }, "locus": { "chromosome": "5", "start_pos": 50273817, "end_pos": 50272857, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075126.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075126.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069652.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069652.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXQ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 846, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXQ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXQ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ4" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 346, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 319, "end_pos": 321 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 696, "end_pos": 698 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXR6-1", "uniprot_ac": "A0A5G2QXR6", "uniprot_id": "A0A5G2QXR6_PIG", "mass": { "chemical_mass": 101993.0, "monoisotopic_mass": 101993.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QXR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QXR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXR6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049847", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049847", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDITEIPRIIRDYYMQLYANKTENLEEMDKFLEKHNLLRLNQDEIEKMNGPVTRTEIETVIKTLPTNKSPGPDGFTGKFYQTFKEELTPLLLKLFQKVVEEGTLPISFDEATITLIIKPDKDTTKKENYRPISLMNIDAKILSKILANHIQQYIKRIVHHDQVGFIPGMQGFFSIRKSISVIHHINKLKNKYHMIPSIDVEKSFDKIQHPFLIKTLQKVGITGTYLNVIKAIYDKPTVNIILNGEKLKEFPPRSGTRQGCPLSPLLFNIVLEVLAMVISDVKETKGIQIGKEEVKLSLFADDIILHLENPKDSTKKLLELICEFSKVAANKINTQKSTAFVYTNNERAEREIREAIPFTIASKRIKYLGVNLPKETKDLYSENYKPLMKEIKDDTNRWKDIPCSWIGRVNIIKMNILPMAIYRFNSIPIELPRTFFTELEQNILKFVWKHKRLRIAKDILKKKNGAGGIRLPHFRPYYKATIIKTVWYWHKGRHIDQWNRIESPEFNPHTYSQLIYDKGGRNIQCRKDSLFNKWCWENWTATWKRMKLEHSPTPYTKINSKWIKDLDVRPDTIKLLEETIGQTLSDINDSNIFSDPPIRVWTIKTKINKWDLIKLQSFCTAKETLNKTKRQPTEWENIFASESTDKGLISKIYKHLLQLHTKKTNNPINKWAEDLNRQFSKEDLQMAKKHMKRCSTPLIIRDMQIKTTLRYHLTPARMAIIQKSTNNKCWRGCGEKGTLVHSWWDCKLVQPLCKAVWRCLRKLNMELPFDPAIPLPGIYPEKTTTRKDTCTLMFTAALFAIAKTWKQPKCPSTEEWIQKMWSIYTMEYYSAIKMSEISAFLATWMDLGIIMLSEVSHTMRHQHQMLPLTCGV", "length": 872, "header": "tr|A0A5G2QXR6-1|A0A5G2QXR6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXR6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6/entry", "sequence": { "sequence": "MDITEIPRIIRDYYMQLYANKTENLEEMDKFLEKHNLLRLNQDEIEKMNGPVTRTEIETVIKTLPTNKSPGPDGFTGKFYQTFKEELTPLLLKLFQKVVEEGTLPISFDEATITLIIKPDKDTTKKENYRPISLMNIDAKILSKILANHIQQYIKRIVHHDQVGFIPGMQGFFSIRKSISVIHHINKLKNKYHMIPSIDVEKSFDKIQHPFLIKTLQKVGITGTYLNVIKAIYDKPTVNIILNGEKLKEFPPRSGTRQGCPLSPLLFNIVLEVLAMVISDVKETKGIQIGKEEVKLSLFADDIILHLENPKDSTKKLLELICEFSKVAANKINTQKSTAFVYTNNERAEREIREAIPFTIASKRIKYLGVNLPKETKDLYSENYKPLMKEIKDDTNRWKDIPCSWIGRVNIIKMNILPMAIYRFNSIPIELPRTFFTELEQNILKFVWKHKRLRIAKDILKKKNGAGGIRLPHFRPYYKATIIKTVWYWHKGRHIDQWNRIESPEFNPHTYSQLIYDKGGRNIQCRKDSLFNKWCWENWTATWKRMKLEHSPTPYTKINSKWIKDLDVRPDTIKLLEETIGQTLSDINDSNIFSDPPIRVWTIKTKINKWDLIKLQSFCTAKETLNKTKRQPTEWENIFASESTDKGLISKIYKHLLQLHTKKTNNPINKWAEDLNRQFSKEDLQMAKKHMKRCSTPLIIRDMQIKTTLRYHLTPARMAIIQKSTNNKCWRGCGEKGTLVHSWWDCKLVQPLCKAVWRCLRKLNMELPFDPAIPLPGIYPEKTTTRKDTCTLMFTAALFAIAKTWKQPKCPSTEEWIQKMWSIYTMEYYSAIKMSEISAFLATWMDLGIIMLSEVSHTMRHQHQMLPLTCGV", "length": 872, "header": "tr|A0A5G2QXR6-1|A0A5G2QXR6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXR6-1" }, "locus": { "chromosome": "15", "start_pos": 95455335, "end_pos": 95452720, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077977.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077977.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068937.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068937.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 626, "end_pos": 628, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 872, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR6" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 372, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 538, "end_pos": 540 }, { "start_pos": 588, "end_pos": 590 }, { "start_pos": 626, "end_pos": 628 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXS9-1", "uniprot_ac": "A0A5G2QXS9", "uniprot_id": "A0A5G2QXS9_PIG", "mass": { "chemical_mass": 102407.0, "monoisotopic_mass": 102407.0 }, "refseq": {}, "gene_names": [ { "name": "EFCAB13", "type": "recommended", "evidence": [ { "id": "A0A5G2QXS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ] } ], "protein_names": [ { "name": "EF-hand calcium binding domain 13", "type": "synonym", "evidence": [ { "id": "A0A5G2QXS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFCAB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9", "locus": { "chromosome": "12", "start_pos": 16596550, "end_pos": 16674982, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049121", "url": "https://www.ensembl.org/id/ENSSSCG00000049121" } ] } } ], "crossref": [ { "id": "A0A5G2QXS9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22656:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22656:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVCHLYTFFDEVSGEENIDLSDDGYTSFATDLASRNIDSKKYIKLSKTKEKRITPEIRGLSTEHQKMYETSMFLFEEEKSSDFSGERKVKKKRSLQVQLHTKRTEIPSLSVKEKMTRKENSSCKLPSQYDVHKTLSHLGTSSSIIRKNETLSNLYQTLYEEIPQGHFGSQELSALQKACKIFGKIRNGRIYVNDLPMIHHILKISISDTEMRKALKTIDIDAFQNALKIFGRIKGGRVLTSEVDDVLDSMDILVIPETFQEVIKHIDIDSNQMVDIGDIVFTLNELQQQYEDVSIMEETALDETTSRKLSNVSGCYLPYRKKSSLSSRLCESSLSQKLNTKSLSNHEIMKENDDLEFKRLKSTLQIRKFQDEVDSSDIEFQEPYSKYGLNFKRSSEKAEILDSKSKSQNLKSVTSFKKSLDKNDSFSISKLQKTAVRRHSTLLKQVSSKEKTAINSLGNVCKAIKKLQENYIGTEELQSILPSIGITLSDKEFKKIVTNTARNENGMVKLDNFMSALSKQLSLPEYDVLIDAIKAIDKIKDENIDYRDLNTCLQNFGVYLSKPEFQKIMELTEAGETKKVNFKEFVDTMMSSTERFSEKLLLPDTIENLHNLSKEKMSAPDLWNTLSSLNSNLKKDEFLAAMRLSTVDGDEKVQIEEFAKVVKDMRDASRLEELQEIILAVDLPEGDMIPEKDLEGFLSDTGIKSPKEEVEKILQSDFVSDDNTVNVKDCMKALRDTQKFSSFIDFRKETFFSNLKLSKADGFKEAAHILSHCTLKSLNIYLTEEDCSGTLRLSDITWVGKFHVLCIKTKTRKSTFICPFRALVPLPFFFFFFFFVFLGLHPWHMEVSRLGFESELQLLAYTTATAMPYPGHACNLHHSSWQHWILNPLSGARD", "length": 895, "header": "tr|A0A5G2QXS9-1|A0A5G2QXS9_PIG Isoform 1 of EF-hand calcium binding domain 13 OS=Sus scrofa OX=9823 GN=EFCAB13 PE=4 SV=2 CANONICAL=A0A5G2QXS9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9/entry", "sequence": { "sequence": "MLVCHLYTFFDEVSGEENIDLSDDGYTSFATDLASRNIDSKKYIKLSKTKEKRITPEIRGLSTEHQKMYETSMFLFEEEKSSDFSGERKVKKKRSLQVQLHTKRTEIPSLSVKEKMTRKENSSCKLPSQYDVHKTLSHLGTSSSIIRKNETLSNLYQTLYEEIPQGHFGSQELSALQKACKIFGKIRNGRIYVNDLPMIHHILKISISDTEMRKALKTIDIDAFQNALKIFGRIKGGRVLTSEVDDVLDSMDILVIPETFQEVIKHIDIDSNQMVDIGDIVFTLNELQQQYEDVSIMEETALDETTSRKLSNVSGCYLPYRKKSSLSSRLCESSLSQKLNTKSLSNHEIMKENDDLEFKRLKSTLQIRKFQDEVDSSDIEFQEPYSKYGLNFKRSSEKAEILDSKSKSQNLKSVTSFKKSLDKNDSFSISKLQKTAVRRHSTLLKQVSSKEKTAINSLGNVCKAIKKLQENYIGTEELQSILPSIGITLSDKEFKKIVTNTARNENGMVKLDNFMSALSKQLSLPEYDVLIDAIKAIDKIKDENIDYRDLNTCLQNFGVYLSKPEFQKIMELTEAGETKKVNFKEFVDTMMSSTERFSEKLLLPDTIENLHNLSKEKMSAPDLWNTLSSLNSNLKKDEFLAAMRLSTVDGDEKVQIEEFAKVVKDMRDASRLEELQEIILAVDLPEGDMIPEKDLEGFLSDTGIKSPKEEVEKILQSDFVSDDNTVNVKDCMKALRDTQKFSSFIDFRKETFFSNLKLSKADGFKEAAHILSHCTLKSLNIYLTEEDCSGTLRLSDITWVGKFHVLCIKTKTRKSTFICPFRALVPLPFFFFFFFFVFLGLHPWHMEVSRLGFESELQLLAYTTATAMPYPGHACNLHHSSWQHWILNPLSGARD", "length": 895, "header": "tr|A0A5G2QXS9-1|A0A5G2QXS9_PIG Isoform 1 of EF-hand calcium binding domain 13 OS=Sus scrofa OX=9823 GN=EFCAB13 PE=4 SV=2 CANONICAL=A0A5G2QXS9-1" }, "locus": { "chromosome": "12", "start_pos": 16674982, "end_pos": 16596553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078117.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078117.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063012.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063012.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 612, "end_pos": 614, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXS9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 895, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXS9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXS9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS9" }, { "id": "SM00054", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00054" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 259, "end_pos": 287, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 312, "end_pos": 314 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 612, "end_pos": 614 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXT1-1", "uniprot_ac": "A0A5G2QXT1", "uniprot_id": "A0A5G2QXT1_PIG", "mass": { "chemical_mass": 27991.0, "monoisotopic_mass": 27991.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXT1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046361", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046361", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXT1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRKSIQQALLETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTVKLLEENIGKTLSDINIMNISSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHSWWNVNWYNHYGEQFGDTLEIYT", "length": 240, "header": "tr|A0A5G2QXT1-1|A0A5G2QXT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXT1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1/entry", "sequence": { "sequence": "MGKRKSIQQALLETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTVKLLEENIGKTLSDINIMNISSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKANQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHSWWNVNWYNHYGEQFGDTLEIYT", "length": 240, "header": "tr|A0A5G2QXT1-1|A0A5G2QXT1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXT1-1" }, "locus": { "chromosome": "13", "start_pos": 9165835, "end_pos": 9165116, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066948.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066948.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069731.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069731.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXT1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 240, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXT1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXT5-1", "uniprot_ac": "A0A5G2QXT5", "uniprot_id": "A0A5G2QXT5_PIG", "mass": { "chemical_mass": 40687.0, "monoisotopic_mass": 40687.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXT5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037775", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037775", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05768", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05768", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21817", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21817", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-173623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWDAGVERGTPGSRRGLGSRDSEAWSPGGHAASSLPAYNTAPSVYPLAPCGRDVSDHNVALGCLVSSYFPEPVTVTWNSGALSRVVHTFPSVLQPSGLYSLSSMVIVAASSLSTLSYTCNVYHPATNTKVDKRVDIEPPTPICPEICSCPAAEVLGAPSVFLFPPKPKDILMISRTPKVTCVVVDVSQEEAEVQFSWYVDGVQLYTAQTRPMEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNKDLLSPITRTISKATGPSRVPQVYTLPPAWEELSKSKVSITCLVTGFYPPDIDVEWQSNGQQEPEGNYRTTPPQQDVDGTYFLYSKLAVDKVRWQRGDLFQCAVMHEALHNHYTQKSVSQTPGK", "length": 370, "header": "tr|A0A5G2QXT5-1|A0A5G2QXT5_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QXT5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5/entry", "sequence": { "sequence": "MGWDAGVERGTPGSRRGLGSRDSEAWSPGGHAASSLPAYNTAPSVYPLAPCGRDVSDHNVALGCLVSSYFPEPVTVTWNSGALSRVVHTFPSVLQPSGLYSLSSMVIVAASSLSTLSYTCNVYHPATNTKVDKRVDIEPPTPICPEICSCPAAEVLGAPSVFLFPPKPKDILMISRTPKVTCVVVDVSQEEAEVQFSWYVDGVQLYTAQTRPMEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNKDLLSPITRTISKATGPSRVPQVYTLPPAWEELSKSKVSITCLVTGFYPPDIDVEWQSNGQQEPEGNYRTTPPQQDVDGTYFLYSKLAVDKVRWQRGDLFQCAVMHEALHNHYTQKSVSQTPGK", "length": 370, "header": "tr|A0A5G2QXT5-1|A0A5G2QXT5_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=A0A5G2QXT5-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3720852, "end_pos": 3717965, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087622.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087622.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069687.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069687.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-173623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-173623", "resource": "Reactome", "description": "Classical antibody-mediated complement activation" }, { "id": "R-SSC-2029481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029481", "resource": "Reactome", "description": "FCGR activation" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-2029485", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "immunoglobulin receptor binding", "id": "GO:0034987", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034987", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "pmid": "" }, { "name": "antigen binding", "id": "GO:0003823", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003823", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "antibacterial humoral response", "id": "GO:0019731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019731", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "pmid": "" }, { "name": "complement activation, classical pathway", "id": "GO:0006958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006958", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "immunoglobulin complex, circulating", "id": "GO:0042571", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042571", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 370, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 136, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXT9-1", "uniprot_ac": "A0A5G2QXT9", "uniprot_id": "A0A5G2QXT9_PIG", "mass": { "chemical_mass": 27857.0, "monoisotopic_mass": 27857.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QXT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QXT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXT9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKAINDKPTANIILNGEKLKEFPLRSGTRQGCLLSPLLFNIVLGVLATAIREVKEIKGIQIGKEEVKLSLFADDMMLYIENPKDSTRKLLELIHEFGNVAGYKTNTQKSIAFLYTNNEKAEKEIREAIPFTIASKRIKYLGINLPKETKDLYSENYRPLMKEIKDDTKRWKDIPCSWIGRVNIIKMTILPKAIYRFNAIPIELPRTCFTELEQNILKFVWKYKRPRIAKDILKKGINLLS", "length": 241, "header": "tr|A0A5G2QXT9-1|A0A5G2QXT9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXT9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9/entry", "sequence": { "sequence": "MIKAINDKPTANIILNGEKLKEFPLRSGTRQGCLLSPLLFNIVLGVLATAIREVKEIKGIQIGKEEVKLSLFADDMMLYIENPKDSTRKLLELIHEFGNVAGYKTNTQKSIAFLYTNNEKAEKEIREAIPFTIASKRIKYLGINLPKETKDLYSENYRPLMKEIKDDTKRWKDIPCSWIGRVNIIKMTILPKAIYRFNAIPIELPRTCFTELEQNILKFVWKYKRPRIAKDILKKGINLLS", "length": 241, "header": "tr|A0A5G2QXT9-1|A0A5G2QXT9_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXT9-1" }, "locus": { "chromosome": "16", "start_pos": 26151945, "end_pos": 26151223, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068436.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068436.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063022.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063022.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXT9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 241, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXT9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXT9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QXT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT9" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 145, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXW9-1", "uniprot_ac": "A0A5G2QXW9", "uniprot_id": "A0A5G2QXW9_PIG", "mass": { "chemical_mass": 58281.0, "monoisotopic_mass": 58281.0 }, "refseq": {}, "gene_names": [ { "name": "TTC31", "type": "recommended", "evidence": [ { "id": "A0A5G2QXW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat domain 31", "type": "synonym", "evidence": [ { "id": "A0A5G2QXW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9", "locus": { "chromosome": "3", "start_pos": 68555232, "end_pos": 68564007, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008275", "url": "https://www.ensembl.org/id/ENSSSCG00000008275" } ] } } ], "crossref": [ { "id": "A0A5G2QXW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008275", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008275", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518904", "url": "https://www.ncbi.nlm.nih.gov/gene/100518904", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47678:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47678:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B1J5", "url": "https://www.uniprot.org/uniprotkb/A0A287B1J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1J5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481C052", "url": "https://www.uniprot.org/uniprotkb/A0A481C052", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481C052-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C052-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPIPKTVGLTKLDCPLRPGCPLGVADVPKLCKEFGPEDYGDEVKRIPSSPPPPPPPPSPNHHDHASILPSELSPTPAPRRATSPGTLERRNDRFLDPLCNEEQTTEQNDKDKEAERLGTYCGLRKSFLYPPRASKPCPQSPPAPDNLLQVAMPQRLLLTEEEANRLAEELVAEEERMKQKAEKKRLKKKRQKDRKRRERLEQHSGEPNASVCTQAEISPTGDGSPPSSSGNPSQGQCDEEEDSLDLSSTFVSLALRKVGDWPPSALREKGLSQDPQGRSQAPQEKSQEEESTPEEESPRQSPKAEASPGLLAAALQRSQELAELGTSLAENGFYHKAVVLFTQALKLNPRDHRLFGNRSFCHERLGQPVCALADAQVALTLRPGWPRGLFRLGKALMGLQRFEEAAAVFQETLRGGSQPDAARELHSCLVQLALDQRGGIPGPPPSTRFPHPFPHAELGPSGLLSPRGPGSPAQTVPGLLSPPLRYPPHHLNPASWPLPQTQSRRPCPPHLQDSSRGQGILGPGPQRLPHTR", "length": 533, "header": "tr|A0A5G2QXW9-1|A0A5G2QXW9_PIG Isoform 1 of Tetratricopeptide repeat domain 31 OS=Sus scrofa OX=9823 GN=TTC31 PE=4 SV=2 CANONICAL=A0A5G2QXW9-1" }, "isoforms": [ { "isoform_ac": "A0A287B1J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1J5/entry", "sequence": { "sequence": "MAPIPKTVGLTKLDCPLRPGCPLGVADVPKLCKEFGPEDYGDEDVVDFLRRLVENDPQGLHRIHVDGSSGRLQLWHHDRFLDPLCNEEQTTEQNDKDKEAERLGTYCGLRKSFLYPPRASKPCPQSPPAPDNLLQVAMPQRLLLTEEEANRLAEELVAEEERMKQKAEKKRLKKKAEISPTGDGSPPSSSGNPSQGQCDEEEDSLDLSSTFVSLALRKVGDWPPSALREKGLSQDPQGRSQAPQEKSQEEESTPEEESPRQSPKAEASPGLLAAALQRSQELAELGTSLAENGFYHKAVVLFTQALKLNPRDHRLFGNRSFCHERLGQPVCALADAQVALTLRPGWPRGLFRLGKALMGLQRFEEAAAVFQETLRGGSQPDAARELHSCLVQLALQDQRGGIPGPPPSTRFPHPFPHAELGPSGLLSPRGPGSPAQTVPGLLSPPLRYPPHHLNPASWPLPQTQSRRPCPPHLQDSSRGQGILGPGPQRLPHTR", "length": 494, "header": "tr|A0A287B1J5-1|A0A287B1J5_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 31 OS=Sus scrofa OX=9823 GN=TTC31 PE=4 SV=2 CANONICAL=A0A5G2QXW9-1" }, "locus": { "chromosome": "3", "start_pos": 68563683, "end_pos": 68556401, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060280.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060280.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050280.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050280.2" } ] } }, { "isoform_ac": "A0A481C052-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C052/entry", "sequence": { "sequence": "MAPIPKTVGLTKLDCPLRPGCPLGVADVPKLCKEFGPEDYGDEDVVDFLRRLVENDPQGLHRIHVDGSSGRLQLWHHDRFLDPLCNEEQTTEQNDKDKEAERLGTYCGLRKSFLYPPRASKPCPQSPPAPDNLLQVAMPQRLLLTEEEANRLAEELVAEEERMKQKAEKKRLKKKRQKDRKRRERLEQHSGEPNASVCTQAEISPTGDGSPPSSSGNPSQGQCDEEEDSLDLSSTFVSLALRKVGDWPPSALREKGLSQDPQGRSQAPQEKSQEEESTPEEESPRQSPKAEASPGLLAAALQRSQELAELGTSLAENGFYHKAVVLFTQALKLNPRDHRLFGNRSFCHERLGQPVCALADAQVALTLRPGWPRGLFRLGKALMGLQRFEEAAAVFQETLRGGSQPDAARELHSCLVQLALDQRGGIPGPPPSTRFPHPFPHAELGPSGLLSPRGPGSPAQTVPGLLSPPLRYPPHHLNPASWPLPQTQSRRPCPPHLQDSSRGQGILGPGPQRLPHTR", "length": 518, "header": "tr|A0A481C052-1|A0A481C052_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 31 OS=Sus scrofa OX=9823 GN=TTC31 PE=4 SV=1 CANONICAL=A0A5G2QXW9-1" }, "locus": { "chromosome": "3", "start_pos": 68563683, "end_pos": 68556401, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009063.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009063.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008835.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008835.4" } ] } }, { "isoform_ac": "A0A5G2QXW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9/entry", "sequence": { "sequence": "MAPIPKTVGLTKLDCPLRPGCPLGVADVPKLCKEFGPEDYGDEVKRIPSSPPPPPPPPSPNHHDHASILPSELSPTPAPRRATSPGTLERRNDRFLDPLCNEEQTTEQNDKDKEAERLGTYCGLRKSFLYPPRASKPCPQSPPAPDNLLQVAMPQRLLLTEEEANRLAEELVAEEERMKQKAEKKRLKKKRQKDRKRRERLEQHSGEPNASVCTQAEISPTGDGSPPSSSGNPSQGQCDEEEDSLDLSSTFVSLALRKVGDWPPSALREKGLSQDPQGRSQAPQEKSQEEESTPEEESPRQSPKAEASPGLLAAALQRSQELAELGTSLAENGFYHKAVVLFTQALKLNPRDHRLFGNRSFCHERLGQPVCALADAQVALTLRPGWPRGLFRLGKALMGLQRFEEAAAVFQETLRGGSQPDAARELHSCLVQLALDQRGGIPGPPPSTRFPHPFPHAELGPSGLLSPRGPGSPAQTVPGLLSPPLRYPPHHLNPASWPLPQTQSRRPCPPHLQDSSRGQGILGPGPQRLPHTR", "length": 533, "header": "tr|A0A5G2QXW9-1|A0A5G2QXW9_PIG Isoform 1 of Tetratricopeptide repeat domain 31 OS=Sus scrofa OX=9823 GN=TTC31 PE=4 SV=2 CANONICAL=A0A5G2QXW9-1" }, "locus": { "chromosome": "3", "start_pos": 68563683, "end_pos": 68556401, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074137.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074137.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069723.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069723.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 76, "start_aa": "Thr", "end_pos": 76, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr76", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 533, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXW9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 76 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 358, "end_pos": 360 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXY0-1", "uniprot_ac": "A0A5G2QXY0", "uniprot_id": "A0A5G2QXY0_PIG", "mass": { "chemical_mass": 12720.0, "monoisotopic_mass": 12720.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXY0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXY0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047502", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047502", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QXY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRMICVLILQPSTLPNLLMSSNSFLVLSLGFSKYSIISSADSDSFTSSFPIWIPFISFSSLIAVARTSKTMLNNSGESGHPCLVPDLSWNVFNFSPLRMMLAVGFSYMFFIMLR", "length": 114, "header": "tr|A0A5G2QXY0-1|A0A5G2QXY0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXY0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0/entry", "sequence": { "sequence": "MRMICVLILQPSTLPNLLMSSNSFLVLSLGFSKYSIISSADSDSFTSSFPIWIPFISFSSLIAVARTSKTMLNNSGESGHPCLVPDLSWNVFNFSPLRMMLAVGFSYMFFIMLR", "length": 114, "header": "tr|A0A5G2QXY0-1|A0A5G2QXY0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QXY0-1" }, "locus": { "chromosome": "1", "start_pos": 107938223, "end_pos": 107937882, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075491.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075491.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066804.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066804.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXY0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 114, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXY0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXY0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 73, "end_pos": 75 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXY3-1", "uniprot_ac": "A0A5G2QXY3", "uniprot_id": "A0A5G2QXY3_PIG", "mass": { "chemical_mass": 12209.0, "monoisotopic_mass": 12209.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QXY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QXY3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045820", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045820", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QXY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFNRYKQRCGGSLHAKYCISLGLLAGVMINCAVPTPPKTVLHILCEVQQGTAEQTSAGVGDMMVATVRKSGPELREGNTSSSGNSTTEGILEKDAEFLYISHHRKVIVNSKSR", "length": 113, "header": "tr|A0A5G2QXY3-1|A0A5G2QXY3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXY3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3/entry", "sequence": { "sequence": "MFNRYKQRCGGSLHAKYCISLGLLAGVMINCAVPTPPKTVLHILCEVQQGTAEQTSAGVGDMMVATVRKSGPELREGNTSSSGNSTTEGILEKDAEFLYISHHRKVIVNSKSR", "length": 113, "header": "tr|A0A5G2QXY3-1|A0A5G2QXY3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QXY3-1" }, "locus": { "chromosome": "1", "start_pos": 185768272, "end_pos": 185767934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070001.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070001.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069781.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069781.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 35, "start_aa": "Thr", "end_pos": 35, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 113, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXY3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 35 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 78, "end_pos": 80 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY01-1", "uniprot_ac": "A0A5G2QY01", "uniprot_id": "A0A5G2QY01_PIG", "mass": { "chemical_mass": 17564.0, "monoisotopic_mass": 17564.0 }, "refseq": { "ac": "XP_001926210", "name": "transcription factor 24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926210" }, "gene_names": [ { "name": "TCF24", "type": "recommended", "evidence": [ { "id": "A0A5G2QY01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ] }, { "name": "TCF24", "type": "synonym", "evidence": [ { "id": "XP_001926210", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926210" } ] } ], "protein_names": [ { "name": "Transcription factor 24", "type": "synonym", "evidence": [ { "id": "A0A5G2QY01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01/entry#names_and_taxonomy" } ] }, { "name": "transcription factor 24", "type": "synonym", "evidence": [ { "id": "XP_001926210", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926210" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCF24", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01", "locus": { "chromosome": "4", "start_pos": 67825294, "end_pos": 67816938, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049935", "url": "https://www.ensembl.org/id/ENSSSCG00000049935" } ] } } ], "crossref": [ { "id": "A0A5G2QY01", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049935", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049935", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19710", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19710", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156026", "url": "https://www.ncbi.nlm.nih.gov/gene/100156026", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156026", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156026", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QY01", "url": "https://www.orthodb.org/?gene=A0A5G2QY01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926210", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926210", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRGSSAGSPLITSKEPAPPAAATRESSPGRSGPGPVGPGGGGARSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEATPDAGLGALRGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNIPTDSQP", "length": 168, "header": "tr|A0A5G2QY01-1|A0A5G2QY01_PIG Isoform 1 of Transcription factor 24 OS=Sus scrofa OX=9823 GN=TCF24 PE=4 SV=1 CANONICAL=A0A5G2QY01-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01/entry", "sequence": { "sequence": "MDRGSSAGSPLITSKEPAPPAAATRESSPGRSGPGPVGPGGGGARSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEATPDAGLGALRGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNIPTDSQP", "length": 168, "header": "tr|A0A5G2QY01-1|A0A5G2QY01_PIG Isoform 1 of Transcription factor 24 OS=Sus scrofa OX=9823 GN=TCF24 PE=4 SV=1 CANONICAL=A0A5G2QY01-1" }, "locus": { "chromosome": "4", "start_pos": 67824290, "end_pos": 67817717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083967.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083967.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069796.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069796.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156026", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156026", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "pmid": "" }, { "name": "developmental process", "id": "GO:0032502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032502", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 168, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY01" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QY01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY01" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 102, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY10-1", "uniprot_ac": "A0A5G2QY10", "uniprot_id": "A0A5G2QY10_PIG", "mass": { "chemical_mass": 12785.0, "monoisotopic_mass": 12785.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QY10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY10", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY10", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045344", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045344", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QY10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY10-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMTAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QY10-1|A0A5G2QY10_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY10-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY10-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10/entry", "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMTAILTGVRWYLMVVLICISLIISDVEHFFMCLLAICISSLENSLFRSFAHFSID", "length": 112, "header": "tr|A0A5G2QY10-1|A0A5G2QY10_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY10-1" }, "locus": { "chromosome": "10", "start_pos": 52142756, "end_pos": 52142421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086066.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086066.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069028.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069028.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY10-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY10-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY10" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY36-1", "uniprot_ac": "A0A5G2QY36", "uniprot_id": "A0A5G2QY36_PIG", "mass": { "chemical_mass": 35947.0, "monoisotopic_mass": 35947.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Peptidase S1 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QY36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY36", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY36", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043557", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043557", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASWEVPSSRGGFLSLLVWLPVLWLLVLRSWLSGGGGSEAGASPPVTFLLIQGACGHQILGIVNGVPAPERKWPWQVTLQLGSKHKCEGSIIAPRWVLTAAHCVIGFRALEVKLGTTYLYSECESAVVVPVEDIISHENYHGNAFSNDIALLHLAFSVNYSSYIQPVCLPEKGVGMQPGTQCWATGWGRMIEFGEPPYLQEIEQIILPLKKCDDMAQKAANISQNLVQKGMVCGYNKNKGDSGGPLVCEFHDSWVQVGIVSWGVRCGLKEVPAVYTDVSFYKDWIIARMSQASPLDSVGFFILLLCLVLPLGILGTPGYPGLGPSCFSVSH", "length": 331, "header": "tr|A0A5G2QY36-1|A0A5G2QY36_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY36-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36/entry", "sequence": { "sequence": "MASWEVPSSRGGFLSLLVWLPVLWLLVLRSWLSGGGGSEAGASPPVTFLLIQGACGHQILGIVNGVPAPERKWPWQVTLQLGSKHKCEGSIIAPRWVLTAAHCVIGFRALEVKLGTTYLYSECESAVVVPVEDIISHENYHGNAFSNDIALLHLAFSVNYSSYIQPVCLPEKGVGMQPGTQCWATGWGRMIEFGEPPYLQEIEQIILPLKKCDDMAQKAANISQNLVQKGMVCGYNKNKGDSGGPLVCEFHDSWVQVGIVSWGVRCGLKEVPAVYTDVSFYKDWIIARMSQASPLDSVGFFILLLCLVLPLGILGTPGYPGLGPSCFSVSH", "length": 331, "header": "tr|A0A5G2QY36-1|A0A5G2QY36_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY36-1" }, "locus": { "chromosome": "13", "start_pos": 29694680, "end_pos": 29690220, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084431.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084431.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069053.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069053.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY36-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 331, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY36-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY36" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QY36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY36" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 290, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 221, "end_pos": 223 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY54-1", "uniprot_ac": "A0A5G2QY54", "uniprot_id": "A0A5G2QY54_PIG", "mass": { "chemical_mass": 23355.0, "monoisotopic_mass": 23355.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QY54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY54", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050005", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050005", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKQGGGQISGNYGCGTEKKRLKTNGESVRELRDNVKHTNICIIGVPEEEREKGTEKIFREITANNVPHMGKEPLIQIPEAQRVPHKINPRRNTPRHLLIKLTKIKDKEKILKVAREKKQVTYKGTPIRLSADFSAETLQARREWHDILNMMEGKNLQPRLLYPARLSFRLEGEIKTFSDKQKLREFSNTKPALQQILKELL", "length": 202, "header": "tr|A0A5G2QY54-1|A0A5G2QY54_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QY54-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54/entry", "sequence": { "sequence": "MNKQGGGQISGNYGCGTEKKRLKTNGESVRELRDNVKHTNICIIGVPEEEREKGTEKIFREITANNVPHMGKEPLIQIPEAQRVPHKINPRRNTPRHLLIKLTKIKDKEKILKVAREKKQVTYKGTPIRLSADFSAETLQARREWHDILNMMEGKNLQPRLLYPARLSFRLEGEIKTFSDKQKLREFSNTKPALQQILKELL", "length": 202, "header": "tr|A0A5G2QY54-1|A0A5G2QY54_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QY54-1" }, "locus": { "chromosome": "16", "start_pos": 8676669, "end_pos": 8675866, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070452.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070452.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069813.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069813.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 202, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QY54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 133, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QY54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY54" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 200, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY55-1", "uniprot_ac": "A0A5G2QY55", "uniprot_id": "A0A5G2QY55_PIG", "mass": { "chemical_mass": 12953.0, "monoisotopic_mass": 12953.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QY55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY55", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY55", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY55", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043916", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043916", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QY55", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY55-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFIAALFAIAKTSKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNEIMPFVATWMELETLILSKVSQKEKDKYHMISLMSGIQYTAQMNLSTEKKIKDLENRLVVAQGEGEGVG", "length": 112, "header": "tr|A0A5G2QY55-1|A0A5G2QY55_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY55-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY55-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55/entry", "sequence": { "sequence": "MFIAALFAIAKTSKQPKCPSTDDWIRKMWYIYTMEYYSAIKKNEIMPFVATWMELETLILSKVSQKEKDKYHMISLMSGIQYTAQMNLSTEKKIKDLENRLVVAQGEGEGVG", "length": 112, "header": "tr|A0A5G2QY55-1|A0A5G2QY55_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY55-1" }, "locus": { "chromosome": "8", "start_pos": 52681921, "end_pos": 52681586, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087450.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087450.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069073.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069073.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY55", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY55-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY55-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY55" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY93-1", "uniprot_ac": "A0A5G2QY93", "uniprot_id": "A0A5G2QY93_PIG", "mass": { "chemical_mass": 41268.0, "monoisotopic_mass": 41268.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QY93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QY93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY93", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042520", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042520", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QY93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSWFSEKINKIDKPLARHIKQKRKRTQMNQIRNEKGEVTTDITEIQRIIRDYYMQLYTNKMENLEEMDKFLEKYNLPRLNQDEILKMNGPITRTEIELKLKLPTNKSPGPDGFTSEFYQTFREELTSLLLKLFQKIAEEGILPNSFYEATITLIPKPDKDTTKKENYRPISLMNIDAKILSKILANHIQQYIKSIVHHDQVGFIPGMQEFFKFCKSVSVIHHINKRKKKNHMIISIDAEKAFDKIQHPFLIKTLQKVGIEGTYLNMIKAIYDKPTANSILNGEKVKEFPLRSGTSQGCLLLPLLFNIVFEVLDTAIREVKEIKGIQIGKEEVKLSLFADDMILHLENPKDSTR", "length": 354, "header": "tr|A0A5G2QY93-1|A0A5G2QY93_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY93-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93/entry", "sequence": { "sequence": "MKSWFSEKINKIDKPLARHIKQKRKRTQMNQIRNEKGEVTTDITEIQRIIRDYYMQLYTNKMENLEEMDKFLEKYNLPRLNQDEILKMNGPITRTEIELKLKLPTNKSPGPDGFTSEFYQTFREELTSLLLKLFQKIAEEGILPNSFYEATITLIPKPDKDTTKKENYRPISLMNIDAKILSKILANHIQQYIKSIVHHDQVGFIPGMQEFFKFCKSVSVIHHINKRKKKNHMIISIDAEKAFDKIQHPFLIKTLQKVGIEGTYLNMIKAIYDKPTANSILNGEKVKEFPLRSGTSQGCLLLPLLFNIVFEVLDTAIREVKEIKGIQIGKEEVKLSLFADDMILHLENPKDSTR", "length": 354, "header": "tr|A0A5G2QY93-1|A0A5G2QY93_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY93-1" }, "locus": { "chromosome": "14", "start_pos": 61830511, "end_pos": 61829450, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082242.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082242.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066916.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066916.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 354, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY93" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QY93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY93" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 354, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QY98-1", "uniprot_ac": "A0A5G2QY98", "uniprot_id": "A0A5G2QY98_PIG", "mass": { "chemical_mass": 14228.0, "monoisotopic_mass": 14228.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QY98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98", "locus": {} } ], "crossref": [ { "id": "A0A5G2QY98", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050322", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050322", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QY98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ICFSEEVLVQYWRGCGEKGTLVHYWWECKLVQPLWKTIRRVLKKLKIELPYDLAIPLHPFPIYAEKNGNTNLKRYMHPNIHSSTIYNCQDMEQLKFPSTDEWIKKMQYVDCIDGILLSH", "length": 119, "header": "tr|A0A5G2QY98-1|A0A5G2QY98_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY98-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QY98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98/entry", "sequence": { "sequence": "ICFSEEVLVQYWRGCGEKGTLVHYWWECKLVQPLWKTIRRVLKKLKIELPYDLAIPLHPFPIYAEKNGNTNLKRYMHPNIHSSTIYNCQDMEQLKFPSTDEWIKKMQYVDCIDGILLSH", "length": 119, "header": "tr|A0A5G2QY98-1|A0A5G2QY98_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QY98-1" }, "locus": { "chromosome": "14", "start_pos": 125080041, "end_pos": 125079685, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084225.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084225.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069858.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069858.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QY98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 119, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QY98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QY98" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYA3-1", "uniprot_ac": "A0A5G2QYA3", "uniprot_id": "A0A5G2QYA3_PIG", "mass": { "chemical_mass": 40552.0, "monoisotopic_mass": 40552.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043909", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043909", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QYA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLNVRWKGEALLKYRHKSHSYFYETTLFLVFLGPYPQHMEVPRLGVESELQLPAYPTGTAMPDLSRICDLHHSSRQRRILNPLRGARDQSHILMDTSQVLTAEPRWELLKQLLYFNFIFTKRQRIGRGKAGIMVVTPREWRKRPWSTITGQTALPLPSLSTVMHKKRSKHEPKASVNKASQCGESGDLSSPRAQGGRRSSQSIEALALDGLGPFFWKAWAALSWACTDHGDDTGENPYGPRGRTADWVGVRGAWAAEDQTQSQPRRQILSGWMGRHLNGNGLRKTDPPGNDGLKKNRHLGDRAQTGASPGDWGRDEVVGAGLGNGLSGELARGAGGHAPAEAKGGAEGRPGAVCPISRQLFPSRGHP", "length": 368, "header": "tr|A0A5G2QYA3-1|A0A5G2QYA3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYA3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3/entry", "sequence": { "sequence": "MKLNVRWKGEALLKYRHKSHSYFYETTLFLVFLGPYPQHMEVPRLGVESELQLPAYPTGTAMPDLSRICDLHHSSRQRRILNPLRGARDQSHILMDTSQVLTAEPRWELLKQLLYFNFIFTKRQRIGRGKAGIMVVTPREWRKRPWSTITGQTALPLPSLSTVMHKKRSKHEPKASVNKASQCGESGDLSSPRAQGGRRSSQSIEALALDGLGPFFWKAWAALSWACTDHGDDTGENPYGPRGRTADWVGVRGAWAAEDQTQSQPRRQILSGWMGRHLNGNGLRKTDPPGNDGLKKNRHLGDRAQTGASPGDWGRDEVVGAGLGNGLSGELARGAGGHAPAEAKGGAEGRPGAVCPISRQLFPSRGHP", "length": 368, "header": "tr|A0A5G2QYA3-1|A0A5G2QYA3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYA3-1" }, "locus": { "chromosome": "5", "start_pos": 77791191, "end_pos": 77789475, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069773.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069773.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069863.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069863.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYA3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 368, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYA3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYA3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYE6-1", "uniprot_ac": "A0A5G2QYE6", "uniprot_id": "A0A5G2QYE6_PIG", "mass": { "chemical_mass": 41455.0, "monoisotopic_mass": 41455.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYE6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044637", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044637", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QYE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDFNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQPTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTLLVIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDMCTRMFIAALFTIAKTWKQRKCPSTDDWIQKMWYIYTMEYYSAIKKNDIMPFAATWMELENLILSEMSQKDKDKYHMISLITGIYPAQMNISLEKKIMDLEKRLVAA", "length": 350, "header": "tr|A0A5G2QYE6-1|A0A5G2QYE6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYE6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDFNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQPTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTLLVIREMQIKTTMRYHLTPVRMAIIHKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDMCTRMFIAALFTIAKTWKQRKCPSTDDWIQKMWYIYTMEYYSAIKKNDIMPFAATWMELENLILSEMSQKDKDKYHMISLITGIYPAQMNISLEKKIMDLEKRLVAA", "length": 350, "header": "tr|A0A5G2QYE6-1|A0A5G2QYE6_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYE6-1" }, "locus": { "chromosome": "2", "start_pos": 58798820, "end_pos": 58797771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079915.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079915.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069903.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069903.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYE6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYF5-1", "uniprot_ac": "A0A5G2QYF5", "uniprot_id": "A0A5G2QYF5_PIG", "mass": { "chemical_mass": 55797.0, "monoisotopic_mass": 55797.0 }, "refseq": {}, "gene_names": [ { "name": "SPNS3", "type": "recommended", "evidence": [ { "id": "A0A5G2QYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" } ] } ], "protein_names": [ { "name": "SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)", "type": "synonym", "evidence": [ { "id": "A0A5G2QYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPNS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5", "locus": { "chromosome": "12", "start_pos": 50443324, "end_pos": 50388897, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017880", "url": "https://www.ensembl.org/id/ENSSSCG00000017880" } ] } } ], "crossref": [ { "id": "A0A5G2QYF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017880", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017880", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17328", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17328", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23505:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23505:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGP3", "url": "https://www.uniprot.org/uniprotkb/F1RGP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGP3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "HRSGSREGWVAGSPQEVTRCRADASCPAPVPGQELGSGEYSPPSSPAPWSLPRWRAYLAAAVLCYINLLNYMNWFIIAGVLLDVQKFFHISDSKAGLLQMVFIGCLLLSAPVFGYLGDRHSRKVTLSVGIILWSGAGLSSSFISPSHAWLFFLSRGVVGIGTASYSTIAPTVLGDLFVRDQRTCVLAIFYLFIPVGSGLGYVLGSAVAELSGNWRWALRITPCLEAVALILLLVLVPDPPRGAAEKQGVVALGGRGTAGGRTSATFGESNQSFVWSTLGVTAMAFVTGALGFWIPKFLFEARVVHGLQLPCFQEPCSSQDSLIFGALTVGTGIIGVILGAKASSTYKKVNPRAEPLICASSLLAAAPCIYLALILAPITLLGCYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQITVIHVLGDAGSPYLTGLISSALRAARPDSYLQRFLSLQQSFLCCVFAIALGGGCFLLTALYLERDQAQVGQPGTGTSTPRMHARLRADPVGAKSTGHPLHEPLAS", "length": 527, "header": "tr|A0A5G2QYF5-1|A0A5G2QYF5_PIG Isoform 1 of SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) OS=Sus scrofa OX=9823 GN=SPNS3 PE=3 SV=1 CANONICAL=A0A5G2QYF5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5/entry", "sequence": { "sequence": "HRSGSREGWVAGSPQEVTRCRADASCPAPVPGQELGSGEYSPPSSPAPWSLPRWRAYLAAAVLCYINLLNYMNWFIIAGVLLDVQKFFHISDSKAGLLQMVFIGCLLLSAPVFGYLGDRHSRKVTLSVGIILWSGAGLSSSFISPSHAWLFFLSRGVVGIGTASYSTIAPTVLGDLFVRDQRTCVLAIFYLFIPVGSGLGYVLGSAVAELSGNWRWALRITPCLEAVALILLLVLVPDPPRGAAEKQGVVALGGRGTAGGRTSATFGESNQSFVWSTLGVTAMAFVTGALGFWIPKFLFEARVVHGLQLPCFQEPCSSQDSLIFGALTVGTGIIGVILGAKASSTYKKVNPRAEPLICASSLLAAAPCIYLALILAPITLLGCYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQITVIHVLGDAGSPYLTGLISSALRAARPDSYLQRFLSLQQSFLCCVFAIALGGGCFLLTALYLERDQAQVGQPGTGTSTPRMHARLRADPVGAKSTGHPLHEPLAS", "length": 527, "header": "tr|A0A5G2QYF5-1|A0A5G2QYF5_PIG Isoform 1 of SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) OS=Sus scrofa OX=9823 GN=SPNS3 PE=3 SV=1 CANONICAL=A0A5G2QYF5-1" }, "locus": { "chromosome": "12", "start_pos": 50443321, "end_pos": 50388897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071462.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071462.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069913.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069913.1" } ] } }, { "isoform_ac": "F1RGP3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGP3/entry", "sequence": { "sequence": "VAGSPQEVTRCRADASCPAPVPGQELGSGEYSPPSSPAPWSLPRWRAYLAAAVLCYINLLNYMNWFIIAGVLLDVQKFFHISDSKAGLLQMVFIGCLLLSAPVFGYLGDRHSRKVTLSVGIILWSGAGLSSSFISPSHAWLFFLSRGVVGIGTASYSTIAPTVLGDLFVRDQRTCVLAIFYLFIPVGSGLGYVLGSAVAELSGNWRWALRITPCLEAVALILLLVLVPDPPRGAAEKQGTNPSLFFSISLIFGALTVGTGIIGVILGAKASSTYKKVNPRAEPLICASSLLAAAPCIYLALILAPITLLGCYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQITVIHVLGDAGSPYLTGLISSALRAARPDSYLQRFLSLQQSFLCCVFAIALGGGCFLLTALYLERDQAQVGQPGTGTSTPRMHARLRADPVGAKSTGHPLHEPLAS", "length": 455, "header": "tr|F1RGP3-1|F1RGP3_PIG Computationally mapped isoform of SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) OS=Sus scrofa OX=9823 GN=SPNS3 PE=3 SV=4 CANONICAL=A0A5G2QYF5-1" }, "locus": { "chromosome": "12", "start_pos": 50443321, "end_pos": 50389197, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019457.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019457.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018940.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018940.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYF5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 527, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYF5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYF5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF5" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 490, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYF8-1", "uniprot_ac": "A0A5G2QYF8", "uniprot_id": "A0A5G2QYF8_PIG", "mass": { "chemical_mass": 32867.0, "monoisotopic_mass": 32867.0 }, "refseq": { "ac": "XP_020934392", "name": "protein FAM221A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934392" }, "gene_names": [ { "name": "FAM221A", "type": "recommended", "evidence": [ { "id": "A0A5G2QYF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8" } ] }, { "name": "FAM221A", "type": "synonym", "evidence": [ { "id": "XP_020934392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934392" } ] } ], "protein_names": [ { "name": "Protein FAM221A", "type": "recommended", "evidence": [ { "id": "A0A5G2QYF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8/entry#names_and_taxonomy" } ] }, { "name": "protein FAM221A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020934392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934392" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM221A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8", "locus": { "chromosome": "18", "start_pos": 48384485, "end_pos": 48413065, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038792", "url": "https://www.ensembl.org/id/ENSSSCG00000038792" } ] } } ], "crossref": [ { "id": "A0A5G2QYF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257521", "url": "https://www.ncbi.nlm.nih.gov/gene/110257521", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110257521", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257521", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCFCKHR", "url": "https://omabrowser.org/oma/group/LCFCKHR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BQD3", "url": "https://www.orthodb.org/?gene=A0A287BQD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31214:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31214:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQD3", "url": "https://www.uniprot.org/uniprotkb/A0A287BQD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERLTLPPGGAAAVDEYLEYRRIVGEDDGGKQFTPEEYEEYKRKVIPIRLLNRLFVSWRSPTGVDCKLVGPETLCFCTHRYKQHKTDFEVIPQRRPISLPCRVPGCLCRAYLYVPLSGAQPIRCRCKHLADQHSAAPGLVCNACSKCSGFHSCFTCACGQPAHAHDTVVETKQERLAQGKPVGRDVPYAAMGGLTGFSSLAEGYLRLDDSGIGAPSVEVLDASVTATDHPFLRAFQASSNSPPETLRDGGTSSQVPSLRKPEEDDMAFFERRYQERIKMEKAAKQKGKAPLSSTTRPS", "length": 298, "header": "tr|A0A5G2QYF8-1|A0A5G2QYF8_PIG Isoform 1 of Protein FAM221A OS=Sus scrofa OX=9823 GN=FAM221A PE=3 SV=2 CANONICAL=A0A5G2QYF8-1" }, "isoforms": [ { "isoform_ac": "A0A287BQD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQD3/entry", "sequence": { "sequence": "MERLTLPPGGAAAVDEYLEYRRIVGEDDGGKQFTPEEYEEYKRKVIPIRLLNRLFVSWRSPTGVDCKLVGPETLCFCTHRYKQHKTDFEVIPQRRPISLPCRVPGCLCRAYLYVPLSGAQPIRCRCKHLADQHSAAPGLVCNACSKCSGFHSCFTCACGQPAHAHDTVVETKQERLAQGKPVGRDVPYAAMGGLTGFSSLAEGYLRLDDSGIGAPSVEVLDASVTATDHPFLRAFQASSNSPPETLRDGGTSSQVPSLRKPEEDDMAFFERRYQERVLLKSALALREKEMEKRRGRRVGNMHIRTSHILEMQLGPFNHQILASEFFSLTTK", "length": 331, "header": "tr|A0A287BQD3-1|A0A287BQD3_PIG Computationally mapped isoform of Protein FAM221A OS=Sus scrofa OX=9823 GN=FAM221A PE=3 SV=1 CANONICAL=A0A5G2QYF8-1" }, "locus": { "chromosome": "18", "start_pos": 48403546, "end_pos": 48385123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049723.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049723.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058641.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058641.1" } ] } }, { "isoform_ac": "A0A5G2QYF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8/entry", "sequence": { "sequence": "MERLTLPPGGAAAVDEYLEYRRIVGEDDGGKQFTPEEYEEYKRKVIPIRLLNRLFVSWRSPTGVDCKLVGPETLCFCTHRYKQHKTDFEVIPQRRPISLPCRVPGCLCRAYLYVPLSGAQPIRCRCKHLADQHSAAPGLVCNACSKCSGFHSCFTCACGQPAHAHDTVVETKQERLAQGKPVGRDVPYAAMGGLTGFSSLAEGYLRLDDSGIGAPSVEVLDASVTATDHPFLRAFQASSNSPPETLRDGGTSSQVPSLRKPEEDDMAFFERRYQERIKMEKAAKQKGKAPLSSTTRPS", "length": 298, "header": "tr|A0A5G2QYF8-1|A0A5G2QYF8_PIG Isoform 1 of Protein FAM221A OS=Sus scrofa OX=9823 GN=FAM221A PE=3 SV=2 CANONICAL=A0A5G2QYF8-1" }, "locus": { "chromosome": "18", "start_pos": 48403546, "end_pos": 48384939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080616.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080616.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069951.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069951.2" } ] } }, { "isoform_ac": "A0A5G2RLA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLA6/entry", "sequence": { "sequence": "IKIYSKARIWTRILRKQPGCCGICGEALRYARSCLAEVLIALQKRLTLPPGGAAAVDEYLEYRRIVGEDDGGKQFTPEEYEEYKRKVIPIRLLNRLFVSWRSPTGVDCKLVGPETLCFCTHRYKQHKTDFEVIPQRRPISLPCRVPGCLCRAYLYVPLSGAQPIRCRCKHLADQHSAAPGLVCNACSKCSGFHSCFTCACGQPAHAHDTVVETKQERLAQGKPVGRDVPYAAMGGLTGFSSLAEGYLRLDDSGIGAPSVEVLDASVTATDHPFLRAFQASSNSPPETLRDGGTSSQVPSLRKPEEDDMAFFERRYQERVSL", "length": 321, "header": "tr|A0A5G2RLA6-1|A0A5G2RLA6_PIG Computationally mapped isoform of Protein FAM221A OS=Sus scrofa OX=9823 GN=FAM221A PE=3 SV=1 CANONICAL=A0A5G2QYF8-1" }, "locus": { "chromosome": "18", "start_pos": 48412839, "end_pos": 48388373, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067097.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067097.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073048.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073048.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYF8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110257521", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110257521", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYF8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 298, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYF8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYF8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYH0-1", "uniprot_ac": "A0A5G2QYH0", "uniprot_id": "A0A5G2QYH0_PIG", "mass": { "chemical_mass": 15728.0, "monoisotopic_mass": 15728.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYH0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QYH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYTFFFLTLSCSMAIINKYTNNKCWRGYGEKGIFLHCWWECKLVQPLWRTVWRYLRKLYIELPHDPTTPLWGIYPDKTFLKKDTRTRMFIAALLTIAKSWKQPKCPSTGDWIRKMWYIFTVEYYSFFF", "length": 128, "header": "tr|A0A5G2QYH0-1|A0A5G2QYH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYH0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0/entry", "sequence": { "sequence": "MYTFFFLTLSCSMAIINKYTNNKCWRGYGEKGIFLHCWWECKLVQPLWRTVWRYLRKLYIELPHDPTTPLWGIYPDKTFLKKDTRTRMFIAALLTIAKSWKQPKCPSTGDWIRKMWYIFTVEYYSFFF", "length": 128, "header": "tr|A0A5G2QYH0-1|A0A5G2QYH0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYH0-1" }, "locus": { "chromosome": "1", "start_pos": 94397372, "end_pos": 94396769, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069464.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069464.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069923.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069923.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 128, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYH0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYJ8-1", "uniprot_ac": "A0A5G2QYJ8", "uniprot_id": "A0A5G2QYJ8_PIG", "mass": { "chemical_mass": 34593.0, "monoisotopic_mass": 34593.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LINE-1 type transposase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QYJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYJ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYJ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046748", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046748", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKLRNHPQSNQQENSPQTVNNETDLCRLTDLEFKREIGKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAETQTELTAVKTRMNNAEEQISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNRKLANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGSKIQEAQRAPNKLNPNRPTPTHIIIKMAKVSDKERILKAAREKQNVTHKGTPIRISADISTETLQARREWQEIFKVLKGKNMQSRILYPARISFKIEGEIKIFPNKRKLKEYSNTKPRLKEILKELL", "length": 296, "header": "tr|A0A5G2QYJ8-1|A0A5G2QYJ8_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QYJ8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8/entry", "sequence": { "sequence": "MKKLRNHPQSNQQENSPQTVNNETDLCRLTDLEFKREIGKILKELREDMNSNADTLRKELENIRRSQEKLEHSFAETQTELTAVKTRMNNAEEQISDMEDRIMEITQSGQQTENRIKKLESNIRDLWDNRKLANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGSKIQEAQRAPNKLNPNRPTPTHIIIKMAKVSDKERILKAAREKQNVTHKGTPIRISADISTETLQARREWQEIFKVLKGKNMQSRILYPARISFKIEGEIKIFPNKRKLKEYSNTKPRLKEILKELL", "length": 296, "header": "tr|A0A5G2QYJ8-1|A0A5G2QYJ8_PIG Isoform 1 of LINE-1 type transposase domain-containing protein 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QYJ8-1" }, "locus": { "chromosome": "10", "start_pos": 19289969, "end_pos": 19289082, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101675.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101675.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079920.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079920.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYJ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 296, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYJ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYJ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 133, "end_pos": 227, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QYJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ8" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 294, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYL1-1", "uniprot_ac": "A0A5G2QYL1", "uniprot_id": "A0A5G2QYL1_PIG", "mass": { "chemical_mass": 148646.0, "monoisotopic_mass": 148646.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QYL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QYL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYL1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYL1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047038", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047038", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRLAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHTKKIIHHDQVGFIPGSQGWFNICKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGTEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIRETQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QYL1-1|A0A5G2QYL1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QYL1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1/entry", "sequence": { "sequence": "MAINNHLSIITLNVNGLNAPIKRHRLAEWIKRQKPSICCLQETHLRTKDTYRLKVKGWGKVFHANRHDRKAGVATLISDKIDFKTKDIKKDKEGHYLMIKGSIQGEDVTIINIYAPNIGAPRYIQQILTDIKGDIDENTIIVGDLNTPLTSMDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKSEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNAMKLEINHGKRKEKKPTPWRLNNMLLKNQWVNEEIKKEIKNYLETNDNEDTTSQNLWDAAKAVLRGKFIAIQAFLKKEERSQIDNLTLHLNELEKEEQRSPKVSRRKEIVKIKEEINKIETQKTIEKINKTKSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHTKKIIHHDQVGFIPGSQGWFNICKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGTEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIRETQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 1272, "header": "tr|A0A5G2QYL1-1|A0A5G2QYL1_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QYL1-1" }, "locus": { "chromosome": "11", "start_pos": 57673943, "end_pos": 57670128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080049.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080049.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070001.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070001.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 745, "end_pos": 747, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYL1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYL1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYL1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYL1" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 497, "end_pos": 772, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 745, "end_pos": 747 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYM5-1", "uniprot_ac": "A0A5G2QYM5", "uniprot_id": "A0A5G2QYM5_PIG", "mass": { "chemical_mass": 13629.0, "monoisotopic_mass": 13629.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044822", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044822", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QYM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRLAIINKSTNNKCWRGYREKGTFLHCWWESKLVQSLWKTVWSFFRKLNIELPYDSVILLLGIYLDKTFIQKDTCTCMFTAALFTIARTWNQPKCPLTDDCISRCGTHIQWNTI", "length": 115, "header": "tr|A0A5G2QYM5-1|A0A5G2QYM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYM5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5/entry", "sequence": { "sequence": "MVRLAIINKSTNNKCWRGYREKGTFLHCWWESKLVQSLWKTVWSFFRKLNIELPYDSVILLLGIYLDKTFIQKDTCTCMFTAALFTIARTWNQPKCPLTDDCISRCGTHIQWNTI", "length": 115, "header": "tr|A0A5G2QYM5-1|A0A5G2QYM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYM5-1" }, "locus": { "chromosome": "13", "start_pos": 142882916, "end_pos": 142882572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077453.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077453.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067047.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067047.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 115, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYM5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYQ9-1", "uniprot_ac": "A0A5G2QYQ9", "uniprot_id": "A0A5G2QYQ9_PIG", "mass": { "chemical_mass": 28300.0, "monoisotopic_mass": 28300.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9", "locus": {} } ], "crossref": [ { "id": "IPR018903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31813:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31813:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESESESEASPRLHQEAEPAACAAAAALPSVVGLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 271, "header": "tr|A0A5G2QYQ9-1|A0A5G2QYQ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QYQ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9/entry", "sequence": { "sequence": "MGRRPRSPSAADPAGRWGPEPGGPGPAKRRRPGEPSGPESESESESESESESESEASPRLHQEAEPAACAAAAALPSVVGLAAGCALYLALGDVDLLLEPEPTAARQVSVGDRLLVLVPEALLGSGAEGAWGPGLPPGAFLSAPGEALALGEGFFCVAVPEVVIQAEAQEVEDAAAQFQAPALHEADVCDDPQGFNPEPWPHAVHPSPQRRSPHHHSKLDLHLLAPLRDVSEDDHEAPLQCLPASPCPGPQGRPPRPQGPLRKARRRLILD", "length": 271, "header": "tr|A0A5G2QYQ9-1|A0A5G2QYQ9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2QYQ9-1" }, "locus": { "chromosome": "13", "start_pos": 79857258, "end_pos": 79856293, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063360.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063360.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 103, "start_aa": "Thr", "end_pos": 103, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr103", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 103 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYR7-1", "uniprot_ac": "A0A5G2QYR7", "uniprot_id": "A0A5G2QYR7_PIG", "mass": { "chemical_mass": 22378.0, "monoisotopic_mass": 22378.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYR7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050098", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050098", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QYR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLFQGKFCPDICPSGIAGSYGSSIYSFLRYLHTVLHSGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVSWYLMVVLICISLIIRDVEHFFMCLLAICISSLEKCLFRSFVHFSIGLAFLLLSCISCLYILEIKPLSVASFETLFSHSVSCLFGFLCCVKAFQFDRSHWFIFVFISVALGDFFYLRKHL", "length": 196, "header": "tr|A0A5G2QYR7-1|A0A5G2QYR7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYR7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7/entry", "sequence": { "sequence": "MCLFQGKFCPDICPSGIAGSYGSSIYSFLRYLHTVLHSGCTSLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTGVSWYLMVVLICISLIIRDVEHFFMCLLAICISSLEKCLFRSFVHFSIGLAFLLLSCISCLYILEIKPLSVASFETLFSHSVSCLFGFLCCVKAFQFDRSHWFIFVFISVALGDFFYLRKHL", "length": 196, "header": "tr|A0A5G2QYR7-1|A0A5G2QYR7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYR7-1" }, "locus": { "chromosome": "9", "start_pos": 126873800, "end_pos": 126872504, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089747.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089747.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070056.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070056.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYR7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYR7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYR7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYU2-1", "uniprot_ac": "A0A5G2QYU2", "uniprot_id": "A0A5G2QYU2_PIG", "mass": { "chemical_mass": 20920.0, "monoisotopic_mass": 20920.0 }, "refseq": {}, "gene_names": [ { "name": "CSRP2", "type": "recommended", "evidence": [ { "id": "A0A5G2QYU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ] } ], "protein_names": [ { "name": "Cysteine and glycine-rich protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QYU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2/entry#names_and_taxonomy" } ] }, { "name": "Cysteine-rich protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QYU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Could play a role in neuronal development.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FFX7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX7#function" }, { "database": "UniProtKB", "id": "ARBA00037596", "url": "https://www.uniprot.org/uniprotkb/ARBA00037596#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CSRP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2", "locus": { "chromosome": "5", "start_pos": 104295141, "end_pos": 104273168, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000951", "url": "https://www.ensembl.org/id/ENSSSCG00000000951" } ] } } ], "crossref": [ { "id": "A0A5G2QYU2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYU2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000951", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000951", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09480", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09480", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09840", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09840", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153630", "url": "https://www.ncbi.nlm.nih.gov/gene/100153630", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CKTDYDR", "url": "https://omabrowser.org/oma/group/CKTDYDR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R9G8", "url": "https://www.orthodb.org/?gene=A0A5G2R9G8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24215:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24215:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9G8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFX7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG87", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG87-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYJ8", "url": "https://www.uniprot.org/uniprotkb/F1RYJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPEGVQPHRPTTNPNTSKFAQKYGGAEKCPRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 193, "header": "tr|A0A5G2QYU2-1|A0A5G2QYU2_PIG Isoform 1 of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=1 CANONICAL=A0A5G2QYU2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2/entry", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPEGVQPHRPTTNPNTSKFAQKYGGAEKCPRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 193, "header": "tr|A0A5G2QYU2-1|A0A5G2QYU2_PIG Isoform 1 of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=1 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294911, "end_pos": 104285499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081503.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081503.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067108.1" } ] } }, { "isoform_ac": "A0A5G2R9G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G8/entry", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPEGDVQPHRPTTNPNTSKFAQKYGGAEKCPRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 194, "header": "tr|A0A5G2R9G8-1|A0A5G2R9G8_PIG Computationally mapped isoform of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=1 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294911, "end_pos": 104285499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090556.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090556.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072964.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072964.1" } ] } }, { "isoform_ac": "A0A5G2R9M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9M9/entry", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCSKCPRGRLTGLRQIQTLRNLLRNTEVLRSVPDAGTLCTLLRRSLVLESPGTKTVSDVLSVARVLNQQL", "length": 105, "header": "tr|A0A5G2R9M9-1|A0A5G2R9M9_PIG Computationally mapped isoform of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=2 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294008, "end_pos": 104285499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084474.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084474.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067305.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067305.2" } ] } }, { "isoform_ac": "A0A8W4FFX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFX7/entry", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPSVQPHRPTTNPNTSKFAQKYGGAEKCPRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGNIKFSYCPYEYPTQAVE", "length": 185, "header": "tr|A0A8W4FFX7-1|A0A8W4FFX7_PIG Computationally mapped isoform of Cysteine and glycine-rich protein 1 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=1 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294096, "end_pos": 104285499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096521.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096521.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077223.1" } ] } }, { "isoform_ac": "A0A8W4FG87-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG87/entry", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPSVQPHRPTTNPNTSKFAQKYGGAEKCPRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 192, "header": "tr|A0A8W4FG87-1|A0A8W4FG87_PIG Computationally mapped isoform of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=1 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294913, "end_pos": 104285499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099668.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099668.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078444.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078444.1" } ] } }, { "isoform_ac": "F1RYJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ8/entry", "sequence": { "sequence": "MMPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPEVFSLTGLRQIQTLRNLLRNTEVLRSVPDAGTLCTLLRRSLVLESPGTKTVSDVLSVARVLNQQL", "length": 158, "header": "tr|F1RYJ8-1|F1RYJ8_PIG Computationally mapped isoform of Cysteine and glycine-rich protein 2 OS=Sus scrofa OX=9823 GN=CSRP2 PE=1 SV=3 CANONICAL=A0A5G2QYU2-1" }, "locus": { "chromosome": "5", "start_pos": 104294008, "end_pos": 104285382, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001040.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001040.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001018.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001018.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "P50460-1", "protein_name": "Cysteine and glycine-rich protein 2", "gene_name": "CSRP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 194 }, "evidence": [ { "id": "A0A5G2QYU2", "url": "https://omabrowser.org/oma/group/A0A5G2QYU2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P97314-1", "protein_name": "Cysteine and glycine-rich protein 2", "gene_name": "Csrp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 193 }, "evidence": [ { "id": "A0A5G2QYU2", "url": "https://omabrowser.org/oma/group/A0A5G2QYU2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q16527-1", "protein_name": "Cysteine and glycine-rich protein 2", "gene_name": "CSRP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ", "length": 193 }, "evidence": [ { "id": "A0A5G2QYU2", "url": "https://omabrowser.org/oma/group/A0A5G2QYU2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9BIW5-1", "protein_name": "LIM domain-containing protein C", "gene_name": "limC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSICPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPVEPTPPPTFLTPTEEVKVQLFPTNCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSGYTNTGALVLH", "length": 182 }, "evidence": [ { "id": "A0A5G2QYU2", "url": "https://omabrowser.org/oma/group/A0A5G2QYU2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9M047-1", "protein_name": "LIM domain-containing protein WLIM2b", "gene_name": "WLIM2B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAAAAVAAGVPAASVPES", "length": 199 }, "evidence": [ { "id": "A0A5G2QYU2", "url": "https://omabrowser.org/oma/group/A0A5G2QYU2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "structural constituent of muscle", "id": "GO:0008307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008307", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "actinin binding", "id": "GO:0042805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042805", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "muscle tissue development", "id": "GO:0060537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060537", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYU2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 193, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYU2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYU2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYU2" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 68, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYV1-1", "uniprot_ac": "A0A5G2QYV1", "uniprot_id": "A0A5G2QYV1_PIG", "mass": { "chemical_mass": 9199.0, "monoisotopic_mass": 9199.0 }, "refseq": {}, "gene_names": [ { "name": "C2H5orf46", "type": "recommended", "evidence": [ { "id": "A0A5G2QYV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1" } ] }, { "name": "C5orf46", "type": "synonym", "evidence": [ { "id": "A0A5G2QYV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1" } ] } ], "protein_names": [ { "name": "Chromosome 2 C5orf46 homolog", "type": "synonym", "evidence": [ { "id": "A0A5G2QYV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2H5orf46", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYV1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034399", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034399", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622840", "url": "https://www.ncbi.nlm.nih.gov/gene/100622840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027950", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027950", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622840", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QYV1", "url": "https://www.orthodb.org/?gene=A0A5G2QYV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37864", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37864", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37864:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37864:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVSVLRLTAFLGLLILTLTCQADVKPDVKPSDSGKNPEPEFPKFLNLLGSEIIENAVEFILRSVTRTSGFVELDDKRGEHAAK", "length": 84, "header": "tr|A0A5G2QYV1-1|A0A5G2QYV1_PIG Isoform 1 of Chromosome 2 C5orf46 homolog OS=Sus scrofa OX=9823 GN=C2H5orf46 PE=4 SV=1 CANONICAL=A0A5G2QYV1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1/entry", "sequence": { "sequence": "MAVSVLRLTAFLGLLILTLTCQADVKPDVKPSDSGKNPEPEFPKFLNLLGSEIIENAVEFILRSVTRTSGFVELDDKRGEHAAK", "length": 84, "header": "tr|A0A5G2QYV1-1|A0A5G2QYV1_PIG Isoform 1 of Chromosome 2 C5orf46 homolog OS=Sus scrofa OX=9823 GN=C2H5orf46 PE=4 SV=1 CANONICAL=A0A5G2QYV1-1" }, "locus": { "chromosome": "2", "start_pos": 149151388, "end_pos": 149141971, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089714.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089714.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070086.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070086.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622840", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYV1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 84, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYV1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYV1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYW9-1", "uniprot_ac": "A0A5G2QYW9", "uniprot_id": "A0A5G2QYW9_PIG", "mass": { "chemical_mass": 55161.0, "monoisotopic_mass": 55161.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Tripartite motif-containing protein 75", "type": "recommended", "evidence": [ { "id": "A0A5G2QYW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYW9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16594", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16594", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GSSHARGRIGAGAAGAASLAQLQAEASCPICLDYLRDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLQHCPDRSLRRNTQLCHMVDVVKQLPNTEGEGKQQEEKPLCEKHHQVLSLFCEEDLELLCPQCQVSCDHQDHHLVPMEQAAACHRKRLKGSIEHLTKQFKEANKALEIKVLELREHVQRQRLELASDFAQLNRAVDREQEAALARLVQEEHTIHEQLGANIAAFSDHIWELRGLLQEVTERSVLPGAQLLRGIGPVLGRCESLKCPEVYSFQLRREGCSLPAQHSALQKIIQKFTEDVILDPESAHPDLLVSEDRKSATLARKRQGVPRAGRSGAEPAVLGLGGFGRGRRYWEVRVGGATWAVGLCTDSAPRPRAWLLEDPRGSWTVGRREGAYEARGPAGTVPLELKEDPGGIGVYLDYELGVISFYSFKDRSHIYSFSDTFSEVLKPYFSIGCSSQPLTIYWIKTYRYRSSHRGSVKEPDWHP", "length": 493, "header": "tr|A0A5G2QYW9-1|A0A5G2QYW9_PIG Isoform 1 of Tripartite motif-containing protein 75 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYW9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9/entry", "sequence": { "sequence": "GSSHARGRIGAGAAGAASLAQLQAEASCPICLDYLRDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLQHCPDRSLRRNTQLCHMVDVVKQLPNTEGEGKQQEEKPLCEKHHQVLSLFCEEDLELLCPQCQVSCDHQDHHLVPMEQAAACHRKRLKGSIEHLTKQFKEANKALEIKVLELREHVQRQRLELASDFAQLNRAVDREQEAALARLVQEEHTIHEQLGANIAAFSDHIWELRGLLQEVTERSVLPGAQLLRGIGPVLGRCESLKCPEVYSFQLRREGCSLPAQHSALQKIIQKFTEDVILDPESAHPDLLVSEDRKSATLARKRQGVPRAGRSGAEPAVLGLGGFGRGRRYWEVRVGGATWAVGLCTDSAPRPRAWLLEDPRGSWTVGRREGAYEARGPAGTVPLELKEDPGGIGVYLDYELGVISFYSFKDRSHIYSFSDTFSEVLKPYFSIGCSSQPLTIYWIKTYRYRSSHRGSVKEPDWHP", "length": 493, "header": "tr|A0A5G2QYW9-1|A0A5G2QYW9_PIG Isoform 1 of Tripartite motif-containing protein 75 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYW9-1" }, "locus": { "chromosome": "8", "start_pos": 44090132, "end_pos": 44049575, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072621.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072621.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069338.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069338.1" } ] } }, { "isoform_ac": "A0A5G2R7S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S8/entry", "sequence": { "sequence": "MGNSSAASLAQLQAEASCPICLDYLRDPVTTDCGHNFCHSCLLQRWEGLQGDFPCPVCLQHCPDRSLRRNTQLCHMVDVVKQLPNTEGEGKQQEEKPLCEKHHQVLSLFCEEDLELLCPQCQVSCDHQDHHLVPMEQAAACHRKRLKGSIEHLTKQFKEANKALEIKVLELREHVQRQRLELASDFAQLNRAVDREQEAALARLVQEEHTIHEQLGANIAAFSDHIWELRGLLQEVTERSVLPGAQLLRGIGPVLGRCESLKCPEVYSFQLRREGCSLPAQHSALQKIIQKFTEDVILDPESAHPDLLVSEDRKSATLARKRQGVPRAGRSGAEPAVLGLGGFGRGRRYWEVRVGGATWAVGLCTDSAPRPRAWLLEDPRGSWTVGRREGAYEARGPAGTVPLELKEDPGGIGVYLDYELGVISFYSFKDRSHIYSFSDTFSEVLKPYFSIGCSSQPLTIYWIKTYRYRSSHRGSVKEPDWHP", "length": 483, "header": "tr|A0A5G2R7S8-1|A0A5G2R7S8_PIG Computationally mapped isoform of Tripartite motif-containing protein 75 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYW9-1" }, "locus": { "chromosome": "8", "start_pos": 44089851, "end_pos": 44049575, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090095.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090095.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070182.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070182.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 493, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYW9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QYW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 145, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QYW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 286, "end_pos": 477, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QYW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYW9" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 68, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QYX9-1", "uniprot_ac": "A0A5G2QYX9", "uniprot_id": "A0A5G2QYX9_PIG", "mass": { "chemical_mass": 12244.0, "monoisotopic_mass": 12244.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QYX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9", "locus": {} } ], "crossref": [ { "id": "A0A5G2QYX9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046147", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046147", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QYX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYPDKTIIQKDTCTPIFIAALFTKAKTWKQPKCTLTDEWIKKMWYIYTMEYYSATKSEIMSFAATLRDLEIIIPSEVSSEEEDTYMYDITYTCNLKYDTDEHT", "length": 103, "header": "tr|A0A5G2QYX9-1|A0A5G2QYX9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYX9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9/entry", "sequence": { "sequence": "MYPDKTIIQKDTCTPIFIAALFTKAKTWKQPKCTLTDEWIKKMWYIYTMEYYSATKSEIMSFAATLRDLEIIIPSEVSSEEEDTYMYDITYTCNLKYDTDEHT", "length": 103, "header": "tr|A0A5G2QYX9-1|A0A5G2QYX9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QYX9-1" }, "locus": { "chromosome": "1", "start_pos": 17959122, "end_pos": 17958814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095666.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095666.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079969.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079969.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYX9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QYX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 103, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QYX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QYX9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ01-1", "uniprot_ac": "A0A5G2QZ01", "uniprot_id": "A0A5G2QZ01_PIG", "mass": { "chemical_mass": 37395.0, "monoisotopic_mass": 37395.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds to extracellular matrix proteins. Binds to pathogen-associated molecular patterns (PAMPs) present on the cell walls of Gram-positive and Gram-negative bacteria and fungi, behaving as a pattern recognition receptor (PRR). Induces bacterial and fungal aggregation and subsequent inhibition of PAMP-induced cytokine release. Does not possess intrinsic bactericidal activity. May play a role in the innate defense and homeostasis of certain epithelial surfaces.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01#function" }, { "database": "UniProtKB", "id": "ARBA00058074", "url": "https://www.uniprot.org/uniprotkb/ARBA00058074#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ01", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049267", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049267", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47653", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47653", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47653:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47653:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQCTPVAKCLQGTESALLQALMEDMYIKAPGNPFPQESKLRLVGGSGRFSGRVEVLHQGAWGTVCDDLWDLNEAEVVCWPLGCGRAVSALGKAHFGLGSGDILLDNIQCSGSESHLGQCPSSGWSDHNCGHHEDAGDRVSSPASLFPGALGASLRLGNGSHRCEGRVEVFYSGTWGTLGCGEALSAPAQSYFDRGTGHITLDDVKCTGNETKLWQCPHNGWFSHNCGHHEDASVICSDVALRLANGSHPCEGRVELHFNGSWGTVCDDGWDLRDAEVVCRQLACGGAVAAPERARFGRGLGPIALDDVDCVGTEARLWQCLHGGWFSHNCGHHEDASVVCSGGPDSEAGRAK", "length": 353, "header": "tr|A0A5G2QZ01-1|A0A5G2QZ01_PIG Isoform 1 of Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ01-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01/entry", "sequence": { "sequence": "MAQCTPVAKCLQGTESALLQALMEDMYIKAPGNPFPQESKLRLVGGSGRFSGRVEVLHQGAWGTVCDDLWDLNEAEVVCWPLGCGRAVSALGKAHFGLGSGDILLDNIQCSGSESHLGQCPSSGWSDHNCGHHEDAGDRVSSPASLFPGALGASLRLGNGSHRCEGRVEVFYSGTWGTLGCGEALSAPAQSYFDRGTGHITLDDVKCTGNETKLWQCPHNGWFSHNCGHHEDASVICSDVALRLANGSHPCEGRVELHFNGSWGTVCDDGWDLRDAEVVCRQLACGGAVAAPERARFGRGLGPIALDDVDCVGTEARLWQCLHGGWFSHNCGHHEDASVVCSGGPDSEAGRAK", "length": 353, "header": "tr|A0A5G2QZ01-1|A0A5G2QZ01_PIG Isoform 1 of Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ01-1" }, "locus": { "chromosome": "14", "start_pos": 132436251, "end_pos": 132421061, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090566.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090566.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070108.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 353, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ01" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ01" }, { "id": "PS50287", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRCR", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 141, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 260, "end_pos": 262 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ07-1", "uniprot_ac": "A0A5G2QZ07", "uniprot_id": "A0A5G2QZ07_PIG", "mass": { "chemical_mass": 52527.0, "monoisotopic_mass": 52527.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "GRIP domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ07", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050573", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050573", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18921:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18921:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSKSDVCTLQEEKGKRVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTVLTQRERDEAMLLLKRKQLENAALQSQVQHFHEKELSFKKDLERLSHQAVHSEKSYKLQTLMAEERAAQLGMRVSTLEEKLLLASRALEEASQQLSLSQQQEKQAVQALANMKTVLAEWMAKADHLEGQLLLAHKLQEKVQAALHGKEDQIRDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKAQRPEVFQIIGSTLGIKREAMQVLLNEEQGSGPRWMTRWLGSKSGPGTPLEPNQQSAMPKMSFSELFVKYLDTESHHTLPLLKPSAPDVKRSNAAGRKKPAQNIQLHLQTTLGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 469, "header": "tr|A0A5G2QZ07-1|A0A5G2QZ07_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ07-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ07-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07/entry", "sequence": { "sequence": "MNSKSDVCTLQEEKGKRVEKCKEREMETQALQETNVQLSMMLREKDSEIVTIKEKALALEHLLKEQEHGNTEQLSQILNALTATQEKTVLTQRERDEAMLLLKRKQLENAALQSQVQHFHEKELSFKKDLERLSHQAVHSEKSYKLQTLMAEERAAQLGMRVSTLEEKLLLASRALEEASQQLSLSQQQEKQAVQALANMKTVLAEWMAKADHLEGQLLLAHKLQEKVQAALHGKEDQIRDLKKQTAVQQEVLDDLQEKLMNLRSDAEGKVDKSLMKNLFMGYFQTPKAQRPEVFQIIGSTLGIKREAMQVLLNEEQGSGPRWMTRWLGSKSGPGTPLEPNQQSAMPKMSFSELFVKYLDTESHHTLPLLKPSAPDVKRSNAAGRKKPAQNIQLHLQTTLGSTPKKPEVKVGSLSLSLVNPPGPEPGGSGHLLLNAITDVVPTYPPLLLPPGKNAGAGLKDLSKQRMVL", "length": 469, "header": "tr|A0A5G2QZ07-1|A0A5G2QZ07_PIG Isoform 1 of GRIP domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ07-1" }, "locus": { "chromosome": "AEMK02000156.1", "start_pos": 55616, "end_pos": 53989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072436.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072436.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070131.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070131.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ07" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ07" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 315, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ11-1", "uniprot_ac": "A0A5G2QZ11", "uniprot_id": "A0A5G2QZ11_PIG", "mass": { "chemical_mass": 12247.0, "monoisotopic_mass": 12247.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ11", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ11", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050722", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050722", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZ11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISNVEHFFMCLLAILKCILKFALISVSAK", "length": 108, "header": "tr|A0A5G2QZ11-1|A0A5G2QZ11_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ11-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPFSPQPLQHLLFVDLLMMAILTGVRWYLMVVLICISLIISNVEHFFMCLLAILKCILKFALISVSAK", "length": 108, "header": "tr|A0A5G2QZ11-1|A0A5G2QZ11_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ11-1" }, "locus": { "chromosome": "1", "start_pos": 214456846, "end_pos": 214456523, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095995.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095995.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075287.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075287.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 108, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ11-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ11" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ18-1", "uniprot_ac": "A0A5G2QZ18", "uniprot_id": "A0A5G2QZ18_PIG", "mass": { "chemical_mass": 80952.0, "monoisotopic_mass": 80952.0 }, "refseq": {}, "gene_names": [ { "name": "HELLS", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ] } ], "protein_names": [ { "name": "Proliferation-associated SNF2-like protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "ATP-dependent chromatin remodeler that regulates chromatin accessibility, DNA methylation, and histone modifications. It facilitates de novo DNA methylation at repetitive sequences and promotes transcriptional silencing via recruitment of DNA methyltransferases (DNMTs) and histone deacetylases (HDACs), contributing to heterochromatin formation and repression of transposable elements. Also involved in DNA repair by recruiting DNA damage response mediators to double-strand breaks in heterochromatin, promoting homologous recombination via RBBP8/CtIP-dependent end resection. During meiosis, it is recruited by PRDM9 to recombination hotspots, aiding chromatin opening. Through these diverse roles, is crucial for processes such as development, differentiation, and genomic stability. Involved in regulation of the expansion or survival of lymphoid cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18#function" }, { "database": "UniProtKB", "id": "ARBA00094428", "url": "https://www.uniprot.org/uniprotkb/ARBA00094428#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HELLS", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18", "locus": { "chromosome": "14", "start_pos": 105924536, "end_pos": 105955430, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010486", "url": "https://www.ensembl.org/id/ENSSSCG00000010486" } ] } } ], "crossref": [ { "id": "A0A5G2QZ18", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010486", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010486", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18009", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18009", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038718", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038718", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049730", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049730", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47161:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47161:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVRRIQEILSVAKKNKKETENESSCSNLCVEDLQKNRDSNSIIKDRLSQTVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVELSPTGRPKRRTRKSIDYSKIDDFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNQSKNFLDPKELMELLKSRDYEREVKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPDCLF", "length": 698, "header": "tr|A0A5G2QZ18-1|A0A5G2QZ18_PIG Isoform 1 of Proliferation-associated SNF2-like protein OS=Sus scrofa OX=9823 GN=HELLS PE=3 SV=1 CANONICAL=A0A5G2QZ18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ18-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18/entry", "sequence": { "sequence": "MQVRRIQEILSVAKKNKKETENESSCSNLCVEDLQKNRDSNSIIKDRLSQTVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVELSPTGRPKRRTRKSIDYSKIDDFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNQSKNFLDPKELMELLKSRDYEREVKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPDCLF", "length": 698, "header": "tr|A0A5G2QZ18-1|A0A5G2QZ18_PIG Isoform 1 of Proliferation-associated SNF2-like protein OS=Sus scrofa OX=9823 GN=HELLS PE=3 SV=1 CANONICAL=A0A5G2QZ18-1" }, "locus": { "chromosome": "14", "start_pos": 105955414, "end_pos": 105924999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078135.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078135.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063480.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063480.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "pericentric heterochromatin formation", "id": "GO:0031508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "lymphocyte proliferation", "id": "GO:0046651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046651", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "DNA methylation-dependent constitutive heterochromatin formation", "id": "GO:0006346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006346", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "negative regulation of gene expression via chromosomal CpG island methylation", "id": "GO:0044027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "chromatin-protein adaptor activity", "id": "GO:0140463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140463", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" }, { "name": "pericentric heterochromatin", "id": "GO:0005721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005721", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ18", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 501, "end_pos": 503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 698, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ18" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 264, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QZ18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ18" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 464, "end_pos": 613, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 501, "end_pos": 503 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 620, "end_pos": 622 }, { "start_pos": 671, "end_pos": 673 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ38-1", "uniprot_ac": "A0A5G2QZ38", "uniprot_id": "A0A5G2QZ38_PIG", "mass": { "chemical_mass": 10677.0, "monoisotopic_mass": 10677.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ38", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043871", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043871", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR034884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051389", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051389", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48416:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48416:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZ38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMSQLTRFSFILDPLGSLTKPQTRAFILPLGCAMFCNFAVAEPSKKVHADFYRNYDSIKDVEEMGKAGLFQRGSDVGVSRVSLGCVSWQLVTYLCS", "length": 96, "header": "tr|A0A5G2QZ38-1|A0A5G2QZ38_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QZ38-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ38-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38/entry", "sequence": { "sequence": "MMSQLTRFSFILDPLGSLTKPQTRAFILPLGCAMFCNFAVAEPSKKVHADFYRNYDSIKDVEEMGKAGLFQRGSDVGVSRVSLGCVSWQLVTYLCS", "length": 96, "header": "tr|A0A5G2QZ38-1|A0A5G2QZ38_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QZ38-1" }, "locus": { "chromosome": "8", "start_pos": 131842643, "end_pos": 131842172, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074557.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074557.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067208.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067208.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "oxidative phosphorylation", "id": "GO:0006119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006119", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ38", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 96, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ38" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV62-1", "uniprot_ac": "A0A5G2QV62", "uniprot_id": "A0A5G2QV62_PIG", "mass": { "chemical_mass": 64212.0, "monoisotopic_mass": 64212.0 }, "refseq": { "ac": "XP_003133387", "name": "DNA-directed primase/polymerase protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133387" }, "gene_names": [ { "name": "PRIMPOL", "type": "recommended", "evidence": [ { "id": "A0A5G2QV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ] }, { "name": "PRIMPOL", "type": "synonym", "evidence": [ { "id": "XP_003133387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133387" } ] } ], "protein_names": [ { "name": "DNA-directed primase/polymerase protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.102", "type": "synonym", "evidence": [ { "id": "A0A5G2QV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.7", "type": "synonym", "evidence": [ { "id": "A0A5G2QV62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62/entry#names_and_taxonomy" } ] }, { "name": "DNA-directed primase/polymerase protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003133387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133387" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRIMPOL", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62", "locus": { "chromosome": "15", "start_pos": 45819919, "end_pos": 45709710, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015786", "url": "https://www.ensembl.org/id/ENSSSCG00000015786" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015786", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015786", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22256", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22256", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515586", "url": "https://www.ncbi.nlm.nih.gov/gene/100515586", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515586", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515586", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYEVIQD", "url": "https://omabrowser.org/oma/group/HYEVIQD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QV62", "url": "https://www.orthodb.org/?gene=A0A5G2QV62", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31399:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31399:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01896", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01896", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03121", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03121", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133387", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133387", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "22508", "url": "https://www.rhea-db.org/rhea/22508", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AHK7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV62-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSZ1", "url": "https://www.uniprot.org/uniprotkb/F1RSZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RSZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRKWEAKLKQIEERASLYERKPLSSVYRPRLSKPEEPPSIWKLFHRQSQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYTELWYYYKSRRNLLHCYEVIPENAVCKLYFDLEFNKLANPEADGKKMVALLIEHVCKALQEFYGVNCSAEDVLNLDSSTNEKFSRHLIFQLHDVAFKDNVHVGNFVKKILQPAFHLLAGEDDDMIPETMDHGFSHFPGTQVKQGISLSETSTDKDIGESWSLNSEKLERLGAAKQSSPDLSFLVVKNNTGEKHLFVDLGVYTRNRNFRLYKSSKIGKYVALEVAEDNRFRPIQSKNVSMENQYFLSSLVSNVRFSDTLRILTCDIPQQKRFEYFNSTNTSVETIEGFQCSPYFEIDQFVLSLVNKNDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSNCFPLPPEVCLLSLLKEEEEFTTDETANKETRNPYEAPSRALSKGTFSDVDWDNSIDDTYFLEATEDAELVEAAENSLLGYDGVDEIPDELIIEVLQE", "length": 554, "header": "tr|A0A5G2QV62-1|A0A5G2QV62_PIG Isoform 1 of DNA-directed primase/polymerase protein OS=Sus scrofa OX=9823 GN=PRIMPOL PE=3 SV=2 CANONICAL=A0A5G2QV62-1" }, "isoforms": [ { "isoform_ac": "A0A287AHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHK7/entry", "sequence": { "sequence": "MRGNHCPRCTDQDCPSQKNHPPFGNYFIGNLKLLILLKAVKRAAPMAYGCSQARDPIRATATWDPSHDFDLHHSSLQAGSLTHQVRPGIKPAISSFLVAFVSAAPQQELLKDVHVFALECKVGDGQRIYLVTTYTELWYYYKSRRNLLHCYEVIPENAVCKLYFDLEFNKLANPEADGKKMVALLIEHVCKALQEFYGVNCSAEDVLNLDSSTNEKFSRHLIFQLHDVAFKDNVHVGNFVKKILQPAFHLLAGEDDDMIPETMDHGFSHFPGTQVKQGISLSETSTDKDIGESWSLNSEKLERLGAAKQSSPDLSFLVVKNNTGEKHLFVDLGVYTRNRNFRLYKSSKIGKYVALEVAEDNRFRPIQSKNVSMENQYFLSSLVSNVRFSDTLRILTCDIPQQKRFEYFNSTNTSVETIEGFQCSPYFEIDQFVLSLVNKNDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSNCFPLPPEVCLLSLLKEEEEFTTDETANKETRNPYEAPSRALSKGTFSDVDWDNSIDDTYFLEATEDAELVEAAENSLLGYDGVDEIPDELIIEVLQE", "length": 605, "header": "tr|A0A287AHK7-1|A0A287AHK7_PIG Computationally mapped isoform of DNA-directed primase/polymerase protein OS=Sus scrofa OX=9823 GN=PRIMPOL PE=3 SV=2 CANONICAL=A0A5G2QV62-1" }, "locus": { "chromosome": "15", "start_pos": 45818318, "end_pos": 45769566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047174.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047174.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043476.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043476.2" } ] } }, { "isoform_ac": "A0A5G2QV62-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62/entry", "sequence": { "sequence": "MKRKWEAKLKQIEERASLYERKPLSSVYRPRLSKPEEPPSIWKLFHRQSQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYTELWYYYKSRRNLLHCYEVIPENAVCKLYFDLEFNKLANPEADGKKMVALLIEHVCKALQEFYGVNCSAEDVLNLDSSTNEKFSRHLIFQLHDVAFKDNVHVGNFVKKILQPAFHLLAGEDDDMIPETMDHGFSHFPGTQVKQGISLSETSTDKDIGESWSLNSEKLERLGAAKQSSPDLSFLVVKNNTGEKHLFVDLGVYTRNRNFRLYKSSKIGKYVALEVAEDNRFRPIQSKNVSMENQYFLSSLVSNVRFSDTLRILTCDIPQQKRFEYFNSTNTSVETIEGFQCSPYFEIDQFVLSLVNKNDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSNCFPLPPEVCLLSLLKEEEEFTTDETANKETRNPYEAPSRALSKGTFSDVDWDNSIDDTYFLEATEDAELVEAAENSLLGYDGVDEIPDELIIEVLQE", "length": 554, "header": "tr|A0A5G2QV62-1|A0A5G2QV62_PIG Isoform 1 of DNA-directed primase/polymerase protein OS=Sus scrofa OX=9823 GN=PRIMPOL PE=3 SV=2 CANONICAL=A0A5G2QV62-1" }, "locus": { "chromosome": "15", "start_pos": 45818318, "end_pos": 45769511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069621.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069621.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062062.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062062.2" } ] } }, { "isoform_ac": "F1RSZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RSZ1/entry", "sequence": { "sequence": "MKRKWEAKLKQIEERASLYERKPLSSVYRPRLSKPEEPPSIWKLFHRQSQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYTELWYYYKSRRNLLHCYEVIPENAVCKLYFDLEFNKLANPEADGKKMVALLIEHVCKALQEFYGVNCSAEDVLNLDSSTNEKFSRHLIFQLHDVAFKDNVHVGNFVKKILQPAFHLLAGEDDDMIPETMDHGFSHFPGTQVKQGISLSETSTDKDIGESWSLNSEKLERLGAAKQSSPDLSFLVVKNNTGEKHLFVDLGVYTRNRNFRLYKSSKIGKYVALEVAEDNRFRPIQSKNVSMENQYFLSSLVSNVRFSDTLRILTCDIPQQKRFEYFNSTNTSVETIEGFQCSPYFEIDQFVLSLVNKNDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSNCFPLPPEVCLLSLLKEEEEFTTDETANKETRNPYEAPSRALSKDQQDLTVYPFCI", "length": 512, "header": "tr|F1RSZ1-1|F1RSZ1_PIG Computationally mapped isoform of DNA-directed primase/polymerase protein OS=Sus scrofa OX=9823 GN=PRIMPOL PE=3 SV=3 CANONICAL=A0A5G2QV62-1" }, "locus": { "chromosome": "15", "start_pos": 45818817, "end_pos": 45769511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017189.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017189.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016728.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016728.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515586", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515586", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F471-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "Primpol", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRKWEAMLKQIEERASHYERKPLSSVYRPRLSKPEEPPSIWKLFHRQNQAFNFVKSCKENVHVFALECKAGDGQRIYLVTSYAQLWFYYKFRKTLLHCYEVIPENAVCKLYFDLEFNKLANPGADGKKMVALLIEHVCKALEELYNVHCSVEDVINLDSSTEEKFSRHLIFQLHDVAFKDNTHVGNFVRKILQPALHLITKEDDDKIPEATDHKVSCFSDVPLKQEILETWEKPGSPKQYIPDLSFLVVKNNMGEKCLFVDLGVYTRNRNFRLYRSSKIGKCVALEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRILTCDTSQTKRKRAEYFNSTGTSVESLEGFHCSPYPEVDQFVLSLVNKHDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAQNFKSNCFPLPTEVSLLFLLKEEEFTPDEVGETSNSLTKNSQNPPSSNLLPDSFSDAGWDDQDDACFLEATEDAEFADAADRSLLGYKSAMDDIPDELIIEALQSS", "length": 540 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LRH6-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "Primpol", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMGKWESMVKQIEERASHYERKPLSSVYRPRLSKPEEPSSIWKIFHRQNQAFNFVKSCKESVHVFALEHKMGNGQRIYLVTSYAQFWFYYKTRTTLLHCYEVIPENAVCKLYFDLEFNKLANPGADGKEMVALLVQHVCEALQEIYSVHCSAEDVLNLDSSTEEKFSRHLIFQLHDVAFKDNTHVGNFVRKILQPALHLITKDDEDEITEAVGHEASCFSVTPLKQEISEAWEKLALPKQCDPDLSFLVVKNHKGEKCLFVDLGVYTKNRNFRLYQSSKIGKRVSLEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRILSCDPSQTKRKRVEYSNSAGTSVEPIEGFQASPYPEVDRFVLSLVNKPDTEGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAQNFKSTCFPLPTEVSLLFLLKDEEDFTSGETDEDSNSLTKDFQNPPPCNLSAADWDDGDDACFLEATEDAEFADAADKSVLGSVDDIPDELIIEALQSS", "length": 534 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F4KHM5-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "PRIMPOL", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSKKLSSNSMDDVDRLFQCFKCGISPPASAMREKKRSKKMLNSEYDSPVTCKKLQLSSLSRLSGKRGERNQIDGSVSVDSVSGSRDVKKSVGRQFSPIVFYGSPNGVPPKKPLSLLRLLREIRIDLSEERKAISRKGVWATFPRQEEAIKFEKRHDNVRIFSYQDHFSGQRRFLVSSYEEFWKRYLSMDPRHRHHYEVIQEGLPCHMYFDLEFNQKENEGKNVDEMVDILISVILEALREKYAIEGQEDWIVELDSSTKDKFSRHVIVIIPKVAFKDNSHVGAFVGELCSRIVNAKETDERLRKLFVHKEANDSASLLFVDTAVYSRNRCFRLALSSKAGKTSVLLPTGRFKCKDMGERDVFMTSLICNVESDCEKLLVCKMESDCMKTLCFDTEVNSNNLVRDQNAQKFQLNASTSDMSTSYFGGKSPFPQLDQFIESTASTGNVPGKIRCWYWFSEDGLIVYSMLRNRYCERIGREHKSNHGTICSQPIYDIRVSSMLCNLCTK", "length": 506 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q08DZ8-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "PRIMPOL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKRKWEATLKQIEERASHYERKPLSSVYRPRLSKPEEPPSIWKLFHRQTQAFNFVKSCKQEVHVFALECKVGDGQRIYLVTTYTQLWFYYKSRRNLLHCYEVIPENAVCKLYFDLEFNKLANPGADGKKMVALLIEHVCKALQEFYTVNCSAEDVLNLDSSTEEKFSRHLIFQLHDVAFKDNIHVGNFVRKILQPAFHLIASEDEDMTPETTGHEFTHFSETPSEQGTCFSKMSTDIDVGESQTSNSEKLGRLGSAQQSSPDLSFLIVKNDMGEKRLFVDLGVYTRNRNFRLYKSSKIGKYVALEVAEDNKFFPIQSKNISKENQYFLSSLVSNVRFSDALRILTCDVPQSKQRVQCFSRTGTSVEAIEGFQCSPYPEIDQFVLSLVNKNGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHRSNNIMILVDLKNEVWYQKCHDPVCKAENFKSDCFPLPAEVCLLSLLKEGEEFTTDTTADTETKSPHGPSSSVLSKGAFSDADWDNGIDDTYILEATEDAELAEAAENSLLAYNRMDEIPDELLIEVLQE", "length": 555 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q32PL8-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "primpol", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGGKWQDRVKSVEQRASSFQSSPLSCPYKPRLSQPWQPSSIWRLFPRQNAAIAFAQHIKQDVHIFSLEKEGSDAGQRIFLVTSYSELWHYYSTHRHSLMHCYEVILEGAVCKLYFDLEFHKASNKNLDGKMMVAKLIQYVCEKLEEVYGLHCSAKDVLDLDSSTSDKFSHHLIFMLPNAAFKDNSHVGRFIHDILHPALTNLKKSNPEAPGENRDDVEGTQAKRRKTEENDLGFLTVKNEKGQEQLFVDLGVYTKNRNFRLYKSSKLGKNAAFIVAEDNKFVPNPSKQITKDERIFLASLITNVSFTGQRILTYDMTQKSTAGSECPTLERESHSSDLLGDQKTSPFKEVDEFVLTLVCKDGIQGSIRRWNYFACEQLLVYDIEKFRWCHNVKRFHKSNNIIIVVDLKEEVWYQKCHDPECRRQNYRSSSFPLPQEVCMSHLLMEDEEDQAYLTDELGNIELAVTAPAESTSTTPSEDTEGWGDWPDDPAYLRALQEVEEEEEDEDEEVPDELLLQAVNECE", "length": 523 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P1E7-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "Primpol", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRKWEARVKQIEERASHYERKPLSSVYRPRLAKPEEPSSIWKLFHRQNQAFNFVKSCKESVHVFALECKRGNGQRIYLVTSYAQLWFYYKTRKTLLHCYEVIPENAVCKLYFDLEFNKLANPGADGKMMVALLIQHVCKALEEFYNVQCSAEDVFNLDSSTEEKFSRHLIFQLHNVAFKDNRHAGNFVRKILQPALHLIAEDDEAKVPEAVGQDASGFSVTPLKQEISEAREKVGLPKQCDPDLSFLVVKNHMGEKCLFVDLGVYTKNRNFRLYQSSKIGKCVSLEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRVLTCHPSQTKRKRAECFNSTGTSVESIEGFQGSPYPEVDQFVLSLVNKHDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAQNFKSTCSPLPTEVSLLFLLKDEDFTSGETDDTSTSLTKDSQTPPSCNLSAGGLSAAAWDDEDDALFLEATEDAEFADAADKSLGSMDDIPDELIIEALQNS", "length": 537 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96LW4-1", "protein_name": "DNA-directed primase/polymerase protein", "gene_name": "PRIMPOL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNRKWEAKLKQIEERASHYERKPLSSVYRPRLSKPEEPPSIWRLFHRQAQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYAEFWFYYKSRKNLLHCYEVIPENAVCKLYFDLEFNKPANPGADGKKMVALLIEYVCKALQELYGVNCSAEDVLNLDSSTDEKFSRHLIFQLHDVAFKDNIHVGNFLRKILQPALDLLGSEDDDSAPETTGHGFPHFSEAPARQGFSFNKMFTEKATEESWTSNSKKLERLGSAEQSSPDLSFLVVKNNMGEKHLFVDLGVYTRNRNFRLYKSSKIGKRVALEVTEDNKFFPIQSKDVSDEYQYFLSSLVSNVRFSDTLRILTCEPSQNKQKGVGYFNSIGTSVETIEGFQCSPYPEVDHFVLSLVNKDGIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSDCFPLPAEVCLLFLFKEEEEFTTDEADETRSNETQNPHKPSPSRLSTGASADAVWDNGIDDAYFLEATEDAELAEAAENSLLSYNSEVDEIPDELIIEVLQE", "length": 560 }, "evidence": [ { "id": "A0A5G2QV62", "url": "https://omabrowser.org/oma/group/A0A5G2QV62/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA-directed DNA polymerase activity", "id": "GO:0003887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003887", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "manganese ion binding", "id": "GO:0030145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030145", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase activity", "id": "GO:0003899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003899", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "replication fork", "id": "GO:0005657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005657", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase complex", "id": "GO:0000428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000428", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "response to UV", "id": "GO:0009411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009411", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "translesion synthesis", "id": "GO:0019985", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019985", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "DNA replication, synthesis of primer", "id": "GO:0006269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006269", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "mitochondrial DNA replication", "id": "GO:0006264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006264", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "mitochondrial DNA repair", "id": "GO:0043504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043504", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "error-prone translesion synthesis", "id": "GO:0042276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042276", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "replication fork processing", "id": "GO:0031297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031297", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" }, { "name": "R-loop processing", "id": "GO:0062176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062176", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV62" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "22508", "name": "", "equation": "DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22508", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22508" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 361, "end_pos": 363 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV21-1", "uniprot_ac": "A0A5G2QV21", "uniprot_id": "A0A5G2QV21_PIG", "mass": { "chemical_mass": 18058.0, "monoisotopic_mass": 18058.0 }, "refseq": {}, "gene_names": [ { "name": "ARL2", "type": "recommended", "evidence": [ { "id": "A0A5G2QV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ] } ], "protein_names": [ { "name": "ADP-ribosylation factor-like protein 2", "type": "recommended", "evidence": [ { "id": "A0A5G2QV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21", "locus": { "chromosome": "2", "start_pos": 7157918, "end_pos": 7167212, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034387", "url": "https://www.ensembl.org/id/ENSSSCG00000034387" } ] } } ], "crossref": [ { "id": "A0A5G2QV21", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV21", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034387", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034387", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04154", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04154", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515705", "url": "https://www.ncbi.nlm.nih.gov/gene/100515705", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515705", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515705", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTHHWQI", "url": "https://omabrowser.org/oma/group/KTHHWQI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45697", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45697", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-83936", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-83936", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B226", "url": "https://www.uniprot.org/uniprotkb/A0A287B226", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B226-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B226-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV21-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEEALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFMAD", "length": 157, "header": "tr|A0A5G2QV21-1|A0A5G2QV21_PIG Isoform 1 of ADP-ribosylation factor-like protein 2 OS=Sus scrofa OX=9823 GN=ARL2 PE=1 SV=1 CANONICAL=A0A5G2QV21-1" }, "isoforms": [ { "isoform_ac": "A0A287B226-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B226/entry", "sequence": { "sequence": "MGLIANRSRERGPGTRKKQRLGGGYWDMGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSKAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFMAD", "length": 211, "header": "tr|A0A287B226-1|A0A287B226_PIG Computationally mapped isoform of ADP-ribosylation factor-like protein 2 OS=Sus scrofa OX=9823 GN=ARL2 PE=1 SV=1 CANONICAL=A0A5G2QV21-1" }, "locus": { "chromosome": "2", "start_pos": 7167013, "end_pos": 7158293, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051108.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051108.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050487.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050487.1" } ] } }, { "isoform_ac": "A0A5G2QV21-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21/entry", "sequence": { "sequence": "MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEEALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFMAD", "length": 157, "header": "tr|A0A5G2QV21-1|A0A5G2QV21_PIG Isoform 1 of ADP-ribosylation factor-like protein 2 OS=Sus scrofa OX=9823 GN=ARL2 PE=1 SV=1 CANONICAL=A0A5G2QV21-1" }, "locus": { "chromosome": "2", "start_pos": 7166932, "end_pos": 7158293, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070722.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070722.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067984.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067984.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515705", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515705", "resource": "KEGG Pathway" }, { "id": "R-SSC-83936", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-83936", "resource": "Reactome", "description": "Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "O08697-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "Arl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLLTILKKMKQKERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD", "length": 184 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q06849-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "Arl2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGFLTVLKKMRQKEREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKRIFTLD", "length": 184 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2TA37-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "ARL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFMAD", "length": 184 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54UF1-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "arl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGLLTVLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWVVKDIVSRCFVLD", "length": 184 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9D0J4-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "Arl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD", "length": 184 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ZPX1-1", "protein_name": "ADP-ribosylation factor-like protein 2", "gene_name": "ARL2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIYMLD", "length": 185 }, "evidence": [ { "id": "A0A5G2QV21", "url": "https://omabrowser.org/oma/group/A0A5G2QV21/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of glycolytic process", "id": "GO:0006110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006110", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "regulation of aerobic respiration", "id": "GO:1903715", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903715", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "positive regulation of microtubule polymerization", "id": "GO:0031116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031116", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" }, { "name": "maintenance of protein location in nucleus", "id": "GO:0051457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051457", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV21", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV21-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 157, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV21-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV21" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 30, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 30, "end_pos": 30, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV21" }, { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 47, "amino_acid": "Thr", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 47, "end_pos": 47, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 57, "amino_acid": "His", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 57, "end_pos": 57, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "PIRSR606689-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR606689-2" } ], "binding_site_uniprot": 74, "amino_acid": "Arg", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 74, "end_pos": 74, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSM5-1", "uniprot_ac": "A0A5G2QSM5", "uniprot_id": "A0A5G2QSM5_PIG", "mass": { "chemical_mass": 44925.0, "monoisotopic_mass": 44925.0 }, "refseq": {}, "gene_names": [ { "name": "UBAC1", "type": "recommended", "evidence": [ { "id": "A0A5G2QSM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ] } ], "protein_names": [ { "name": "Ubiquitin-associated domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A5G2QSM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5/entry#names_and_taxonomy" } ] }, { "name": "Kip1 ubiquitination-promoting complex protein 2", "type": "synonym", "evidence": [ { "id": "A0A5G2QSM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBAC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QSM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033162", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033162", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14303", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14303", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052476", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052476", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46738:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46738:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZMV3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAPGSSEDPKSVSHHKLIHAASERVLSDARTILEESVQDEDVLLLIRKRAPSPLPKMAEVSAEEKKKQEQKAPDRDAIFRATANLPSRDMDRAAVQTSPRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPESRAVKALRLNHMSVPQAMEWLIEHAEDPTIDTPLPGPAAGRAAAAGPSAGPSAEEGDEEARDELTEIFKKIRRKREFRADARAVVSLMEMGFDEKEVMDALRVNNNQQNAACEWLLGDRKPSPEELDQGIDPESPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRVFQTLNRS", "length": 402, "header": "tr|A0A5G2QSM5-1|A0A5G2QSM5_PIG Isoform 1 of Ubiquitin-associated domain-containing protein 1 OS=Sus scrofa OX=9823 GN=UBAC1 PE=4 SV=1 CANONICAL=A0A5G2QSM5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMV3/entry", "sequence": { "sequence": "MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAPGSSEDPKSVSHHKLIHAASERVLSDARTILEESVQDEDVLLLIRKRAPSPLPKMAEVSAEEKKKQEQKAPDRDAIFRATANLPSRDMDRAAVQTSPRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPESRAVKALRLNHMSVPQAMEWLIEHGDEEARDELTEIFKKIRRKREFRADARAVVSLMEMGFDEKEVMDALRVNNNQQNAACEWLLGDRKPSPEELDQGIDPESPLFQAILDNPVVQLGLTNPKTLLGVCLLSAGSGGPGSHRTDGPADIAVTTPGSSCHECRVGPGDWALLAVGQPPMRWLCSSFDKPVKVDDPGRQCRQQRRVGPSLRACWLTGSYSCEAFPWHFFRL", "length": 436, "header": "tr|A0A286ZMV3-1|A0A286ZMV3_PIG Computationally mapped isoform of UBA domain containing 1 OS=Sus scrofa OX=9823 GN=UBAC1 PE=4 SV=2 CANONICAL=A0A5G2QSM5-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1671781, "end_pos": 1657370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065487.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065487.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032785.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032785.2" } ] } }, { "isoform_ac": "A0A5G2QSM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5/entry", "sequence": { "sequence": "MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAPGSSEDPKSVSHHKLIHAASERVLSDARTILEESVQDEDVLLLIRKRAPSPLPKMAEVSAEEKKKQEQKAPDRDAIFRATANLPSRDMDRAAVQTSPRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPESRAVKALRLNHMSVPQAMEWLIEHAEDPTIDTPLPGPAAGRAAAAGPSAGPSAEEGDEEARDELTEIFKKIRRKREFRADARAVVSLMEMGFDEKEVMDALRVNNNQQNAACEWLLGDRKPSPEELDQGIDPESPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRVFQTLNRS", "length": 402, "header": "tr|A0A5G2QSM5-1|A0A5G2QSM5_PIG Isoform 1 of Ubiquitin-associated domain-containing protein 1 OS=Sus scrofa OX=9823 GN=UBAC1 PE=4 SV=1 CANONICAL=A0A5G2QSM5-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1674716, "end_pos": 1657370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066553.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066553.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067131.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067131.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" }, { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "polyubiquitin modification-dependent protein binding", "id": "GO:0031593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031593", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" }, { "name": "proteasome binding", "id": "GO:0070628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070628", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSM5" }, { "id": "PS50030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBA", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 231, "start_aa": "Asp", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 375, "end_pos": 377 }, { "start_pos": 400, "end_pos": 402 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QV88-1", "uniprot_ac": "A0A5G2QV88", "uniprot_id": "A0A5G2QV88_PIG", "mass": { "chemical_mass": 33855.0, "monoisotopic_mass": 33855.0 }, "refseq": {}, "gene_names": [ { "name": "VSIG4", "type": "recommended", "evidence": [ { "id": "A0A5G2QV88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ] } ], "protein_names": [ { "name": "V-set and immunoglobulin domain containing 4", "type": "synonym", "evidence": [ { "id": "A0A5G2QV88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VSIG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88", "locus": { "chromosome": "X", "start_pos": 52175607, "end_pos": 52198566, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035170", "url": "https://www.ensembl.org/id/ENSSSCG00000035170" } ] } } ], "crossref": [ { "id": "A0A5G2QV88", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV88", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035170", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035170", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16082", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16082", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16089", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16089", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15466", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15466", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15466:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15466:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AEY7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV88-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLLLGLRLLSHLLVVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKHSSNPLEAKTKTPPTMQSPLEATSTVNSSWVWTTEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC", "length": 305, "header": "tr|A0A5G2QV88-1|A0A5G2QV88_PIG Isoform 1 of V-set and immunoglobulin domain containing 4 OS=Sus scrofa OX=9823 GN=VSIG4 PE=4 SV=1 CANONICAL=A0A5G2QV88-1" }, "isoforms": [ { "isoform_ac": "A0A287AEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY7/entry", "sequence": { "sequence": "MGLLLGLRLLSHLLVVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAQGSPPISYAWYKKQTKNEAPIKIGALGTLLFKPAVVTDSGSYFCTAKGRVGSEQHSDTVKFVVKDSSNPLEAKTKTPPTMQSPLEATSTVNSSWVWTTEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC", "length": 399, "header": "tr|A0A287AEY7-1|A0A287AEY7_PIG Computationally mapped isoform of V-set and immunoglobulin domain containing 4 OS=Sus scrofa OX=9823 GN=VSIG4 PE=4 SV=1 CANONICAL=A0A5G2QV88-1" }, "locus": { "chromosome": "X", "start_pos": 52198496, "end_pos": 52176785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037775.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037775.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042591.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042591.1" } ] } }, { "isoform_ac": "A0A5G2QV88-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88/entry", "sequence": { "sequence": "MGLLLGLRLLSHLLVVTYGHPILEVPKSVTGPWKGDVNIPCTYGPLQGYTQVLVKWLVQHGSDPVTVFLRDSSGDHIQQAKYRGRLHVNHEVPGDVSLQLNTLEMDDQSHYTCEVTWQTPDGNQVVRDKIIELHVQKHSSNPLEAKTKTPPTMQSPLEATSTVNSSWVWTTEMDGYIEKTSTGPGKGLPIFAIILIISLCCIMVITLTYIMLCRKTSQQEHVYEVARVHAREASDSGESMRVAIFASGCSSEDPPSQTLGNDYSDEPCLGQEYQIIAQVNGDYTRLLHTVPRNYEHPTTKGKGVC", "length": 305, "header": "tr|A0A5G2QV88-1|A0A5G2QV88_PIG Isoform 1 of V-set and immunoglobulin domain containing 4 OS=Sus scrofa OX=9823 GN=VSIG4 PE=4 SV=1 CANONICAL=A0A5G2QV88-1" }, "locus": { "chromosome": "X", "start_pos": 52198496, "end_pos": 52176785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078955.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078955.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068045.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068045.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of interleukin-2 production", "id": "GO:0032703", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032703", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" }, { "name": "negative regulation of T cell proliferation", "id": "GO:0042130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042130", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" }, { "name": "negative regulation of macrophage activation", "id": "GO:0043031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043031", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" }, { "name": "negative regulation of complement activation, alternative pathway", "id": "GO:0045957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045957", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "complement component C3b binding", "id": "GO:0001851", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001851", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV88", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QV88-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QV88-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QV88" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QV88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" }, { "id": "SM00409", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00409" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 136, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QV88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV88" }, { "id": "SM00406", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin V-set", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 115, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QT16-1", "uniprot_ac": "A0A5G2QT16", "uniprot_id": "A0A5G2QT16_PIG", "mass": { "chemical_mass": 57260.0, "monoisotopic_mass": 57260.0 }, "refseq": {}, "gene_names": [ { "name": "NELFA", "type": "recommended", "evidence": [ { "id": "A0A5G2QT16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ] } ], "protein_names": [ { "name": "Negative elongation factor complex member A", "type": "synonym", "evidence": [ { "id": "A0A5G2QT16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NELFA", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16", "locus": { "chromosome": "8", "start_pos": 1018453, "end_pos": 1039134, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008681", "url": "https://www.ensembl.org/id/ENSSSCG00000008681" } ] } } ], "crossref": [ { "id": "A0A5G2QT16", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008681", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008681", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR037517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13328", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13328", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13328:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13328:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23553", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23553", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112382", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-113418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6796648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BTA1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REL7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILGELREKVNECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGNRTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRKTLDAEAVEKPAKEETVVENATPDYAAGLVSTQKLGSLSSEPALPSTSYLPATPSAVPASSYIPSSETPPAPSSREASLQASRPPEEPSAPSPALPAQFKQRAPMYNSGPSPAPAPPAPSSPLTPTTPPAVAPAAQTPPVAMVAPQAQPPAQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMANAS", "length": 531, "header": "tr|A0A5G2QT16-1|A0A5G2QT16_PIG Isoform 1 of Negative elongation factor complex member A OS=Sus scrofa OX=9823 GN=NELFA PE=1 SV=1 CANONICAL=A0A5G2QT16-1" }, "isoforms": [ { "isoform_ac": "A0A287BTA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA1/entry", "sequence": { "sequence": "MPARRRPFPPKMASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILGELREKVNECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGNRTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRKTLDAEAVEKPAKEETVVENATPDYAAGLVSTQKLGSLSSEPALPSTSYLPATPSAVPASSYIPSSETPPAPSSREASLQASRPPEEPSAPSPALPAQFKQRAPMYNSGPSPAPAPPAPSSPLTPTTPPAVAPAAQTPPVAMVAPQAQPPAQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMANAS", "length": 542, "header": "tr|A0A287BTA1-1|A0A287BTA1_PIG Computationally mapped isoform of Negative elongation factor complex member A OS=Sus scrofa OX=9823 GN=NELFA PE=1 SV=2 CANONICAL=A0A5G2QT16-1" }, "locus": { "chromosome": "8", "start_pos": 1039031, "end_pos": 1018913, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056909.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056909.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059421.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059421.2" } ] } }, { "isoform_ac": "A0A5G2QT16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16/entry", "sequence": { "sequence": "MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILGELREKVNECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGNRTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRKTLDAEAVEKPAKEETVVENATPDYAAGLVSTQKLGSLSSEPALPSTSYLPATPSAVPASSYIPSSETPPAPSSREASLQASRPPEEPSAPSPALPAQFKQRAPMYNSGPSPAPAPPAPSSPLTPTTPPAVAPAAQTPPVAMVAPQAQPPAQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMANAS", "length": 531, "header": "tr|A0A5G2QT16-1|A0A5G2QT16_PIG Isoform 1 of Negative elongation factor complex member A OS=Sus scrofa OX=9823 GN=NELFA PE=1 SV=1 CANONICAL=A0A5G2QT16-1" }, "locus": { "chromosome": "8", "start_pos": 1038993, "end_pos": 1018913, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091592.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091592.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065132.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065132.1" } ] } }, { "isoform_ac": "A0A5G2REL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REL7/entry", "sequence": { "sequence": "MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILGELREKVNECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGNRTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRKTLDAEAVEKPAKEETVVENATPDYAAGLVSTQKLGSLSSEPALPSTSYLPATPSAVPASSYIPSSETPPAVAPAAQTPPVAMVAPQAQPPAQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMANAS", "length": 472, "header": "tr|A0A5G2REL7-1|A0A5G2REL7_PIG Computationally mapped isoform of Negative elongation factor complex member A OS=Sus scrofa OX=9823 GN=NELFA PE=1 SV=1 CANONICAL=A0A5G2QT16-1" }, "locus": { "chromosome": "8", "start_pos": 1038993, "end_pos": 1018913, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068853.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068853.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073091.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073091.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 328, "start_aa": "Thr", "end_pos": 328, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr328", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-112382", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "resource": "Reactome", "description": "Formation of RNA Pol II elongation complex" }, { "id": "R-SSC-113418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-113418", "resource": "Reactome", "description": "Formation of the Early Elongation Complex" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-6796648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "resource": "Reactome", "description": "TP53 Regulates Transcription of DNA Repair Genes" }, { "id": "R-SSC-75955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "resource": "Reactome", "description": "RNA Polymerase II Transcription Elongation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" }, { "name": "RNA polymerase inhibitor activity", "id": "GO:0140870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140870", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" }, { "name": "NELF complex", "id": "GO:0032021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032021", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription elongation by RNA polymerase II", "id": "GO:0034244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034244", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" }, { "name": "transcription pausing by RNA polymerase II", "id": "GO:0160239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160239", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QT16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QT16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QT16" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QT16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT16" }, { "id": "PS51838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HDAg", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 248, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 328 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 237, "end_pos": 239 }, { "start_pos": 295, "end_pos": 297 }, { "start_pos": 433, "end_pos": 435 }, { "start_pos": 529, "end_pos": 531 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QRK9-1", "uniprot_ac": "A0A5G2QRK9", "uniprot_id": "A0A5G2QRK9_PIG", "mass": { "chemical_mass": 41034.0, "monoisotopic_mass": 41034.0 }, "refseq": {}, "gene_names": [ { "name": "FBXO3", "type": "recommended", "evidence": [ { "id": "A0A5G2QRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ] } ], "protein_names": [ { "name": "F-box only protein 3", "type": "recommended", "evidence": [ { "id": "A0A5G2QRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex, SCF(FBXO3), which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation. The SCF(FBXO3) also acts as a regulator of inflammation by mediating ubiquitination and degradation of FBXL2 in response to lipopolysaccharide (LPS). The SCF(FBXO3) complex specifically recognizes FBXL2 phosphorylated at 'Thr-404' and promotes its ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "A0A480F3U9", "url": "https://www.uniprot.org/uniprotkb/A0A480F3U9#function" }, { "database": "UniProtKB", "id": "ARBA00057907", "url": "https://www.uniprot.org/uniprotkb/ARBA00057907#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9", "locus": { "chromosome": "2", "start_pos": 27184181, "end_pos": 27146444, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013308", "url": "https://www.ensembl.org/id/ENSSSCG00000013308" } ] } } ], "crossref": [ { "id": "A0A5G2QRK9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRK9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013308", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013308", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22084", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22084", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737203", "url": "https://www.ncbi.nlm.nih.gov/gene/100737203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007474", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007474", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480F3U9", "url": "https://www.orthodb.org/?gene=A0A480F3U9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46550", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46550", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46550:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46550:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09346", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09346", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480F3U9", "url": "https://www.uniprot.org/uniprotkb/A0A480F3U9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480F3U9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480F3U9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0V8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYVHDPDCVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEDDEDDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "length": 358, "header": "tr|A0A5G2QRK9-1|A0A5G2QRK9_PIG Isoform 1 of F-box only protein 3 OS=Sus scrofa OX=9823 GN=FBXO3 PE=4 SV=1 CANONICAL=A0A5G2QRK9-1" }, "isoforms": [ { "isoform_ac": "A0A480F3U9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480F3U9/entry", "sequence": { "sequence": "MAAMETESAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYVHDPDCVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEDDEDDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "length": 471, "header": "tr|A0A480F3U9-1|A0A480F3U9_PIG Computationally mapped isoform of F-box only protein 3 OS=Sus scrofa OX=9823 GN=FBXO3 PE=4 SV=1 CANONICAL=A0A5G2QRK9-1" }, "locus": { "chromosome": "2", "start_pos": 27182490, "end_pos": 27146456, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014534.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014534.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014140.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014140.4" } ] } }, { "isoform_ac": "A0A5G2QM08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM08/entry", "sequence": { "sequence": "MGPAEWGAKVGRWDAREKPGDPLTPSCCYVSRRLSQLSSHDPLWRRHCKKYWLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYVHDPDCVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEDDEDDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "length": 462, "header": "tr|A0A5G2QM08-1|A0A5G2QRK9_PIG Computationally mapped isoform of F-box only protein 3 OS=Sus scrofa OX=9823 GN=FBXO3 PE=4 SV=1 CANONICAL=A0A5G2QRK9-1" }, "locus": { "chromosome": "2", "start_pos": 27182490, "end_pos": 27146984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087798.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087798.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063126.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063126.1" } ] } }, { "isoform_ac": "A0A5G2QRK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9/entry", "sequence": { "sequence": "MVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYVHDPDCVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEDDEDDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "length": 358, "header": "tr|A0A5G2QRK9-1|A0A5G2QRK9_PIG Isoform 1 of F-box only protein 3 OS=Sus scrofa OX=9823 GN=FBXO3 PE=4 SV=1 CANONICAL=A0A5G2QRK9-1" }, "locus": { "chromosome": "2", "start_pos": 27182490, "end_pos": 27153720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088366.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088366.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066702.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066702.1" } ] } }, { "isoform_ac": "A0A5G2R0V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V8/entry", "sequence": { "sequence": "MYPDQMDLFIGATFTDWFTSYVNNVVSGGFPIIRDQIFRYVHDPDCVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEDDEDDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF", "length": 240, "header": "tr|A0A5G2R0V8-1|A0A5G2R0V8_PIG Computationally mapped isoform of F-box only protein 3 OS=Sus scrofa OX=9823 GN=FBXO3 PE=4 SV=2 CANONICAL=A0A5G2QRK9-1" }, "locus": { "chromosome": "2", "start_pos": 27182490, "end_pos": 27171437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073804.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073804.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067846.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067846.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737203", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "response to lipopolysaccharide", "id": "GO:0032496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032496", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QRK9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 358, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QRK9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QRK9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRK9" }, { "id": "PS51087", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51087" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ApaG", "eco_id": "ECO_0000259", "start_pos": 165, "end_pos": 295, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QXF2-1", "uniprot_ac": "A0A5G2QXF2", "uniprot_id": "A0A5G2QXF2_PIG", "mass": { "chemical_mass": 45736.0, "monoisotopic_mass": 45736.0 }, "refseq": {}, "gene_names": [ { "name": "MFSD8", "type": "recommended", "evidence": [ { "id": "A0A5G2QXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ] } ], "protein_names": [ { "name": "Major facilitator superfamily domain containing 8", "type": "synonym", "evidence": [ { "id": "A0A5G2QXF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFSD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2", "locus": { "chromosome": "8", "start_pos": 96972383, "end_pos": 96925081, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009075", "url": "https://www.ensembl.org/id/ENSSSCG00000009075" } ] } } ], "crossref": [ { "id": "A0A5G2QXF2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXF2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009075", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009075", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17326", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17326", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23510", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23510", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23510:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23510:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMK2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEC3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRA9", "url": "https://www.uniprot.org/uniprotkb/F1RRA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRA9-1", "url": "https://www.uniprot.org/uniprotkb/F1RRA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 412, "header": "tr|A0A5G2QXF2-1|A0A5G2QXF2_PIG Isoform 1 of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG2/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVFQTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFLGILNIILILTILREHRVDDSGRQCKNINFEEVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKNLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 483, "header": "tr|A0A5G2QPG2-1|A0A5G2QXF2_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072918.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072918.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060177.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060177.1" } ] } }, { "isoform_ac": "A0A5G2QX70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX70/entry", "sequence": { "sequence": "MFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPEHRVDDSGRQCKNINFEEVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 423, "header": "tr|A0A5G2QX70-1|A0A5G2QX70_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96934334, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079972.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079972.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068745.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068745.1" } ] } }, { "isoform_ac": "A0A5G2QXF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 412, "header": "tr|A0A5G2QXF2-1|A0A5G2QXF2_PIG Isoform 1 of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074096.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074096.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068825.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068825.1" } ] } }, { "isoform_ac": "A0A5G2RDG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDG9/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 450, "header": "tr|A0A5G2RDG9-1|A0A5G2RDG9_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068754.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068754.1" } ] } }, { "isoform_ac": "A0A5G2RMK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMK2/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPGCVHGLVNSIWKCSTDSWTCVHQPSVYCLGPTMGFQPCVWASVAYHHTPGCGLQKTHCFLCEAWRNSGVT", "length": 254, "header": "tr|A0A5G2RMK2-1|A0A5G2RMK2_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970453, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081270.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081270.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073839.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073839.1" } ] } }, { "isoform_ac": "A0A8W4FEC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEC3/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAVFQTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFLGILNIILILTILREHRVDDSGRQCKNINFEEVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 479, "header": "tr|A0A8W4FEC3-1|A0A8W4FEC3_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=1 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103028.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103028.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077659.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077659.1" } ] } }, { "isoform_ac": "F1RRA9-1", "url": "https://www.uniprot.org/uniprotkb/F1RRA9/entry", "sequence": { "sequence": "MASFGVGAEQEPLLGDHTPGSRGDIIETEEHYKSRWRSIRILYFTMFLSSVGFSIVIMSIWPYLQKIDQTADASFLGWVIATFSLGQMAASPLFGLWSNYRPRKEPLIVSIFISVAANCLYAYVHLPPSHNKYYMLVARGLVGFGAGNVAVIRSYIAGATSLQERTSAMANTSACQALGFILGPVFQTCFALIGEKGVTWDTIKLQINMYTAPVLLSVFLGILNIILILTILREHRVDDSGRQCKNINFEEVSTDEVQVPQGNIDQVAVVATNVLFFVVLFIFALFETIVTPLTMDMYAWTREQAVLYDGIILAALGVEAVIIFMGIKLVSKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIITLWKSPREDHNEGPTGCPFEQAWCLYTPMIHLAQFLIAAVLVGIGYPSCNVMSYTLYSKILGPKPQGVYMGWLTASGSAARILGPVFISQVYTAWGPRWAFSLVCGLVLLTITLLGVVYKRLIAFSVRHGGIQE", "length": 517, "header": "tr|F1RRA9-1|F1RRA9_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 8 OS=Sus scrofa OX=9823 GN=MFSD8 PE=4 SV=4 CANONICAL=A0A5G2QXF2-1" }, "locus": { "chromosome": "8", "start_pos": 96970448, "end_pos": 96925183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009941.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009941.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009685.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009685.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 293, "start_aa": "Thr", "end_pos": 293, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr293", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "chloride channel activity", "id": "GO:0005254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005254", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "iodide transmembrane transporter activity", "id": "GO:0015111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015111", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "fluoride channel activity", "id": "GO:0062054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062054", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "autophagosome maturation", "id": "GO:0097352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097352", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" }, { "name": "lysosome organization", "id": "GO:0007040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007040", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXF2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QXF2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 412, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QXF2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QXF2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 293 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 }, { "start_pos": 270, "end_pos": 272 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QR33-1", "uniprot_ac": "A0A5G2QR33", "uniprot_id": "A0A5G2QR33_PIG", "mass": { "chemical_mass": 23042.0, "monoisotopic_mass": 23042.0 }, "refseq": { "ac": "XP_005662543", "name": "factor in the germline alpha isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662543" }, "gene_names": [ { "name": "FIGLA", "type": "recommended", "evidence": [ { "id": "A0A5G2QR33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ] }, { "name": "FIGLA", "type": "synonym", "evidence": [ { "id": "XP_005662543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662543" } ] } ], "protein_names": [ { "name": "Factor in the germline alpha", "type": "recommended", "evidence": [ { "id": "A0A5G2QR33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33/entry#names_and_taxonomy" } ] }, { "name": "Transcription factor FIGa", "type": "synonym", "evidence": [ { "id": "A0A5G2QR33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33/entry#names_and_taxonomy" } ] }, { "name": "factor in the germline alpha isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005662543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662543" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FIGLA", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33", "locus": { "chromosome": "3", "start_pos": 71723699, "end_pos": 71709681, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008321", "url": "https://www.ensembl.org/id/ENSSSCG00000008321" } ] } } ], "crossref": [ { "id": "A0A5G2QR33", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR33", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008321", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008321", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11422", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11422", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100313961", "url": "https://www.ncbi.nlm.nih.gov/gene/100313961", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100313961", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100313961", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662543", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662543", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDASPALLGTPPAEVLEEALREQFGPLPHLAAICRLKRLPSGGYSSIEDLQLVLERRRVANAKERERIKNLNRGFAKLKALVPFLPQSRKPSKVDILKGAAEYIQILSDVLEAAQDSEKQDPGRQSYGNNTFEPHIPLARELSRNIIQHAGCPMSLKNEEEGSWADGGSGESAHTCHQRAKSTKGVISPTRSLDKFPEVKLHHRFPQV", "length": 208, "header": "tr|A0A5G2QR33-1|A0A5G2QR33_PIG Isoform 1 of Factor in the germline alpha OS=Sus scrofa OX=9823 GN=FIGLA PE=4 SV=1 CANONICAL=A0A5G2QR33-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33/entry", "sequence": { "sequence": "MDASPALLGTPPAEVLEEALREQFGPLPHLAAICRLKRLPSGGYSSIEDLQLVLERRRVANAKERERIKNLNRGFAKLKALVPFLPQSRKPSKVDILKGAAEYIQILSDVLEAAQDSEKQDPGRQSYGNNTFEPHIPLARELSRNIIQHAGCPMSLKNEEEGSWADGGSGESAHTCHQRAKSTKGVISPTRSLDKFPEVKLHHRFPQV", "length": 208, "header": "tr|A0A5G2QR33-1|A0A5G2QR33_PIG Isoform 1 of Factor in the germline alpha OS=Sus scrofa OX=9823 GN=FIGLA PE=4 SV=1 CANONICAL=A0A5G2QR33-1" }, "locus": { "chromosome": "3", "start_pos": 71723696, "end_pos": 71709702, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089976.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089976.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067204.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100313961", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100313961", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "pmid": "" }, { "name": "oogenesis", "id": "GO:0048477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QR33-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 208, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QR33-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QR33" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QR33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR33" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 107, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QS57-1", "uniprot_ac": "A0A5G2QS57", "uniprot_id": "A0A5G2QS57_PIG", "mass": { "chemical_mass": 69596.0, "monoisotopic_mass": 69596.0 }, "refseq": {}, "gene_names": [ { "name": "COL13A1", "type": "recommended", "evidence": [ { "id": "A0A5G2QS57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ] } ], "protein_names": [ { "name": "Collagen type XIII alpha 1 chain", "type": "synonym", "evidence": [ { "id": "A0A5G2QS57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL13A1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57", "locus": { "chromosome": "14", "start_pos": 72953095, "end_pos": 72787303, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010256", "url": "https://www.ensembl.org/id/ENSSSCG00000010256" } ] } } ], "crossref": [ { "id": "A0A5G2QS57", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010256", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010256", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A1X1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADR0", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFF8", "url": "https://www.uniprot.org/uniprotkb/A0A287BFF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUE9", "url": "https://www.uniprot.org/uniprotkb/F1SUE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUE9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHREHLSTSLAALRSNQIITLKLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGEKGEPGEKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 715, "header": "tr|A0A5G2QS57-1|A0A5G2QS57_PIG Isoform 1 of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "isoforms": [ { "isoform_ac": "A0A287A1X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1X1/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGAKGQPGEKGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGDPGATGKPGPPGLPGKRGQRGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 656, "header": "tr|A0A287A1X1-1|A0A287A1X1_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=3 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049125.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049125.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037928.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037928.3" } ] } }, { "isoform_ac": "A0A287ADR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADR0/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHREHLSTSLAALRSNQIITLKGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGEKGEPGEKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 693, "header": "tr|A0A287ADR0-1|A0A287ADR0_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=2 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045080.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045080.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042151.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042151.2" } ] } }, { "isoform_ac": "A0A287BFF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFF8/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHREHLSTSLAALRSNQIITLKGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 666, "header": "tr|A0A287BFF8-1|A0A287BFF8_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=2 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038336.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038336.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055268.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055268.2" } ] } }, { "isoform_ac": "A0A5G2QRL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL9/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGAKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGDPGATGKPGPPGLPGKRGQRGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPVQGCWNK", "length": 682, "header": "tr|A0A5G2QRL9-1|A0A5G2QRL9_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060907.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060907.2" } ] } }, { "isoform_ac": "A0A5G2QS57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHREHLSTSLAALRSNQIITLKLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGEKGEPGEKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 715, "header": "tr|A0A5G2QS57-1|A0A5G2QS57_PIG Isoform 1 of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086856.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086856.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066954.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066954.1" } ] } }, { "isoform_ac": "A0A5G2QT29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT29/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHREHLSTSLAALRSNQIITLKGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGEDGLPVQGCWNK", "length": 608, "header": "tr|A0A5G2QT29-1|A0A5G2QT29_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071348.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071348.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067301.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067301.1" } ] } }, { "isoform_ac": "A0A5G2QXG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG9/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGEKGEPGEKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 684, "header": "tr|A0A5G2QXG9-1|A0A5G2QXG9_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073294.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073294.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069620.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069620.1" } ] } }, { "isoform_ac": "A0A5G2RNE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNE8/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGPAGRPGLPGDKGAIGMPGRVGAKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGDPGATGKPGPPGLPGKRGQRGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPGEKGEPGEKGDPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 726, "header": "tr|A0A5G2RNE8-1|A0A5G2RNE8_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=1 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090330.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090330.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074365.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074365.1" } ] } }, { "isoform_ac": "F1SUE9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE9/entry", "sequence": { "sequence": "MVAERSRKATDSGARGPGELGAPGTVALAVAPVERCARLPSPGSCGLLALALCSLALSLLAHFRTAELQARVLRLEAERGEQQMEPAILGRVNQLLDEKWKLHSRKRREAPKTSPGCHCPPGPPGQPGTRGFPGFPGPIGLDGKPGRPGPKGEMGLAGSPGLGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKQGAKGASGVTVAGMKGEPGTPGAKGEKGAVGSPGLLGLLGQKGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGDAGADGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGELVDYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKPGPAGMKGEDGHTGSPGEKGEKGETGQPGPPVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK", "length": 643, "header": "tr|F1SUE9-1|F1SUE9_PIG Computationally mapped isoform of Collagen type XIII alpha 1 chain OS=Sus scrofa OX=9823 GN=COL13A1 PE=4 SV=5 CANONICAL=A0A5G2QS57-1" }, "locus": { "chromosome": "14", "start_pos": 72950782, "end_pos": 72787502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011226.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011226.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010934.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010934.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 347, "start_aa": "Thr", "end_pos": 347, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr347", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 628, "start_aa": "Thr", "end_pos": 628, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr628", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" }, { "name": "morphogenesis of a branching structure", "id": "GO:0001763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001763", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" }, { "name": "endochondral ossification", "id": "GO:0001958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001958", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QS57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QS57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 715, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QS57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QS57" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 347, 628 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 448, "end_pos": 450 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVQ9-1", "uniprot_ac": "A0A5G2QVQ9", "uniprot_id": "A0A5G2QVQ9_PIG", "mass": { "chemical_mass": 61890.0, "monoisotopic_mass": 61890.0 }, "refseq": {}, "gene_names": [ { "name": "SWAP70", "type": "recommended", "evidence": [ { "id": "A0A5G2QVQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ] } ], "protein_names": [ { "name": "Switch-associated protein 70", "type": "recommended", "evidence": [ { "id": "A0A5G2QVQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Phosphatidylinositol 3,4,5-trisphosphate-dependent guanine nucleotide exchange factor (GEF) which, independently of RAS, transduces signals from tyrosine kinase receptors to RAC. It also mediates signaling of membrane ruffling. Regulates the actin cytoskeleton as an effector or adapter protein in response to agonist stimulated phosphatidylinositol (3,4)-bisphosphate production and cell protrusion.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9#function" }, { "database": "UniProtKB", "id": "ARBA00059750", "url": "https://www.uniprot.org/uniprotkb/ARBA00059750#function" }, { "database": "UniProtKB", "id": "A0A5G2QQG7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG7#function" }, { "database": "UniProtKB", "id": "F1S6V0", "url": "https://www.uniprot.org/uniprotkb/F1S6V0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SWAP70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9", "locus": { "chromosome": "2", "start_pos": 49719669, "end_pos": 49805049, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013410", "url": "https://www.ensembl.org/id/ENSSSCG00000013410" } ] } } ], "crossref": [ { "id": "A0A5G2QVQ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVQ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521312", "url": "https://www.ncbi.nlm.nih.gov/gene/100521312", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521312", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521312", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VEFYKMC", "url": "https://omabrowser.org/oma/group/VEFYKMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QQG7", "url": "https://www.orthodb.org/?gene=A0A5G2QQG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14383", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14383", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14383:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14383:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQG7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6V0", "url": "https://www.uniprot.org/uniprotkb/F1S6V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6V0-1", "url": "https://www.uniprot.org/uniprotkb/F1S6V0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVLKDELLKAIWHAFTALDLDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDRDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIQSTIHLLKLGSPPPHKEARQRRKELRKKLLAEQEELERQMKELQVANENKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIRTTEAEKQELENQRVIKEQALQEAMEQLQQLELERKQALEQYEGVKKKLELATNKTKSWKDKVAQHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKGKKTTE", "length": 527, "header": "tr|A0A5G2QVQ9-1|A0A5G2QVQ9_PIG Isoform 1 of Switch-associated protein 70 OS=Sus scrofa OX=9823 GN=SWAP70 PE=1 SV=1 CANONICAL=A0A5G2QVQ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQG7/entry", "sequence": { "sequence": "MGVLKDELLKAIWHAFTALDLDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKVQDNFDKIEFNRMCWTLCVKKNLTKSPLLITEDDAFKIWVIFNFLSEDKYPLVIVPEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDRDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIQSTIHLLKLGSPPPHKEARQRRKELRKKLLAEQEELERQMKELQVANENKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIRTTEAEKQELENQRVIKEQALQEAMEQLQQLELERKQALEQYEGVKKKLELATNKTKSWKDKVAQHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKGKKTTE", "length": 585, "header": "tr|A0A5G2QQG7-1|A0A5G2QQG7_PIG Computationally mapped isoform of Switch-associated protein 70 OS=Sus scrofa OX=9823 GN=SWAP70 PE=1 SV=1 CANONICAL=A0A5G2QVQ9-1" }, "locus": { "chromosome": "2", "start_pos": 49804809, "end_pos": 49722195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068964.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068964.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060523.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060523.1" } ] } }, { "isoform_ac": "A0A5G2QVQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9/entry", "sequence": { "sequence": "MGVLKDELLKAIWHAFTALDLDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDRDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIQSTIHLLKLGSPPPHKEARQRRKELRKKLLAEQEELERQMKELQVANENKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIRTTEAEKQELENQRVIKEQALQEAMEQLQQLELERKQALEQYEGVKKKLELATNKTKSWKDKVAQHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKGKKTTE", "length": 527, "header": "tr|A0A5G2QVQ9-1|A0A5G2QVQ9_PIG Isoform 1 of Switch-associated protein 70 OS=Sus scrofa OX=9823 GN=SWAP70 PE=1 SV=1 CANONICAL=A0A5G2QVQ9-1" }, "locus": { "chromosome": "2", "start_pos": 49804809, "end_pos": 49722195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071742.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071742.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068230.1" } ] } }, { "isoform_ac": "F1S6V0-1", "url": "https://www.uniprot.org/uniprotkb/F1S6V0/entry", "sequence": { "sequence": "MGVLKDELLKAIWHAFTALDLDHSGKVSKSQLKVQDNFDKIEFNRMCWTLCVKKNLTKSPLLITEDDAFKIWVIFNFLSEDKYPLVIVPEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDRDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIQSTIHLLKLGSPPPHKEARQRRKELRKKLLAEQEELERQMKELQVANENKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIRTTEAEKQELENQRVIKEQALQEAMEQLQQLELERKQALEQYEGVKKKLELATNKTKSWKDKVAQHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKGKKTTE", "length": 538, "header": "tr|F1S6V0-1|F1S6V0_PIG Computationally mapped isoform of Switch-associated protein 70 OS=Sus scrofa OX=9823 GN=SWAP70 PE=1 SV=3 CANONICAL=A0A5G2QVQ9-1" }, "locus": { "chromosome": "2", "start_pos": 49804809, "end_pos": 49722195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014650.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014650.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014255.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014255.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521312", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521312", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZNS0-1", "protein_name": "Switch-associated protein 70", "gene_name": "SWAP70", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLWCLFLHASPGFQMRKSMHIKGSFYSNGSVCNHHCNCVKQSNPCGRFLLVKCWCFPFLEKNLRGRTDTDMKVLSHNLCTVLNVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKVQGNFDKVEFNRMCWTLCAKKNLSKSPLLISDEDAFKVWVIFNFLSEDKYPLIIVPEEIEYLLKKLTEAMGAGWQQEQFDLYKIALNTSREGLSAWELIDLIGSGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMLKKGHKRKNWTERWFVLKPNIISYYVSEDLKDKKGDIILDGNCCVEPLPDKDGKKCLFLIKCLDKSFEISASDKKKKQEWIQAIQTTVSLLRAGSPPPHKEARQKRKELRQKLLAEQEELERQMKELQTANENKQKELETVRKQLEAAAARAAEEEKKRLQTQVELQDRFSLELEREKMVRQKMEEQVAQKSSELEQYLQRVRELEEMYKQLQEALEVEKQARQDEETVRKLQARLLEEESAKRAELEKWHLQQQQTIQMTEAEKQELENQRMIKEQALQVAMQQLEQLELERKEALEQYEEVKKKLETAANNTRSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAFTEAELEQRQKSWKGKKASSE", "length": 626 }, "evidence": [ { "id": "A0A5G2QVQ9", "url": "https://omabrowser.org/oma/group/A0A5G2QVQ9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LRV2-1", "protein_name": "Switch-associated protein 70", "gene_name": "Swap70", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGLKDELLKAIWHAFTALDLDRSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKVQDNFDKIEFNRMCWTLCVKKNLTKSPLLITEDDAFKVWVIFNFLSEDKYPLIIVPEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDNKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHKRKNWTERWFVLKPNIISYYVSEDLKDKKGDIMLDENCCVESLPDKDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEARQRRKELRRKLLAEQEELERQMKELQAANENKQQELESVRKKLEEAASRAADEEKKRLQTQVELQTRFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLAQQQAIQTTEAEKQELEQQRVLKEQALQEAMAQLEQLELERKQALEQYEGVKRKLEMATNTTKSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKEKKTTD", "length": 585 }, "evidence": [ { "id": "A0A5G2QVQ9", "url": "https://omabrowser.org/oma/group/A0A5G2QVQ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LYE0-1", "protein_name": "Switch-associated protein 70", "gene_name": "swap70b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGLRDELLKAIWHAFTALDVDKSGKVSKSQLKVLSHNLCTVMKIPHDPVALEEHFRDDDEGPVSNQGYMPYLNRFILDKVQDNFDRIDFNRMCWTLCARKNLNRNHLLISDDDAFKIWCIFNFLSEDKYPLVMVSEEIEYFLRKLTEAMGGSWIEEKFEQYKLQLSSKHQCLKVWELIELVGMGHFSKGMDRQTLSMGITEVFHELILDVLKQGYMMKKGHKRKNWTERWFLLKPSLISYYVSEDLTEKKGDILLDGNCCVESLPDKEGKKCLFYVKCSDKSFEISASDKKKKQEWIQAIQTCITLLKVGRPAPHHEARQKRRELRQKQQAEQEELELRMRELQMANENKQRELEAMRKKLEEAAANAADEERRRLQTQNELQDLYRLEMEKEKMVRQQMEEQVAQKSNELEQYLQRVRELENMYHSLEEALEEERQARQDEETVRKLQARLLEEEVSKRAELEEIHLYQQQTISQTQAEKQELERERLAKESALESAMQQLHQLEADRQGALEQYQEVMKKLSDAANNTKSWKDKVAQHEGLIRLIQPGPKYPQKITNWGPAAFTDAELNLREKDWQEKKNRPATPQ", "length": 588 }, "evidence": [ { "id": "A0A5G2QVQ9", "url": "https://omabrowser.org/oma/group/A0A5G2QVQ9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6A028-1", "protein_name": "Switch-associated protein 70", "gene_name": "Swap70", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGLKDELLKAIWHAFTALDLDRSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNKFILEKVQDNFDKIEFNRMCWTLCVKKNLTKSPLLITEDDAFKVWVIFNFLSEDKYPLIIVPEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDNKDGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHKRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLIKCFDKTFEISASDKKKKQEWIQAIYSTIHLLKLGSPPPHKEARQRRKELRRKLLAEQEELERQMKELQAANENKQQELESVRKKLEEAASRAADEEKKRLQTQVELQTRFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEAEKQELEQQRVMKEQALQEAMAQLEQLELERKQALEQYEGVKKKLEMATHMTKSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAFTQAELEEREKSWKEKKTTE", "length": 585 }, "evidence": [ { "id": "A0A5G2QVQ9", "url": "https://omabrowser.org/oma/group/A0A5G2QVQ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UH65-1", "protein_name": "Switch-associated protein 70", "gene_name": "SWAP70", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSLKEELLKAIWHAFTALDQDHSGKVSKSQLKVLSHNLCTVLKVPHDPVALEEHFRDDDEGPVSNQGYMPYLNRFILEKVQDNFDKIEFNRMCWTLCVKKNLTKNPLLITEEDAFKIWVIFNFLSEDKYPLIIVSEEIEYLLKKLTEAMGGGWQQEQFEHYKINFDDSKNGLSAWELIELIGNGQFSKGMDRQTVSMAINEVFNELILDVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELEQYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQAIQTTEAEKQELENQRVLKEQALQEAMEQLEQLELERKQALEQYEEVKKKLEMATNKTKSWKDKVAHHEGLIRLIEPGSKNPHLITNWGPAAFTEAELEEREKNWKEKKTTE", "length": 585 }, "evidence": [ { "id": "A0A5G2QVQ9", "url": "https://omabrowser.org/oma/group/A0A5G2QVQ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of actin filament depolymerization", "id": "GO:0030835", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030835", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "positive regulation of actin filament bundle assembly", "id": "GO:0032233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032233", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "negative regulation of cell-cell adhesion mediated by integrin", "id": "GO:0033633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033633", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "positive regulation of cytosolic calcium ion concentration", "id": "GO:0007204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007204", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "regulation of protein localization", "id": "GO:0032880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032880", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "positive regulation of mast cell chemotaxis", "id": "GO:0060754", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060754", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVQ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 527, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVQ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVQ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVQ9" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 248, "start_aa": "Asp", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QVY5-1", "uniprot_ac": "A0A5G2QVY5", "uniprot_id": "A0A5G2QVY5_PIG", "mass": { "chemical_mass": 105667.0, "monoisotopic_mass": 105667.0 }, "refseq": {}, "gene_names": [ { "name": "SORCS1", "type": "recommended", "evidence": [ { "id": "A0A5G2QVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ] } ], "protein_names": [ { "name": "Sortilin related VPS10 domain containing receptor 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SORCS1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5", "locus": { "chromosome": "14", "start_pos": 117479787, "end_pos": 118009583, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030026", "url": "https://www.ensembl.org/id/ENSSSCG00000030026" } ] } } ], "crossref": [ { "id": "A0A5G2QVY5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVY5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030026", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030026", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000601", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000601", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AYSHEQK", "url": "https://omabrowser.org/oma/group/AYSHEQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12106:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12106:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8W0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL35", "url": "https://www.uniprot.org/uniprotkb/K7GL35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL35-1", "url": "https://www.uniprot.org/uniprotkb/K7GL35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNC0", "url": "https://www.uniprot.org/uniprotkb/K7GNC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNC0-1", "url": "https://www.uniprot.org/uniprotkb/K7GNC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNTFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEREMVSRVSHPESRPHIPQTELRRPGQLIDEKVESQLIGE", "length": 936, "header": "tr|A0A5G2QVY5-1|A0A5G2QVY5_PIG Isoform 1 of Sortilin related VPS10 domain containing receptor 1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=2 CANONICAL=A0A5G2QVY5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5/entry", "sequence": { "sequence": "IMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNTFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEREMVSRVSHPESRPHIPQTELRRPGQLIDEKVESQLIGE", "length": 936, "header": "tr|A0A5G2QVY5-1|A0A5G2QVY5_PIG Isoform 1 of Sortilin related VPS10 domain containing receptor 1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=2 CANONICAL=A0A5G2QVY5-1" }, "locus": { "chromosome": "14", "start_pos": 117670070, "end_pos": 117483160, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074824.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074824.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068310.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068310.2" } ] } }, { "isoform_ac": "A0A5G2REY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REY0/entry", "sequence": { "sequence": "MGKVGAGGCSPAGLSALLAGAGFLVLCAPGACGGDSCCPPLPPSSAPRWVPTPRGLPHQGPRGRAPATPLPLLGRPLFAVSPGDRVLSLERAPGTGASVAVAPRSGRRRRSGEAQEKADPEEGTNRSPRGVLRDRGQQESGTLERDPDKATRFRLEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNTFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRRVALPSPPSPSTQPGDSSLRLQRARHATPPASPKRGSAGTQFAI", "length": 1167, "header": "tr|A0A5G2REY0-1|A0A5G2REY0_PIG Computationally mapped isoform of VPS10 domain-containing receptor SorCS1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=1 CANONICAL=A0A5G2QVY5-1" }, "locus": { "chromosome": "14", "start_pos": 118009247, "end_pos": 117483032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076048.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076048.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069487.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069487.1" } ] } }, { "isoform_ac": "A0A8W4F8W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W0/entry", "sequence": { "sequence": "MSACLGVTMILHSLEPGTNERACTFSFLAVNKGIRSCPSILVPSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNTFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEDAHPVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRRVALPSPPSPSTQPGDSSLRLQRARHATPPASPKRGSAGTQFAI", "length": 1021, "header": "tr|A0A8W4F8W0-1|A0A8W4F8W0_PIG Computationally mapped isoform of VPS10 domain-containing receptor SorCS1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=1 CANONICAL=A0A5G2QVY5-1" }, "locus": { "chromosome": "14", "start_pos": 117814879, "end_pos": 117483032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103936.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103936.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075260.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075260.1" } ] } }, { "isoform_ac": "K7GL35-1", "url": "https://www.uniprot.org/uniprotkb/K7GL35/entry", "sequence": { "sequence": "IMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNTFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEREMVSRVSHPESRPHIPQTELRRPGQLIDEKVESQLIGIAPNILLRL", "length": 944, "header": "tr|K7GL35-1|K7GL35_PIG Computationally mapped isoform of Sortilin related VPS10 domain containing receptor 1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=3 CANONICAL=A0A5G2QVY5-1" }, "locus": { "chromosome": "14", "start_pos": 117670070, "end_pos": 117483223, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034800.4", "url": "https://www.ensembl.org/id/ENSSSCT00000034800.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028563.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028563.3" } ] } }, { "isoform_ac": "K7GNC0-1", "url": "https://www.uniprot.org/uniprotkb/K7GNC0/entry", "sequence": { "sequence": "MKSNLHLLPNLTPPSSETLGLPSLVQPGGLGPMPLTFLFPLSAQWLPCRVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSQYLTCRMQNCTEANRNKPFPGYIDPDSLIIHFPGLSQRRFPFPASAPKAAPFDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEDAHPVDFGDGIAVSYVNLSSTEDGIKHVYHNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGVPGQHILVAVLPGLPTAAELFVLPYQDPTGENKRSAEDLEQISELLIHKLNQNSVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRRVALPSPPSPSTQPGDSSLRLQRARHATPPASPKRGSAGTQFAI", "length": 1010, "header": "tr|K7GNC0-1|K7GNC0_PIG Computationally mapped isoform of VPS10 domain-containing receptor SorCS1 OS=Sus scrofa OX=9823 GN=SORCS1 PE=1 SV=4 CANONICAL=A0A5G2QVY5-1" }, "locus": { "chromosome": "14", "start_pos": 117813833, "end_pos": 117483032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032873.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032873.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029372.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029372.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AEA1-1", "protein_name": "VPS10 domain-containing receptor SorCS1", "gene_name": "Sorcs1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKVGAGDGSSAALSALLTGAGLLMLLAPGICSSLSCCPPQHPSSTPRWTLTPRGFSYPGPLGRAPATPPPLFMRPLFAVAPGDRALFLERAGGSRVSVATASRSGRRRRSGMDPEKTEPGEGTSRSRRDMLRDGGQQGPGTGARDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEAVVPNRFYWSVLGSNKEPDLVHLEARTVDGHSIYLTCRMQNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRNPFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDADLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSELSDSDISMFVSSDAGNTWRQIFEEEHSILYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGTYAGAMESEPCVCTEADFDCDYGYERHSSGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLAFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGIPSQHILVAVLPGLPTAAELFVLPYQDGARENKRSPEDLEQISEVLIHKLNQNLVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEQELINPVSHTESRPTAPHPDLRRPGQLVDEKVESHLLDQDKPHHLHRQSGDLLGHNLQSKENPQRLQETC", "length": 1210 }, "evidence": [ { "id": "A0A5G2QVY5", "url": "https://omabrowser.org/oma/group/A0A5G2QVY5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8WY21-1", "protein_name": "VPS10 domain-containing receptor SorCS1", "gene_name": "SORCS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKVGAGGGSQARLSALLAGAGLLILCAPGVCGGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQEPGTRERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVFVQLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKKRKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAELFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRRVALPSPPSPSTQPGDSSLRLQRARHATPPSTPKRGSAGAQYAI", "length": 1168 }, "evidence": [ { "id": "A0A5G2QVY5", "url": "https://omabrowser.org/oma/group/A0A5G2QVY5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "post-Golgi vesicle-mediated transport", "id": "GO:0006892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006892", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 523, "end_pos": 525, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 686, "end_pos": 688, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QVY5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 936, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QVY5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QVY5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QVY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVY5" }, { "id": "PS50093", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PKD", "eco_id": "ECO_0000259", "start_pos": 593, "end_pos": 637, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 523, "end_pos": 525 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 604, "end_pos": 606 }, { "start_pos": 665, "end_pos": 667 }, { "start_pos": 686, "end_pos": 688 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSE0-1", "uniprot_ac": "A0A5G2QSE0", "uniprot_id": "A0A5G2QSE0_PIG", "mass": { "chemical_mass": 28909.0, "monoisotopic_mass": 28909.0 }, "refseq": {}, "gene_names": [ { "name": "RCHY1", "type": "recommended", "evidence": [ { "id": "A0A5G2QSE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ] } ], "protein_names": [ { "name": "Ring finger and CHY zinc finger domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QSE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase that mediates ubiquitination of target proteins, including p53/TP53, TP73, HDAC1 and CDKN1B. Mediates ubiquitination and degradation of p53/TP53; preferentially acts on tetrameric p53/TP53. Catalyzes monoubiquitinates the translesion DNA polymerase POLH. Involved in the ribosome-associated quality control (RQC) pathway, which mediates the extraction of incompletely synthesized nascent chains from stalled ribosomes: RCHY1 acts downstream of NEMF and recognizes CAT tails associated with stalled nascent chains, leading to their ubiquitination and degradation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYC5#function" }, { "database": "UniProtKB", "id": "ARBA00053558", "url": "https://www.uniprot.org/uniprotkb/ARBA00053558#function" }, { "database": "UniProtKB", "id": "A0A4X1T345", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T345#function" }, { "database": "UniProtKB", "id": "A0A287BSK5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSK5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RCHY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0", "locus": { "chromosome": "8", "start_pos": 71162840, "end_pos": 71181919, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008969", "url": "https://www.ensembl.org/id/ENSSSCG00000008969" } ] } } ], "crossref": [ { "id": "A0A5G2QSE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008969", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008969", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16464", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16464", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037275", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037275", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039512", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039512", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KLYPCRL", "url": "https://omabrowser.org/oma/group/KLYPCRL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21319:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21319:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05495", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05495", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14599", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14599", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BSK5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T345", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T345-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T345-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV2", "url": "https://www.uniprot.org/uniprotkb/F1RYV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV2-1", "url": "https://www.uniprot.org/uniprotkb/F1RYV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASAREDGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEKIQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 252, "header": "tr|A0A5G2QSE0-1|A0A5G2QSE0_PIG Isoform 1 of Ring finger and CHY zinc finger domain containing 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=1 CANONICAL=A0A5G2QSE0-1" }, "isoforms": [ { "isoform_ac": "A0A287BSK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSK5/entry", "sequence": { "sequence": "MAASAREDGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEKIQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 261, "header": "tr|A0A287BSK5-1|A0A287BSK5_PIG Computationally mapped isoform of RING finger and CHY zinc finger domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=1 CANONICAL=A0A5G2QSE0-1" }, "locus": { "chromosome": "8", "start_pos": 71181809, "end_pos": 71165032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057539.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057539.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059111.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059111.1" } ] } }, { "isoform_ac": "A0A4X1T345-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T345/entry", "sequence": { "sequence": "MAASAREDGGRGQEHGRRGCEHYDRGCLLKAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 221, "header": "tr|A0A4X1T345-1|A0A4X1T345_PIG Computationally mapped isoform of RING finger and CHY zinc finger domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=1 CANONICAL=A0A5G2QSE0-1" }, "locus": { "chromosome": "8", "start_pos": 71181809, "end_pos": 71165032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077009.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077009.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072263.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072263.1" } ] } }, { "isoform_ac": "A0A5G2QSE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0/entry", "sequence": { "sequence": "MAASAREDGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEKIQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 252, "header": "tr|A0A5G2QSE0-1|A0A5G2QSE0_PIG Isoform 1 of Ring finger and CHY zinc finger domain containing 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=1 CANONICAL=A0A5G2QSE0-1" }, "locus": { "chromosome": "8", "start_pos": 71181809, "end_pos": 71165032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088737.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088737.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067040.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067040.1" } ] } }, { "isoform_ac": "A0A5G2QYC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYC5/entry", "sequence": { "sequence": "RTFLARRPHAPPFLLCCTLQAKLFLLGKSLGLHIGHFISGFFLFSLSLLEVDFGSLRPVLTFPWDHFQAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEKIQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 299, "header": "tr|A0A5G2QYC5-1|A0A5G2QYC5_PIG Computationally mapped isoform of RING finger and CHY zinc finger domain-containing protein 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=1 CANONICAL=A0A5G2QSE0-1" }, "locus": { "chromosome": "8", "start_pos": 71181577, "end_pos": 71165032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090062.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090062.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069883.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069883.1" } ] } }, { "isoform_ac": "F1RYV2-1", "url": "https://www.uniprot.org/uniprotkb/F1RYV2/entry", "sequence": { "sequence": "MAASAREDGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEKIQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYNTAQAGGCRISLDQQ", "length": 246, "header": "tr|F1RYV2-1|F1RYV2_PIG Computationally mapped isoform of Ring finger and CHY zinc finger domain containing 1 OS=Sus scrofa OX=9823 GN=RCHY1 PE=4 SV=3 CANONICAL=A0A5G2QSE0-1" }, "locus": { "chromosome": "8", "start_pos": 71181809, "end_pos": 71165032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009824.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009824.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009571.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009571.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-110320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110320", "resource": "Reactome", "description": "Translesion Synthesis by POLH" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "Q96PM5-1", "protein_name": "RING finger and CHY zinc finger domain-containing protein 1", "gene_name": "RCHY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLDQQ", "length": 261 }, "evidence": [ { "id": "A0A5G2QSE0", "url": "https://omabrowser.org/oma/group/A0A5G2QSE0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CR50-1", "protein_name": "RING finger and CHY zinc finger domain-containing protein 1", "gene_name": "Rchy1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATAREDGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGGRRVPVDQQ", "length": 261 }, "evidence": [ { "id": "A0A5G2QSE0", "url": "https://omabrowser.org/oma/group/A0A5G2QSE0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFB6-1", "protein_name": "E3 ubiquitin-protein ligase RZFP34", "gene_name": "RZPF34", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDMGFHENEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRHELPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICRTGGEENFFHCKRCRCCYSKIMEDKHQCVEGAMHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQRGSDSHSCSSGMPQVVGSTG", "length": 291 }, "evidence": [ { "id": "A0A5G2QSE0", "url": "https://omabrowser.org/oma/group/A0A5G2QSE0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "ubiquitin ligase complex", "id": "GO:0000151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000151", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" }, { "name": "p53 binding", "id": "GO:0002039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002039", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-110316", "name": "POLH binds monoUb:K164-PCNA at damaged TT-CPD-DNA template", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-110316", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110316" } ] }, { "id": "R-SSC-5655142", "name": "RCHY1 binds POLH", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5655142", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5655142" } ] }, { "id": "R-SSC-5655170", "name": "RCHY1 monoubiquitinates POLH", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5655170", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5655170" } ] }, { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] }, { "id": "R-SSC-9954727", "name": "RCHY1 binds alanine-tailed nascent peptide and Ub:UBE2D2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9954727", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954727" } ] }, { "id": "R-SSC-9954737", "name": "RCHY1 K48 polyubiquitinates alanine-tailed nascent peptide", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9954737", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954737" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 252, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSE0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QSE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" }, { "id": "PS51266", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51266" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CHY-type", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 80, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QSE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSE0" }, { "id": "PS51270", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51270" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CTCHY-type", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 144, "start_aa": "Phe", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 206, "end_pos": 208 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QSV7-1", "uniprot_ac": "A0A5G2QSV7", "uniprot_id": "A0A5G2QSV7_PIG", "mass": { "chemical_mass": 23057.0, "monoisotopic_mass": 23057.0 }, "refseq": {}, "gene_names": [ { "name": "NUDT16L1", "type": "recommended", "evidence": [ { "id": "A0A5G2QSV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ] } ], "protein_names": [ { "name": "Nudix hydrolase 16 like 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QSV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Key regulator of TP53BP1 required to stabilize TP53BP1 and regulate its recruitment to chromatin. In absence of DNA damage, interacts with the tandem Tudor-like domain of TP53BP1, masking the region that binds histone H4 dimethylated at 'Lys-20' (H4K20me2), thereby preventing TP53BP1 recruitment to chromatin and maintaining TP53BP1 localization to the nucleus. Following DNA damage, ATM-induced phosphorylation of TP53BP1 and subsequent recruitment of RIF1 leads to dissociate NUDT16L1/TIRR from TP53BP1, unmasking the tandem Tudor-like domain and allowing recruitment of TP53BP1 to DNA double strand breaks (DSBs). Binds U8 snoRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BGI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BGI5#function" }, { "database": "UniProtKB", "id": "ARBA00060150", "url": "https://www.uniprot.org/uniprotkb/ARBA00060150#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUDT16L1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7", "locus": { "chromosome": "3", "start_pos": 37684207, "end_pos": 37693652, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035999", "url": "https://www.ensembl.org/id/ENSSSCG00000035999" } ] } } ], "crossref": [ { "id": "A0A5G2QSV7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035999", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035999", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18869", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18869", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR015797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31699", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31699", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31699:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31699:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BGI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BGI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTVAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVGPPPGPRPPPRGLALAPRKAPMGAGTCACPTVHPEGPSWWLSQLPEQRFHQHSQVPAPLCPQGAQYDAGGKAG", "length": 212, "header": "tr|A0A5G2QSV7-1|A0A5G2QSV7_PIG Isoform 1 of Nudix hydrolase 16 like 1 OS=Sus scrofa OX=9823 GN=NUDT16L1 PE=4 SV=1 CANONICAL=A0A5G2QSV7-1" }, "isoforms": [ { "isoform_ac": "A0A287BGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGI5/entry", "sequence": { "sequence": "MLRSRSACLLRYRRCAKMSTVAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFISTAKYQLLFALKVLNMMPEEKLAEALAAATEKQKKALEKLLPSSS", "length": 228, "header": "tr|A0A287BGI5-1|A0A287BGI5_PIG Computationally mapped isoform of Tudor-interacting repair regulator protein OS=Sus scrofa OX=9823 GN=NUDT16L1 PE=3 SV=3 CANONICAL=A0A5G2QSV7-1" }, "locus": { "chromosome": "3", "start_pos": 37693453, "end_pos": 37690996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053588.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053588.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055163.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055163.3" } ] } }, { "isoform_ac": "A0A5G2QSV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7/entry", "sequence": { "sequence": "MSTVAVPELKQISRVEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVGPPPGPRPPPRGLALAPRKAPMGAGTCACPTVHPEGPSWWLSQLPEQRFHQHSQVPAPLCPQGAQYDAGGKAG", "length": 212, "header": "tr|A0A5G2QSV7-1|A0A5G2QSV7_PIG Isoform 1 of Nudix hydrolase 16 like 1 OS=Sus scrofa OX=9823 GN=NUDT16L1 PE=4 SV=1 CANONICAL=A0A5G2QSV7-1" }, "locus": { "chromosome": "3", "start_pos": 37692431, "end_pos": 37691063, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076850.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076850.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061249.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061249.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "snoRNA binding", "id": "GO:0030515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030515", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of double-strand break repair via nonhomologous end joining", "id": "GO:2001033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001033", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QSV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 212, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QSV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QSV7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QUH1-1", "uniprot_ac": "A0A5G2QUH1", "uniprot_id": "A0A5G2QUH1_PIG", "mass": { "chemical_mass": 16059.0, "monoisotopic_mass": 16059.0 }, "refseq": {}, "gene_names": [ { "name": "ELK3", "type": "recommended", "evidence": [ { "id": "A0A5G2QUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ] } ], "protein_names": [ { "name": "ETS transcription factor ELK3", "type": "synonym", "evidence": [ { "id": "A0A5G2QUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELK3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1", "locus": { "chromosome": "5", "start_pos": 87285238, "end_pos": 87354208, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023803", "url": "https://www.ensembl.org/id/ENSSSCG00000023803" } ] } } ], "crossref": [ { "id": "A0A5G2QUH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023803", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023803", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622445", "url": "https://www.ncbi.nlm.nih.gov/gene/100622445", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622445", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622445", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DSDCKMA", "url": "https://omabrowser.org/oma/group/DSDCKMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L8C1", "url": "https://www.orthodb.org/?gene=I3L8C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11849:SF172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11849:SF172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8C1", "url": "https://www.uniprot.org/uniprotkb/I3L8C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8C1-1", "url": "https://www.uniprot.org/uniprotkb/I3L8C1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESAITLWQFLLQLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKTPNGLLLTPSPLLSSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQKS", "length": 142, "header": "tr|A0A5G2QUH1-1|A0A5G2QUH1_PIG Isoform 1 of ETS transcription factor ELK3 OS=Sus scrofa OX=9823 GN=ELK3 PE=3 SV=1 CANONICAL=A0A5G2QUH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1/entry", "sequence": { "sequence": "MESAITLWQFLLQLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKTPNGLLLTPSPLLSSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQKS", "length": 142, "header": "tr|A0A5G2QUH1-1|A0A5G2QUH1_PIG Isoform 1 of ETS transcription factor ELK3 OS=Sus scrofa OX=9823 GN=ELK3 PE=3 SV=1 CANONICAL=A0A5G2QUH1-1" }, "locus": { "chromosome": "5", "start_pos": 87322906, "end_pos": 87287738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074740.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074740.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061811.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061811.1" } ] } }, { "isoform_ac": "I3L8C1-1", "url": "https://www.uniprot.org/uniprotkb/I3L8C1/entry", "sequence": { "sequence": "MESAITLWQFLLQLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRESLLLQDSECKAPPEGREAHRHGLSALKSAGRNEYLHSGLYSSFTINSLQSPPESFKAIKTEKLEEQPEDSPPVEEVRTVIRFVTNKTDRHVSRPVVSLPSTSEAFLASSVSKISSLMLPNAASISSASPSSSRSPSLSPNSPLPSEHRSLFLEAACHDSDSLEPLNLSSGSKTRSPSLPPKAKKPKGLEISAPPLVLSGTDIGSIALNSPALPSGSLTPAFFTAQTPNGLLLTPSPLLSSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQKS", "length": 401, "header": "tr|I3L8C1-1|I3L8C1_PIG Computationally mapped isoform of ETS transcription factor ELK3 OS=Sus scrofa OX=9823 GN=ELK3 PE=3 SV=1 CANONICAL=A0A5G2QUH1-1" }, "locus": { "chromosome": "5", "start_pos": 87322906, "end_pos": 87287738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027848.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027848.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020281.1", "url": "https://www.ensembl.org/id/ENSSSCP00000020281.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622445", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622445", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A9V6-1", "protein_name": "ETS transcription factor ELK3", "gene_name": "Elk3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGWLGMESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKNIIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDSDCKVSPEGREIHKHGLSSLKSASRNEYIHSGLYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDKHITRPVVSLPSTSEAAAAASAFLASSVSAKISSLMLPNAASVSSASPSSSRSPSLSPNSPLPSEHRSLFLEAACHDADSLEPLNLSSGSKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSPALPSGSLTPAFFSAQTPSGLLLTPSPLLPSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPMPLPSLDRAPSPVLLSSSSQKS", "length": 414 }, "evidence": [ { "id": "A0A5G2QUH1", "url": "https://omabrowser.org/oma/group/A0A5G2QUH1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P41970-1", "protein_name": "ETS domain-containing protein Elk-3", "gene_name": "ELK3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESAITLWQFLLQLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRESLLLQDSDCKASPEGREAHKHGLAALRSTSRNEYIHSGLYSSFTINSLQNPPDAFKAIKTEKLEEPPEDSPPVEEVRTVIRFVTNKTDKHVTRPVVSLPSTSEAAAASAFLASSVSAKISSLMLPNAASISSASPFSSRSPSLSPNSPLPSEHRSLFLEAACHDSDSLEPLNLSSGSKTKSPSLPPKAKKPKGLEISAPPLVLSGTDIGSIALNSPALPSGSLTPAFFTAQTPNGLLLTPSPLLSSIHFWSSLSPVAPLSPARLQGPSTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQKS", "length": 407 }, "evidence": [ { "id": "A0A5G2QUH1", "url": "https://omabrowser.org/oma/group/A0A5G2QUH1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P41971-1", "protein_name": "ETS domain-containing protein Elk-3", "gene_name": "Elk3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESAITLWQFLLHLLLDQKHEHLICWTSNDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALRYYYDKNIIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDGDCKVSPEGREVHRHGLSSLKSASRNEYLHSGLYSSFTINSLQNAPEAFKAIKTEKLEEPCDDSPPVEEVRTVIRFVTNKTDKHITRPVVSLPSTSETAAAAASAFLASSVSAKISSLMLPNAASISSASPSSSRSPSLSPDSPLPSEHRSLFLEAACHDSDSLEPLNLSSGSKTKSPSLPPKGKKPKGLEISAPQLLLSGTDIGSIALNSPALPSGSLTPAFFTAQTPSGLFLASSPLLPSIHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPLPSLDRAPSPVLLSPSSQKS", "length": 409 }, "evidence": [ { "id": "A0A5G2QUH1", "url": "https://omabrowser.org/oma/group/A0A5G2QUH1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "purine-rich negative regulatory element binding", "id": "GO:0032422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032422", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QUH1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 142, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QUH1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QUH1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QUH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH1" }, { "id": "PS50061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ETS", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 69, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R4C2-1", "uniprot_ac": "A0A5G2R4C2", "uniprot_id": "A0A5G2R4C2_PIG", "mass": { "chemical_mass": 34730.0, "monoisotopic_mass": 34730.0 }, "refseq": {}, "gene_names": [ { "name": "FST", "type": "recommended", "evidence": [ { "id": "A0A5G2R4C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ] } ], "protein_names": [ { "name": "Follistatin", "type": "recommended", "evidence": [ { "id": "A0A5G2R4C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2/entry#names_and_taxonomy" } ] }, { "name": "Activin-binding protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R4C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FST", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2", "locus": { "chromosome": "16", "start_pos": 32811421, "end_pos": 32805932, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016892", "url": "https://www.ensembl.org/id/ENSSSCG00000016892" } ] } } ], "crossref": [ { "id": "A0A5G2R4C2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4C2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016892", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016892", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10913", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10913", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10913:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10913:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09289", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09289", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2473224", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2473224", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLQ4", "url": "https://www.uniprot.org/uniprotkb/F1SLQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRPKHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGRLSTSWEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPTSSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPESKSEEPVCASDNATYASECAMKEAACSSGVLLEVKHSGSCN", "length": 316, "header": "tr|A0A5G2R4C2-1|A0A5G2R4C2_PIG Isoform 1 of Follistatin OS=Sus scrofa OX=9823 GN=FST PE=4 SV=1 CANONICAL=A0A5G2R4C2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2/entry", "sequence": { "sequence": "MVRPKHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGRLSTSWEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPTSSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPESKSEEPVCASDNATYASECAMKEAACSSGVLLEVKHSGSCN", "length": 316, "header": "tr|A0A5G2R4C2-1|A0A5G2R4C2_PIG Isoform 1 of Follistatin OS=Sus scrofa OX=9823 GN=FST PE=4 SV=1 CANONICAL=A0A5G2R4C2-1" }, "locus": { "chromosome": "16", "start_pos": 32810565, "end_pos": 32806346, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090759.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090759.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069040.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069040.1" } ] } }, { "isoform_ac": "F1SLQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLQ4/entry", "sequence": { "sequence": "MVRPKHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGRLSTSWEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPTSSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPESKSEEPVCASDNATYASECAMKEAACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW", "length": 343, "header": "tr|F1SLQ4-1|A0A5G2R4C2_PIG Computationally mapped isoform of Follistatin OS=Sus scrofa OX=9823 GN=FST PE=4 SV=4 CANONICAL=A0A5G2R4C2-1" }, "locus": { "chromosome": "16", "start_pos": 32811379, "end_pos": 32806346, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018397.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018397.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017901.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017901.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLQ4", "url": "https://www.uniprot.org/uniprotkb/F1SLQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2473224", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2473224", "resource": "Reactome", "description": "Antagonism of Activin by Follistatin" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "activin receptor antagonist activity", "id": "GO:0038102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038102", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "activin binding", "id": "GO:0048185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048185", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "negative regulation of activin receptor signaling pathway", "id": "GO:0032926", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032926", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "hematopoietic progenitor cell differentiation", "id": "GO:0002244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002244", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" }, { "name": "regulation of BMP signaling pathway", "id": "GO:0030510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030510", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4C2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R4C2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R4C2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4C2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R4C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 165, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R4C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4C2" }, { "id": "PS51364", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51364" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TB", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 65, "start_aa": "Gly", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 123, "end_pos": 125 }, { "start_pos": 287, "end_pos": 289 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S619-1", "uniprot_ac": "F1S619", "uniprot_id": "F1S619_PIG", "mass": { "chemical_mass": 105462.0, "monoisotopic_mass": 105462.0 }, "refseq": { "ac": "XP_005663634", "name": "putative RNA-binding protein 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663634" }, "gene_names": [ { "name": "RBM15", "type": "recommended", "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ] }, { "name": "RBM15", "type": "synonym", "evidence": [ { "id": "XP_005663634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663634" } ] } ], "protein_names": [ { "name": "RNA-binding protein 15", "type": "recommended", "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619/entry#names_and_taxonomy" } ] }, { "name": "One-twenty two protein 1", "type": "synonym", "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 15", "type": "synonym", "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619/entry#names_and_taxonomy" } ] }, { "name": "putative RNA-binding protein 15", "type": "synonym", "evidence": [ { "id": "XP_005663634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663634" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM15", "url": "https://www.uniprot.org/uniprotkb/F1S619", "locus": { "chromosome": "4", "start_pos": 109768311, "end_pos": 109786383, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006809", "url": "https://www.ensembl.org/id/ENSSSCG00000006809" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006809", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006809", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12553", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12553", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12555", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12555", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12557", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12557", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155227", "url": "https://www.ncbi.nlm.nih.gov/gene/100155227", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034470", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034470", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155227", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155227", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWPNPAI", "url": "https://omabrowser.org/oma/group/EWPNPAI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S619", "url": "https://www.orthodb.org/?gene=F1S619", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BND7", "url": "https://www.uniprot.org/uniprotkb/A0A287BND7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BND7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BND7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S619-1", "url": "https://www.uniprot.org/uniprotkb/F1S619-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S620", "url": "https://www.uniprot.org/uniprotkb/F1S620", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S620-1", "url": "https://www.uniprot.org/uniprotkb/F1S620-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTAGRDPLPRRSPRWRRAVPLCETSAGRRVNQLRGEDLRRPATMKGKERSPVKPKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGGEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDSYPPSASVVGSSVGGHRHPPGGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRTAATAVPAYEPLDSLDRRRDGWSLDRDRGERDLPSSRDQPRKRRLPEESGGRHLDRSPENDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPAAAASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGNSDSRSSSSSATSDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNNG", "length": 963, "header": "tr|F1S619-1|F1S619_PIG Isoform 1 of RNA-binding protein 15 OS=Sus scrofa OX=9823 GN=RBM15 PE=1 SV=4 CANONICAL=F1S619-1" }, "isoforms": [ { "isoform_ac": "A0A287BND7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BND7/entry", "sequence": { "sequence": "MKTAGRDPLPRRSPRWRRAVPLCETSAGRRVNQLRGEDLRRPATMKGKERSPVKPKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGGEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDSYPPSASVVGSSVGGHRHPPGGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRTAATAVPAYEPLDSLDRRRDGWSLDRDRGERDLPSSRDQPRKRRLPEESGGRHLDRSPENDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPAAAASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGNSDSRSSSSSATSDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRVSFLTLSLKKSSKLQNQNSEVRIWKTKSPQTI", "length": 988, "header": "tr|A0A287BND7-1|A0A287BND7_PIG Computationally mapped isoform of RNA-binding protein 15 OS=Sus scrofa OX=9823 GN=RBM15 PE=1 SV=2 CANONICAL=F1S619-1" }, "locus": { "chromosome": "4", "start_pos": 109786184, "end_pos": 109782936, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061298.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061298.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058130.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058130.2" } ] } }, { "isoform_ac": "F1S619-1", "url": "https://www.uniprot.org/uniprotkb/F1S619/entry", "sequence": { "sequence": "MKTAGRDPLPRRSPRWRRAVPLCETSAGRRVNQLRGEDLRRPATMKGKERSPVKPKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGGEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDSYPPSASVVGSSVGGHRHPPGGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRTAATAVPAYEPLDSLDRRRDGWSLDRDRGERDLPSSRDQPRKRRLPEESGGRHLDRSPENDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPAAAASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGNSDSRSSSSSATSDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNNG", "length": 963, "header": "tr|F1S619-1|F1S619_PIG Isoform 1 of RNA-binding protein 15 OS=Sus scrofa OX=9823 GN=RBM15 PE=1 SV=4 CANONICAL=F1S619-1" }, "locus": { "chromosome": "4", "start_pos": 109786184, "end_pos": 109779176, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007458.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007458.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007262.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007262.4" } ] } }, { "isoform_ac": "F1S620-1", "url": "https://www.uniprot.org/uniprotkb/F1S620/entry", "sequence": { "sequence": "MKTAGRDPLPRRSPRWRRAVPLCETSAGRRVNQLRGEDLRRPATMKGKERSPVKPKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGGEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDSYPPSASVVGSSVGGHRHPPGGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYERVRPAYSLEPRVGAGAGAAPFRDVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRTAATAVPAYEPLDSLDRRRDGWSLDRDRGERDLPSSRDQPRKRRLPEESGGRHLDRSPENDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTASTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPAAAASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGNSDSRSSSSSATSDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRVFGLEIGVSYENKKSGADPVNILVIVMCLKGENDFSKTGEQRMKMWNSKL", "length": 1006, "header": "tr|F1S620-1|F1S619_PIG Computationally mapped isoform of RNA-binding protein 15 OS=Sus scrofa OX=9823 GN=RBM15 PE=1 SV=3 CANONICAL=F1S619-1" }, "locus": { "chromosome": "4", "start_pos": 109786184, "end_pos": 109779153, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007457.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007457.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007261.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007261.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S620", "url": "https://www.uniprot.org/uniprotkb/F1S620" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155227", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155227", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2L987-1", "protein_name": "RNA-binding protein 15", "gene_name": "Rbm15", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRSAGREPLPRRSPRWRRASPLCETSAGWRVSQLRRDDLRRPSTMKGKERSPVKPKRSRGGEDSSSRGERSKKLGGSGGSNGSSSGKTDSGGSRRSLHLDKSSSRGGSREYDTGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGVEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDTYPPSSSVVGTSVGSHRHAPGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYDRVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDTFGHRAPDPLRSARDRTPPLLYRDRDRDLYTDSDWVPPPPPVRERSARAAASAVTAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQSDKRDRKNSASAERDRKHRTAAPTEGKNPLKKEERSDGNAPSASASSSKQKAPSQKQDGGTAPVAASSPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSATSDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNSG", "length": 960 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1ABA2-1", "protein_name": "RNA-binding protein 15", "gene_name": "RBM15", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKGKERSPAKAKRSRGGGGGEDSASSSSSARGERSSKKPSGSGGGGGSNGGKAAAAAASNDSNSGSSRRGPHPDKAARAGSREYESGAAAAATGGGGGRHSYGGKSAEPSRSSSSRGGESRAAVAAQSSSSSETGGGGEYKTLKISELGSALSDEAVEDGLFHEFKRFGDVSVKISRLPPGTGAADERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVGSGGGSSRRRSSRSPALLDKESPYGTAAVGLAAAAAAVRHPAAGATQRALSPAGSGGALGYRDYRLQQLALGRLPPPPPLPRELERERDYGGFYEARVRPAYGLERVASVAAAGGFRGGGGGAGAAGEEEISPEDDQRANRTLFLGNLDITVSETDLRRAFDRFGVITEVDIKRPGRGQTSTYGFLKFENLDMAHRAKLAMSGKVLLRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAQAACTHMRGFPLGGPDRRLRVDFADTEHRYQQPYLQPLPLPPPAHYELVAEAAAFGAHRGAPPDPLRGARDRTPPLLYRDRDRDLYPETEWVPPPPPVRDRSNRAAAYDPLESLERRRDGWSLERDRGERELGSSRDQPRKRRLAEDGGRHLDRSPDSERSSSSRKRHCLTTTTPPDRSPELVGGRERYSSDPERSSSRLLLLERPSPIRESRRGSLERGQNEKRDRKNSAERERKHRTSAAATAQECKSPAKKDERAAEGGGGGSRLKPPPQKQQQDGASQAGGAPKLCLAWQGMLLLKNSNFPSNMHLLQGDLGVASSLLVEGATGGKVAQLKITQRLRLDQPKLDEVNRRIKVAGPNGYAILLAVPGTSDNRSAAGAGEAATTSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENSGVLHAFPPCDFSQQFLDSTAKALAKSEDDYLVMIIVRGAS", "length": 955 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1RCY7-1", "protein_name": "RNA-binding protein 15", "gene_name": "rbm15", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKGKERSPVKKRSRALDDIRDRGGSHPTSKKMGVISNSGGGSNNGNSSSKSDGGSARRGLLGDKRDGREFDGHVSSRTGNNHGYTSPVASSSGKNHASSLSLEAARTNSRGEARAPLPTNESEYKTLKISELGSQLSDEEIEDGLFHEFKKFGDVSVKISRVNDERIAFVNFRRPDDARAAKHARGRLVLYDRPLKIEAVYLNRRRSRSPVKEDHFSVVAGHRHLHTQRPLSPTGLGYRDYRLQQLALGRLPPPPPPPLPRELEREREFAFYEARARPAYIAERAAPFREEDFISPEDDQRANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDMAHRAKISMSGKVVGRNPIKIGYGKATPTTRLWVGGLGPWVPLTALAREFDRFGTIRTIDYRKGDTWAYIQYESLDAAQAACTHMRGFPLGGPDRRLRVDFADTEHRYQQQFLQPLPLQHYEIMAESFVHRATPEAIRVRERTPPPLHFRERELYAGAEWPAPTIRERVRTPAFEPLEHLERERRREAWSLERELPGREAARKRRLMEDGRHLECSPDSSSEWAARRRRPPSLEGSPGGSSRDGRFSDSERPARADRVSPARESRSSLDRVPGEKRIKSNSNLSESSIGASPAERKRKAGDSAKGASKRDRSESSSKSNQASKQDAGGKLSMAWNGMLLLKNSNFPASMHLLEGDLSVATSLLIDGSTGGKVSQLRITQRLRLDQPKIDEVSRRIKVAGPGGYAVLLAVPGSSEETSSSDPAASTQRPLRNLVSYLKQKQAAGVISLPVGGSRDKDNTGVLHAFPPCDFSQQFLDSSAKALAKTEEDFLVMIVVRGAS", "length": 853 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "M0R3Z8-1", "protein_name": "RNA-binding protein 15", "gene_name": "Rbm15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSAGREPLPRRSPRWRRASPLCETSAGWRVSQLRRDDLRRPSTMKGKERSPVKPKRSRGGEDSSSRGERSKKLGGSGGSNGSSSGKTDSGGSRRSLHLDKSSSRGGSREYDTGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGVEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDTYAPSSSVVGSSVGSHRHAPGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYDRVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKIAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDTFGHRAPDPLRSARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSARAATSAVTAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKQRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLLERPSPVRDRRGSLEKSQSDKRDRKNSASAERDRKHRTAAPTEGKTPLKKEDRSDGNTPSASTSSSKQKPPSQKQDGGTAPVAASSPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSATSDTAASTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNIG", "length": 962 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VBL3-1", "protein_name": "RNA-binding protein 15", "gene_name": "Rbm15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRSAGREPLPRRSPRWRRASPLCETSAGWRVSQLRRDDLRRPSTMKGKERSPVKPKRSRGGEDSSSRGERSKKLGGSGGSNGSSSGKTDSGGSRRSLHLDKSSSRGGSREYETGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGVEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDAYAPSSSVVGTSVGSHRHAPGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRELERERDYPFYDRVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTENDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDTFGHRAPDPLRSARDRTPPLLYRDRDRDLYTDSDWVPPPPPVRERSARAATSAVTAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESERPRKQRHCTPSPDRSPELSSNRDRYNSDNDRSSRLLLLERSSPVRDRRGSLEKSQSDKRDRKNSASAERDRKHRTAAPTEGKNPLKKEDRSDGNAPSASTSSSKQKPPSQKQDGGTAPVAASSPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSATSDTAASTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVNSG", "length": 962 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7KMJ6-1", "protein_name": "RNA-binding protein spenito", "gene_name": "nito", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSHRDGAGADRITIKIHNMKRSASRSPGPASRSSLSRNSRSMGRGYDNGSGVPGDSPERLSPERMRRRLDRSPSRYGSPHREPYMRGPPPAERPAGYKVLCVSALPPKAPDDFIEETLYREYKKFGDFSVRLAHDLDERVAYVCFRTPEDAREAKHHKPRLIIYDKMAIVEPVYKSTTRPEYRPRGHSMSPPDYERYHYSRSPMGQGVPLDHRRPPIDPYDRYGPPHMHPHAVHPRDYRPLHHDYPHPPRGPPLHRGGHPHHLHGHAPPHQYAPMRPLAPRPHAPYEKPESKKDKFPNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDFAELPGATPAAPFKSSKPPYDESALEYRRPEYDPYYEESAAYAPRGGYSPYPPRGGYRGRGGYRGRGRGMYHYHNDVHRPPHPGSLAGSSSSVPPPGGVEDEWRRPPGESYDRGARSSSREPGVERSRSRSPLKRARSPGSDSDTSTRRNDALASASTVPDVARKCSTVWTGALILKSSLFPAKFHLTDGDTDIVESLMRDEEGKHNLRITQRLRLDPPKLDDVQKRIASSSSHAIFMGLAGSTNDTNCDDASVQTRPLRNLVSYLKQKEAAGVISLLNKETEATGVLYAFPPCDFSTELLKRTCHSLTEEGLKEDHLVIVVVRGGTA", "length": 793 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q96T37-1", "protein_name": "RNA-binding protein 15", "gene_name": "RBM15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRGGEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSSSRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGAEYKTLKISELGSQLSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVLYDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQRSLSPGGAALGYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRTAATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRKNSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQIGVRYENKKRENLALTLL", "length": 977 }, "evidence": [ { "id": "F1S619", "url": "https://omabrowser.org/oma/group/F1S619/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "RNA N6-methyladenosine methyltransferase complex", "id": "GO:0036396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036396", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of myeloid cell differentiation", "id": "GO:0045637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045637", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "regulation of megakaryocyte differentiation", "id": "GO:0045652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045652", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "dosage compensation by inactivation of X chromosome", "id": "GO:0009048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009048", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "RNA methylation", "id": "GO:0001510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001510", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" }, { "name": "thrombopoietin-mediated signaling pathway", "id": "GO:0038163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038163", "evidence": [ { "database": "UniProtKB", "id": "F1S619", "url": "https://www.uniprot.org/uniprotkb/F1S619" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 170, "end_pos": 252, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S619", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S619" }, { "id": "PS50917", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50917" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPOC", "eco_id": "ECO_0000259", "start_pos": 779, "end_pos": 958, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R493-1", "uniprot_ac": "A0A5G2R493", "uniprot_id": "A0A5G2R493_PIG", "mass": { "chemical_mass": 117150.0, "monoisotopic_mass": 117150.0 }, "refseq": {}, "gene_names": [ { "name": "TMPRSS15", "type": "recommended", "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" } ] } ], "protein_names": [ { "name": "Transmembrane serine protease 15", "type": "synonym", "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAQ8#function" }, { "database": "UniProtKB", "id": "PIRNR001138", "url": "https://www.uniprot.org/uniprotkb/PIRNR001138#function" }, { "database": "UniProtKB", "id": "ARBA00059176", "url": "https://www.uniprot.org/uniprotkb/ARBA00059176#function" }, { "database": "UniProtKB", "id": "F1SHP8", "url": "https://www.uniprot.org/uniprotkb/F1SHP8#function" }, { "database": "UniProtKB", "id": "A0A5G2QYZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYZ0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R493", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMPRSS15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493", "locus": { "chromosome": "13", "start_pos": 182829843, "end_pos": 182987908, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012019", "url": "https://www.ensembl.org/id/ENSSSCG00000012019" } ] } } ], "crossref": [ { "id": "A0A5G2R493", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R493", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012019", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012019", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "THGICNG", "url": "https://omabrowser.org/oma/group/THGICNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00629", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AAQ8", "url": "https://www.uniprot.org/uniprotkb/A0A287AAQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYZ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R493", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R493-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHP8", "url": "https://www.uniprot.org/uniprotkb/F1SHP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSKRIIPSRHRSLSTYEVMFTALFAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGTMKITSGVTYNPNLQDKLSVDFKVLAFDIQQMIGEIFQSSNLKNEYKNSRVLQFENGSVIVIFDLLFAQWVSDENIKEELIQGIEANKSSQLVAFHIDVNSIDITESLENYSTTSPSTTSDKLTTSSPPATPGNVSIECLPGSRPCADALKCIAVDLFCDGELNCPDGSDEDSKICATACDGKFLLTESSGSFDAAQYPKLSEASVVCQWIIRVNQGLSIELNFSYFNTYSMDVLNIYEGVGSSKILRASLWLMNPGTIRIFSNQVTVTFLIESDENDYIGFNATYTAFNSTELNNDEKINCNFEDGFCFWIQDLNDDNEWERIQGTTFPPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLEPTLEPVCLSFWYYMYGENVYKLSINISNDQNMEKIIFQKEGNYGENWNYGQVTLNETVEFKVAFNAFKNQFLSDIALDDISLTYGICNVSLYPEPTLVPTSPPELPTDCGGPFELWEPNTTFTSMNFPNNYPNQAFCVWNLNAQKGKNIQLHFEEFDLENIADVVEIRDGEEDDSLLLAVYTGPGPVEDVFSTTNRMTVLFITNDALTKGGFKANFTTGYHLGIPEPCKEDNFQCENGECVLLVNLCDGFSHCKDGSDEAHCVRFLNGTANNSGLVQFRIQSIWHTACAENWTTQTSDDVCQLLGLGTGNSSMPFFSSGGGPFVKLNTAPNGSLILTASEQCFEDSLILLQCNYKSCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEEGGIDSCQRISTAFLLLQTVTFHFYLWRICLLLLGRPEIRNKTNFYQQELHIKCLKRQGINDVRLMSDSRVEYQ", "length": 1049, "header": "tr|A0A5G2R493-1|A0A5G2R493_PIG Isoform 1 of Transmembrane serine protease 15 OS=Sus scrofa OX=9823 GN=TMPRSS15 PE=3 SV=1 CANONICAL=A0A5G2R493-1" }, "isoforms": [ { "isoform_ac": "A0A287AAQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAQ8/entry", "sequence": { "sequence": "MGSKRIIPSRHRSLSTYEVMFTALFAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGTMKITSGVTYNPNLQDKLSVDFKVLAFDIQQMIGEIFQSSNLKNEYKNSRVLQFENGSVIVIFDLLFAQWVSDENIKEELIQGIEANKSSQLVAFHIDVNSIDITGICEYYLIFFESLNKLTTSSPPATPGNVSIECLPGSRPCADALKCIAVDLFCDGELNCPDGSDEDSKICATACDGKFLLTESSGSFDAAQYPKLSEASVVCQWIIRVNQGLSIELNFSYFNTYSMDVLNIYEGVGSSKILRASLWLMNPGTIRIFSNQVTVTFLIESDENDYIGFNATYTAFNSTELNNDEKINCNFEDGFCFWIQDLNDDNEWERIQGTTFPPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLEPTLEPVCLSFWYYMYGENVYKLSINISNDQNMEKIIFQKEGNYGENWNYGQVTLNETVEFKVAFNAFKNQFLSDIALDDISLTYGICNVSLYPEPTLVPTSPPELPTDCGGPFELWEPNTTFTSMNFPNNYPNQAFCVWNLNAQKGKNIQLHFEEFDLENIADVVEIRDGEEDDSLLLAVYTGPGPVEDVFSTTNRMTVLFITNDALTKGGFKANFTTGYHLGIPEPCKEDNFQCENGECVLLVNLCDGFSHCKDGSDEAHCVRFLNGTANNSGLVQFRIQSIWHTACAENWTTQTSDDVCQLLGLGTGNSSMPFFSSGGGPFVKLNTAPNGSLILTASEQCFEDSLILLQCNYKSCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEEGGIDSCQGDSGGPLMCLENNRWLLAGVTSFGYQCALPNRPGVYARVPKFTEWIQSFLH", "length": 1032, "header": "tr|A0A287AAQ8-1|A0A287AAQ8_PIG Computationally mapped isoform of Enteropeptidase OS=Sus scrofa OX=9823 GN=TMPRSS15 PE=3 SV=2 CANONICAL=A0A5G2R493-1" }, "locus": { "chromosome": "13", "start_pos": 182987740, "end_pos": 182830419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057489.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057489.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040973.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040973.2" } ] } }, { "isoform_ac": "A0A5G2QYZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYZ0/entry", "sequence": { "sequence": "MGSKRIIPSRHRSLSTYEVMFTALFAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGTMKITSGVTYNPNLQDKLSVDFKVLAFDIQQMIGEIFQSSNLKNEYKNSRVLQFENGSVIVIFDLLFAQWVSDENIKEELIQGIEANKSSQLVAFHIDVNSIDITESLENYSTTSPSTTSDKLTTSSPPATPGNVSIECLPGSRPCADALKCIAVDLFCDGELNCPDGSDEDSKICATACDGKFLLTESSGSFDAAQYPKLSEASVVCQWIIRVNQGLSIELNFSYFNTYSMDVLNIYEGVGSSKILRGFYISTPTGPGGRQERVGLLSLPLEPTLEPVCLSFWYYMYGENVYKLSINISNDQNMEKIIFQKEGNYGENWNYGQVTLNETVEFKVAFNAFKNQFLSDIALDDISLTYGICNVSLYPEPTLVPTSPPELPTDCGGPFELWEPNTTFTSMNFPNNYPNQAFCVWNLNAQKGKNIQLHFEEFDLENIADVVEIRDGEEDDSLLLAVYTGPGPVEDVFSTTNRMTVLFITNDALTKGGFKANFTTGYHLGIPEPCKEDNFQCENGECVLLVNLCDGFSHCKDGSDEAHCVRFLNGTANNSGLVQFRIQSIWHTACAENWTTQTSDDVCQLLGLGTGNSSMPFFSSGGGPFVKLNTAPNGSLILTASEQCFEDSLILLQCNYKSCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEEGGIDSCQGDSGGPLMCLENNRWLLAGVTSFGYQCALPNRPGVYARVPKFTEWIQSFLH", "length": 937, "header": "tr|A0A5G2QYZ0-1|A0A5G2R493_PIG Computationally mapped isoform of Transmembrane serine protease 15 OS=Sus scrofa OX=9823 GN=TMPRSS15 PE=3 SV=1 CANONICAL=A0A5G2R493-1" }, "locus": { "chromosome": "13", "start_pos": 182987740, "end_pos": 182830419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080540.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080540.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070116.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070116.1" } ] } }, { "isoform_ac": "A0A5G2R493-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493/entry", "sequence": { "sequence": "MGSKRIIPSRHRSLSTYEVMFTALFAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGTMKITSGVTYNPNLQDKLSVDFKVLAFDIQQMIGEIFQSSNLKNEYKNSRVLQFENGSVIVIFDLLFAQWVSDENIKEELIQGIEANKSSQLVAFHIDVNSIDITESLENYSTTSPSTTSDKLTTSSPPATPGNVSIECLPGSRPCADALKCIAVDLFCDGELNCPDGSDEDSKICATACDGKFLLTESSGSFDAAQYPKLSEASVVCQWIIRVNQGLSIELNFSYFNTYSMDVLNIYEGVGSSKILRASLWLMNPGTIRIFSNQVTVTFLIESDENDYIGFNATYTAFNSTELNNDEKINCNFEDGFCFWIQDLNDDNEWERIQGTTFPPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLEPTLEPVCLSFWYYMYGENVYKLSINISNDQNMEKIIFQKEGNYGENWNYGQVTLNETVEFKVAFNAFKNQFLSDIALDDISLTYGICNVSLYPEPTLVPTSPPELPTDCGGPFELWEPNTTFTSMNFPNNYPNQAFCVWNLNAQKGKNIQLHFEEFDLENIADVVEIRDGEEDDSLLLAVYTGPGPVEDVFSTTNRMTVLFITNDALTKGGFKANFTTGYHLGIPEPCKEDNFQCENGECVLLVNLCDGFSHCKDGSDEAHCVRFLNGTANNSGLVQFRIQSIWHTACAENWTTQTSDDVCQLLGLGTGNSSMPFFSSGGGPFVKLNTAPNGSLILTASEQCFEDSLILLQCNYKSCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEEGGIDSCQRISTAFLLLQTVTFHFYLWRICLLLLGRPEIRNKTNFYQQELHIKCLKRQGINDVRLMSDSRVEYQ", "length": 1049, "header": "tr|A0A5G2R493-1|A0A5G2R493_PIG Isoform 1 of Transmembrane serine protease 15 OS=Sus scrofa OX=9823 GN=TMPRSS15 PE=3 SV=1 CANONICAL=A0A5G2R493-1" }, "locus": { "chromosome": "13", "start_pos": 182987740, "end_pos": 182834029, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084457.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084457.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069010.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069010.1" } ] } }, { "isoform_ac": "F1SHP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHP8/entry", "sequence": { "sequence": "MGSKRIIPSRHRSLSTYEVMFTALFAILMVLCAGLIAVSWLTIKGSEKDAALGKSHEARGTMKITSGVTYNPNLQDKLSVDFKVLAFDIQQMIGEIFQSSNLKNEYKNSRVLQFENGSVIVIFDLLFAQWVSDENIKEELIQGIEANKSSQLVAFHIDVNSIDITESLENYSTTSPSTTSDKLTTSSPPATPGNVSIECLPGSRPCADALKCIAVDLFCDGELNCPDGSDEDSKICATACDGKFLLTESSGSFDAAQYPKLSEASVVCQWIIRVNQGLSIELNFSYFNTYSMDVLNIYEGVGSSKILRASLWLMNPGTIRIFSNQVTVTFLIESDENDYIGFNATYTAFNSTELNNDEKINCNFEDGFCFWIQDLNDDNEWERIQGTTFPPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLEPTLEPVCLSFWYYMYGENVYKLSINISNDQNMEKIIFQKEGNYGENWNYGQVTLNETVEFKVAFNAFKNQFLSDIALDDISLTYGICNVSLYPEPTLVPTSPPELPTDCGGPFELWEPNTTFTSMNFPNNYPNQAFCVWNLNAQKGKNIQLHFEEFDLENIADVVEIRDGEEDDSLLLAVYTGPGPVEDVFSTTNRMTVLFITNDALTKGGFKANFTTGYHLGIPEPCKEDNFQCENGECVLLVNLCDGFSHCKDGSDEAHCVRFLNGTANNSGLVQFRIQSIWHTACAENWTTQTSDDVCQLLGLGTGNSSMPFFSSGGGPFVKLNTAPNGSLILTASEQCFEDSLILLQCNYKSCGKKQVAQEVSPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAILGLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEEGGIDSCQGDSGGPLMCLENNRWLLAGVTSFGYQCALPNRPGVYARVPKFTEWIQSFLH", "length": 1034, "header": "tr|F1SHP8-1|A0A5G2R493_PIG Computationally mapped isoform of Transmembrane serine protease 15 OS=Sus scrofa OX=9823 GN=TMPRSS15 PE=3 SV=3 CANONICAL=A0A5G2R493-1" }, "locus": { "chromosome": "13", "start_pos": 182987740, "end_pos": 182830419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013150.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013150.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012801.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012801.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 191, "start_aa": "Thr", "end_pos": 191, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr191", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHP8", "url": "https://www.uniprot.org/uniprotkb/F1SHP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LTS6-1", "protein_name": "Enteropeptidase", "gene_name": "Tmprss15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "KSIRNVAAGHRSISSFEVMVSALFMVLMVLSVGLIVVSWLAVKESETDAAALGKSHEVRGRFKITSGVTYNPNLQDKFSVDFKVLAFDLQQMIDEIFESSNLKNEYKKSRVFQFENGSVIVLFDLFFAQWVSDENVKEELIQGIEANISSQLVTLHIDLNSIDIAASLSNFSTPFPLTTSDKIASSLMTTSGSLDNFSTPTVTTTSGSLDNFSTPIGTTTSGNVSVECQPGSRPCANAWDCVATDLFCDGEVNCPDGADEDTGLCATACDGRFLLTGDSGVFQANRYPRPDESGVVCRWIIRVNQGLSVRMSFGKFISHYTDVLDIYEGIGPSKILRGSFWETDPGTIRIFSNQVTVTFLIKSDEYDYIGFNATYSTFNSSEINNYEKINCTFDDGFCFWTQDLDDDNEWERNQMARFPCYTGPFSDHTFGNESGFYISTPAEQAWKSERVGLSSLSLGFTSEPVCLHFWYYMCCENVYNLNIHVSSTETTDKIVFQRQGNYGRNWNYGQVTLNETVEFKVVFNAFRNRGCSTIALDDISLTNGICSESPYPEPTLVPTPPPEHPTDCGGPFELWEPNTTFSSPNFPDNYPNQAFCIWNLNAQSGKNIQLHFQEFDLENINDVVEVRDGVKFDSLLLAVYTGRGPVKDLFSTTNRMTVIFDTDMKNGGKGFKANFTSGYYLGIPQPCQDDEFQCKDGNCIPMGNLCDSYQHCSDGSDEAHCVRFLNGTQSNNGLVQFNIHNIWHIACAEPWTTQISNEVCHLLGLGSANSSMPILSTGGGPFVRLNEAPNGSLILTPSLQCSQDSLILLQCNHKSCGEKMVTQKVGPKIVGGSDTQAGAWPWVVALYYRDRSGDRLLCGASLVSSDWLVSAAHCVYRRNLDPTRWTAVLGLHMQSNLTSPQVVRRVVDRIVINPHYDKRRKVNDIAMMHLEFKVNYTDYIQPICLPEENQTFTPGRMCSIAGWGYNKINAGSTVDVLKEADVPLVSNEKCQQQLPEYDITESMLCAGYEEGGTDSCQGDSGGPLMCQENNRWFLVGVTSFGVQCALPNHPGVYARVSQFIEWIHSFLH", "length": 1068 }, "evidence": [ { "id": "A0A5G2R493", "url": "https://omabrowser.org/oma/group/A0A5G2R493/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P97435-1", "protein_name": "Enteropeptidase", "gene_name": "Tmprss15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSRDEAVGHHSISSFEVMLSALFIMLMVFSIGLIAVSWLAVKESEGDAALGKSHEVRGTFKITSGVTYNPNLQDKHSVDFKVLAFDLQQMIDEIFESSSLKNEYEKSKVFQFEKGSVIVLFDLFFAQWVSDKNVKEELIQGIEANISSQLVTLHIDLNSIDITASLSDFTTAVPVTTSDKLTTSSPMTTSASLGNLSTTVAATTSAPLCNLSTATFATTSGHVSIECQPGSRPCAHAWNCVATDLFCDGEVNCPDGSDEDTGLCATACDGRFLLTGDSGVFQADRYPRPDESGVVCRWIIRVNQGLSIRMNFGSFIPHYTDVLDIYEGIGPSKILRGSFWETDPGTIRIFSNLVTVTFLIKSDEYDYIGFNATYSTFNNSELNNYEKIDCTFDDGFCFWTQDLDDDNEWERIQVTTFPCYTGPRFDHTYGNGSGFYISTPTEQGWRSERVGLSSLSLDLTSEPVCLHFWYYMCCENVYNLNIHISSAETTDKIVFQRKGNYGRNWNYGQVTLNETGEFKVVFNAFRNRGCSTIALDDISLTNGICSQSPYPEPTLVPTPPPELPTDCGGPFELWEPNSTFSSPNFPDKYPNQASCIWNLNAQRGKNIQLHFQEFDLENINDVVEVRDGGEFDSLLLAVYTGPGPVKDLFSTTNRMTVIFTTNMETRRKGFKANFTSGYYLGIPEPCQDDEFQCKDGNCIPLGNLCDSYPHCRDGSDEASCVRFLNGTRSNNGLVQFNIHSIWHIACAENWTTQISNEVCHLLGLGSANSSMPISSTGGGPFVRVNQAPNGSLILTPSLQCSQDSLILLQCNHKSCGEKKVTQKVSPKIVGGSDAQAGAWPWVVALYHRDRSTDRLLCGASLVSSDWLVSAAHCVYRRNLDPTRWTAVLGLHMQSNLTSPQVVRRVVDQIVINPHYDRRRKVNDIAMMHLEFKVNYTDYIQPICLPEENQIFIPGRTCSIAGWGYDKINAGSTVDVLKEADVPLISNEKCQQQLPEYNITESMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLVGVTSFGVQCALPNHPGVYVRVSQFIEWIHSFLH", "length": 1069 }, "evidence": [ { "id": "A0A5G2R493", "url": "https://omabrowser.org/oma/group/A0A5G2R493/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P98073-1", "protein_name": "Enteropeptidase", "gene_name": "TMPRSS15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSKRGISSRHHSLSSYEIMFAALFAILVVLCAGLIAVSCLTIKESQRGAALGQSHEARATFKITSGVTYNPNLQDKLSVDFKVLAFDLQQMIDEIFLSSNLKNEYKNSRVLQFENGSIIVVFDLFFAQWVSDENVKEELIQGLEANKSSQLVTFHIDLNSVDILDKLTTTSHLATPGNVSIECLPGSSPCTDALTCIKADLFCDGEVNCPDGSDEDNKMCATVCDGRFLLTGSSGSFQATHYPKPSETSVVCQWIIRVNQGLSIKLSFDDFNTYYTDILDIYEGVGSSKILRASIWETNPGTIRIFSNQVTATFLIESDESDYVGFNATYTAFNSSELNNYEKINCNFEDGFCFWVQDLNDDNEWERIQGSTFSPFTGPNFDHTFGNASGFYISTPTGPGGRQERVGLLSLPLDPTLEPACLSFWYHMYGENVHKLSINISNDQNMEKTVFQKEGNYGDNWNYGQVTLNETVKFKVAFNAFKNKILSDIALDDISLTYGICNGSLYPEPTLVPTPPPELPTDCGGPFELWEPNTTFSSTNFPNSYPNLAFCVWILNAQKGKNIQLHFQEFDLENINDVVEIRDGEEADSLLLAVYTGPGPVKDVFSTTNRMTVLLITNDVLARGGFKANFTTGYHLGIPEPCKADHFQCKNGECVPLVNLCDGHLHCEDGSDEADCVRFFNGTTNNNGLVRFRIQSIWHTACAENWTTQISNDVCQLLGLGSGNSSKPIFPTDGGPFVKLNTAPDGHLILTPSQQCLQDSLIRLQCNHKSCGKKLAAQDITPKIVGGSNAKEGAWPWVVGLYYGGRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPICLPEENQVFPPGRNCSIAGWGTVVYQGTTANILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYKCALPNRPGVYARVSRFTEWIQSFLH", "length": 1019 }, "evidence": [ { "id": "A0A5G2R493", "url": "https://omabrowser.org/oma/group/A0A5G2R493/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R493", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R493", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R493", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1016, "end_pos": 1018, "annotation": "n_glycosylation_sequon" }, { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 645, "end_pos": 647, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 740, "end_pos": 742, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" }, { "start_pos": 863, "end_pos": 865, "annotation": "n_glycosylation_sequon" }, { "start_pos": 902, "end_pos": 904, "annotation": "n_glycosylation_sequon" }, { "start_pos": 964, "end_pos": 966, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R493-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1049, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R493-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R493" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 240, "end_pos": 349, "start_aa": "Cys", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" }, { "id": "PS50060", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50060" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAM", "eco_id": "ECO_0000259", "start_pos": 360, "end_pos": 519, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 800, "end_pos": 983, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" }, { "id": "PS50024", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50024" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEA", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 169, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R493" }, { "id": "PS50287", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRCR", "eco_id": "ECO_0000259", "start_pos": 693, "end_pos": 803, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 191 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1016, "end_pos": 1018 }, { "start_pos": 116, "end_pos": 118 }, { "start_pos": 147, "end_pos": 149 }, { "start_pos": 170, "end_pos": 172 }, { "start_pos": 194, "end_pos": 196 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 343, "end_pos": 345 }, { "start_pos": 350, "end_pos": 352 }, { "start_pos": 403, "end_pos": 405 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 645, "end_pos": 647 }, { "start_pos": 697, "end_pos": 699 }, { "start_pos": 701, "end_pos": 703 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 740, "end_pos": 742 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 804, "end_pos": 806 }, { "start_pos": 863, "end_pos": 865 }, { "start_pos": 902, "end_pos": 904 }, { "start_pos": 964, "end_pos": 966 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R1G5-1", "uniprot_ac": "A0A5G2R1G5", "uniprot_id": "A0A5G2R1G5_PIG", "mass": { "chemical_mass": 22235.0, "monoisotopic_mass": 22235.0 }, "refseq": { "ac": "XP_005654252", "name": "39S ribosomal protein S18a, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654252" }, "gene_names": [ { "name": "MRPS18A", "type": "recommended", "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ] }, { "name": "MRPS18A", "type": "synonym", "evidence": [ { "id": "XP_005654252", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654252" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein mL66", "type": "recommended", "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5/entry#names_and_taxonomy" } ] }, { "name": "39S ribosomal protein S18a, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005654252", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654252" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPS18A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5", "locus": { "chromosome": "7", "start_pos": 38635967, "end_pos": 38657253, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001692", "url": "https://www.ensembl.org/id/ENSSSCG00000001692" } ] } } ], "crossref": [ { "id": "A0A5G2R1G5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1G5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001692", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001692", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154748", "url": "https://www.ncbi.nlm.nih.gov/gene/100154748", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "4V1A", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4V1A&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GB2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR001648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154748", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154748", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LPDHRPK", "url": "https://omabrowser.org/oma/group/LPDHRPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RRH6", "url": "https://www.orthodb.org/?gene=F1RRH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13479", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13479", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13479:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13479:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00004v1a", "url": "https://www.rcsb.org/structure/pdb_00004v1a", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005aj4", "url": "https://www.rcsb.org/structure/pdb_00005aj4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gb2", "url": "https://www.rcsb.org/structure/pdb_00006gb2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsh", "url": "https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oiq", "url": "https://www.rcsb.org/structure/pdb_00008oiq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4V1A", "url": "https://www.rcsb.org/structure/4V1A", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.rcsb.org/structure/5AJ4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.rcsb.org/structure/7NSH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.rcsb.org/structure/8OIQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005654252", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654252", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V743", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V743", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V743-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V743-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1RQA4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RQA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1RQA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RQA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRH6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGLNVLVSGCGRLLRGLLAGPAATSWARPPSRGFREVVEILDGKTTIIEGRITETPQESPNPPNPTGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCQEEHLKIEECVKMAHRAGLLPNHRPKLPEGFVPKSKPRLNRYLTRWSPRSVKPIYNKGHRWNKVRMPVGSPLLKDNVSYSGRPLLLYH", "length": 196, "header": "tr|A0A5G2R1G5-1|A0A5G2R1G5_PIG Isoform 1 of Large ribosomal subunit protein mL66 OS=Sus scrofa OX=9823 GN=MRPS18A PE=1 SV=1 CANONICAL=A0A5G2R1G5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V743-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V743/entry", "sequence": { "sequence": "MVGLNVLVSGCGRLLRGLLAGPAATSWARPPSRGFREVVEILDGKTTIIEGRITETPQESPNPPNPTGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCQEEHLKIEECVKMAHRAGT", "length": 127, "header": "tr|A0A4X1V743-1|A0A5G2R1G5_PIG Computationally mapped isoform of Large ribosomal subunit protein mL66 OS=Sus scrofa OX=9823 GN=MRPS18A PE=1 SV=1 CANONICAL=A0A5G2R1G5-1" }, "locus": { "chromosome": "7", "start_pos": 38657044, "end_pos": 38642114, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102963.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102963.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078002.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078002.1" } ] } }, { "isoform_ac": "A0A5G2R1G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5/entry", "sequence": { "sequence": "MVGLNVLVSGCGRLLRGLLAGPAATSWARPPSRGFREVVEILDGKTTIIEGRITETPQESPNPPNPTGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCQEEHLKIEECVKMAHRAGLLPNHRPKLPEGFVPKSKPRLNRYLTRWSPRSVKPIYNKGHRWNKVRMPVGSPLLKDNVSYSGRPLLLYH", "length": 196, "header": "tr|A0A5G2R1G5-1|A0A5G2R1G5_PIG Isoform 1 of Large ribosomal subunit protein mL66 OS=Sus scrofa OX=9823 GN=MRPS18A PE=1 SV=1 CANONICAL=A0A5G2R1G5-1" }, "locus": { "chromosome": "7", "start_pos": 38657044, "end_pos": 38641977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069014.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069014.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064362.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064362.1" } ] } }, { "isoform_ac": "A0A8D1RQA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RQA4/entry", "sequence": { "sequence": "GFQDGGSQCSGVWLWTATPRAPGRPGRDQLGSASISRLQRRNSSVLRGKPRGLSGHWYSFGCLELKSRNSQVVVEILDGKTTIIEGRITETPQESPNPPNPTGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCQEEHLKIEECVKMAHRAGLLPNHRPKLPEGFVPKSKPRLNRYLTRWSPRSVKPIYNKGHRWNKVRMPVGSPLLKDNVSYSGRPLLLYH", "length": 231, "header": "tr|A0A8D1RQA4-1|A0A8D1RQA4_PIG Computationally mapped isoform of Large ribosomal subunit protein mL66 OS=Sus scrofa OX=9823 GN=MRPS18A PE=3 SV=1 CANONICAL=A0A5G2R1G5-1" }, "locus": { "chromosome": "7", "start_pos": 38657054, "end_pos": 38641977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105704.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105704.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079057.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079057.1" } ] } }, { "isoform_ac": "F1RRH6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRH6/entry", "sequence": { "sequence": "MFWCLAVDGYSEGSWQARPRPAGLGLHLAASEKIEGRITETPQESPNPPNPTGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCQEEHLKIEECVKMAHRAGLLPNHRPKLPEGFVPKSKPRLNRYLTRWSPRSVKPIYNKGHRWNKVRMPVGSPLLKDNVSYSGRPLLLYH", "length": 181, "header": "tr|F1RRH6-1|F1RRH6_PIG Computationally mapped isoform of Large ribosomal subunit protein mL66 OS=Sus scrofa OX=9823 GN=MRPS18A PE=1 SV=4 CANONICAL=A0A5G2R1G5-1" }, "locus": { "chromosome": "7", "start_pos": 38657031, "end_pos": 38641977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001889.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001889.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001842.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001842.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The complete structure of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leibundgut Marc, Bieri Philipp, Leitner Alexander, Schmitz Nikolaus, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "25271403", "url": "https://glygen.org/publication/PubMed/25271403" } ] }, { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1RRH6", "url": "https://www.uniprot.org/uniprotkb/F1RRH6" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100154748", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154748", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6PDU2-1", "protein_name": "Large ribosomal subunit protein mL66", "gene_name": "Mrps18a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRALVSGCGRQLQTLLAGPAATGWLWLPARGLREVVKIQEGKTTVIEGRVTESPKATPDPPNPSGQCPICRWNLKHKYNYEDVLLLSQFIRPHGGMLPRRITGLCREEHRKMEECVKMAHRAGLFPNHRPRLPEGCSPKDKPKLNRYLTRWAPKSVKPIYKKGHPWNKNAGIKCTPAWEDPHEDGARAVTRPVGYNP", "length": 200 }, "evidence": [ { "id": "A0A5G2R1G5", "url": "https://omabrowser.org/oma/group/A0A5G2R1G5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99N85-1", "protein_name": "Large ribosomal subunit protein mL66", "gene_name": "Mrps18a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALRRLVSGCGRQLQAFLAGPAATGWLWLPARGLREVVKIQEGKTTVIEGRITETPKATPDPPNPSGQCPICRWNLKHKYTYEDVLLLSQFIRPYGGMLPRRVTGLCREEHRKIEECVKMAHRAGLLPNHRPQLPEGCLPKDKPKLNRYLTRWAPKSVKPIYKKGHRWNKVGMAVGSPLLKDNVCYSRRPLKMMH", "length": 196 }, "evidence": [ { "id": "A0A5G2R1G5", "url": "https://omabrowser.org/oma/group/A0A5G2R1G5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVS2-1", "protein_name": "Large ribosomal subunit protein mL66", "gene_name": "MRPS18A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESPNPPNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQLNRYLTRWAPGSVKPIYKKGPRWNRVRMPVGSPLLRDNVCYSRTPWKLYH", "length": 196 }, "evidence": [ { "id": "A0A5G2R1G5", "url": "https://omabrowser.org/oma/group/A0A5G2R1G5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "mitochondrial small ribosomal subunit", "id": "GO:0005763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005763", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "small ribosomal subunit rRNA binding", "id": "GO:0070181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070181", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" }, { "name": "2 iron, 2 sulfur cluster binding", "id": "GO:0051537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051537", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R1G5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R1G5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1G5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" }, { "id": "7NSI", "database": "PDB", "url": "https://www.rcsb.org/structure/7NSI" } ], "binding_site_uniprot": 108, "amino_acid": "Cys", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 108, "end_pos": 108, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" }, { "id": "7NSI", "database": "PDB", "url": "https://www.rcsb.org/structure/7NSI" } ], "binding_site_uniprot": 111, "amino_acid": "Glu", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 111, "end_pos": 111, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "5AJ4", "database": "PDB", "url": "https://www.rcsb.org/structure/5AJ4" }, { "id": "4V1A", "database": "PDB", "url": "https://www.rcsb.org/structure/4V1A" } ], "binding_site_uniprot": 55, "amino_acid": "Glu", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 55, "end_pos": 55, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "5AJ4", "database": "PDB", "url": "https://www.rcsb.org/structure/5AJ4" }, { "id": "4V1A", "database": "PDB", "url": "https://www.rcsb.org/structure/4V1A" } ], "binding_site_uniprot": 58, "amino_acid": "Gln", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 58, "end_pos": 58, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" }, { "id": "7NSI", "database": "PDB", "url": "https://www.rcsb.org/structure/7NSI" } ], "binding_site_uniprot": 70, "amino_acid": "Cys", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 70, "end_pos": 70, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R1G5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G5" }, { "id": "7NSI", "database": "PDB", "url": "https://www.rcsb.org/structure/7NSI" } ], "binding_site_uniprot": 73, "amino_acid": "Cys", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 73, "end_pos": 73, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "5AJ4", "database": "PDB", "url": "https://www.rcsb.org/structure/5AJ4" }, { "id": "4V1A", "database": "PDB", "url": "https://www.rcsb.org/structure/4V1A" } ], "binding_site_uniprot": 93, "amino_acid": "Ile", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 93, "end_pos": 93, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "7NQL", "database": "PDB", "url": "https://www.rcsb.org/structure/7NQL" }, { "id": "6YDW", "database": "PDB", "url": "https://www.rcsb.org/structure/6YDW" } ], "binding_site_uniprot": 96, "amino_acid": "His", "chebi_lig_id": "CHEBI:29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 96, "end_pos": 96, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S797-1", "uniprot_ac": "F1S797", "uniprot_id": "F1S797_PIG", "mass": { "chemical_mass": 63845.0, "monoisotopic_mass": 63845.0 }, "refseq": { "ac": "XP_003130076", "name": "myb/SANT-like DNA-binding domain-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130076" }, "gene_names": [ { "name": "MSANTD2", "type": "recommended", "evidence": [ { "id": "F1S797", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S797" } ] }, { "name": "MSANTD2", "type": "synonym", "evidence": [ { "id": "XP_003130076", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130076" } ] } ], "protein_names": [ { "name": "Myb/SANT DNA binding domain containing 2", "type": "synonym", "evidence": [ { "id": "F1S797", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S797/entry#names_and_taxonomy" } ] }, { "name": "myb/SANT-like DNA-binding domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003130076", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130076" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S797", "url": "https://www.uniprot.org/uniprotkb/F1S797" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSANTD2", "url": "https://www.uniprot.org/uniprotkb/F1S797", "locus": { "chromosome": "9", "start_pos": 51997151, "end_pos": 52028776, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015201", "url": "https://www.ensembl.org/id/ENSSSCG00000015201" } ] } } ], "crossref": [ { "id": "F1S797", "url": "https://alphafold.ebi.ac.uk/entry/F1S797", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015201", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015201", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523010", "url": "https://www.ncbi.nlm.nih.gov/gene/100523010", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523010", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S797", "url": "https://www.orthodb.org/?gene=F1S797", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46933:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46933:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13837", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13837", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003130076", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130076", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VHX5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R084", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R084", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R084-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R084-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S797", "url": "https://www.uniprot.org/uniprotkb/F1S797", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S797-1", "url": "https://www.uniprot.org/uniprotkb/F1S797-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPFSSARGFGSPHPRLSPRERSGRRGRARGERPRSAEGLRASAGAHTRQSAGEAGPRAAPESAAAGCADASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGGLSDGNPSLSDPSTPRGASPLGPGGAAGSGAAASGGLGLGLGGRSAASSSVSFSPGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKELESDGSTMEEYSQEDWGNHSQDLHGYPTDQELDEIPVTKRTLKIKQESSEEAQKRDIMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNIVQYLLPGGIPKSPGLYAIGYEECIERPPSPHLERHSLDPGKEGRVDLESLSAQASLQVETEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 591, "header": "tr|F1S797-1|F1S797_PIG Isoform 1 of Myb/SANT DNA binding domain containing 2 OS=Sus scrofa OX=9823 GN=MSANTD2 PE=4 SV=3 CANONICAL=F1S797-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VHX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX5/entry", "sequence": { "sequence": "MEEYSQEDWGNHSQDLHGYPTDQELDEIPVTKRTLKIKQESSEEAQKRDIMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNIVQYLLPGGIPKSPGLYAIGYEECIERPPSPHLERHSLDPGKEGRVDLESLSAQASLQVETEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 329, "header": "tr|A0A4X1VHX5-1|F1S797_PIG Computationally mapped isoform of Myb/SANT DNA binding domain containing 2 OS=Sus scrofa OX=9823 GN=MSANTD2 PE=4 SV=1 CANONICAL=F1S797-1" }, "locus": { "chromosome": "9", "start_pos": 52004804, "end_pos": 51997817, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086648.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086648.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069806.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069806.1" } ] } }, { "isoform_ac": "A0A5G2R084-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R084/entry", "sequence": { "sequence": "MPPPFSSARGFGSPHPRLSPRERSGRRGRARGERPRSAEGLRASAGAHTRQSAGEAGPRAAPESAAAGCADASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGGLSDGNPSLSDPSTPRGASPLGPGGAAGSGAAASGGLGLGLGGRSAASSSVSFSPGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKMKYLSQREH", "length": 263, "header": "tr|A0A5G2R084-1|A0A5G2R084_PIG Computationally mapped isoform of Myb/SANT DNA binding domain containing 2 OS=Sus scrofa OX=9823 GN=MSANTD2 PE=4 SV=2 CANONICAL=F1S797-1" }, "locus": { "chromosome": "9", "start_pos": 52028577, "end_pos": 52002831, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087590.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087590.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063920.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063920.2" } ] } }, { "isoform_ac": "F1S797-1", "url": "https://www.uniprot.org/uniprotkb/F1S797/entry", "sequence": { "sequence": "MPPPFSSARGFGSPHPRLSPRERSGRRGRARGERPRSAEGLRASAGAHTRQSAGEAGPRAAPESAAAGCADASLPGGAAAAAWKMAAPCGSELPANSPLKIPKMEVLSPASPGGLSDGNPSLSDPSTPRGASPLGPGGAAGSGAAASGGLGLGLGGRSAASSSVSFSPGGGGGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKELESDGSTMEEYSQEDWGNHSQDLHGYPTDQELDEIPVTKRTLKIKQESSEEAQKRDIMQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNIVQYLLPGGIPKSPGLYAIGYEECIERPPSPHLERHSLDPGKEGRVDLESLSAQASLQVETEPTRIIYCYLGIAEVRTLQQCLFLHFQANTKTFSKDWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN", "length": 591, "header": "tr|F1S797-1|F1S797_PIG Isoform 1 of Myb/SANT DNA binding domain containing 2 OS=Sus scrofa OX=9823 GN=MSANTD2 PE=4 SV=3 CANONICAL=F1S797-1" }, "locus": { "chromosome": "9", "start_pos": 52028577, "end_pos": 51997817, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016567.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016567.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016123.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016123.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VHX5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VHX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523010", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S797-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S797-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S797" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S797", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S797" }, { "id": "PF13837", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb/SANT-like DNA-binding", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 265, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 273, "end_pos": 275 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S7M3-1", "uniprot_ac": "F1S7M3", "uniprot_id": "F1S7M3_PIG", "mass": { "chemical_mass": 38470.0, "monoisotopic_mass": 38470.0 }, "refseq": { "ac": "XP_003123110", "name": "SH2 domain-containing adapter protein D", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123110" }, "gene_names": [ { "name": "SHD", "type": "recommended", "evidence": [ { "id": "F1S7M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M3" } ] }, { "name": "SHD", "type": "synonym", "evidence": [ { "id": "XP_003123110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123110" } ] } ], "protein_names": [ { "name": "SH2 domain-containing adapter protein D", "type": "recommended", "evidence": [ { "id": "F1S7M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M3/entry#names_and_taxonomy" } ] }, { "name": "SH2 domain-containing adapter protein D", "type": "synonym", "evidence": [ { "id": "XP_003123110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123110" } ] } ], "function": [ { "annotation": "May function as an adapter protein.", "evidence": [ { "database": "UniProtKB", "id": "F1S7M3", "url": "https://www.uniprot.org/uniprotkb/F1S7M3#function" }, { "database": "UniProtKB", "id": "ARBA00057390", "url": "https://www.uniprot.org/uniprotkb/ARBA00057390#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7M3", "url": "https://www.uniprot.org/uniprotkb/F1S7M3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SHD", "url": "https://www.uniprot.org/uniprotkb/F1S7M3", "locus": { "chromosome": "2", "start_pos": 74497351, "end_pos": 74504659, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013503", "url": "https://www.ensembl.org/id/ENSSSCG00000013503" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013503", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013503", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523303", "url": "https://www.ncbi.nlm.nih.gov/gene/100523303", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523303", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523303", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AKEFRRP", "url": "https://omabrowser.org/oma/group/AKEFRRP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S7M3", "url": "https://www.orthodb.org/?gene=F1S7M3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123110", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123110", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VS21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VS21-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7M3", "url": "https://www.uniprot.org/uniprotkb/F1S7M3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7M3-1", "url": "https://www.uniprot.org/uniprotkb/F1S7M3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDADSRLEPDSAGPGDSKGPGDAKYDSPKHRLIKVEAVDMARAKVLLGSACEESEVDAEYSDPFDAQPHPPPPDNGYMEPYDAQRIVSELPCRGVQLYDTPYEEQDQEPGDETPSGRKPRQSRLPQEDERPADEYDQPWEWKKDHISKAFAVQFDSPEWERTSGSAKELRRPPHRSPQPAERVDPALPLEKQPWFHGPLSRADAENLLSLCKEGSYLVRLSETSPQDCSLSLRSSQGFLHLKFARTRENQFVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVSQSP", "length": 340, "header": "tr|F1S7M3-1|F1S7M3_PIG Isoform 1 of SH2 domain-containing adapter protein D OS=Sus scrofa OX=9823 GN=SHD PE=4 SV=1 CANONICAL=F1S7M3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VS21-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS21/entry", "sequence": { "sequence": "MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDADSRLEPDSAGPGDSKGPGDAKYDSPKHRLIKVEAVDMARAKVLLGSACEESEVDAEYSDPFDAQPHPPPPDNGYMEPYDAQRIVSELPCRGVQLYDTPYEEQDQEPGDETPSGRKPRQSRLPQEDERPADEYDQPWEWKKDHISKAFAVQFDSPEWERTSGSAKELRRPPHRSPQPAERVDPALPLEKQPSSQGFLHLKFARTRENQFVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVSQSP", "length": 300, "header": "tr|A0A4X1VS21-1|F1S7M3_PIG Computationally mapped isoform of SH2 domain-containing adapter protein D OS=Sus scrofa OX=9823 GN=SHD PE=4 SV=1 CANONICAL=F1S7M3-1" }, "locus": { "chromosome": "2", "start_pos": 74503925, "end_pos": 74497577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090739.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090739.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063727.1" } ] } }, { "isoform_ac": "F1S7M3-1", "url": "https://www.uniprot.org/uniprotkb/F1S7M3/entry", "sequence": { "sequence": "MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDADSRLEPDSAGPGDSKGPGDAKYDSPKHRLIKVEAVDMARAKVLLGSACEESEVDAEYSDPFDAQPHPPPPDNGYMEPYDAQRIVSELPCRGVQLYDTPYEEQDQEPGDETPSGRKPRQSRLPQEDERPADEYDQPWEWKKDHISKAFAVQFDSPEWERTSGSAKELRRPPHRSPQPAERVDPALPLEKQPWFHGPLSRADAENLLSLCKEGSYLVRLSETSPQDCSLSLRSSQGFLHLKFARTRENQFVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVSQSP", "length": 340, "header": "tr|F1S7M3-1|F1S7M3_PIG Isoform 1 of SH2 domain-containing adapter protein D OS=Sus scrofa OX=9823 GN=SHD PE=4 SV=1 CANONICAL=F1S7M3-1" }, "locus": { "chromosome": "2", "start_pos": 74503925, "end_pos": 74497577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014750.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014750.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014352.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014352.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 22, "start_aa": "Thr", "end_pos": 22, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr22", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VS21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VS21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523303", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523303", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AE76-1", "protein_name": "Src homology 2 domain containing transforming protein D", "gene_name": "SHD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKWLREYLGRGARRSPPRPPQPDYSGGERRPPGTGSGTASPRHRLVRVGGPGRLEQGPNESEYSEPFEQNAAPEGSNEDPREAAGRPRHGGGQRVRGQRDPRLYDTPCEEWEKVGEGAGGGAARESRLPRDDERPADEYDQPWEWKKDHISRAFAVQFESPERSPSLSRQPPRPPRPPPGTRPLCPPSPGHVDTSLPLEKQAWYHGPIGRAGAETLLALCREGSFLVRDCETSPDDYSLSLRYAVGRPYGAGVARRAKGRPHPYRAHAAPRVPHSAPQEQPRLRAREADADAGAALRVGARGGRLPLRARRCAALHGASAARPRRPAPLPALPRGCAAPLSPTAPGIPPERSH", "length": 354 }, "evidence": [ { "id": "F1S7M3", "url": "https://omabrowser.org/oma/group/F1S7M3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BE26-1", "protein_name": "SH2 domain-containing adapter protein D", "gene_name": "SHD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDADSRLEPDSSGGPGDSKGPGDAKYDSPKHRLIKVEAVDIARAKVLLGSPGEESKVDTEYSDPFDAQPHPPPPDDGYMEPYDAQRVMSELPCRRVQLYDTPYEEQDQELGDGPPSGQKPRQSRLPQEDERPADEYDQPWEWKKDHISKAFAVQFDSPDWERTSGSAKELRRPPPRSPQPAERVDPTLPLEKQPWFHGLLSRADAENLLSLCKEGSYLVRLSESSPQDCSLSLRSSQGFLHLKFARTRENQFVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVSQTP", "length": 341 }, "evidence": [ { "id": "F1S7M3", "url": "https://omabrowser.org/oma/group/F1S7M3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R864-1", "protein_name": "SH2 domain-containing adapter protein D", "gene_name": "Shd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKWLRDYLNLGSRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDSNGRPESEITESSDPKYNSPRHRLIKVEAVNLARAKTLLGSLGEEPEADTEYSDPFDAQPQPPAPNNGYMEPYDARNISSEQPSRAVQLYDTPYEEQDMKPEDGGSSGQSRRPLEDERPADEYDQPWEWKKDHISRAFAVQFHGPDWERTPCSTKEPWRPQPAERVDTALALEKQPWFHGPLSRVEAENLLSLCKEGSYLVRLSETRAQDCILSLRSNQGSMHLKFAKTRENQVVLGQHSGPFPSVPELVLHYSARPLPVQGIEHLALLYPVTSSQSSQGPCTLAARPEKGQGDP", "length": 343 }, "evidence": [ { "id": "F1S7M3", "url": "https://omabrowser.org/oma/group/F1S7M3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O88834-1", "protein_name": "SH2 domain-containing adapter protein D", "gene_name": "Shd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKWLRDYLNLGSRRPPPQPPTPDYTESDILRAYREQKDLDFEDPYEDSNGRAEPEVTGSGDPKYNSPRHRLIKVEAADMARAKALLGSPGEEPEAETEYSDPFDAQPQPPAPNSGYMEPYDARSVSSEQPSRAVQLYDTPYEEQATKPEDGGSSGQSRRPLEDERPADEYDQPWEWKKDHISRAFAVQFDGPDWERTPCSTKEPWRPQPAERVDTALALEKQPWFHGPLSRAEAENLLSLCKEGSYLVRLSETRAQDCILSLRSNQGSMHLKFARTRENQVVLGQHSGPFPSIPELVLHYSARPLPVQGAEHLALLYPVTSSQSSQGPCTLAAKPERGQGDP", "length": 343 }, "evidence": [ { "id": "F1S7M3", "url": "https://omabrowser.org/oma/group/F1S7M3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96IW2-1", "protein_name": "SH2 domain-containing adapter protein D", "gene_name": "SHD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKWLRDYLSFGGRRPPPQPPTPDYTESDILRAYRAQKNLDFEDPYEDAESRLEPDPAGPGDSKNPGDAKYGSPKHRLIKVEAADMARAKALLGGPGEELEADTEYLDPFDAQPHPAPPDDGYMEPYDAQWVMSELPGRGVQLYDTPYEEQDPETADGPPSGQKPRQSRMPQEDERPADEYDQPWEWKKDHISRAFAVQFDSPEWERTPGSAKELRRPPPRSPQPAERVDPALPLEKQPWFHGPLNRADAESLLSLCKEGSYLVRLSETNPQDCSLSLRSSQGFLHLKFARTRENQVVLGQHSGPFPSVPELVLHYSSRPLPVQGAEHLALLYPVVTQTP", "length": 340 }, "evidence": [ { "id": "F1S7M3", "url": "https://omabrowser.org/oma/group/F1S7M3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "F1S7M3", "url": "https://www.uniprot.org/uniprotkb/F1S7M3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M3" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 240, "end_pos": 335, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R1G0-1", "uniprot_ac": "A0A5G2R1G0", "uniprot_id": "A0A5G2R1G0_PIG", "mass": { "chemical_mass": 22885.0, "monoisotopic_mass": 22885.0 }, "refseq": {}, "gene_names": [ { "name": "TSPAN31", "type": "recommended", "evidence": [ { "id": "A0A5G2R1G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0" } ] } ], "protein_names": [ { "name": "Tetraspanin-31", "type": "recommended", "evidence": [ { "id": "A0A5G2R1G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSPAN31", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0", "locus": { "chromosome": "5", "start_pos": 23038977, "end_pos": 23029306, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036731", "url": "https://www.ensembl.org/id/ENSSSCG00000036731" } ] } } ], "crossref": [ { "id": "A0A5G2R1G0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1G0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622365", "url": "https://www.ncbi.nlm.nih.gov/gene/100622365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622365", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622365", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R1G0", "url": "https://www.orthodb.org/?gene=A0A5G2R1G0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W5Q3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W5Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTRNELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL", "length": 210, "header": "tr|A0A5G2R1G0-1|A0A5G2R1G0_PIG Isoform 1 of Tetraspanin-31 OS=Sus scrofa OX=9823 GN=TSPAN31 PE=3 SV=1 CANONICAL=A0A5G2R1G0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W5Q3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5Q3/entry", "sequence": { "sequence": "MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLICKSRSPSCQMCGEKFLRHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL", "length": 126, "header": "tr|A0A4X1W5Q3-1|A0A5G2R1G0_PIG Computationally mapped isoform of Tetraspanin-31 OS=Sus scrofa OX=9823 GN=TSPAN31 PE=3 SV=1 CANONICAL=A0A5G2R1G0-1" }, "locus": { "chromosome": "5", "start_pos": 23038510, "end_pos": 23036434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088759.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088759.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063574.1" } ] } }, { "isoform_ac": "A0A5G2QU36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU36/entry", "sequence": { "sequence": "MQIDWHSNHRNSGLAPSLANAKAGVGRCRRKGLGLARLDLKRQKLSESKKTVPGPSPQVLGTTWVPKAGEMVCGGFACSKNALCALNVVYMTDIINASWRVMSNKTRNELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL", "length": 197, "header": "tr|A0A5G2QU36-1|A0A5G2R1G0_PIG Computationally mapped isoform of Tetraspanin-31 OS=Sus scrofa OX=9823 GN=TSPAN31 PE=3 SV=1 CANONICAL=A0A5G2R1G0-1" }, "locus": { "chromosome": "5", "start_pos": 23038510, "end_pos": 23036224, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067632.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067632.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067669.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067669.1" } ] } }, { "isoform_ac": "A0A5G2R1G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0/entry", "sequence": { "sequence": "MVCGGFACSKNALCALNVVYMLVGLLLIGVAAWAKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFGISCSCLAINLSKQTDIINASWRVMSNKTRNELERSFDCCGLFNLTTLDQQDYAFCTAICKSRSPSCQMCGEKFLRHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL", "length": 210, "header": "tr|A0A5G2R1G0-1|A0A5G2R1G0_PIG Isoform 1 of Tetraspanin-31 OS=Sus scrofa OX=9823 GN=TSPAN31 PE=3 SV=1 CANONICAL=A0A5G2R1G0-1" }, "locus": { "chromosome": "5", "start_pos": 23038510, "end_pos": 23036434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087674.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087674.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071016.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071016.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W5Q3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W5Q3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622365", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622365", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1G0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1G0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R1G0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 210, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R1G0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1G0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 109, "end_pos": 111 }, { "start_pos": 117, "end_pos": 119 }, { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S621-1", "uniprot_ac": "F1S621", "uniprot_id": "F1S621_PIG", "mass": { "chemical_mass": 55514.0, "monoisotopic_mass": 55514.0 }, "refseq": { "ac": "XP_003125907", "name": "monocarboxylate transporter 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125907" }, "gene_names": [ { "name": "SLC16A4", "type": "recommended", "evidence": [ { "id": "F1S621", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ] }, { "name": "SLC16A4", "type": "synonym", "evidence": [ { "id": "XP_003125907", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125907" } ] } ], "protein_names": [ { "name": "Solute carrier family 16 member 4", "type": "synonym", "evidence": [ { "id": "F1S621", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S621/entry#names_and_taxonomy" } ] }, { "name": "monocarboxylate transporter 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003125907", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125907" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC16A4", "url": "https://www.uniprot.org/uniprotkb/F1S621", "locus": { "chromosome": "4", "start_pos": 109763645, "end_pos": 109739094, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006808", "url": "https://www.ensembl.org/id/ENSSSCG00000006808" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006808", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006808", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512346", "url": "https://www.ncbi.nlm.nih.gov/gene/100512346", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512346", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512346", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQAFSVV", "url": "https://omabrowser.org/oma/group/YQAFSVV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S621", "url": "https://www.orthodb.org/?gene=F1S621", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125907", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125907", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AXY5", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7E7", "url": "https://www.uniprot.org/uniprotkb/A0A287B7E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7E7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6V4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S621-1", "url": "https://www.uniprot.org/uniprotkb/F1S621-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9J2", "url": "https://www.uniprot.org/uniprotkb/I3L9J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9J2-1", "url": "https://www.uniprot.org/uniprotkb/I3L9J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKREKVRRYTKPLDGGWGWMVVFHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIIYDIIGAKTASILGALLVTGGYLISSQATSIPFLCVTMGFLPGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGTLVLFGAIALHLVPSSMLLRPTDIKSKHDSDVKDKGSSLSPSGPEAAHGRETSCCSESQESTRGDSTMQKAGQPDARFTVSQNHNEEFNKGPNSNRLILRTNEENYEKEAISWRCKQKLFYISLLKNPFFYIFTWSLLLSQLAYFIPTFHLVARAKTLGIDMMDASYLVSIAGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAGWLHDYTQTYTGSFYLSGACYLLSSVSFFFVPLAEQWRNRKREDCNQVSA", "length": 499, "header": "tr|F1S621-1|F1S621_PIG Isoform 1 of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=2 CANONICAL=F1S621-1" }, "isoforms": [ { "isoform_ac": "A0A287AXY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXY5/entry", "sequence": { "sequence": "MLKREKVRRYTKPLDGGWGWMVVFHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIIYDIIGAKTASILGALLVTGGYLISSQATSIPFLCVTMGFLPGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAGWLHDYTQTYTGSFYLSGACYLLSSVSFFFVPLAEQWRNRKREDCNQVSA", "length": 326, "header": "tr|A0A287AXY5-1|A0A287AXY5_PIG Computationally mapped isoform of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=2 CANONICAL=F1S621-1" }, "locus": { "chromosome": "4", "start_pos": 109763446, "end_pos": 109740583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043274.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043274.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049003.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049003.2" } ] } }, { "isoform_ac": "A0A287B7E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7E7/entry", "sequence": { "sequence": "MGMDGCVSFLPGPLAAIIYDIIGAKTASILGALLVTGGYLISSQATSIPFLCVTMGFLPGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGTLVLFGAIALHLVPSSMLLRPTDIKSKHDSDVKDKGSSLSPSGPEAAHGRETSCCSESQESTRGDSTMQKAGQPDARFTVSQNHNEEFNKGPNSNRLILRTNEENYEKEAISWRCKQKLFYISLLKNPFFYIFTWSLLLSQLAYFIPTFHLVARAKTLGIDMMDASYLVSIAGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAGWLHDYTQTYTGSFYLSGACYLLSSVSFFFVPLAEQWRNRKREDCNQVSA", "length": 438, "header": "tr|A0A287B7E7-1|A0A287B7E7_PIG Computationally mapped isoform of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=2 CANONICAL=F1S621-1" }, "locus": { "chromosome": "4", "start_pos": 109763446, "end_pos": 109740633, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054542.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054542.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052026.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052026.2" } ] } }, { "isoform_ac": "A0A5G2Q6V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6V4/entry", "sequence": { "sequence": "MGMDGCVSFLPGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGTLVLFGAIALHLVPSSMLLRPTDIKSKHDSDVKDKGSSLSPSGPEAAHGRETSCCSESQESTRGDSTMQKAGQPDARFTVSQNHNEEFNKGPNSNRLILRTNEENYEKEAISWRCKQKLFYISLLKNPFFYIFTWSLLLSQLAYFIPTFHLVARAKTLGIDMMDASYLVSIAGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAETLPSLQAGYMIIPRHTLAPSTSRAHAIYSLQCPFSLCHWLSNGET", "length": 386, "header": "tr|A0A5G2Q6V4-1|F1S621_PIG Computationally mapped isoform of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=2 CANONICAL=F1S621-1" }, "locus": { "chromosome": "4", "start_pos": 109763414, "end_pos": 109740633, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085506.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085506.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059758.1" } ] } }, { "isoform_ac": "F1S621-1", "url": "https://www.uniprot.org/uniprotkb/F1S621/entry", "sequence": { "sequence": "MLKREKVRRYTKPLDGGWGWMVVFHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIIYDIIGAKTASILGALLVTGGYLISSQATSIPFLCVTMGFLPGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGTLVLFGAIALHLVPSSMLLRPTDIKSKHDSDVKDKGSSLSPSGPEAAHGRETSCCSESQESTRGDSTMQKAGQPDARFTVSQNHNEEFNKGPNSNRLILRTNEENYEKEAISWRCKQKLFYISLLKNPFFYIFTWSLLLSQLAYFIPTFHLVARAKTLGIDMMDASYLVSIAGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAGWLHDYTQTYTGSFYLSGACYLLSSVSFFFVPLAEQWRNRKREDCNQVSA", "length": 499, "header": "tr|F1S621-1|F1S621_PIG Isoform 1 of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=2 CANONICAL=F1S621-1" }, "locus": { "chromosome": "4", "start_pos": 109763446, "end_pos": 109740583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007456.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007456.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007260.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007260.2" } ] } }, { "isoform_ac": "I3L9J2-1", "url": "https://www.uniprot.org/uniprotkb/I3L9J2/entry", "sequence": { "sequence": "MLKREKVRRYTKPLDGGWGWMVVFHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGLGSAFLYQTATVVTTKYFKKRLAFATAIARSGMGLTFLLAPFTKVLLDRYDWTGTLVLFGAIALHLVPSSMLLRPTDIKSKHDSDVKDKGSSLSPSGPEAAHGRETSCCSESQESTRGDSTMQKAGQPDARFTVSQNHNEEFNKGPNSNRLILRTNEENYEKEAISWRCKQKLFYISLLKNPFFYIFTWSLLLSQLAYFIPTFHLVARAKTLGIDMMDASYLVSIAGIIESVGQLVSGWVADQNWIAKYHYHKSYLILCGIINLLAPLATTFPLLMTYTIFFAIFSGGYLALILPVLVDLSGNFMVHRFVGFASFFAGMAVLSGPPLAGWLHDYTQTYTGSFYLSGACYLLSSVSFFFVPLAEQWRNRKREDCNQVSA", "length": 451, "header": "tr|I3L9J2-1|I3L9J2_PIG Computationally mapped isoform of Solute carrier family 16 member 4 OS=Sus scrofa OX=9823 GN=SLC16A4 PE=4 SV=3 CANONICAL=F1S621-1" }, "locus": { "chromosome": "4", "start_pos": 109763446, "end_pos": 109740583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031828.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031828.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020704.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020704.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6V4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6V4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512346", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512346", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QW16-1", "protein_name": "Monocarboxylate transporter 5", "gene_name": "slc16a4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPKEQHSDGKTAKTPCSELKAKVMKKEKKKVVYREPPDGGWGWMVVLHCFLVNVLVMGTLKTFGIFFVALQDEFGGSSESISWIGSIMSSLRLSGGPLASVACAKLGNRVTSIVGALFVSAGFLFSIFATSVTYLYISMGLVVGLGFALLYQATSVVIVTYFRKRLATAYSIGRSGMGLTFALAPFTQLLLDQYAWQGALLILGGLMLNLVASGMLLRPINIRHPASPISNSTIHKTEKDPLKNNMNGNTPVANGTSKSDSSPPIHKDTLIIKNPVHEQNSLPHLDLKKPTQNGVNGTDSSQTKTSPEMNGVSPVDSLLENGRTENVPENSPKVLDFSLLKNPFFCIYTWSLVFSQLAYFIPYFHLSARARNLGIDPMDASFIISVAGITETVAQLASGWVTDRNLVHKYHYHKAYLILCGVVNLLSPLATSYILLMVYAVFFAIFCGGYMALLLPVLVDLVGADKLNNSMGFSMFFVGLGCLTGPPLAGFLYDYTQTYDCSFYLAGVCYLLSSISLFLEPLARRWQARKERLETLNQELMWSNGCFCPAPQRNGVV", "length": 558 }, "evidence": [ { "id": "F1S621", "url": "https://omabrowser.org/oma/group/F1S621/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O15374-1", "protein_name": "Probable monocarboxylate transporter 5", "gene_name": "SLC16A4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLKREGKVQPYTKTLDGGWGWMIVIHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFCAGPLVAIICDILGEKTTSILGAFVVTGGYLISSWATSIPFLCVTMGLLPGLGSAFLYQVAAVVTTKYFKKRLALSTAIARSGMGLTFLLAPFTKFLIDLYDWTGALILFGAIALNLVPSSMLLRPIHIKSENNSGIKDKGSSLSAHGPEAHATETHCHETEESTIKDSTTQKAGLPSKNLTVSQNQSEEFYNGPNRNRLLLKSDEESDKVISWSCKQLFDISLFRNPFFYIFTWSFLLSQLAYFIPTFHLVARAKTLGIDIMDASYLVSVAGILETVSQIISGWVADQNWIKKYHYHKSYLILCGITNLLAPLATTFPLLMTYTICFAIFAGGYLALILPVLVDLCRNSTVNRFLGLASFFAGMAVLSGPPIAGWLYDYTQTYNGSFYFSGICYLLSSVSFFFVPLAERWKNSLT", "length": 487 }, "evidence": [ { "id": "F1S621", "url": "https://omabrowser.org/oma/group/F1S621/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R0M8-1", "protein_name": "Probable monocarboxylate transporter 5", "gene_name": "Slc16a4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVKKEKTPSPYTKPLDGGWGWMVVLHFFLVNVFVMGMTKTFAIFFVVFQEEFEGTSEQIGWIGSIMSSLRFSAGPLAAIICDVLGEKATSILGTFLVSGGYVISSWATGIPFLCVTMGLLPGLGSAFLYQVAAVVITKYFKKRLGLSTAIARSGMGLTFLLAPFTKFLIDLYDWTGALILFGAIILNLVPSSMLLRPIHSQSNNNSDIENKGSILSATEPEASYKTETSKCKETQEPFIKDSTMKKSEQPTTTLTVLGNQSEEFSNRPHRNRPLLMSNGKSHKKKFVSWNCKQKLLDISLFRNPFFYIFTWSFLLSQLAYFIPTFHLVARAKTLGIDVMDASYLVSVAGITETVSQLISGWIADQNWIKKYQYHKSYLILCGVTNLLAPLATTFPLLMAYTILFAIFAGGYLALILPVLVDLSKNSRVHKFLGYASFFAGIAVLSGPPIAGWIYDYTQTYTGSFYFSGTCYILSSVSLFFVPLAERWKRKQSDLLRTTIK", "length": 500 }, "evidence": [ { "id": "F1S621", "url": "https://omabrowser.org/oma/group/F1S621/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "pmid": "" }, { "name": "monocarboxylic acid transmembrane transporter activity", "id": "GO:0008028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008028", "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carboxylic acid transmembrane transport", "id": "GO:1905039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905039", "evidence": [ { "database": "UniProtKB", "id": "F1S621", "url": "https://www.uniprot.org/uniprotkb/F1S621" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S621", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S621" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 485, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S6I1-1", "uniprot_ac": "F1S6I1", "uniprot_id": "F1S6I1_PIG", "mass": { "chemical_mass": 83858.0, "monoisotopic_mass": 83858.0 }, "refseq": { "ac": "XP_020952290", "name": "protein zyg-11 homolog B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952290" }, "gene_names": [ { "name": "ZYG11B", "type": "recommended", "evidence": [ { "id": "F1S6I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" } ] }, { "name": "ZYG11B", "type": "synonym", "evidence": [ { "id": "XP_020952290", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952290" } ] } ], "protein_names": [ { "name": "Zyg-11 family member B, cell cycle regulator", "type": "synonym", "evidence": [ { "id": "F1S6I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6I1/entry#names_and_taxonomy" } ] }, { "name": "protein zyg-11 homolog B", "type": "synonym", "evidence": [ { "id": "XP_020952290", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952290" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S6I1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZYG11B", "url": "https://www.uniprot.org/uniprotkb/F1S6I1", "locus": { "chromosome": "6", "start_pos": 159407934, "end_pos": 159480586, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003857", "url": "https://www.ensembl.org/id/ENSSSCG00000003857" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003857", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003857", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739208", "url": "https://www.ncbi.nlm.nih.gov/gene/100739208", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739208", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739208", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QAWTLSH", "url": "https://omabrowser.org/oma/group/QAWTLSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S6I1", "url": "https://www.orthodb.org/?gene=F1S6I1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12904", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12904", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12904:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12904:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22964", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22964", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952290", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952290", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7R5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7R5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7R5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7R5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6I1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6I1-1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8S0", "url": "https://www.uniprot.org/uniprotkb/I3L8S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8S0-1", "url": "https://www.uniprot.org/uniprotkb/I3L8S0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEDQAGAAMEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQESGVFPQEVADRLLQTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 744, "header": "tr|F1S6I1-1|F1S6I1_PIG Isoform 1 of Zyg-11 family member B, cell cycle regulator OS=Sus scrofa OX=9823 GN=ZYG11B PE=1 SV=3 CANONICAL=F1S6I1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T0/entry", "sequence": { "sequence": "FVGDQEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQESGVFPQEVADRLLQTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 739, "header": "tr|A0A5G2Q8T0-1|F1S6I1_PIG Computationally mapped isoform of Zyg-11 family member B, cell cycle regulator OS=Sus scrofa OX=9823 GN=ZYG11B PE=1 SV=1 CANONICAL=F1S6I1-1" }, "locus": { "chromosome": "6", "start_pos": 159455666, "end_pos": 159413079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088988.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088988.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060311.1" } ] } }, { "isoform_ac": "A0A5G2R7R5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7R5/entry", "sequence": { "sequence": "MSVVFSTFLEAKLLALCSFCFFLGSKEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQESGVFPQEVADRLLQTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 760, "header": "tr|A0A5G2R7R5-1|A0A5G2R7R5_PIG Computationally mapped isoform of Zyg-11 family member B, cell cycle regulator OS=Sus scrofa OX=9823 GN=ZYG11B PE=1 SV=2 CANONICAL=F1S6I1-1" }, "locus": { "chromosome": "6", "start_pos": 159455241, "end_pos": 159413079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067951.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067951.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066636.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066636.2" } ] } }, { "isoform_ac": "F1S6I1-1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1/entry", "sequence": { "sequence": "MPEDQAGAAMEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQESGVFPQEVADRLLQTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 744, "header": "tr|F1S6I1-1|F1S6I1_PIG Isoform 1 of Zyg-11 family member B, cell cycle regulator OS=Sus scrofa OX=9823 GN=ZYG11B PE=1 SV=3 CANONICAL=F1S6I1-1" }, "locus": { "chromosome": "6", "start_pos": 159480404, "end_pos": 159413079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004269.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004269.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004173.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004173.3" } ] } }, { "isoform_ac": "I3L8S0-1", "url": "https://www.uniprot.org/uniprotkb/I3L8S0/entry", "sequence": { "sequence": "MEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQESGVFPQEVADRLLQTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRQMRKTEAQRSLVTCSRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 751, "header": "tr|I3L8S0-1|I3L8S0_PIG Computationally mapped isoform of Zyg-11 family member B, cell cycle regulator OS=Sus scrofa OX=9823 GN=ZYG11B PE=1 SV=4 CANONICAL=F1S6I1-1" }, "locus": { "chromosome": "6", "start_pos": 159478909, "end_pos": 159413079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027130.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027130.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020431.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020431.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739208", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739208", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3UFS0-1", "protein_name": "Protein zyg-11 homolog B", "gene_name": "Zyg11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEDQAHAAMEEASPYSLLDICLSFLTTNLEKFCSARQDGTLCLQEPGVFPQEVADRLLQTIAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLMGKGHLKVSGEANETQIAEALRRYSERAFFVREALFHLFSLTHVMEKTKPDILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLALGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKEHEQTDPYVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 744 }, "evidence": [ { "id": "F1S6I1", "url": "https://omabrowser.org/oma/group/F1S6I1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0D3-1", "protein_name": "Protein zyg-11 homolog B", "gene_name": "ZYG11B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPEDQAGAAMEEASPYSLLDICLNFLTTHLEKFCSARQDGTLCLQEPGVFPQEVADRLLRTMAFHGLLNDGTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQCLVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDRLKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVTDKAVEAFIQQRPSMQFVGLLATDAGYSEFLTGEGHLKVSGEANETQIAEALKRYSERAFFVREALFHLFSLTHVMEKTKPEILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLAAGMPVRLLADVTHLLLKAMEHFPNHQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGTELFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKVLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDDLHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYNIKDHEHTDPHVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN", "length": 744 }, "evidence": [ { "id": "F1S6I1", "url": "https://omabrowser.org/oma/group/F1S6I1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Cul2-RING ubiquitin ligase complex", "id": "GO:0031462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "F1S6I1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "F1S6I1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" } ], "pmid": "" }, { "name": "protein quality control for misfolded or incompletely synthesized proteins", "id": "GO:0006515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006515", "evidence": [ { "database": "UniProtKB", "id": "F1S6I1", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 523, "end_pos": 525, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S6I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" }, { "id": "PF22964", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22964" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein zer-1 homolog-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 369, "end_pos": 723, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S6I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6I1" }, { "id": "PF25013", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zer-1-like leucine-rich repeats region", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 277, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 323, "end_pos": 325 }, { "start_pos": 389, "end_pos": 391 }, { "start_pos": 523, "end_pos": 525 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R113-1", "uniprot_ac": "A0A5G2R113", "uniprot_id": "A0A5G2R113_PIG", "mass": { "chemical_mass": 51123.0, "monoisotopic_mass": 51123.0 }, "refseq": {}, "gene_names": [ { "name": "DMKN", "type": "recommended", "evidence": [ { "id": "A0A5G2R113", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113" } ] } ], "protein_names": [ { "name": "Dermokine", "type": "synonym", "evidence": [ { "id": "A0A5G2R113", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R113", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DMKN", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113", "locus": { "chromosome": "6", "start_pos": 44942782, "end_pos": 44955105, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041481", "url": "https://www.ensembl.org/id/ENSSSCG00000041481" } ] } } ], "crossref": [ { "id": "A0A5G2R113", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R113", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041481", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041481", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR033541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR36881", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36881", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36881:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36881:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWW8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R113", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R113-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRU9", "url": "https://www.uniprot.org/uniprotkb/I3LRU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRU9-1", "url": "https://www.uniprot.org/uniprotkb/I3LRU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLQRSLACLLLALCLGGGEAGPLLNGRESPGAGAGEAIGHKVGEAVGRGVGDAISHGIGEATGQAAGGPAGSGVREAPVPGVGDALAHGAKEAAHALGHTGAEAGRQAENIIRHGEDAAHHRVRGSHMLSAASLFLQGTHGQPLSGGHGISGSPSSPGGPGAPWDQVYSGGSGGSFGTNPQGGPWAHGGNGRPSNLGTNAQGAVAQPGYGSVQGSNNANEECTNPPPSGSGGSSSNSGGSSGSGGSSGGSSSGSSDSNSGGGSSGSNSGGSSGGNSGGSSSGSNSGGSSGGNSGGGSSGSNSGGSSGSNSGGGSSGSSSSSSGPNGAYNTGSSSGSTGGSGGRSKPGCDNPGTEIRGSGGSGGQGQGSRGGDEAANGINTLNSETPTSPGLFNFDNFWKKFKSKLGFINWDAIDKGQVLPPSTRALLYFSRLWEDFKHKTPFLNWKEITEGADASSSSSSLQKRAGGAGQPGAGWQDVAAVTSKNNYNHQAYPTPFGGQYPAKIPAKGGATLSSSASRAKPGLLQWVKFW", "length": 531, "header": "tr|A0A5G2R113-1|A0A5G2R113_PIG Isoform 1 of Dermokine OS=Sus scrofa OX=9823 GN=DMKN PE=4 SV=1 CANONICAL=A0A5G2R113-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBB1/entry", "sequence": { "sequence": "MKLQRSLACLLLALCLGGGEAGPLLNGRESPGAGAGEAIGHKVGEAVGRGVGDAISHGIGEATGQAAGGPAGSGVREAPVPGVGDALAHGAKEAAHALGHTGAEAGRQAENIIRHGEDAAHHRVRGSHMLSAASLFLQGTHGQPLSGGHGISGSPSSPGGPGAPWDQVYSGGSGGSFGTNPQGGPWAHGGNGRPSNLGTNAQGAVAQPGYGSVQGSNNANEECTNPPPSGSGGSSSNSGGSSGSGGSSGGSSSGSSDSNSGGGSSGSNSGGSSGGNSGGSSSGSNSGGSSGGNSGGGSSGSNSGGSSGSNSGGGSSGSSSSSSGPNGAYNTGSSSGSTGGSGGRSKPGCDNPGTEIRGSGGSGGQGQGSRGGDEAANGINTLNSETPTSPGLFNFDNFWKKFKSKLGFINWDAIDKGQVLPPSTRALLYFSRLWEDFKHKTPFLNWKEITEGADASSSSSSLQKRAGGAGQNNYNHQAYPTPFGGQYPAKIPAKGGATLSSSASRAKPGLLQWVKFW", "length": 517, "header": "tr|A0A5G2QBB1-1|A0A5G2R113_PIG Computationally mapped isoform of Dermokine OS=Sus scrofa OX=9823 GN=DMKN PE=4 SV=2 CANONICAL=A0A5G2R113-1" }, "locus": { "chromosome": "6", "start_pos": 44954906, "end_pos": 44942785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070930.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070930.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061334.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061334.2" } ] } }, { "isoform_ac": "A0A5G2QWW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWW8/entry", "sequence": { "sequence": "MKLQRSLACLLLALCLGGGEAGPLLNGRESPGAGAGEAIGHKVGEAVGRGVGDAISHGIGEATGQAAGGPAGSGVREAPVPGVGDALAHGAKEAAHALGHTGAEAGRQAENIIRHGEDAAHHRVRGSHMLSAASLFLQGTHGQPLSGGHGISGSPSSPGGPGAPWDQVYSGGSGGSFGTNPQGGPWAHGGNGRPSNLGTNAQGAVAQPGYGSVQGSNNANEECTNPPPSGSGGSSSNSGGSSGSGGSSGGSSSGSSDSNSGGGSSGSNSGGSSGGNSGGSSSGSNSGGSSGGNSGGGSSGSNSGGSSGSNSGGGSSGSSSSSSGPNGAYNTGSSSGSTGGSGGRSKPGCDNPGTEIRGSGGSGGQGQGSRGGDEAANGINTLNSETPTSPGLFNFDNFWKKFKSKLGFINWDAIDKDQRNFRFP", "length": 424, "header": "tr|A0A5G2QWW8-1|A0A5G2R113_PIG Computationally mapped isoform of Dermokine OS=Sus scrofa OX=9823 GN=DMKN PE=4 SV=2 CANONICAL=A0A5G2R113-1" }, "locus": { "chromosome": "6", "start_pos": 44954906, "end_pos": 44947411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088758.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088758.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068640.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068640.2" } ] } }, { "isoform_ac": "A0A5G2R113-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113/entry", "sequence": { "sequence": "MKLQRSLACLLLALCLGGGEAGPLLNGRESPGAGAGEAIGHKVGEAVGRGVGDAISHGIGEATGQAAGGPAGSGVREAPVPGVGDALAHGAKEAAHALGHTGAEAGRQAENIIRHGEDAAHHRVRGSHMLSAASLFLQGTHGQPLSGGHGISGSPSSPGGPGAPWDQVYSGGSGGSFGTNPQGGPWAHGGNGRPSNLGTNAQGAVAQPGYGSVQGSNNANEECTNPPPSGSGGSSSNSGGSSGSGGSSGGSSSGSSDSNSGGGSSGSNSGGSSGGNSGGSSSGSNSGGSSGGNSGGGSSGSNSGGSSGSNSGGGSSGSSSSSSGPNGAYNTGSSSGSTGGSGGRSKPGCDNPGTEIRGSGGSGGQGQGSRGGDEAANGINTLNSETPTSPGLFNFDNFWKKFKSKLGFINWDAIDKGQVLPPSTRALLYFSRLWEDFKHKTPFLNWKEITEGADASSSSSSLQKRAGGAGQPGAGWQDVAAVTSKNNYNHQAYPTPFGGQYPAKIPAKGGATLSSSASRAKPGLLQWVKFW", "length": 531, "header": "tr|A0A5G2R113-1|A0A5G2R113_PIG Isoform 1 of Dermokine OS=Sus scrofa OX=9823 GN=DMKN PE=4 SV=1 CANONICAL=A0A5G2R113-1" }, "locus": { "chromosome": "6", "start_pos": 44954906, "end_pos": 44942785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071299.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071299.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070060.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070060.1" } ] } }, { "isoform_ac": "I3LRU9-1", "url": "https://www.uniprot.org/uniprotkb/I3LRU9/entry", "sequence": { "sequence": "MKLQRSLACLLLALCLGGGEAGPLLNGRESPGAGAGEAIGHKVGEAVGRGVGDAISHGIGEATGQAAGGPAGSGVREAPVPGVGDALAHGAKEAAHALGHTGAEAGRQAENIIRHGEDAAHSSWQGASGGHSAWGTHGQPLSGGHGISGSPSSPGGPGAPWDQVYSGGSGGSFGTNPQGGPWAHGGNGRPSNLGTNAQGAVAQPGYGSVQGSNNANEECTNPPPSGSGGSSSNSGAYNTGSSSGSTGGSGGRSKPGCDNPGTEIRGSGGSGGQGQGSRGGDEAANGINTLNSETPTSPGLFNFDNFWKKFKSKLGFINWDAIDKGQVLPPSTRALLYFSRLWEDFKHKTPFLNWKEITEGADASSSSSSLQKRAGGAGQPGAGWQDVAAVTSKNNYNHQAYPTPFGGQYPAKIPAKGGATLSSSASRAKPGLLQWVKFW", "length": 439, "header": "tr|I3LRU9-1|I3LRU9_PIG Computationally mapped isoform of Dermokine OS=Sus scrofa OX=9823 GN=DMKN PE=4 SV=3 CANONICAL=A0A5G2R113-1" }, "locus": { "chromosome": "6", "start_pos": 44954906, "end_pos": 44942785, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028781.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028781.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026839.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026839.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cornified envelope assembly", "id": "GO:1903575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903575", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R113", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R113", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R113" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R113-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R113-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R113" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S6E1-1", "uniprot_ac": "F1S6E1", "uniprot_id": "F1S6E1_PIG", "mass": { "chemical_mass": 73251.0, "monoisotopic_mass": 73251.0 }, "refseq": {}, "gene_names": [ { "name": "SLC5A9", "type": "recommended", "evidence": [ { "id": "F1S6E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ] } ], "protein_names": [ { "name": "Sodium/mannose cotransporter SLC5A10", "type": "recommended", "evidence": [ { "id": "F1S6E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6E1/entry#names_and_taxonomy" } ] }, { "name": "Sodium/glucose cotransporter 5", "type": "synonym", "evidence": [ { "id": "F1S6E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6E1/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 5 member 10", "type": "synonym", "evidence": [ { "id": "F1S6E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S6E1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Electrogenic Na+-coupled sugar symporter that actively transports D-mannose or D-fructose at the plasma membrane, with a Na+ to sugar coupling ratio of 1:1. Transporter activity is driven by a transmembrane Na+ electrochemical gradient set by the Na+/K+ pump. Exclusively recognizes sugar substrates having a pyranose ring with an axial hydroxyl group on carbon 2. Has likely evolved to enable renal reabsorption of D-mannose, an important constituent of oligosaccharide chains of glycoproteins. Contributes to dietary D-fructose reabsorption from glomerular filtrate across the brush border of the kidney.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCF1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCF1#function" }, { "database": "UniProtKB", "id": "ARBA00045692", "url": "https://www.uniprot.org/uniprotkb/ARBA00045692#function" }, { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC5A9", "url": "https://www.uniprot.org/uniprotkb/F1S6E1", "locus": { "chromosome": "6", "start_pos": 163429433, "end_pos": 163447854, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003882", "url": "https://www.ensembl.org/id/ENSSSCG00000003882" } ] } } ], "crossref": [ { "id": "F1S6E1", "url": "https://alphafold.ebi.ac.uk/entry/F1S6E1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11819", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11819", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11819:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11819:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-189200", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189200", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "72907", "url": "https://www.rhea-db.org/rhea/72907", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "72915", "url": "https://www.rhea-db.org/rhea/72915", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QCF1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KSLELAAMGPGASGNSGSTATASHSALGSGVSLHAYDIAVLVVYFVFVIAVGVWSSIRASRGTVGGYFLAGRSMSWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNATWLLLALGWIFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLILYIFTKISTDLFSGALFIQMALGWNLYLSTAILLVVTAVYTITGGLMAVIYTDALQTVIMVGGALVLMFLGFQEVGWYPGLEQRYQQAIPNVTVPNTTCHLPRPDAFHMLRDPVNGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKVLPMFFIVMPGMISRALYPDEVGCVDPDVCQRICGARVGCSNIAYPRLVMGLMPVGLRGLMVAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRKKATEQELMVVGRVFVVLLAVISILWIPVIQRSNSGQLFIYIQSITSYLAPPITALFLLAIFCKRVTEPGAFWGLLFGLAVGVLRMVLEFCFPAPACGEADRRPAVLKDFHYLYFALLLCGLTALVIVAVSLCTPIPEEKLARLTWWTRHQPSLELEKEAQENTAGTAAVPSGEGPAEAGGAGDPSQGLEQLGAPRRSWGQLLWGWLCGLSGTPEQALSPAEQAALEQKLSSIEEQPLWRSVCDINAVLLLAVNIFLWGYFA", "length": 680, "header": "tr|F1S6E1-1|F1S6E1_PIG Isoform 1 of Sodium/mannose cotransporter SLC5A10 OS=Sus scrofa OX=9823 GN=SLC5A9 PE=3 SV=5 CANONICAL=F1S6E1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCF1/entry", "sequence": { "sequence": "KSLELAAMGPGASGNSGSTATASHSALGSGVSLHAYDIAVLVVYFVFVIAVGVWSSIRASRGTVGGYFLAGRSMSWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNTSKARPGGPHQRSRRTETSPLATWLLLALGWIFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLILYIFTKISTDLFSGALFIQMALGWNLYLSTAILLVVTAVYTITGGLMAVIYTDALQTVIMVGGALVLMFLGFQEVGWYPGLEQRYQQAIPNVTVPNTTCHLPRPDAFHMLRDPVNGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKVLPMFFIVMPGMISRALYPDEVGCVDPDVCQRICGARVGCSNIAYPRLVMGLMPVGLRGLMVAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRKKATEQELMVVGRVFVVLLAVISILWIPVIQRSNSGQLFIYIQSITSYLAPPITALFLLAIFCKRVTEPGAFWGLLFGLAVGVLRMVLEFCFPAPACGEADRRPAVLKDFHYLYFALLLCGLTALVIVAVSLCTPIPEEKLARLTWWTRHQPSLELEKEAQENTAGTAAVPSGEGPAEAGGAGDPSQGLEQLGAPRRSWGQLLWGWLCGLSGTPEQALSPAEQAALEQKLSSIEEQPLWRSVCDINAVLLLAVNIFLWGYFA", "length": 701, "header": "tr|A0A5G2QCF1-1|F1S6E1_PIG Computationally mapped isoform of Sodium/mannose cotransporter SLC5A10 OS=Sus scrofa OX=9823 GN=SLC5A9 PE=3 SV=2 CANONICAL=F1S6E1-1" }, "locus": { "chromosome": "6", "start_pos": 163447833, "end_pos": 163430755, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074102.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074102.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061780.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061780.2" } ] } }, { "isoform_ac": "F1S6E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1/entry", "sequence": { "sequence": "KSLELAAMGPGASGNSGSTATASHSALGSGVSLHAYDIAVLVVYFVFVIAVGVWSSIRASRGTVGGYFLAGRSMSWWPIGASLMSSNVGSGLFIGLAGTGAAGGLAVGGFEWNATWLLLALGWIFVPVYIAAGVVTMPQYLKKRFGGQRIQVYMSVLSLILYIFTKISTDLFSGALFIQMALGWNLYLSTAILLVVTAVYTITGGLMAVIYTDALQTVIMVGGALVLMFLGFQEVGWYPGLEQRYQQAIPNVTVPNTTCHLPRPDAFHMLRDPVNGDIPWPGLIFGLTVLATWCWCTDQVIVQRSLSAKSLSHAKGGSVLGGYLKVLPMFFIVMPGMISRALYPDEVGCVDPDVCQRICGARVGCSNIAYPRLVMGLMPVGLRGLMVAVIMAALMSSLTSIFNSSSTLFTIDVWQRFRKKATEQELMVVGRVFVVLLAVISILWIPVIQRSNSGQLFIYIQSITSYLAPPITALFLLAIFCKRVTEPGAFWGLLFGLAVGVLRMVLEFCFPAPACGEADRRPAVLKDFHYLYFALLLCGLTALVIVAVSLCTPIPEEKLARLTWWTRHQPSLELEKEAQENTAGTAAVPSGEGPAEAGGAGDPSQGLEQLGAPRRSWGQLLWGWLCGLSGTPEQALSPAEQAALEQKLSSIEEQPLWRSVCDINAVLLLAVNIFLWGYFA", "length": 680, "header": "tr|F1S6E1-1|F1S6E1_PIG Isoform 1 of Sodium/mannose cotransporter SLC5A10 OS=Sus scrofa OX=9823 GN=SLC5A9 PE=3 SV=5 CANONICAL=F1S6E1-1" }, "locus": { "chromosome": "6", "start_pos": 163447833, "end_pos": 163430755, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004294.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004294.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004195.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004195.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCF1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCF1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-189200", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189200", "resource": "Reactome", "description": "Cellular hexose transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "carbohydrate:monoatomic cation symporter activity", "id": "GO:0005402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005402", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" }, { "name": "hexose transmembrane transporter activity", "id": "GO:0015149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015149", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" }, { "name": "solute:sodium symporter activity", "id": "GO:0015370", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015370", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" }, { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S6E1", "url": "https://www.uniprot.org/uniprotkb/F1S6E1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "72907", "name": "", "equation": "D-mannose(out) + Na(+)(out) = D-mannose(in) + Na(+)(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "72907", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/72907" } ] }, { "id": "72915", "name": "", "equation": "D-fructopyranose(out) + Na(+)(out) = D-fructopyranose(in) + Na(+)(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "72915", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/72915" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S6E1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 680, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S6E1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S6E1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 251, "end_pos": 253 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 403, "end_pos": 405 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R1X5-1", "uniprot_ac": "A0A5G2R1X5", "uniprot_id": "A0A5G2R1X5_PIG", "mass": { "chemical_mass": 26321.0, "monoisotopic_mass": 26321.0 }, "refseq": {}, "gene_names": [ { "name": "FGF11", "type": "recommended", "evidence": [ { "id": "A0A5G2R1X5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ] } ], "protein_names": [ { "name": "Fibroblast growth factor", "type": "recommended", "evidence": [ { "id": "A0A5G2R1X5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5/entry#names_and_taxonomy" } ] }, { "name": "FGF", "type": "synonym", "evidence": [ { "id": "A0A5G2R1X5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGF11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5", "locus": { "chromosome": "12", "start_pos": 52748487, "end_pos": 52742131, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000051794", "url": "https://www.ensembl.org/id/ENSSSCG00000051794" } ] } } ], "crossref": [ { "id": "A0A5G2R1X5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1X5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051794", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051794", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23309", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23309", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11486", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11486", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QDK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QPLPLPPLPPRRLVQPPGPVLTSPDQGALRRHPHSFLGSGTPSWAWGEAPLAGYREGGAWNRSQRQPSPDRQDRTEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPEDTSSFTHFNLIPVGLRVVTIQSAKLGHYMAMNAEGLLYSSPHFTAECRFKECVFENYYVLYASALYRQRRSGRAWYLGLDKEGRVMKGNRVKKTKAAAHFVPKLLEVAMYREPSLHSVPETSPSSPPAP", "length": 236, "header": "tr|A0A5G2R1X5-1|A0A5G2R1X5_PIG Isoform 1 of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF11 PE=3 SV=2 CANONICAL=A0A5G2R1X5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK0/entry", "sequence": { "sequence": "MAMNAEGLLYSSPHFTAECRFKECVFENYYVLYASALYRQRRSGRAWYLGLDKEGRVMKGNRVKKTKAAAHFVPKLLEVAMYREPSLHSVPETSPSSPPAP", "length": 101, "header": "tr|A0A5G2QDK0-1|A0A5G2R1X5_PIG Computationally mapped isoform of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF11 PE=3 SV=2 CANONICAL=A0A5G2R1X5-1" }, "locus": { "chromosome": "12", "start_pos": 52746940, "end_pos": 52745724, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078649.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078649.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061701.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061701.2" } ] } }, { "isoform_ac": "A0A5G2R1X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5/entry", "sequence": { "sequence": "QPLPLPPLPPRRLVQPPGPVLTSPDQGALRRHPHSFLGSGTPSWAWGEAPLAGYREGGAWNRSQRQPSPDRQDRTEPQLKGIVTKLFCRQGFYLQANPDGSIQGTPEDTSSFTHFNLIPVGLRVVTIQSAKLGHYMAMNAEGLLYSSPHFTAECRFKECVFENYYVLYASALYRQRRSGRAWYLGLDKEGRVMKGNRVKKTKAAAHFVPKLLEVAMYREPSLHSVPETSPSSPPAP", "length": 236, "header": "tr|A0A5G2R1X5-1|A0A5G2R1X5_PIG Isoform 1 of Fibroblast growth factor OS=Sus scrofa OX=9823 GN=FGF11 PE=3 SV=2 CANONICAL=A0A5G2R1X5-1" }, "locus": { "chromosome": "12", "start_pos": 52746940, "end_pos": 52742145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078202.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078202.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070350.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070350.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "pmid": "" }, { "name": "sodium channel regulator activity", "id": "GO:0017080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017080", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1X5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1X5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R1X5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 236, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R1X5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1X5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9A4-1", "uniprot_ac": "F1S9A4", "uniprot_id": "F1S9A4_PIG", "mass": { "chemical_mass": 55927.0, "monoisotopic_mass": 55927.0 }, "refseq": {}, "gene_names": [ { "name": "NUCB2", "type": "recommended", "evidence": [ { "id": "F1S9A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ] } ], "protein_names": [ { "name": "EF-hand domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S9A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUCB2", "url": "https://www.uniprot.org/uniprotkb/F1S9A4", "locus": {} } ], "crossref": [ { "id": "F1S9A4", "url": "https://alphafold.ebi.ac.uk/entry/F1S9A4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013380", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013380", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QETDTNH", "url": "https://omabrowser.org/oma/group/QETDTNH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19237", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19237", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19237:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19237:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QE27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9A4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9A4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARRRERAVGRSAEQSRRLGAGEAGLCAANIQQAEPRAWFSRLRKAGGLEMKWRTILLQYWFFLVTYVFTALEAVPIDIDKTKVKNTQPVDSAKIEPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDELKRQEVARLRMLIKAKLDSLQDTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKREFLEPDSWETLDQQQFFTEEELKEYENLISVQETELKKKADELQKQKEELQRQHDQLEAQKLEYHQVVQQMEQKKLQAISPSALVENQRSSHTFEA", "length": 472, "header": "tr|F1S9A4-1|F1S9A4_PIG Isoform 1 of EF-hand domain-containing protein OS=Sus scrofa OX=9823 GN=NUCB2 PE=3 SV=2 CANONICAL=F1S9A4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBU4/entry", "sequence": { "sequence": "MKWRTILLQYWFFLVTYVFTALEAVPIDIDKTKVKNTQPVDSAKIEPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDELKRQEVARLRMLIKAKLDSLQDTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKETLDQQQFFTEEELKEYENLISVQETELKKKADELQKQKEELQRQHDQLEAQKLEYHQVVQQMEQKKLQAISPSALVENQRSSHTFEA", "length": 360, "header": "tr|A0A5G2QBU4-1|A0A5G2QBU4_PIG Computationally mapped isoform of EF-hand domain-containing protein OS=Sus scrofa OX=9823 GN=NUCB2 PE=1 SV=1 CANONICAL=F1S9A4-1" }, "locus": { "chromosome": "2", "start_pos": 41807626, "end_pos": 41782161, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066703.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066703.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060983.1" } ] } }, { "isoform_ac": "A0A5G2QE27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE27/entry", "sequence": { "sequence": "MVYCSWTVPIDIDKTKVKNTQPVDSAKIEPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDELKRQEVARLRMLIKFSYFLSDTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDRLVTLEEFLKATEKREFLEPDSWETLDQQQFFTEEELKEYENLISVQETELKKKADELQKQKEELQRQHDQLEAQKLEYHQVVFCKRLMALKKRFLGASVMAQ", "length": 339, "header": "tr|A0A5G2QE27-1|F1S9A4_PIG Computationally mapped isoform of EF-hand domain-containing protein OS=Sus scrofa OX=9823 GN=NUCB2 PE=3 SV=2 CANONICAL=F1S9A4-1" }, "locus": { "chromosome": "2", "start_pos": 41808482, "end_pos": 41783192, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082167.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082167.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062903.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062903.1" } ] } }, { "isoform_ac": "F1S9A4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9A4/entry", "sequence": { "sequence": "MAARRRERAVGRSAEQSRRLGAGEAGLCAANIQQAEPRAWFSRLRKAGGLEMKWRTILLQYWFFLVTYVFTALEAVPIDIDKTKVKNTQPVDSAKIEPPDTGLYYDEYLKQVIDVLETDNHFREKLQKADIEEIKSGRLSRELDLVSHHVRTKLDELKRQEVARLRMLIKAKLDSLQDTGIDHHALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKARHEEFKKYEMMKEHERREYLKTLTEEKRKEEESKFEEMKKKHGNHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNGDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKREFLEPDSWETLDQQQFFTEEELKEYENLISVQETELKKKADELQKQKEELQRQHDQLEAQKLEYHQVVQQMEQKKLQAISPSALVENQRSSHTFEA", "length": 472, "header": "tr|F1S9A4-1|F1S9A4_PIG Isoform 1 of EF-hand domain-containing protein OS=Sus scrofa OX=9823 GN=NUCB2 PE=3 SV=2 CANONICAL=F1S9A4-1" }, "locus": { "chromosome": "2", "start_pos": 41829837, "end_pos": 41782161, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081053.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081053.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071117.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071117.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QE27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QE27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZSC8-1", "protein_name": "Nucleobindin 2", "gene_name": "NUCB2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKWQSLLPQQCILLIPCLLMALEAVPIDIDKTKVKGEGHVEGEKIENPDTGLYYDEYLRQVIDVLETDKHFREKLQTADIEEIKSGKLSRELDLVSHHVRTRLDELKRQEVARLRMLIKAKMDSVQDTGIDHQALLKQFEHLNHQNPDTFEPKDLDMLIKAATSDLENYDKTRHEEFKKYEMMKEHERREYLKTLDEEKRQREESKFEEMKKKHGDHPKVHHPGSKDQLKEVWEEADGLDPNEFDPKTFFKLHDVNNDRFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDINKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEDELKEFESHISQQEDELRKKAEELQKQKEELQRQHDQLQAQKQELQQEAEVCFHNFLLRELDIVTAATRVTSFPSAESWL", "length": 424 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9U1W7-1", "protein_name": "Nucleobindin 2", "gene_name": "NUCB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKWRTILPQCCLLLVTCALPALESVPIDIDKTKVKTTQPVDSAKIEPPDTGLYYDEYLKQVIDVLETDSHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDELKRQEVARLRMLIKAKLDSFQDTGMDHHALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKARHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFAEMKKKHENHPKVNHPGSKDQLKEVWEEADGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLDEFLKATEKKEFLEPDSWETLDHQQFFTEEELKEYENLISVQESKLKKKADELQKQKEDLQRQHDQLEAQKLEYHQVVFCKMLVALKRILGSLLHASVLVL", "length": 416 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P80303-1", "protein_name": "Nucleobindin-2", "gene_name": "NUCB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRWRTILLQYCFLLITCLLTALEAVPIDIDKTKVQNIHPVESAKIEPPDTGLYYDEYLKQVIDVLETDKHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDELKRQEVGRLRMLIKAKLDSLQDIGMDHQALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESKFEEMKKKHENHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELKEYENIIALQENELKKKADELQKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKLQQGIPPSGPAGELKFEPHI", "length": 420 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P81117-1", "protein_name": "Nucleobindin-2", "gene_name": "Nucb2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRWRIIQVQYCFLLVPCMLTALEAVPIDVDKTKVHNTEPVENARIEPPDTGLYYDEYLKQVIEVLETDPHFREKLQKADIEEIRSGRLSQELDLVSHKVRTRLDELKRQEVGRLRMLIKAKLDALQDTGMNHHLLLKQFEHLNHQNPNTFESRDLDMLIKAATADLEQYDRTRHEEFKKYEMMKEHERREYLKTLSEEKRKEEESKFEEMKRKHEDHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTRELEKVYNPQNAEDDMIEMEEERLRMREHVMSEIDNNKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEDELKEYESIIAIQENELKKRAEELQKQKEDLQRQHDHLEAQKQEYHQAVQHLEQKKLQQGIAPSGPAGELKFEPHT", "length": 420 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JI85-1", "protein_name": "Nucleobindin-2", "gene_name": "Nucb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRWRTIQARYCFLLVPCVLTALEAVPIDVDKTKVHNVEPVESARIEPPDTGLYYDEYLKQVIEVLETDPHFREKLQKADIEEIRSGRLSQELDLVSHKVRTRLDELKRQEVGRLRMLIKAKLDALQDTGMNHHLLLKQFEHLNHQNPDTFESKDLDMLIKAATADLEQYDRTRHEEFKKYEMMKEHERREYLKTLSEEKRKEEEAKFAEMKRKHEDHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELDKVYNPQNAEDDMIEMEEERLRMREHVMNEIDNNKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEEELKEYESIIAIQESELKKKADELQKQKEELQRQHDHLEAQKQEYQQAVQQLEQKKFQQGIAPSGPAGELKFEPHT", "length": 420 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VVK7-1", "protein_name": "Nucleobindin", "gene_name": "NUCB1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVQNVALLGLALIAISASIVALPVTQNKKDHKEAAESSTPATADVETALEYERYLREVVEALEADPEFRKKLDKAPEADIRSGKIAQELDYVNHHVRTKLDEIKRREVERLRELANQAYELSNDIDRKHLKVSQHLDHDNEHTFEIEDLRKLIQKTSDDLAEADRKRRGEFKEYEMQKEFEREAQKKEMDEESRKKFETELKEKEEKHKDHEKLHHPGNKAQLEDVWEKQDHMDKNDFDPKTFFSIHDVDSNGYWDEAEVKALFVKELDKVYQSDLPEDDMRERAEEMERMREHYFQETDMNHDGLISIDEFMVQTNKEEFQKDPEWETIDRQQQYTHEEYLEYERRRQEEVQRLIAQGQLPPHPNMPQGYYAAPPPGGVAYQQAPPGAQLHYQHPDQVHAQQQQQYAQQQQQYAQQYQQQQYGNGQQPVQLQPNQVYQHAGQIPQQQQPVYQNQPVYQQQQPVYQQQQPVQQQQKPVQQPVQQQQQPVQQQQQPVQQQQQTVQQQQPVQQQQQTVQQQQPVQQQQQTAQQQPVAQQQIHNQSPPPVLNQQVPVQQQQKQHQESLNQQH", "length": 569 }, "evidence": [ { "id": "F1S9A4", "url": "https://omabrowser.org/oma/group/F1S9A4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1S9A4", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9A4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 472, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9A4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9A4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A4" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 292, "end_pos": 327, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R361-1", "uniprot_ac": "A0A5G2R361", "uniprot_id": "A0A5G2R361_PIG", "mass": { "chemical_mass": 42957.0, "monoisotopic_mass": 42957.0 }, "refseq": { "ac": "XP_001929289", "name": "beta-ureidopropionase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929289" }, "gene_names": [ { "name": "UPB1", "type": "recommended", "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ] }, { "name": "UPB1", "type": "synonym", "evidence": [ { "id": "XP_001929289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929289" } ] } ], "protein_names": [ { "name": "Beta-ureidopropionase", "type": "recommended", "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361/entry#names_and_taxonomy" } ] }, { "name": "3.5.1.6", "type": "synonym", "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361/entry#names_and_taxonomy" } ] }, { "name": "Beta-alanine synthase", "type": "synonym", "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361/entry#names_and_taxonomy" } ] }, { "name": "N-carbamoyl-beta-alanine amidohydrolase", "type": "synonym", "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361/entry#names_and_taxonomy" } ] }, { "name": "beta-ureidopropionase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929289" } ] } ], "function": [ { "annotation": "Catalyzes a late step in pyrimidine degradation. Converts N-carbamoyl-beta-alanine (3-ureidopropanoate) into beta-alanine, ammonia and carbon dioxide. Likewise, converts N-carbamoyl-beta-aminoisobutyrate (3-ureidoisobutyrate) into beta-aminoisobutyrate, ammonia and carbon dioxide.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361#function" }, { "database": "UniProtKB", "id": "ARBA00058206", "url": "https://www.uniprot.org/uniprotkb/ARBA00058206#function" }, { "database": "UniProtKB", "id": "A0A8W4F6M4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6M4#function" }, { "database": "UniProtKB", "id": "A0A5G2QEJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UPB1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361", "locus": { "chromosome": "14", "start_pos": 49565075, "end_pos": 49533231, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010060", "url": "https://www.ensembl.org/id/ENSSSCG00000010060" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010060", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010060", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07587", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07587", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155919", "url": "https://www.ncbi.nlm.nih.gov/gene/100155919", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155919", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155919", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HWPFLRD", "url": "https://omabrowser.org/oma/group/HWPFLRD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R361", "url": "https://www.orthodb.org/?gene=A0A5G2R361", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43674", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43674", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43674:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43674:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-73621", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73621", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929289", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QEJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R361-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6M4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6M4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6M4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL41", "url": "https://www.uniprot.org/uniprotkb/F1RL41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL41-1", "url": "https://www.uniprot.org/uniprotkb/F1RL41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFEAVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTGRYEMYAQELAEAVKPSYSPNIVKE", "length": 384, "header": "tr|A0A5G2R361-1|A0A5G2R361_PIG Isoform 1 of Beta-ureidopropionase OS=Sus scrofa OX=9823 GN=UPB1 PE=1 SV=1 CANONICAL=A0A5G2R361-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ4/entry", "sequence": { "sequence": "MELNLPRGAFEAATKGDFELLGCAFEAVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTGRYEMYAQELAEAVKPSYSPNIVKE", "length": 350, "header": "tr|A0A5G2QEJ4-1|A0A5G2R361_PIG Computationally mapped isoform of Beta-ureidopropionase OS=Sus scrofa OX=9823 GN=UPB1 PE=1 SV=1 CANONICAL=A0A5G2R361-1" }, "locus": { "chromosome": "14", "start_pos": 49561068, "end_pos": 49539465, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106432.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106432.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080342.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080342.1" } ] } }, { "isoform_ac": "A0A5G2R361-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361/entry", "sequence": { "sequence": "MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFEAVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTGRYEMYAQELAEAVKPSYSPNIVKE", "length": 384, "header": "tr|A0A5G2R361-1|A0A5G2R361_PIG Isoform 1 of Beta-ureidopropionase OS=Sus scrofa OX=9823 GN=UPB1 PE=1 SV=1 CANONICAL=A0A5G2R361-1" }, "locus": { "chromosome": "14", "start_pos": 49561068, "end_pos": 49533341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076475.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076475.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071530.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071530.1" } ] } }, { "isoform_ac": "A0A8W4F6M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6M4/entry", "sequence": { "sequence": "ELNLPRGAFEAATKGDFELLGCAFEAVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGEERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQTSDIWGFKMTGRYEMYAQELAEAVKPSYSPNIVKE", "length": 349, "header": "tr|A0A8W4F6M4-1|A0A8W4F6M4_PIG Computationally mapped isoform of Beta-ureidopropionase OS=Sus scrofa OX=9823 GN=UPB1 PE=1 SV=1 CANONICAL=A0A5G2R361-1" }, "locus": { "chromosome": "14", "start_pos": 49561068, "end_pos": 49539848, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105455.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105455.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074819.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074819.1" } ] } }, { "isoform_ac": "F1RL41-1", "url": "https://www.uniprot.org/uniprotkb/F1RL41/entry", "sequence": { "sequence": "MAGAEFESLEQCLEKHLPLADLREVKRILYGKETRELNLPRGAFEAATKGDFELLGCAFEAVEEQQRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRIAAIAEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGMVVVSPILERDVEHGDVLWNTAVVISNSGKVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVNICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGELTRTSATFMARATWQPLTAAAPPGSRVTGMGCWLLSSISTSAGRQVTSGASRWVPSLLLPEVGLSCSQHSWLQGQCISGAEGQSCVQGGNHRVQWCPASRPQ", "length": 393, "header": "tr|F1RL41-1|F1RL41_PIG Computationally mapped isoform of Beta-ureidopropionase 1 OS=Sus scrofa OX=9823 GN=UPB1 PE=1 SV=2 CANONICAL=A0A5G2R361-1" }, "locus": { "chromosome": "14", "start_pos": 49559652, "end_pos": 49533341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011021.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011021.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010733.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010733.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155919", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155919", "resource": "KEGG Pathway" }, { "id": "R-SSC-73621", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73621", "resource": "Reactome", "description": "Pyrimidine catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F841-1", "protein_name": "Beta-ureidopropionase", "gene_name": "Upb1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGPEWQSLEQCLEQHLPPDELGEVKRILYGKQTRKLDLPRKALETAAERNFELKGYAFEAAKEQRRCPQIVRVGLVQNRIPLPTSTPVAEQVSALHKRIESIVEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAEDGLTTRFCQKLAKRHNMVVVSPILERDRDHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGELSESLWPIEARNAAIANHCFTCAINRVGQEHYPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQINDFWTFKTLLHPASDLITPPGPRGSQSSGLGCVSHLASFNFTGIHEEVIMQLLVFIAV", "length": 408 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BU99-1", "protein_name": "Beta-ureidopropionase", "gene_name": "UPB1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGELESLELCLERYIPPQDLAEVKRILYGGETRKLSLPVAALSSAQERDFELQGYGFDAAPEQLRRPRIVRVGLVQNKIPLPTDTAVAVQVAALHRRIEEIVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGLTTKFCQELAKKYDMVVVSPILERDEIHGGTLWNTAVVISNSGAILGKSRKNHIPRVGDFNESTYYMEGNMGHPVFQTQFGTIAVNICFGRHHPLNWLMYSLNGAEIIFNPSATIGTLSESLWPIEARNAAIANHCFTCPINRVGTEYYKNAFTSGDGGKAHHDLGHFYGSSYVAAPDGSRTPGLSRTRDGLLVVEMDLNLCRQVSDKWNFKMTGRFEMYADKLAEAVQPCFTPNIIRE", "length": 383 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q03248-1", "protein_name": "Beta-ureidopropionase", "gene_name": "Upb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGPEWQSLEQCLEKHLPPDDLSQVKRILYGKQTRNLDLPRKALEAASERNFELKGYAFGAAKEQQRCPQIVRVGLVQNRIPLPTSAPVAEQVSALHKRIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAEDGLTTRFCQKLAKKHNMVVISPILERDRDHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSVNGAEIIFNPSATIGELSESMWPIEARNAAIANHCFTCALNRVGQEHYPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQINDFWTFKMTGRLEMYARELAEAVKPNYSPNIVKEDLVLAPSSG", "length": 393 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VC97-1", "protein_name": "Beta-ureidopropionase", "gene_name": "Upb1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGPEWQSLEQCLEKHLPPDDLAQVKRILYGKQTRNLDLPREALKAASERNFELKGYAFGAAKEQQRCPQIVRVGLVQNRIPLPTSAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAEDGLTTRFCQKLAKKHNMVVVSPILERDREHGGVLWNTAVVISNSGLVMGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGELSESLWPIEARNAAIANHCFTCALNRVGQEHFPNEFTSGDGKKAHHDLGYFYGSSYVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQINDFWTFKMTGRLEMYARELAEAVKPNYSPNIVKEDLVLAPSSG", "length": 393 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q964D8-1", "protein_name": "Beta-ureidopropionase", "gene_name": "pyd3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKQFESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEADPEQLRKPRIVRLGIIQNSIGAETTAPIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQETWHMPFAFCTREKYPWVEFAESASTGQSIKFIQRMARKYNMVIISPMLERDDVHASTIHNTAVVVGNNGNIIGKSRKNHIPRTGDFNESTYYMESTLGHPVFETIYGKIAINICYGRHHNLNWLAYGLNGAEIVFNPSATVGELSEPMWGVEARNAAMTNNYFVGSINRVGTEHFPNEFTSGNGKPAHKDFGHFYGSSYFSSPDNCCTPSLSRVSDGLNISEVDLNLCQQVKDKWNFQMTARYELYAKFLTDYINPNYQPNIIKDPSMK", "length": 391 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9UBR1-1", "protein_name": "Beta-ureidopropionase", "gene_name": "UPB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFEAAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELAEAVKSNYSPTIVKE", "length": 384 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VI04-1", "protein_name": "Beta-ureidopropionase", "gene_name": "pyd3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET", "length": 386 }, "evidence": [ { "id": "A0A5G2R361", "url": "https://omabrowser.org/oma/group/A0A5G2R361/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "small molecule metabolic process", "id": "GO:0044281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044281", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" }, { "name": "beta-alanine biosynthetic process via 3-ureidopropionate", "id": "GO:0033396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033396", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" }, { "name": "pyrimidine nucleoside catabolic process", "id": "GO:0046135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046135", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "beta-ureidopropionase activity", "id": "GO:0003837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003837", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R361", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-73591", "name": "conversion of 3-ureidopropionate to beta-alanine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-73588" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73591", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73591" } ] }, { "id": "R-SSC-73620", "name": "conversion of 3-Ureidoiosbutyrate to 3-Aminoisobutyrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-73617" ], "output_participant_list": [ "R-ALL-73619" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73620", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73620" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-73588", "participant_name": "UPROP [cytosol]", "crossref": [ { "id": "11892", "database": "ChEBI", "url": "" }, { "id": "ZINC000082071923", "database": "ZINC", "url": "" }, { "id": "C02642", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-73617", "participant_name": "UIBA [cytosol]", "crossref": [ { "id": "74414", "database": "ChEBI", "url": "" }, { "id": "ZINC000094437770", "database": "ZINC", "url": "" }, { "id": "ZINC000094437771", "database": "ZINC", "url": "" }, { "id": "C05100", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-73619", "participant_name": "3AIB [cytosol]", "crossref": [ { "id": "57731", "database": "ChEBI", "url": "" }, { "id": "C01205", "database": "COMPOUND", "url": "" }, { "id": "ZINC000000895587", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R361", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R361" }, { "id": "PS50263", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CN hydrolase", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 344, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 206, "end_pos": 208 }, { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0J5-1", "uniprot_ac": "A0A5G2R0J5", "uniprot_id": "A0A5G2R0J5_PIG", "mass": { "chemical_mass": 52110.0, "monoisotopic_mass": 52110.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Tripartite motif containing 77", "type": "recommended", "evidence": [ { "id": "A0A5G2R0J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0J5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0J5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN95", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSFFSSLRIMGSKSFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPHCPVCKEKSHQMNLKTNIVLMTQVFLARLTGPDDLLSPEEQTCETHMKPKNFYCEVTKDVLCLPCSKTKEHVAHLHCSIGWTAEEYRQKLLKQMRCLWVKIQQNERNLHRETSKIRNWEDYVTLRKTTIIAEYWNICQFIDQKEKRYLQRLDEESKEIFQQLQESQYNMDLMGNLLRGLYEELKDLCHKPDMQMIQSNCFLPGRSEKLQLHVPQPIVPQLSSWPIAGLMDWLHQFQGNVTRHVPVFEDLQRWLSGPDRPGVDNTPTRLKYFLAWGAESFTSGQHYWEVNMAGCCNWAIGLCNDSWAKKNDMALESEGIFLLFCIQENQQCSLFTSSPLTPQYVQRPLGQVGVFLDYEAGLVSFIDVATSSLICSFLSCSFSSALKAFLCSGHP", "length": 451, "header": "tr|A0A5G2R0J5-1|A0A5G2R0J5_PIG Isoform 1 of Tripartite motif containing 77 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0J5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC1/entry", "sequence": { "sequence": "MFSFFSSLRIMGSKSFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPHCPVCKEKSHQMNLKTNIVLMTQVFLARLTGPDDLLSPEEQTCETHMKPKNFYCEVTKDVLCLPCSKTKEHVAHLHCSIGWTAEEYRQKLLKQMRCLWVKIQQNERNLHRETSKIRNWEDYVTLRKTTIIAEYWNICQFIDQKEKRYLQRLDEESKEIFQQLQESQYNMDLMGNLLRGLYEELKDLCHKPDMQMIQSNCFLPGRSEKLQLHVPQPIVPQLSSWPIAGLMDWLHQFQGKRHLFNSHNRWLSGPDRPGVDNTPTRLKYFLAWGAESFTSGQHYWEVNMAGCCNWAIGLCNDSWAKKNDMALESEGIFLLFCIQENQQCSLFTSSPLTPQYVQRPLGQVGVFLDYEAGLVSFIDVATSSLICSFLSCSFSSALKAFLCSGHP", "length": 447, "header": "tr|A0A5G2QFC1-1|A0A5G2R0J5_PIG Computationally mapped isoform of Tripartite motif containing 77 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0J5-1" }, "locus": { "chromosome": "9", "start_pos": 22999141, "end_pos": 22993732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080363.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080363.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060738.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060738.1" } ] } }, { "isoform_ac": "A0A5G2QN95-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN95/entry", "sequence": { "sequence": "MFSFFSSLRIMGSKSFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPHCPVCKEKSHQMNLKTNIVLMTQVFLARLTGPDDLLSPEEQTCETHMKPKNFYCEVTKDVLCLPCSKTKEHVAHLHCSIGWTAEEYRQKLLKQMRCLWVKIQQNERNLHRETSKIRNWEVSRKLVSFSTSLGHVGIIQENRELKITFTVCSEWLQEQRLLSNHRWLSGPDRPGVDNTPTRLKYFLAWGAESFTSGQHYWEVNMAGCCNWAIGLCNDSWAKKNDMALESEGIFLLFCIQENQQCSLFTSSPLTPQYVQRPLGQVGVFLDYEAGLVSFIDVATSSLICSFLSCSFSSALKAFLCSGHP", "length": 364, "header": "tr|A0A5G2QN95-1|A0A5G2R0J5_PIG Computationally mapped isoform of Tripartite motif containing 77 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0J5-1" }, "locus": { "chromosome": "9", "start_pos": 22999141, "end_pos": 22993732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072011.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072011.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059786.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059786.1" } ] } }, { "isoform_ac": "A0A5G2R0J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5/entry", "sequence": { "sequence": "MFSFFSSLRIMGSKSFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPHCPVCKEKSHQMNLKTNIVLMTQVFLARLTGPDDLLSPEEQTCETHMKPKNFYCEVTKDVLCLPCSKTKEHVAHLHCSIGWTAEEYRQKLLKQMRCLWVKIQQNERNLHRETSKIRNWEDYVTLRKTTIIAEYWNICQFIDQKEKRYLQRLDEESKEIFQQLQESQYNMDLMGNLLRGLYEELKDLCHKPDMQMIQSNCFLPGRSEKLQLHVPQPIVPQLSSWPIAGLMDWLHQFQGNVTRHVPVFEDLQRWLSGPDRPGVDNTPTRLKYFLAWGAESFTSGQHYWEVNMAGCCNWAIGLCNDSWAKKNDMALESEGIFLLFCIQENQQCSLFTSSPLTPQYVQRPLGQVGVFLDYEAGLVSFIDVATSSLICSFLSCSFSSALKAFLCSGHP", "length": 451, "header": "tr|A0A5G2R0J5-1|A0A5G2R0J5_PIG Isoform 1 of Tripartite motif containing 77 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0J5-1" }, "locus": { "chromosome": "9", "start_pos": 22999141, "end_pos": 22993732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073301.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073301.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070675.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070675.1" } ] } }, { "isoform_ac": "A0A5G2RAC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAC1/entry", "sequence": { "sequence": "IFSALEIFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPHCPVCKEKSHQMNLKTNIVLMTQVFLARLTGPDDLLSPEEQTCETHMKPKNFYCEVTKDVLCLPCSKTKEHVAHLHCSIGWTAEEYRQKLLKQMRCLWVKIQQNERNLHRETSKIRNWEDYVTLRKTTIIAEYWNICQFIDQKEKRYLQRLDEESKEIFQQLQESQYNMDLMGNLLRGLYEELKDLCHKPDINCFLPGRSEKLQLHVPQPIVPQLSSWPIAGLMDWLHQFQGNVTRHVPVFEDLQRWLSGPDRPGVDNTPTRLKYFLAWGAESFTSGQHYWEVNMAGCCNWAIGLCNDSWAKKNDMALESEGIFLLFCIQENQQCSLFTSSPLTPQYVQRPLGQVGVFLDYEAGLVSFIDVATSSLICSFLSCSFSSALKAFLCSGHP", "length": 438, "header": "tr|A0A5G2RAC1-1|A0A5G2RAC1_PIG Computationally mapped isoform of Tripartite motif containing 77 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0J5-1" }, "locus": { "chromosome": "9", "start_pos": 23000062, "end_pos": 22993732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068684.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068684.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071080.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071080.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0J5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0J5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 451, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0J5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0J5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 137, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 451, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0J5" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 64, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 }, { "start_pos": 360, "end_pos": 362 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R1T5-1", "uniprot_ac": "A0A5G2R1T5", "uniprot_id": "A0A5G2R1T5_PIG", "mass": { "chemical_mass": 31706.0, "monoisotopic_mass": 31706.0 }, "refseq": {}, "gene_names": [ { "name": "UPK1A", "type": "recommended", "evidence": [ { "id": "A0A5G2R1T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ] } ], "protein_names": [ { "name": "Uroplakin-1a", "type": "recommended", "evidence": [ { "id": "A0A5G2R1T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5/entry#names_and_taxonomy" } ] }, { "name": "Uroplakin Ia", "type": "synonym", "evidence": [ { "id": "A0A5G2R1T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the asymmetric unit membrane (AUM); a highly specialized biomembrane elaborated by terminally differentiated urothelial cells. May play an important role in normal bladder epithelial physiology, possibly in regulating membrane permeability of superficial umbrella cells or in stabilizing the apical membrane through AUM/cytoskeletal interactions.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5#function" }, { "database": "UniProtKB", "id": "ARBA00049584", "url": "https://www.uniprot.org/uniprotkb/ARBA00049584#function" }, { "database": "UniProtKB", "id": "A0A5G2QG30", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG30#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UPK1A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5", "locus": { "chromosome": "6", "start_pos": 45114122, "end_pos": 45104021, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002901", "url": "https://www.ensembl.org/id/ENSSSCG00000002901" } ] } } ], "crossref": [ { "id": "A0A5G2R1T5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002901", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002901", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QG30", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG30-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVHGRGVFVTLVSCPPYRWGRGGSERGGHRLTGTHAAEAAAPAQASLTSCPVQLSGLALFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFVVASFGVGAALCRRRSMILTYLVLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSADSDQGRELTRLWDRVMIEQECCGTSGPMDWVNFTSAFRASTPEVVFPWPPLCCRRTGNFIPVNEEGCRLGHLDYLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTTL", "length": 284, "header": "tr|A0A5G2R1T5-1|A0A5G2R1T5_PIG Isoform 1 of Uroplakin-1a OS=Sus scrofa OX=9823 GN=UPK1A PE=3 SV=1 CANONICAL=A0A5G2R1T5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG30-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG30/entry", "sequence": { "sequence": "SPAGRILSGLALFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFVVASFGVGAALCRRRSMILTYLVLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSADSDQGRELTRLWDRVMIEQECCGTSGPMDWVNFTSAFRASTPEVVFPWPPLCCRRTGNFIPVNEEGCRLGHLDYLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTTL", "length": 236, "header": "tr|A0A5G2QG30-1|A0A5G2R1T5_PIG Computationally mapped isoform of Uroplakin-1a OS=Sus scrofa OX=9823 GN=UPK1A PE=3 SV=1 CANONICAL=A0A5G2R1T5-1" }, "locus": { "chromosome": "6", "start_pos": 45113628, "end_pos": 45106731, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084067.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084067.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063203.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063203.1" } ] } }, { "isoform_ac": "A0A5G2R1T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5/entry", "sequence": { "sequence": "MPVHGRGVFVTLVSCPPYRWGRGGSERGGHRLTGTHAAEAAAPAQASLTSCPVQLSGLALFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFVVASFGVGAALCRRRSMILTYLVLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSADSDQGRELTRLWDRVMIEQECCGTSGPMDWVNFTSAFRASTPEVVFPWPPLCCRRTGNFIPVNEEGCRLGHLDYLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTTL", "length": 284, "header": "tr|A0A5G2R1T5-1|A0A5G2R1T5_PIG Isoform 1 of Uroplakin-1a OS=Sus scrofa OX=9823 GN=UPK1A PE=3 SV=1 CANONICAL=A0A5G2R1T5-1" }, "locus": { "chromosome": "6", "start_pos": 45113628, "end_pos": 45106983, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068211.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068211.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070310.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070310.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG30", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ], "pmid": "" }, { "name": "apical plasma membrane urothelial plaque", "id": "GO:0120001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120001", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1T5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R1T5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R1T5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R1T5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 196, "end_pos": 198 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R4E7-1", "uniprot_ac": "A0A5G2R4E7", "uniprot_id": "A0A5G2R4E7_PIG", "mass": { "chemical_mass": 72325.0, "monoisotopic_mass": 72325.0 }, "refseq": {}, "gene_names": [ { "name": "MYB", "type": "recommended", "evidence": [ { "id": "A0A5G2R4E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ] } ], "protein_names": [ { "name": "Transcriptional activator Myb", "type": "recommended", "evidence": [ { "id": "A0A5G2R4E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.", "evidence": [ { "database": "UniProtKB", "id": "F1S3R6", "url": "https://www.uniprot.org/uniprotkb/F1S3R6#function" }, { "database": "UniProtKB", "id": "ARBA00093768", "url": "https://www.uniprot.org/uniprotkb/ARBA00093768#function" }, { "database": "UniProtKB", "id": "A0A5G2R1Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y9#function" }, { "database": "UniProtKB", "id": "A0A287AR90", "url": "https://www.uniprot.org/uniprotkb/A0A287AR90#function" }, { "database": "UniProtKB", "id": "A0A5G2QHC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHC4#function" }, { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7#function" }, { "database": "UniProtKB", "id": "A0A5G2RA25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA25#function" }, { "database": "UniProtKB", "id": "I3LQ62", "url": "https://www.uniprot.org/uniprotkb/I3LQ62#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7", "locus": { "chromosome": "1", "start_pos": 28819503, "end_pos": 28856999, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004167", "url": "https://www.ensembl.org/id/ENSSSCG00000004167" } ] } } ], "crossref": [ { "id": "A0A5G2R4E7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4E7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004167", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004167", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WEPATCG", "url": "https://omabrowser.org/oma/group/WEPATCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07988", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07988", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AR90", "url": "https://www.uniprot.org/uniprotkb/A0A287AR90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Y9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3R6", "url": "https://www.uniprot.org/uniprotkb/F1S3R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3R6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQ62", "url": "https://www.uniprot.org/uniprotkb/I3LQ62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQ62-1", "url": "https://www.uniprot.org/uniprotkb/I3LQ62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 640, "header": "tr|A0A5G2R4E7-1|A0A5G2R4E7_PIG Isoform 1 of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=2 CANONICAL=A0A5G2R4E7-1" }, "isoforms": [ { "isoform_ac": "A0A287AR90-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR90/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 605, "header": "tr|A0A287AR90-1|A0A287AR90_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=2 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048083.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048083.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046595.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046595.2" } ] } }, { "isoform_ac": "A0A5G2QHC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHC4/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 555, "header": "tr|A0A5G2QHC4-1|A0A5G2R4E7_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=1 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074992.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074992.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061413.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061413.1" } ] } }, { "isoform_ac": "A0A5G2R1Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y9/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSDASSWGDLSSFEFFEEADFSASQHHAGKALQLQHREGNVNRPAGEPSTRANKRKLSEGSLDPLKPLSPARPGTIPQVILRKKRGQAPLATGHSSCLIFADVSSSTPKRSPVKSLPFSPSQFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 760, "header": "tr|A0A5G2R1Y9-1|A0A5G2R1Y9_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=2 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076502.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076502.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068207.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068207.2" } ] } }, { "isoform_ac": "A0A5G2R4E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 640, "header": "tr|A0A5G2R4E7-1|A0A5G2R4E7_PIG Isoform 1 of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=2 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087733.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087733.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072083.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072083.2" } ] } }, { "isoform_ac": "A0A5G2RA25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA25/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREENRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPVRQSPGTCMGRGMWLDLAALLYLFPYLLNTTLNKTLYIH", "length": 331, "header": "tr|A0A5G2RA25-1|A0A5G2RA25_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=1 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28842982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077070.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077070.1" } ] } }, { "isoform_ac": "F1S3R6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3R6/entry", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQENILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 603, "header": "tr|F1S3R6-1|F1S3R6_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=3 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856025, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004606.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004606.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004503.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004503.4" } ] } }, { "isoform_ac": "I3LQ62-1", "url": "https://www.uniprot.org/uniprotkb/I3LQ62/entry", "sequence": { "sequence": "MCERIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPPVATSFQKNSHLMGFAHAPPSAQLPPTGQPSVNNDYSYYHISEAQNVSSPVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLEEHHSTPSLPVDPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSNNHENLDLEMPSLTSTPLSGHKLTVTTPFHRDQTVKTQKENTIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQETDESGIVAEFQENGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTQASPVADVPNILTSSVLMTPVSEDEDNVLKAFTVPKNRSLASPLQPCSGAWEAASCGKTDDQMTASGQARKYVNAFSTRTLVM", "length": 636, "header": "tr|I3LQ62-1|I3LQ62_PIG Computationally mapped isoform of Transcriptional activator Myb OS=Sus scrofa OX=9823 GN=MYB PE=4 SV=3 CANONICAL=A0A5G2R4E7-1" }, "locus": { "chromosome": "1", "start_pos": 28856938, "end_pos": 28820710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027213.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027213.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026240.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026240.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHC4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P0N4-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARRPRHSIYSSDDDEEDVEMYDHDYDGLLPKAGKRHLGKTRWTREEDEKLKKLVEQNGTEDWKVIASFLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKAGLPSATTGFQKSSHLMAFAHNPPAGPLPGAGQAPLGSDYPYYHIAEPQNVPGQIPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTANYPGWHSTTVADNTRTSGDNAPVSCLGEHHHCTPSPPVDHGCLPEESASPARCMIVHQSNILDNVKNLLEFAETLQLIDSDPSSWGDLSSFEFFEDTDILAGKATSGTAVQLQHGGASACRPPGLPISNLSKTMSSQSPPGSPKSLSASQGSVAPWVLRKRRGHASPLASGPSSTLGLADGSSSTSKHSPVKSLPFSPSQFLNTSSNHENLNLDNPALTSTPVCGHKMSVTTPFHRDQTFKTQKENHVFRTPAIKRSILESSPRTPTPFKNALAAQEIKYGPLKMLPQTPTHLVEDLQDVIKQESEESAIVAGLHESGPPLLKKIKQEVESPTDKAGNFFCSNHWEGENLNTQLFTHASTMEDVPNLLTSSILKMPVSEEEGSFHKAFAVPRNRPLASPLQHLNNAWESASCGKTEDQMALTDQARKYMAAFPTRTLVM", "length": 761 }, "evidence": [ { "id": "A0A5G2R4E7", "url": "https://omabrowser.org/oma/group/A0A5G2R4E7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QP24-1", "protein_name": "Transcriptional activator Myb", "gene_name": "myb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARRHRHSVYSSDEDDDDVEIYDHDYDGPHAKTGKRHLGKTRWTREEDEKLKRLVEHHGSEDWKVIASFLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDQIIYQAHEKLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQHAAKVSPTPLNNSYSKPHLLNYNHTPSNTSMPASSMSNQYPYYTESSRVPFPLALQLNILNFPQHGTAAIQRHYSDEDPEKEKRVKEIEMLLMSTENELKGQQALPISMNGYGGWNRGSLADSSVGIVVSVPAPSLEQGCLPEESAHGNTNSPNNDSSSTLPEFIDAIDSAPSVWANKHPKTECQTGQGSPANNGNRSAPTFLCSTPKYSSVRHLPFSPTQFFNASVSPDSDSQNIPVTPSPVCSQKALQQDLALRPQKENELFRTPNLRRSIMECSPRTPTPFKSTLTMQDSKYGPLKRVHSPSLDSGVVGTIKQEPQECEISVGGVHLDQPPLKKIKQEVESVCLQWEGQDLHTQLFPSNGPAHDMPDLLTSSVLMLPNTEKTEDGHKAAQLPRRPIGSPLQQLNTWEQVLCGKTEEQTIPSEATHKYLSNYSSRALVI", "length": 641 }, "evidence": [ { "id": "A0A5G2R4E7", "url": "https://omabrowser.org/oma/group/A0A5G2R4E7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P06876-1", "protein_name": "Transcriptional activator Myb", "gene_name": "Myb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDIEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVATSFQKNNHLMGFGHASPPSQLSPSGQSSVNSEYPYYHIAEAQNISSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQALPTQNHTCSYPGWHSTSIVDQTRPHGDSAPVSCLGEHHATPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSSNHESSGLDAPTLPSTPLIGHKLTPCRDQTVKTQKENSIFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHAVEDLQDVIKQESDESGIVAEFQESGPPLLKKIKQEVESPTEKSGNFFCSNHWAENSLSTQLFSQASPVADAPNILTSSVLMTPVSEDEDNVLKAFTVPKNRPLVGPLQPCSGAWEPASCGKTEDQMTASGPARKYVNAFSARTLVM", "length": 636 }, "evidence": [ { "id": "A0A5G2R4E7", "url": "https://omabrowser.org/oma/group/A0A5G2R4E7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P10242-1", "protein_name": "Transcriptional activator Myb", "gene_name": "MYB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARRPRHSIYSSDEDDEDFEMCDHDYDGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVATSFQKNSHLMGFAQAPPTAQLPATGQPTVNNDYSYYHISEAQNVSSHVPYPVALHVNIVNVPQPAAAAIQRHYNDEDPEKEKRIKELELLLMSTENELKGQQVLPTQNHTCSYPGWHSTTIADHTRPHGDSAPVSCLGEHHSTPSLPADPGSLPEESASPARCMIVHQGTILDNVKNLLEFAETLQFIDSFLNTSSNHENSDLEMPSLTSTPLIGHKLTVTTPFHRDQTVKTQKENTVFRTPAIKRSILESSPRTPTPFKHALAAQEIKYGPLKMLPQTPSHLVEDLQDVIKQESDESGIVAEFQENGPPLLKKIKQEVESPTDKSGNFFCSHHWEGDSLNTQLFTQTSPVADAPNILTSSVLMAPASEDEDNVLKAFTVPKNRSLASPLQPCSSTWEPASCGKMEEQMTSSSQARKYVNAFSARTLVM", "length": 640 }, "evidence": [ { "id": "A0A5G2R4E7", "url": "https://omabrowser.org/oma/group/A0A5G2R4E7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "WD40-repeat domain binding", "id": "GO:0071987", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071987", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "erythrocyte differentiation", "id": "GO:0030218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030218", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "negative regulation of megakaryocyte differentiation", "id": "GO:0045653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045653", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "T-helper 2 cell differentiation", "id": "GO:0045064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045064", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "positive regulation of miRNA transcription", "id": "GO:1902895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902895", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" }, { "name": "negative regulation of hematopoietic progenitor cell differentiation", "id": "GO:1901533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901533", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4E7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R4E7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 640, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R4E7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4E7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R4E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" }, { "id": "PS51294", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51294" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH myb-type", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 86, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R4E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4E7" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb-like", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 86, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 186, "end_pos": 188 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 404, "end_pos": 406 }, { "start_pos": 58, "end_pos": 60 }, { "start_pos": 594, "end_pos": 596 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S7L9-1", "uniprot_ac": "F1S7L9", "uniprot_id": "F1S7L9_PIG", "mass": { "chemical_mass": 53646.0, "monoisotopic_mass": 53646.0 }, "refseq": { "ac": "XP_013850219", "name": "MPN domain-containing protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850219" }, "gene_names": [ { "name": "MPND", "type": "recommended", "evidence": [ { "id": "F1S7L9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ] }, { "name": "MPND", "type": "synonym", "evidence": [ { "id": "XP_013850219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850219" } ] } ], "protein_names": [ { "name": "MPN domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S7L9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7L9/entry#names_and_taxonomy" } ] }, { "name": "MPN domain-containing protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013850219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850219" } ] } ], "function": [ { "annotation": "Probable protease. Acts as a sensor of N(6)-methyladenosine methylation on DNA (m6A): recognizes and binds m6A DNA, leading to its degradation. Binds only double strand DNA (dsDNA) in a sequence-independent manner.", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9#function" }, { "database": "UniProtKB", "id": "ARBA00093358", "url": "https://www.uniprot.org/uniprotkb/ARBA00093358#function" }, { "database": "UniProtKB", "id": "A0A287AV39", "url": "https://www.uniprot.org/uniprotkb/A0A287AV39#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MPND", "url": "https://www.uniprot.org/uniprotkb/F1S7L9", "locus": { "chromosome": "2", "start_pos": 74445662, "end_pos": 74455881, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013507", "url": "https://www.ensembl.org/id/ENSSSCG00000013507" } ] } } ], "crossref": [ { "id": "F1S7L9", "url": "https://alphafold.ebi.ac.uk/entry/F1S7L9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013507", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013507", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08067", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08067", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524132", "url": "https://www.ncbi.nlm.nih.gov/gene/100524132", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028090", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028090", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524132", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524132", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S7L9", "url": "https://www.orthodb.org/?gene=F1S7L9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10410", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10410", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013850219", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850219", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AV39", "url": "https://www.uniprot.org/uniprotkb/A0A287AV39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7L9-1", "url": "https://www.uniprot.org/uniprotkb/F1S7L9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPESLSPAGGAGEEAPDDDEDEAEAEDPERPGAVGGARSGGGGGAGAGSCGGPGSAFTRRAVTLRVLLKDGLLEPGSGVLSIYYLGKKFVGDLQPDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRNQFHVPAVAADESPASEGEEEELLMEDEEEEVLTGVSAEDKSRRPQAKGPSEPVHPEAIPPGKRVENKTRVPVRYCMLGNRDSARNPHTLVEVTSFAAINKFQPFNVAISSNVLFLLDFHSHLTRSQVVGYLGGRWDINSQMLTVLRAFPCRSRLGDAETAATVEEEIYQSLLLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGAPDLVRFQEPWNQEHTYLDKLKMSLASRTSKDQGLCHVLEQVYSILKQGS", "length": 490, "header": "tr|F1S7L9-1|F1S7L9_PIG Isoform 1 of MPN domain-containing protein OS=Sus scrofa OX=9823 GN=MPND PE=3 SV=3 CANONICAL=F1S7L9-1" }, "isoforms": [ { "isoform_ac": "A0A287AV39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV39/entry", "sequence": { "sequence": "MAAPESLSPAGGAGEEAPDDDEDEAEAEDPERPGAVGGARSGGGGGAGAGSCGGPGSAFTRRAVTLRVLLKDGLLEPGSGVLSIYYLGKKFVGDLQPDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRNQFHVPAVAADESPASEGEEEELLMEDEEEEVLTGVSAEDKSRRPQAKGPSEPVHPEAIPPGKRVENKTRVPVRYCMLGNRDSARNPHTLVEVTSFAAINKFQPFNVAISSNVLFLLDFHSHLTRSQVVGYLGGRWDINSQMLTVLRAFPCRSRLGDAETAATVEEEIYQSLLLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEMLLVEFYKGAPDLVRFQEPWNQEHTYLDKLKMSLASRTSKDQGLCHVLEQVYSILKQGS", "length": 460, "header": "tr|A0A287AV39-1|A0A287AV39_PIG Computationally mapped isoform of MPN domain-containing protein OS=Sus scrofa OX=9823 GN=MPND PE=3 SV=2 CANONICAL=F1S7L9-1" }, "locus": { "chromosome": "2", "start_pos": 74455830, "end_pos": 74445834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057652.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057652.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047976.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047976.2" } ] } }, { "isoform_ac": "A0A5G2QJ68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ68/entry", "sequence": { "sequence": "MAAPESLSPAGGAGEEAPDDDEDEAEAEDPERPGAVGGARSGGGGGAGAGSCGGPGSAFTRRAVTLRVLLKDGLLEPGSGVLSIYYLGKKFVGDLQPDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRNQFHVPAVAADESPASEGEEEELLMEDEEEEVLTGVSAEDKSRRPQAKGPSEPVHPEAIPPGKRVENKTRVPVRYCMLGNRDSARNPHTLVEVTSFAAINKFQPFNVAISSNVLFLLIYQSLLLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGAPDLVRFQEPWNQEHTYLDKLKMSLASRTSKDQGLCHVLEQVYSILKQGS", "length": 440, "header": "tr|A0A5G2QJ68-1|F1S7L9_PIG Computationally mapped isoform of MPN domain-containing protein OS=Sus scrofa OX=9823 GN=MPND PE=3 SV=1 CANONICAL=F1S7L9-1" }, "locus": { "chromosome": "2", "start_pos": 74455830, "end_pos": 74445834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070367.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070367.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063976.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063976.1" } ] } }, { "isoform_ac": "F1S7L9-1", "url": "https://www.uniprot.org/uniprotkb/F1S7L9/entry", "sequence": { "sequence": "MAAPESLSPAGGAGEEAPDDDEDEAEAEDPERPGAVGGARSGGGGGAGAGSCGGPGSAFTRRAVTLRVLLKDGLLEPGSGVLSIYYLGKKFVGDLQPDGRIVWQETGQVFNSPSAWATHCKKLVNPAKKSGCGWASVKYKGQKLDKYKAAWLRRNQFHVPAVAADESPASEGEEEELLMEDEEEEVLTGVSAEDKSRRPQAKGPSEPVHPEAIPPGKRVENKTRVPVRYCMLGNRDSARNPHTLVEVTSFAAINKFQPFNVAISSNVLFLLDFHSHLTRSQVVGYLGGRWDINSQMLTVLRAFPCRSRLGDAETAATVEEEIYQSLLLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPESKISPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGAPDLVRFQEPWNQEHTYLDKLKMSLASRTSKDQGLCHVLEQVYSILKQGS", "length": 490, "header": "tr|F1S7L9-1|F1S7L9_PIG Isoform 1 of MPN domain-containing protein OS=Sus scrofa OX=9823 GN=MPND PE=3 SV=3 CANONICAL=F1S7L9-1" }, "locus": { "chromosome": "2", "start_pos": 74455830, "end_pos": 74445834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014754.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014754.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014356.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014356.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524132", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524132", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" }, { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metallopeptidase activity", "id": "GO:0008237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008237", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" }, { "name": "polyubiquitin modification-dependent protein binding", "id": "GO:0031593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031593", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "BRISC complex", "id": "GO:0070552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070552", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" }, { "name": "BRCA1-A complex", "id": "GO:0070531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070531", "evidence": [ { "database": "UniProtKB", "id": "F1S7L9", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7L9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 490, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7L9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7L9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7L9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7L9" }, { "id": "PS50249", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MPN", "eco_id": "ECO_0000259", "start_pos": 261, "end_pos": 396, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 221, "end_pos": 223 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9H0-1", "uniprot_ac": "F1S9H0", "uniprot_id": "F1S9H0_PIG", "mass": { "chemical_mass": 34973.0, "monoisotopic_mass": 34973.0 }, "refseq": { "ac": "XP_003130561", "name": "axin interactor, dorsalization-associated protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130561" }, "gene_names": [ { "name": "AIDA", "type": "recommended", "evidence": [ { "id": "F1S9H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ] }, { "name": "AIDA", "type": "synonym", "evidence": [ { "id": "XP_003130561", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130561" } ] } ], "protein_names": [ { "name": "Axin interactor, dorsalization-associated protein", "type": "recommended", "evidence": [ { "id": "F1S9H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9H0/entry#names_and_taxonomy" } ] }, { "name": "Axin interaction partner and dorsalization antagonist", "type": "synonym", "evidence": [ { "id": "F1S9H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9H0/entry#names_and_taxonomy" } ] }, { "name": "axin interactor, dorsalization-associated protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003130561", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130561" } ] } ], "function": [ { "annotation": "Acts as a ventralizing factor during embryogenesis. Inhibits axin-mediated JNK activation by binding axin and disrupting axin homodimerization. This in turn antagonizes a Wnt/beta-catenin-independent dorsalization pathway activated by AXIN/JNK-signaling.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9E4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9E4#function" }, { "database": "UniProtKB", "id": "ARBA00059715", "url": "https://www.uniprot.org/uniprotkb/ARBA00059715#function" }, { "database": "UniProtKB", "id": "A0A5G2RBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBJ5#function" }, { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AIDA", "url": "https://www.uniprot.org/uniprotkb/F1S9H0", "locus": { "chromosome": "10", "start_pos": 11428399, "end_pos": 11466643, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010835", "url": "https://www.ensembl.org/id/ENSSSCG00000010835" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010835", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010835", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518326", "url": "https://www.ncbi.nlm.nih.gov/gene/100518326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518326", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518326", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KLHAAWC", "url": "https://omabrowser.org/oma/group/KLHAAWC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9H0", "url": "https://www.orthodb.org/?gene=F1S9H0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28654", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28654", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28654:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28654:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08910", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08910", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003130561", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130561", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QKV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9E4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9H0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9H0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 306, "header": "tr|F1S9H0-1|F1S9H0_PIG Isoform 1 of Axin interactor, dorsalization-associated protein OS=Sus scrofa OX=9823 GN=AIDA PE=1 SV=1 CANONICAL=F1S9H0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV5/entry", "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 224, "header": "tr|A0A5G2QKV5-1|F1S9H0_PIG Computationally mapped isoform of Axin interactor, dorsalization-associated protein OS=Sus scrofa OX=9823 GN=AIDA PE=1 SV=1 CANONICAL=F1S9H0-1" }, "locus": { "chromosome": "10", "start_pos": 11466634, "end_pos": 11432480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084096.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084096.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065464.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065464.1" } ] } }, { "isoform_ac": "A0A5G2R9E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9E4/entry", "sequence": { "sequence": "GPVLSSFHRLADPRSAASSLSCFFPLLRVAAPRLLWESLWNTRVRGLAPRTVPASSRGWDRRALLAADRGGVPRKQRGGRLARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 349, "header": "tr|A0A5G2R9E4-1|A0A5G2R9E4_PIG Computationally mapped isoform of Axin interactor, dorsalization-associated protein OS=Sus scrofa OX=9823 GN=AIDA PE=1 SV=1 CANONICAL=F1S9H0-1" }, "locus": { "chromosome": "10", "start_pos": 11466322, "end_pos": 11432480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085724.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085724.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070744.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070744.1" } ] } }, { "isoform_ac": "A0A5G2RBJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBJ5/entry", "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 288, "header": "tr|A0A5G2RBJ5-1|A0A5G2RBJ5_PIG Computationally mapped isoform of Axin interactor, dorsalization-associated protein OS=Sus scrofa OX=9823 GN=AIDA PE=1 SV=1 CANONICAL=F1S9H0-1" }, "locus": { "chromosome": "10", "start_pos": 11466634, "end_pos": 11432480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077116.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077116.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073710.1" } ] } }, { "isoform_ac": "F1S9H0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9H0/entry", "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEIEDDEDEGGAGAGAPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIRPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 306, "header": "tr|F1S9H0-1|F1S9H0_PIG Isoform 1 of Axin interactor, dorsalization-associated protein OS=Sus scrofa OX=9823 GN=AIDA PE=1 SV=1 CANONICAL=F1S9H0-1" }, "locus": { "chromosome": "10", "start_pos": 11466634, "end_pos": 11432480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011854.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011854.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011551.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011551.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518326", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BG08-1", "protein_name": "Axin interactor, dorsalization-associated protein", "gene_name": "AIDA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPSEPGMTLLTIKIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 306 }, "evidence": [ { "id": "F1S9H0", "url": "https://omabrowser.org/oma/group/F1S9H0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PBN2-1", "protein_name": "Axin interactor, dorsalization-associated protein", "gene_name": "aida", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDVNKTVQKWHASFKKGTDFDSWGQLVEAIDEYQILARQLQKEVQSSNSHDFTEEQKKTLGKFATCLEMRSAALQCTQSQEEFKLEDLKKLEPIIKNILTYNKDFPFDVQPVPLRKILAPGEEENLDVEEDLDAGTGAGSTPSFTSRLPGSLLPRLPSEPGMTLLTLTIEKIGLKDAGQCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLNLLTKKPLYLHLNQTLHKD", "length": 303 }, "evidence": [ { "id": "F1S9H0", "url": "https://omabrowser.org/oma/group/F1S9H0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C4Q6-1", "protein_name": "Axin interactor, dorsalization-associated protein", "gene_name": "Aida", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEVTRSLLQRWGASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPIPLRRILAPGEEENLEFEEDEEGGAGAGPPDSFSARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVERLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQSLHKE", "length": 305 }, "evidence": [ { "id": "F1S9H0", "url": "https://omabrowser.org/oma/group/F1S9H0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96BJ3-1", "protein_name": "Axin interactor, dorsalization-associated protein", "gene_name": "AIDA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPVPLRRILAPGEEENLEFEEDEEEGGAGAGSPDSFPARVPGTLLPRLPSEPGMTLLTIRIEKIGLKDAGQCIDPYITVSVKDLNGIDLTPVQDTPVASRKEDTYVHFNVDIELQKHVEKLTKGAAIFFEFKHYKPKKRFTSTKCFAFMEMDEIKPGPIVIELYKKPTDFKRKKLQLLTKKPLYLHLHQTLHKE", "length": 306 }, "evidence": [ { "id": "F1S9H0", "url": "https://omabrowser.org/oma/group/F1S9H0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of JNK cascade", "id": "GO:0046329", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046329", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" }, { "name": "determination of ventral identity", "id": "GO:0048264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048264", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" }, { "name": "negative regulation of protein-containing complex assembly", "id": "GO:0031333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031333", "evidence": [ { "database": "UniProtKB", "id": "F1S9H0", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9H0" }, { "id": "PS51911", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51911" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 Aida-type", "eco_id": "ECO_0000259", "start_pos": 157, "end_pos": 304, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZP2-1", "uniprot_ac": "A0A5G2QZP2", "uniprot_id": "A0A5G2QZP2_PIG", "mass": { "chemical_mass": 71535.0, "monoisotopic_mass": 71535.0 }, "refseq": {}, "gene_names": [ { "name": "CD300LG", "type": "recommended", "evidence": [ { "id": "A0A5G2QZP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ] } ], "protein_names": [ { "name": "CD300 molecule like family member g", "type": "synonym", "evidence": [ { "id": "A0A5G2QZP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD300LG", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZP2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023014", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023014", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05716", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05716", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ERKKYWC", "url": "https://omabrowser.org/oma/group/ERKKYWC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11860:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11860:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QPH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA03", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA03-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG36", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG36-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LVM3", "url": "https://www.uniprot.org/uniprotkb/I3LVM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LVM3-1", "url": "https://www.uniprot.org/uniprotkb/I3LVM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLN6", "url": "https://www.uniprot.org/uniprotkb/K7GLN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLN6-1", "url": "https://www.uniprot.org/uniprotkb/K7GLN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS37", "url": "https://www.uniprot.org/uniprotkb/K7GS37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS37-1", "url": "https://www.uniprot.org/uniprotkb/K7GS37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSG7", "url": "https://www.uniprot.org/uniprotkb/K7GSG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSG7-1", "url": "https://www.uniprot.org/uniprotkb/K7GSG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSSGKGTGHAGEGVGAGKKARGRGAGTERPPTERGAPWAATLRVHEGRVSAHPSRPPSPSRRSSGSVVGPPRGVLPGRAGISAPVREARGGRELRLPLAPPPRPLPAAAARAGVAEREEERHGEEGEGGAGRRGGGRSGGRPRRLAQPTLRGPRLHSPAWSFPPHTPRDLSVLPSSPGETPVYVPNPVNSQPLLRPQRLHIPTPAPCAGEGGWTLAKHRIRFCKHLLRALQVPGTVPGAGGSETSKAGILNLTDSSRGGGPVRRARATLCNNARCWERFIGARGPGGAEEAERRRRAGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPASPGLHLTVSTAKLGKTGAEASPSAGTFPSEHPATSPHAGASAFARTTPHPATSPHAGASAFARTTPHPATSPHAGASAFPRTTPHPATSPHAGASAFARTTPHSATSPHAGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEAQLTAETERKEKLQLSHSPLESSWVPEYTAINPAGPTGPPASPNTEIRCLSQASEEDGACLRDPEGDVTPGPPLPVSGEGPGLSEFISG", "length": 685, "header": "tr|A0A5G2QZP2-1|A0A5G2QZP2_PIG Isoform 1 of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=2 CANONICAL=A0A5G2QZP2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH0/entry", "sequence": { "sequence": "MRPLVLLWACLVLPGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEAQLTAETERKEKLQLSHSYQRTSELDLQGAFEVSRQAFLW", "length": 229, "header": "tr|A0A5G2QPH0-1|A0A5G2QZP2_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=1 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19283906, "end_pos": 19278055, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075241.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075241.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066595.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066595.1" } ] } }, { "isoform_ac": "A0A5G2QZP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2/entry", "sequence": { "sequence": "MRSSGKGTGHAGEGVGAGKKARGRGAGTERPPTERGAPWAATLRVHEGRVSAHPSRPPSPSRRSSGSVVGPPRGVLPGRAGISAPVREARGGRELRLPLAPPPRPLPAAAARAGVAEREEERHGEEGEGGAGRRGGGRSGGRPRRLAQPTLRGPRLHSPAWSFPPHTPRDLSVLPSSPGETPVYVPNPVNSQPLLRPQRLHIPTPAPCAGEGGWTLAKHRIRFCKHLLRALQVPGTVPGAGGSETSKAGILNLTDSSRGGGPVRRARATLCNNARCWERFIGARGPGGAEEAERRRRAGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPASPGLHLTVSTAKLGKTGAEASPSAGTFPSEHPATSPHAGASAFARTTPHPATSPHAGASAFARTTPHPATSPHAGASAFPRTTPHPATSPHAGASAFARTTPHSATSPHAGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEAQLTAETERKEKLQLSHSPLESSWVPEYTAINPAGPTGPPASPNTEIRCLSQASEEDGACLRDPEGDVTPGPPLPVSGEGPGLSEFISG", "length": 685, "header": "tr|A0A5G2QZP2-1|A0A5G2QZP2_PIG Isoform 1 of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=2 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19296771, "end_pos": 19273017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085779.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085779.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070351.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070351.2" } ] } }, { "isoform_ac": "A0A5G2RA03-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA03/entry", "sequence": { "sequence": "MRSSGKGTGHAGEGVGAGKKARGRGAGTERPPTERGAPWAATLRVHEGRVSAHPSRPPSPSRRSSGSVVGPPRGVLPGRAGISAPVREARGGRELRLPLAPPPRPLPAAAARAGVAEREEERHGEEGEGGAGRRGGGRSGGRPRRLAQPTLRGPRLHSPAWSFPPHTPRDLSVLPSSPGETPVYVPNPVNSQPLLRPQRLHIPTPAPCAGEGGWTLAKHRIRFCKHLLRALQVPGTVPGAGGSETSKAGILNLTDSSRGGGPVRRARATLCNNARCWERFIGARGPGGAEEAERRRRAGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPASPGLHLTVSTAKLGKTGAEASPSAGTFPSEHPATSPHAGASAFARTTPHPATSPHAGASAFARTTPHPATSPHAGASAFPRTTPHPATSPHAGASAFARTTPHSATSPHAGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEGERKMPACLLEQPSVHGVGRRTPEGWRPSLDRGWWSLAPPCVA", "length": 639, "header": "tr|A0A5G2RA03-1|A0A5G2RA03_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=2 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19296771, "end_pos": 19276076, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083764.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083764.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073144.2" } ] } }, { "isoform_ac": "A0A8W4FG36-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG36/entry", "sequence": { "sequence": "MRSSGKGTGHAGEGVGAGKKARGRGAGTERPPTERGAPWAATLRVHEGRVSAHPSRPPSPSRRSSGSVVGPPRGVLPGRAGISAPVREARGGRELRLPLAPPPRPLPAAAARAGVAEREEERHGEEGEGGAGRRGGGRSGGRPRRLAQPTLRGPRLHSPAWSFPPHTPRDLSVLPSSPGETPVYVPNPVNSQPLLRPQRLHIPTPAPCAGEGGWTLAKHRIRFCKHLLRALQVPGTVPGAGGSETSKAGILNLTDSSRGGGPVRRARATLCNNARCWERFIGARGPGGAEEAERRRRAGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPASPGLHLTVSTAKLGKTGAEASPSAGTFPSEHPATSPHAGASAFARTTPHPATSPHAGASAFARTTPHPATSPHAGASAFPRTTPHPATSPHAGASAFARTTPHSATSPHAGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEAQLTAETERKEKLQLSHSKMPACLLEQPSVHGVGRRTPEGWRPSLDRGWWSLAPPCVA", "length": 654, "header": "tr|A0A8W4FG36-1|A0A8W4FG36_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=1 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19296771, "end_pos": 19276076, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098593.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098593.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078389.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078389.1" } ] } }, { "isoform_ac": "I3LVM3-1", "url": "https://www.uniprot.org/uniprotkb/I3LVM3/entry", "sequence": { "sequence": "MVRTDPPGCVARGMVKTPCKGTGWEKCTEGKAEAPSGPALGRRGVTRAAPPLPSSSASPLEEVEAPRSAAVERSSQLPVCAPARPALTMRPLVLLWACLVLPGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEGERAALTGSVFQPLESSWVPEYTAINPAGPTGPPASPNTEIRCLSQASEEDGACLRDPEGDVTPGPPLPVSGEGPGLSEFISG", "length": 372, "header": "tr|I3LVM3-1|I3LVM3_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=3 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19284170, "end_pos": 19273017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024090.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024090.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028175.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028175.3" } ] } }, { "isoform_ac": "K7GLN6-1", "url": "https://www.uniprot.org/uniprotkb/K7GLN6/entry", "sequence": { "sequence": "MRSSGKGTGHAGEGVGAGKKARGRGAGTERPPTERGAPWAATLRVHEGRVSAHPSRPPSPSRRSSGSVVGPPRGVLPGRAGISAPVREARGGRELRLPLAPPPRPLPAAAARAGVAEREEERHGEEGEGGAGRRGGGRSGGRPRRLAQPTLRGPRLHSPAWSFPPHTPRDLSVLPSSPGETPVYVPNPVNSQPLLRPQRLHIPTPAPCAGEGGWTLAKHRIRFCKHLLRALQVPGTVPGAGGSETSKAGILNLTDSSRGGGPVRRARATLCNNARCWERFIGARGPGGAEEAERRRRAGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPASPGLHLTVSTAKLGKTGAEASPSAGTFPSEHPATSPHAGASAFARTTPHPATSPHAGASAFARTTPHPATSPHAGASAFPRTTPHPATSPHAGASAFARTTPHSATSPHAGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEGERAALTGSVFQPLESSWVPEYTAINPAGPTGPPASPNTEIRCLSQASEEDGACLRDPEGDVTPGPPLPVSGEGPGLSEFISG", "length": 679, "header": "tr|K7GLN6-1|K7GLN6_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=4 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19296771, "end_pos": 19273017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034457.4", "url": "https://www.ensembl.org/id/ENSSSCT00000034457.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028768.4", "url": "https://www.ensembl.org/id/ENSSSCP00000028768.4" } ] } }, { "isoform_ac": "K7GS37-1", "url": "https://www.uniprot.org/uniprotkb/K7GS37/entry", "sequence": { "sequence": "MRPLVLLWACLVLPGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEAQLTAETERKEKLQLSHSNTPLFSLSFPWL", "length": 219, "header": "tr|K7GS37-1|K7GS37_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=3 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19283906, "end_pos": 19276895, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033809.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033809.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030717.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030717.3" } ] } }, { "isoform_ac": "K7GSG7-1", "url": "https://www.uniprot.org/uniprotkb/K7GSG7/entry", "sequence": { "sequence": "MRPLVLLWACLVLPGYGTLVGPKEISGFVGDTVSLQCTYGEALKTHRKYWCRKIGYLIARCSGTVFSGEYGQEGRVSVHDSPWELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSVSLHVFPGTTPHPATSPPAGISRPTTQLDSTSAKDTSLVRRSSTAKSGTSIPMTRILAPVLVLLALLLATGLAALGSWVLQRRKEGWADPQPLETQLGSAFHLSLLSLQASEEDGACLRDPEGDVTPGPPLPVSGEGPGLSEFISG", "length": 262, "header": "tr|K7GSG7-1|K7GSG7_PIG Computationally mapped isoform of CD300 molecule like family member g OS=Sus scrofa OX=9823 GN=CD300LG PE=1 SV=2 CANONICAL=A0A5G2QZP2-1" }, "locus": { "chromosome": "12", "start_pos": 19283906, "end_pos": 19273017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035246.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035246.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030850.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030850.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 633, "start_aa": "Thr", "end_pos": 633, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr633", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [ { "uniprot_canonical_ac": "A5D7B2-1", "protein_name": "CMRF35-like molecule 9", "gene_name": "CD300LG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPLLMLWGCLVLPGYGSVVNPKEISGFEGDTVSLQCTYEEELKKHQKYWCREAGLFISRCTGTVFSGEYGQEGRVSVHDNPRENRFTVILRNLTLKDRGKYLCGVKRLGFDKTMSVSLLVFPGTSLHPATSPPAGISQPATQLDSTSTEDTSFVPSSSSKSRVSIPLIRILAPVLVLLALLLATGLAALGNYMFQRREKAQLASETQKKDKVHLSHLTSEDDEASWRDPKGDMTPASTLPMSGDEPGFSKFSSV", "length": 255 }, "evidence": [ { "id": "A0A5G2QZP2", "url": "https://omabrowser.org/oma/group/A0A5G2QZP2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R459-1", "protein_name": "Cd300 molecule-like family member G", "gene_name": "Cd300lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPLVLLWGCLVLPGYEALTGPKEISGFEGDTVSLRCTYKKEMKVHRKYWCRQGGILLSRCGDTVYTNQDQEVTRGKMSIRDSLQDLWVTVTMRDLTLKDSGKYWCGIDRLGRDESFEVKLIVFPGKRDSPVPTGTCCPSSPTPSFQPLTPTRRLQPKAKAWLTQLPELTSPGLHPTVVTTKQGKTRVKAPVFTEAAPAWSTGTSQVPSGISPHAGSSPHTATPARSAGTSQVPPGISPYAGRSPHTATSPHAGSSRPVIWPPLTTPKDSRAVTSSVSKSSVSIPMVRIMAPVLVLLSLLLAAGLIAIGSHMLRRQRKKSWLATETQKNEKVYLETSLPGNGWTSEDSMIDLAVPPECLRNPNPSAEKHNLSQSAEEEAAPSLDAEEDVVVAPPLHMSAEELAFSEFISV", "length": 410 }, "evidence": [ { "id": "A0A5G2QZP2", "url": "https://omabrowser.org/oma/group/A0A5G2QZP2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1ERP8-1", "protein_name": "CMRF35-like molecule 9", "gene_name": "Cd300lg", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPLVLLWGCLVLPGYEALKGPKEISGFEGDTVSLRCTYVEKMKEHRKYWCRQGGILVSRCGDIVYANQDQEVTRGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPGKRDNAVPAGTCCPSSPTPSFQPLTPTRSLQPKAKAWQTQLPEPRSSRPVVWLPLTTPQDSRAVASSVSKPSVSIPMVRMMAPVLILLSLLLAAGLIAFGSHMLRWRKKAWLATETQKNEKVYLETSLPGNGWTTEDSTIDLAVTPECLRNLNPSAVPSPETQNLSQSTEEEEAARSLDDDKEDVMAPPPLQMSAEELAFSEFISV", "length": 331 }, "evidence": [ { "id": "A0A5G2QZP2", "url": "https://omabrowser.org/oma/group/A0A5G2QZP2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UXG3-1", "protein_name": "CMRF35-like molecule 9", "gene_name": "CD300LG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLLVLLWGCLLLPGYEALEGPEEISGFEGDTVSLQCTYREELRDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGRVSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGPCCPPSPSPTFQPLATTRLQPKAKAQQTQPPGLTSPGLYPAATTAKQGKTGAEAPPLPGTSQYGHERTSQYTGTSPHPATSPPAGSSRPPMQLDSTSAEDTSPALSSGSSKPRVSIPMVRILAPVLVLLSLLSAAGLIAFCSHLLLWRKEAQQATETQRNEKFCLSRLTAEEKEAPSQAPEGDVISMPPLHTSEEELGFSKFVSA", "length": 332 }, "evidence": [ { "id": "A0A5G2QZP2", "url": "https://omabrowser.org/oma/group/A0A5G2QZP2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 685, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZP2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP2" }, { "id": "SM00409", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00409" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin", "eco_id": "ECO_0000259", "start_pos": 306, "end_pos": 406, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 633 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 252, "end_pos": 254 }, { "start_pos": 377, "end_pos": 379 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R4T0-1", "uniprot_ac": "A0A5G2R4T0", "uniprot_id": "A0A5G2R4T0_PIG", "mass": { "chemical_mass": 51504.0, "monoisotopic_mass": 51504.0 }, "refseq": { "ac": "XP_020947063", "name": "sorting and assembly machinery component 50 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947063" }, "gene_names": [ { "name": "SAMM50", "type": "recommended", "evidence": [ { "id": "A0A5G2R4T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ] }, { "name": "SAMM50", "type": "synonym", "evidence": [ { "id": "XP_020947063", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947063" } ] } ], "protein_names": [ { "name": "Sorting and assembly machinery component 50 homolog", "type": "recommended", "evidence": [ { "id": "A0A5G2R4T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0/entry#names_and_taxonomy" } ] }, { "name": "sorting and assembly machinery component 50 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020947063", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947063" } ] } ], "function": [ { "annotation": "Plays a crucial role in the maintenance of the structure of mitochondrial cristae and the proper assembly of the mitochondrial respiratory chain complexes. Required for the assembly of TOMM40 into the TOM complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9I6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9I6#function" }, { "database": "UniProtKB", "id": "ARBA00060259", "url": "https://www.uniprot.org/uniprotkb/ARBA00060259#function" }, { "database": "UniProtKB", "id": "A0A8W4F8V8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V8#function" }, { "database": "UniProtKB", "id": "A0A5G2QSG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG1#function" }, { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0#function" }, { "database": "UniProtKB", "id": "A0A8W4FEG0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEG0#function" }, { "database": "UniProtKB", "id": "A0A8W4FGY0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAMM50", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0", "locus": { "chromosome": "5", "start_pos": 5035895, "end_pos": 5071277, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028346", "url": "https://www.ensembl.org/id/ENSSSCG00000028346" } ] } } ], "crossref": [ { "id": "A0A5G2R4T0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4T0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028346", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028346", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626494", "url": "https://www.ncbi.nlm.nih.gov/gene/100626494", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12815", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12815", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12815:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12815:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947063", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947063", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A9I6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9I6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8V8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEG0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGY0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLW3", "url": "https://www.uniprot.org/uniprotkb/I3LLW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLW3-1", "url": "https://www.uniprot.org/uniprotkb/I3LLW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRFL", "length": 465, "header": "tr|A0A5G2R4T0-1|A0A5G2R4T0_PIG Isoform 1 of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=1 CANONICAL=A0A5G2R4T0-1" }, "isoforms": [ { "isoform_ac": "A0A287A9I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9I6/entry", "sequence": { "sequence": "MGTVHARVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRFL", "length": 432, "header": "tr|A0A287A9I6-1|A0A287A9I6_PIG Computationally mapped isoform of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=2 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5071114, "end_pos": 5036038, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050345.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050345.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040466.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040466.2" } ] } }, { "isoform_ac": "A0A5G2QSG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG1/entry", "sequence": { "sequence": "LNTSHLCRILEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDR", "length": 456, "header": "tr|A0A5G2QSG1-1|A0A5G2R4T0_PIG Computationally mapped isoform of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=1 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5066980, "end_pos": 5041729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070079.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070079.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064937.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064937.1" } ] } }, { "isoform_ac": "A0A5G2R4T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0/entry", "sequence": { "sequence": "MPRSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRFL", "length": 465, "header": "tr|A0A5G2R4T0-1|A0A5G2R4T0_PIG Isoform 1 of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=1 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5070937, "end_pos": 5036038, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090590.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090590.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069195.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069195.1" } ] } }, { "isoform_ac": "A0A8W4F8V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V8/entry", "sequence": { "sequence": "MEVPRLRVKLELLLLAYTTANSNRGSRLHLRPTPRQRRILNSLSEARDRTRVLMDPSQICFCCTTTGTLVLVFDIGYLSVTPPLFQSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDR", "length": 534, "header": "tr|A0A8W4F8V8-1|A0A8W4F8V8_PIG Computationally mapped isoform of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=1 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5066753, "end_pos": 5041729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100604.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100604.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075818.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075818.1" } ] } }, { "isoform_ac": "A0A8W4FEG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEG0/entry", "sequence": { "sequence": "MPPSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDR", "length": 451, "header": "tr|A0A8W4FEG0-1|A0A8W4FEG0_PIG Computationally mapped isoform of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=2 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5066877, "end_pos": 5041729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099696.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099696.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077642.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077642.1" } ] } }, { "isoform_ac": "A0A8W4FGY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY0/entry", "sequence": { "sequence": "MGTVHARSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDIIMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDR", "length": 455, "header": "tr|A0A8W4FGY0-1|A0A8W4FGY0_PIG Computationally mapped isoform of Sorting and assembly machinery component 50 homolog OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=1 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5071114, "end_pos": 5041729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105138.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105138.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078491.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078491.1" } ] } }, { "isoform_ac": "I3LLW3-1", "url": "https://www.uniprot.org/uniprotkb/I3LLW3/entry", "sequence": { "sequence": "MCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAGIRFL", "length": 406, "header": "tr|I3LLW3-1|I3LLW3_PIG Computationally mapped isoform of SAMM50 sorting and assembly machinery component OS=Sus scrofa OX=9823 GN=SAMM50 PE=1 SV=2 CANONICAL=A0A5G2R4T0-1" }, "locus": { "chromosome": "5", "start_pos": 5064185, "end_pos": 5036038, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027711.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027711.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025083.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025083.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "pmid": "" }, { "name": "SAM complex", "id": "GO:0001401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001401", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein insertion into mitochondrial outer membrane", "id": "GO:0045040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045040", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "pmid": "" }, { "name": "cristae formation", "id": "GO:0042407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042407", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "pmid": "" }, { "name": "protein import into mitochondrial matrix", "id": "GO:0030150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030150", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R4T0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 465, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R4T0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4T0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R4T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T0" }, { "id": "PS51779", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51779" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "POTRA", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 121, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 }, { "start_pos": 264, "end_pos": 266 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S8J2-1", "uniprot_ac": "F1S8J2", "uniprot_id": "F1S8J2_PIG", "mass": { "chemical_mass": 107522.0, "monoisotopic_mass": 107522.0 }, "refseq": {}, "gene_names": [ { "name": "RPGRIP1", "type": "recommended", "evidence": [ { "id": "F1S8J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ] } ], "protein_names": [ { "name": "RPGR interacting protein 1", "type": "synonym", "evidence": [ { "id": "F1S8J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8J2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPGRIP1", "url": "https://www.uniprot.org/uniprotkb/F1S8J2", "locus": { "chromosome": "7", "start_pos": 77813775, "end_pos": 77903928, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002129", "url": "https://www.ensembl.org/id/ENSSSCG00000002129" } ] } } ], "crossref": [ { "id": "F1S8J2", "url": "https://alphafold.ebi.ac.uk/entry/F1S8J2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002129", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002129", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR031139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14240:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14240:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18111", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18111", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QU15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8J2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TSHVPVDNTLKDVRDLDSIPLMVPASKGKNVKTQPPLSRMSREELEDSLFRLREEHMLVKELFWKQQDEIKRMRTALLRLTVAGRDLRAEVAAAAVEQLSEPVSQRRNPLWRQRPSKHQRPPLQGLQPQFQRIGPSAPRRTQPRFHVGRRQLHTAGAPGTEKPKRESGDRPSYTAPPTFKEHVTNEKARDEISSEPNELAHIITSNTMQVEEPPKSPEKLSSKDENFEQRSSLECAQKATELRASIKENIQLIQLKKLLHERTTSLAATKAQLTEVQAAYETLLQKNQGILGAAHDALLSQVNELRAELKEESKKAVSLKSQLEDVSILQITLKEFQERVEDLEKERKLLNDNYDKLLENMLDSSNQPPWSNELVEQLQQQVSQLQHQLDAELEEKREVLLQLSREKAQNKDLKLEVTNLLQKHKQEVENLQNKDAISQSPDRQSEPATHPGLFQETSQIEPCEPKNQDEKKLSQMLSELQVSHAETTLELEKTRDMLILQRKINVCYQEELDAMMTKADSENKDHEEKLERLNQLLDLKNKRINQLEGILRSLGLPISGDFNLLDPAGKPNGSVQVQLDWKSCYLPPESFPKAETQSEEDTKDSLETSDEEKDASFLPDQMIPVEIPIEAGQYQAKRKPPHVGERKERGHQVAGYSRRKHGKRTGIQGKNRMEYLSRNILNGNTLQQVNYTELKFSGLKISTDDGLKKQQKEEEMTSSHSAWVQKEALHHVNDKESREQASEVSEAQTTDSDEIVTPVSQKCPKAGSEKMCIEIVSLAFYPEAEVMCDENVKQVYVEYKFYDLPLSETETPVSLRKPRAGEEIHFHFSKVIDLDPLEQKDRRQFLFAMLTAQDPEQRRLKFTVVSDPMDEEKSECQEVGYAYLELWQIVESGRDILEQELDIVRPEDQATPIGRLKVSLQAAAALHAIYKEMTEDLFS", "length": 939, "header": "tr|F1S8J2-1|F1S8J2_PIG Isoform 1 of RPGR interacting protein 1 OS=Sus scrofa OX=9823 GN=RPGRIP1 PE=4 SV=4 CANONICAL=F1S8J2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU15-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU15/entry", "sequence": { "sequence": "MLKLCNKDVISPTFECPSDNLLPIFSMLDSSNQPPWSNELVEQLQQQVSQLQHQLDAELEEKREVLLQLSREKAQNKDLKLEVTNLLQKHKQEVENLQNKDAISQSPDRQSEPATHPGLFQETSQIEPCEPKNQDEKKLSQMLSELQVSHAETTLELEKTRDMLILQRKINVCYQEELDAMMTKADSENKDHEEKLERLNQLLDLKNKRINQLEGILRSLGLPISGDFNLLDPAGKPNGSVQVQLDWKSCYLPPESFPKAETQSEEDTKDSLETSDEEKDASFLPDQMIPVEIPIEAGQYQAKRKPPHVGERKERGHQVAGYSRRKHGKRTGIQGKNRMEYLSRNILNGNTLQQVNYTELKFSGLKISTDDGLKKQQKEEEMTSSHSAWVQKEALHHVNDKESREQASEVSEAQTTDSDEIVTPVSQKCPKAGSEKMCIEIVSLAFYPEAEVMCDENVKQVYVEYKFYDLPLSETETPVSLRKPRAGEEIHFHFSKVIDLDPLEQKDRRQFLFAMLTAQDPEQRRLKFTVVSDPMDEEKSECQEVGYAYLELWQIVESGRDILEQELDIVRPEDQATPIGRLKVSLQAAAALHAIYKEMTEDLFS", "length": 605, "header": "tr|A0A5G2QU15-1|F1S8J2_PIG Computationally mapped isoform of RPGR interacting protein 1 OS=Sus scrofa OX=9823 GN=RPGRIP1 PE=4 SV=1 CANONICAL=F1S8J2-1" }, "locus": { "chromosome": "7", "start_pos": 77871364, "end_pos": 77814779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069178.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069178.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068338.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068338.1" } ] } }, { "isoform_ac": "F1S8J2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8J2/entry", "sequence": { "sequence": "TSHVPVDNTLKDVRDLDSIPLMVPASKGKNVKTQPPLSRMSREELEDSLFRLREEHMLVKELFWKQQDEIKRMRTALLRLTVAGRDLRAEVAAAAVEQLSEPVSQRRNPLWRQRPSKHQRPPLQGLQPQFQRIGPSAPRRTQPRFHVGRRQLHTAGAPGTEKPKRESGDRPSYTAPPTFKEHVTNEKARDEISSEPNELAHIITSNTMQVEEPPKSPEKLSSKDENFEQRSSLECAQKATELRASIKENIQLIQLKKLLHERTTSLAATKAQLTEVQAAYETLLQKNQGILGAAHDALLSQVNELRAELKEESKKAVSLKSQLEDVSILQITLKEFQERVEDLEKERKLLNDNYDKLLENMLDSSNQPPWSNELVEQLQQQVSQLQHQLDAELEEKREVLLQLSREKAQNKDLKLEVTNLLQKHKQEVENLQNKDAISQSPDRQSEPATHPGLFQETSQIEPCEPKNQDEKKLSQMLSELQVSHAETTLELEKTRDMLILQRKINVCYQEELDAMMTKADSENKDHEEKLERLNQLLDLKNKRINQLEGILRSLGLPISGDFNLLDPAGKPNGSVQVQLDWKSCYLPPESFPKAETQSEEDTKDSLETSDEEKDASFLPDQMIPVEIPIEAGQYQAKRKPPHVGERKERGHQVAGYSRRKHGKRTGIQGKNRMEYLSRNILNGNTLQQVNYTELKFSGLKISTDDGLKKQQKEEEMTSSHSAWVQKEALHHVNDKESREQASEVSEAQTTDSDEIVTPVSQKCPKAGSEKMCIEIVSLAFYPEAEVMCDENVKQVYVEYKFYDLPLSETETPVSLRKPRAGEEIHFHFSKVIDLDPLEQKDRRQFLFAMLTAQDPEQRRLKFTVVSDPMDEEKSECQEVGYAYLELWQIVESGRDILEQELDIVRPEDQATPIGRLKVSLQAAAALHAIYKEMTEDLFS", "length": 939, "header": "tr|F1S8J2-1|F1S8J2_PIG Isoform 1 of RPGR interacting protein 1 OS=Sus scrofa OX=9823 GN=RPGRIP1 PE=4 SV=4 CANONICAL=F1S8J2-1" }, "locus": { "chromosome": "7", "start_pos": 77903928, "end_pos": 77814779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002382.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002382.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002328.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002328.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU15", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "retinal rod cell development", "id": "GO:0046548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046548", "evidence": [ { "database": "UniProtKB", "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ], "pmid": "" }, { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "photoreceptor connecting cilium", "id": "GO:0032391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032391", "evidence": [ { "database": "UniProtKB", "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ], "pmid": "" }, { "name": "ciliary tip", "id": "GO:0097542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097542", "evidence": [ { "database": "UniProtKB", "id": "F1S8J2", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 690, "end_pos": 692, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8J2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 939, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8J2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8J2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8J2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8J2" }, { "id": "PF18111", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18111" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RPGRIP1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 768, "end_pos": 932, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 572, "end_pos": 574 }, { "start_pos": 690, "end_pos": 692 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R3M2-1", "uniprot_ac": "A0A5G2R3M2", "uniprot_id": "A0A5G2R3M2_PIG", "mass": { "chemical_mass": 26007.0, "monoisotopic_mass": 26007.0 }, "refseq": { "ac": "XP_020948023", "name": "C-type lectin domain family 12 member B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948023" }, "gene_names": [ { "name": "LOC100520308", "type": "recommended", "evidence": [ { "id": "A0A5G2R3M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2" } ] }, { "name": "LOC100520308", "type": "synonym", "evidence": [ { "id": "XP_020948023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948023" } ] } ], "protein_names": [ { "name": "C-type lectin domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R3M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2/entry#names_and_taxonomy" } ] }, { "name": "C-type lectin domain family 12 member B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020948023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948023" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100520308", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2", "locus": {} } ], "crossref": [ { "id": "A0A5G2R3M2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R3M2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039880", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039880", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520308", "url": "https://www.ncbi.nlm.nih.gov/gene/100520308", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520308", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520308", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R3M2", "url": "https://www.orthodb.org/?gene=A0A5G2R3M2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47647", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47647", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47647:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47647:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020948023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZUN6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEVTYATLKFPNHSKTNEPQDSHSLKRTDNHDRPELELEDKAETGTGSVEATAKVAESRAMRGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTVEDVSNISMLTCLAPT", "length": 231, "header": "tr|A0A5G2R3M2-1|A0A5G2R3M2_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100520308 PE=4 SV=1 CANONICAL=A0A5G2R3M2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUN6/entry", "sequence": { "sequence": "MAEEVTYATLKFPNHSKTNEPQDSHSLKRTGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTVEDVSNISMLTCLAPT", "length": 197, "header": "tr|A0A286ZUN6-1|A0A286ZUN6_PIG Computationally mapped isoform of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100520308 PE=4 SV=1 CANONICAL=A0A5G2R3M2-1" }, "locus": { "chromosome": "5", "start_pos": 61965130, "end_pos": 61946647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063265.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063265.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035170.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035170.2" } ] } }, { "isoform_ac": "A0A5G2QUM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM4/entry", "sequence": { "sequence": "LVGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTVEDVSNISMLTCKWLMPTP", "length": 172, "header": "tr|A0A5G2QUM4-1|A0A5G2R3M2_PIG Computationally mapped isoform of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100520308 PE=4 SV=1 CANONICAL=A0A5G2R3M2-1" }, "locus": { "chromosome": "5", "start_pos": 61964116, "end_pos": 61953366, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086445.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086445.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068656.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068656.1" } ] } }, { "isoform_ac": "A0A5G2R3M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2/entry", "sequence": { "sequence": "MAEEVTYATLKFPNHSKTNEPQDSHSLKRTDNHDRPELELEDKAETGTGSVEATAKVAESRAMRGHSVPSKVWCTIAFISLSLKLVMLAGLGTLVLMNYYKLFSSNTTASDMQLVLTEQVERNTTLDVNVPKNVSGQGFYSCSKLWIWHGNCCYYFSTELKTSNTSNSDCEKNHFSLMNTDDSENWNRTQLFFRCLPSPVSWMDLNFTLDNTNQTVEDVSNISMLTCLAPT", "length": 231, "header": "tr|A0A5G2R3M2-1|A0A5G2R3M2_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100520308 PE=4 SV=1 CANONICAL=A0A5G2R3M2-1" }, "locus": { "chromosome": "5", "start_pos": 61965130, "end_pos": 61946647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076271.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076271.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071686.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071686.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520308", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520308", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor regulator activity", "id": "GO:0030545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030545", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3M2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3M2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R3M2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 231, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R3M2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R3M2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 123, "end_pos": 125 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 14, "end_pos": 16 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 221, "end_pos": 223 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZZ8-1", "uniprot_ac": "A0A5G2QZZ8", "uniprot_id": "A0A5G2QZZ8_PIG", "mass": { "chemical_mass": 39413.0, "monoisotopic_mass": 39413.0 }, "refseq": {}, "gene_names": [ { "name": "MACROD1", "type": "recommended", "evidence": [ { "id": "A0A5G2QZZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ] } ], "protein_names": [ { "name": "Mono-ADP ribosylhydrolase 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QZZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MACROD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8", "locus": { "chromosome": "2", "start_pos": 8088595, "end_pos": 7939125, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013043", "url": "https://www.ensembl.org/id/ENSSSCG00000013043" } ] } } ], "crossref": [ { "id": "A0A5G2QZZ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013043", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013043", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02908", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02908", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11106:SF93", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11106:SF93", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "68792", "url": "https://www.rhea-db.org/rhea/68792", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BDZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BDZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BDZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BDZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XNH5", "url": "https://www.uniprot.org/uniprotkb/A0A480XNH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XNH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XNH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLQSRVSGRLAQLRAAGQLLGAPRPWPGPSAGATRTRSSACGPPASLGAYDSGARTPAGVGAGGAAAVGRRAGVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFIRLKKIPTWKETAKGITAKVEEPKYKKDKQLNEKISLFRGDITKLEVDAIVNAGESQSLGGGACFLSPPGPWPAGEKDGDRVKLRVGLILSPPTDVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKDKVDRLIICVFLEKDENIYRQRLPYYFPVGMYPAVPTLGCPCPAPTSRFSLSSAFQPDGTPPPTLTRTGKKGLALRVAAH", "length": 367, "header": "tr|A0A5G2QZZ8-1|A0A5G2QZZ8_PIG Isoform 1 of Mono-ADP ribosylhydrolase 1 OS=Sus scrofa OX=9823 GN=MACROD1 PE=1 SV=1 CANONICAL=A0A5G2QZZ8-1" }, "isoforms": [ { "isoform_ac": "A0A287BDZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BDZ2/entry", "sequence": { "sequence": "MSLQSRVSGRLAQLRAAGQLLGAPRPWPGPSAGATRTRSSACGPPASLGAYDSGARTPAGVGAGGAAAVGRRAGVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFIRLKKIPTWKETAKGITAKVEEPKYKKDKQLNEKISLFRGDITKLEVDAIVNAGEWGLDGCIHRAAGPLLTDECRTLQSCETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKDKVDRLIICVFLEKDENIYRQRLPYYFPVDSPGPAGPRSQL", "length": 330, "header": "tr|A0A287BDZ2-1|A0A287BDZ2_PIG Computationally mapped isoform of Mono-ADP ribosylhydrolase 1 OS=Sus scrofa OX=9823 GN=MACROD1 PE=1 SV=3 CANONICAL=A0A5G2QZZ8-1" }, "locus": { "chromosome": "2", "start_pos": 8087591, "end_pos": 7939185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039696.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039696.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054539.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054539.3" } ] } }, { "isoform_ac": "A0A480XNH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XNH5/entry", "sequence": { "sequence": "MSLQSRVSGRLAQLRAAGQLLGAPRPWPGPSAGATRTRSSACGPPASLGAYDSGARTPAGVGAGGAAAVGRRAGVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFIRLKKIPTWKETAKGITAKVEEPKYKKDKQLNEKISLFRGDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKDKVDRLIICVFLEKDENIYRQRLPYYFPVDSPGPAGPRSQL", "length": 336, "header": "tr|A0A480XNH5-1|A0A480XNH5_PIG Computationally mapped isoform of Mono-ADP ribosylhydrolase 1 OS=Sus scrofa OX=9823 GN=MACROD1 PE=1 SV=1 CANONICAL=A0A5G2QZZ8-1" }, "locus": { "chromosome": "2", "start_pos": 8087591, "end_pos": 7939185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014256.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014256.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013870.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013870.3" } ] } }, { "isoform_ac": "A0A5G2QVC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC5/entry", "sequence": { "sequence": "SLESGSEGPRLGRSTLGSCTRCGSARSSTWRGSGDRQPALRHVRAKAGGRTSSPLDGLGLRFLPPLTPPPGAASVWGDLSPAAPRLRTRERAGRAGRALCRLVSAGSRQGPLWLLCAWFPPGVEQVWAGEEGSGWRPREKGAVPGESRIARALGILSPWASAFSVKRAHSVATGSPTFTAPSPAVDGCIHRAAGPLLTDECRTLQSCETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKDKVDRLIICVFLEKDENIYRQRLPYYFPVA", "length": 327, "header": "tr|A0A5G2QVC5-1|A0A5G2QZZ8_PIG Computationally mapped isoform of Mono-ADP ribosylhydrolase 1 OS=Sus scrofa OX=9823 GN=MACROD1 PE=1 SV=1 CANONICAL=A0A5G2QZZ8-1" }, "locus": { "chromosome": "2", "start_pos": 8087356, "end_pos": 8084710, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068798.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068798.1" } ] } }, { "isoform_ac": "A0A5G2QZZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8/entry", "sequence": { "sequence": "MSLQSRVSGRLAQLRAAGQLLGAPRPWPGPSAGATRTRSSACGPPASLGAYDSGARTPAGVGAGGAAAVGRRAGVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCRDFIRLKKIPTWKETAKGITAKVEEPKYKKDKQLNEKISLFRGDITKLEVDAIVNAGESQSLGGGACFLSPPGPWPAGEKDGDRVKLRVGLILSPPTDVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREWLEQHKDKVDRLIICVFLEKDENIYRQRLPYYFPVGMYPAVPTLGCPCPAPTSRFSLSSAFQPDGTPPPTLTRTGKKGLALRVAAH", "length": 367, "header": "tr|A0A5G2QZZ8-1|A0A5G2QZZ8_PIG Isoform 1 of Mono-ADP ribosylhydrolase 1 OS=Sus scrofa OX=9823 GN=MACROD1 PE=1 SV=1 CANONICAL=A0A5G2QZZ8-1" }, "locus": { "chromosome": "2", "start_pos": 8087426, "end_pos": 7939185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084410.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084410.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070441.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070441.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVC5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" }, { "name": "purine nucleoside metabolic process", "id": "GO:0042278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042278", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" }, { "name": "peptidyl-glutamate ADP-deribosylation", "id": "GO:0140291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140291", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "deacetylase activity", "id": "GO:0019213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019213", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" }, { "name": "ADP-ribosylglutamate hydrolase activity", "id": "GO:0140293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140293", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "68792", "name": "", "equation": "alpha-NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "68792", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/68792" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 367, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ8" }, { "id": "PS51154", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51154" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Macro", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 314, "start_aa": "Glu", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R068-1", "uniprot_ac": "A0A5G2R068", "uniprot_id": "A0A5G2R068_PIG", "mass": { "chemical_mass": 48995.0, "monoisotopic_mass": 48995.0 }, "refseq": {}, "gene_names": [ { "name": "EFS", "type": "recommended", "evidence": [ { "id": "A0A5G2R068", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ] } ], "protein_names": [ { "name": "Embryonal Fyn-associated substrate", "type": "synonym", "evidence": [ { "id": "A0A5G2R068", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFS", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068", "locus": { "chromosome": "7", "start_pos": 75731610, "end_pos": 75722183, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002026", "url": "https://www.ensembl.org/id/ENSSSCG00000002026" } ] } } ], "crossref": [ { "id": "A0A5G2R068", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R068", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002026", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002026", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11571", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11571", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12003", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12003", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100158092", "url": "https://www.ncbi.nlm.nih.gov/gene/100158092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158092", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158092", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRNEYEG", "url": "https://omabrowser.org/oma/group/HRNEYEG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9E1", "url": "https://www.orthodb.org/?gene=F1S9E1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10654", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10654", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10654:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10654:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QWX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R068-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9E1", "url": "https://www.uniprot.org/uniprotkb/F1S9E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIATSVYVVPPPARPCPTLVSPPGPCPPSPDPIYKVPRGSGTQLAVPGDALEVYDVPPTALRIPSNGPYDSPASFSRPLARVAPELPGEDEAPYDVPLAPKPPSELELDLEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLEDGEGGVTDEGIYDVPLLGPETPPSPEPLGASASHDLDTLALLLARSPPAPHRPRLPSAESLSRRPLPALPVPEAPSPSPAPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGGEVEDHPGYHNEYEGIPMAEEYDYVHLKGMDKAQEARPPDKASPGDPELLERGQPEQQDPLSPEEPLVLPAGDLQLLHFYAGQCQSYYSALQAAVAALMSSTQANQPPRLFVPHGKRVVVAAHRLVFVGDTLGRLATSGPLRAQVGAAGSALDQALRATVLAVKGAALGYPSSPVAQEMSQCVAELAGRALQFTTLLTSLAP", "length": 467, "header": "tr|A0A5G2R068-1|A0A5G2R068_PIG Isoform 1 of Embryonal Fyn-associated substrate OS=Sus scrofa OX=9823 GN=EFS PE=4 SV=2 CANONICAL=A0A5G2R068-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWX8/entry", "sequence": { "sequence": "MAIATSVYVVPPPARPCPTLVSPPGPCPPSPDPIYKVPRGSGTQLAVPGDALEVYDVPPTALRIPSNGPYDSPASFSRPLARVAPELPGEDETPPSPEPLGASASHDLDTLALLLARSPPAPHRPRLPSAESLSRRPLPALPVPEAPSPSPAPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGGEVEDHPGYHNEYEGIPMAEEYDYVHLKGMDKAQEARPPDKASPGDPELLERGQPEQQDPLSPEEPLVLPAGDLQLLHFYAGQCQSYYSALQAAVAALMSSTQANQPPRLFVPHGKRVVVAAHRLVFVGDTLGRLATSGPLRAQVGAAGSALDQALRATVLAVKGAALGYPSSPVAQEMSQCVAELAGRALQFTTLLTSLAP", "length": 391, "header": "tr|A0A5G2QWX8-1|A0A5G2R068_PIG Computationally mapped isoform of Embryonal Fyn-associated substrate OS=Sus scrofa OX=9823 GN=EFS PE=4 SV=1 CANONICAL=A0A5G2R068-1" }, "locus": { "chromosome": "7", "start_pos": 75730793, "end_pos": 75722433, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082663.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082663.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068650.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068650.1" } ] } }, { "isoform_ac": "A0A5G2R068-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068/entry", "sequence": { "sequence": "MAIATSVYVVPPPARPCPTLVSPPGPCPPSPDPIYKVPRGSGTQLAVPGDALEVYDVPPTALRIPSNGPYDSPASFSRPLARVAPELPGEDEAPYDVPLAPKPPSELELDLEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLEDGEGGVTDEGIYDVPLLGPETPPSPEPLGASASHDLDTLALLLARSPPAPHRPRLPSAESLSRRPLPALPVPEAPSPSPAPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGGEVEDHPGYHNEYEGIPMAEEYDYVHLKGMDKAQEARPPDKASPGDPELLERGQPEQQDPLSPEEPLVLPAGDLQLLHFYAGQCQSYYSALQAAVAALMSSTQANQPPRLFVPHGKRVVVAAHRLVFVGDTLGRLATSGPLRAQVGAAGSALDQALRATVLAVKGAALGYPSSPVAQEMSQCVAELAGRALQFTTLLTSLAP", "length": 467, "header": "tr|A0A5G2R068-1|A0A5G2R068_PIG Isoform 1 of Embryonal Fyn-associated substrate OS=Sus scrofa OX=9823 GN=EFS PE=4 SV=2 CANONICAL=A0A5G2R068-1" }, "locus": { "chromosome": "7", "start_pos": 75730793, "end_pos": 75722433, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079646.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079646.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070544.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070544.2" } ] } }, { "isoform_ac": "F1S9E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9E1/entry", "sequence": { "sequence": "MRSRSDALARPAPPPARPSCLPFGEFCGFSFSSSNLRGGHDSGAAAGGRLHGVGQPLLKSAKQPGLELATRKAKAMAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGPAPKPGLSQVPPAHPGSPHPAPENSNEDQEVYVVPPPARPCPTLVSPPGPCPPSPDPIYKVPRGSGTQLAVPGDALEVYDVPPTALRIPSNGPYDSPASFSRPLARVAPELPGEDEAPYDVPLAPKPPSELELDLEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLEDGEGGVTDEGIYDVPLLGPETPPSPEPLGASASHDLDTLALLLARSPPAPHRPRLPSAESLSRRPLPALPVPEAPSPSPAPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGGEVEDHPGYHNEYEGIPMAEEYDYVHLKGMDKAQEARPPDKASPGDPELLERGQPEQQDPLSPEEPLVLPAGDLQLLHFYAGQCQSYYSALQAAVAALMSSTQANQPPRLFVPHGKRVVVAAHRLVFVGDTLGRLATSGPLRAQVGAAGSALDQALRATVLAVKGAALGYPSSPVAQEMSQCVAELAGRALQFTTLLTSLAP", "length": 635, "header": "tr|F1S9E1-1|F1S9E1_PIG Computationally mapped isoform of Embryonal Fyn-associated substrate OS=Sus scrofa OX=9823 GN=EFS PE=3 SV=2 CANONICAL=A0A5G2R068-1" }, "locus": { "chromosome": "7", "start_pos": 75730793, "end_pos": 75722208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002266.6", "url": "https://www.ensembl.org/id/ENSSSCT00000002266.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002214.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002214.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158092", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158092", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7GR57-1", "protein_name": "Embryonal Fyn-associated substrate", "gene_name": "Efs", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGPAPKPSLTSASPTQPGSCPTPEHGSEEQEVYVVPPPARPCPASGPLARSCSSSPDSIYKVPRVNGTQLTAPRDVLEVYDVPPSILRAPSSCPYDSPASFSCPLAPAVPQPPGEDEAPYDVPLALKPSAELEPDLEWEGGREPGPPLYSAPSNLKRASALLNLYEAPEELLANGESRDSDEGIYDVPLLGPESPSPESPGASSSADLDTVAQLLTKSPPLQHRPRLPSTESLSRRPLPALPVSEAPTPSPAPSPAPGRKGSIQDRPLPPPPPCLPGYGGLKPEGDPECREVDDDSADPHNEYEGIPMAEEYDYVHLKGVDKAQSSRPLDKASAMDPELLERGLQEQQESLTPEEPLVLSTGDLQLLNFYAGQCQSHYSALQAAVAALMSSTQANQPPCLFVPHGKRVVVAAHRLVFVGDTLGRLAASAPLRAQVGAAGTMLGQTLRATVLAVKGAALGYPSGTAVQEMARCVAELAGQALRFTTLLTGLLP", "length": 559 }, "evidence": [ { "id": "A0A5G2R068", "url": "https://omabrowser.org/oma/group/A0A5G2R068/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9TE53-1", "protein_name": "Embryonal Fyn-associated substrate", "gene_name": "EFS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAIATSLYVVPPPARLCPTSRPPTGPCPPSPDPIYKVPRGGGTQLAAPGAALEVYDVPPTALRVPSNGPYDSPASFARPLAQVAPQSLGEDEAPYDVPLAPKSPSDLELDLEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLADGEGGGADEGIYDVPLLGPETPPSPEPLGASASSDLDTLALLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPAPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGREVEDHPAGHHNEYEGIPVAEEYDYVHLKGMDKVQEARPPDKASPGDPEQLEREPPEQQEALSPGESLVLPTGDLQLLHFYAGQCQGHYSTLQAAVAALMSSTQAKQPPHLFVPHGKRALVAAHRLVFVGDTLGRLAASAPLRAQVGAAGTALGQALRATVLAIKGAALGYPSSPAAEEMAQCVADLAGQALQFTTLLTSLAP", "length": 468 }, "evidence": [ { "id": "A0A5G2R068", "url": "https://omabrowser.org/oma/group/A0A5G2R068/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7F497-1", "protein_name": "Embryonal Fyn-associated substrate", "gene_name": "Efs", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPASPAPKPSLCPAPPTQPGCSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSCSPSSDSIYKVPRVNGIQLTAPRDVGEVYDVPPNILRAPSNCPYDSPASFSCPATPVVPQPPGEDEAPYDVPLALKSPAEMEPDLEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLANGESRDADEGIYDVPLLGPEPPSPEPPAASSSADPDTVAQLLTRSPPPQHRPRLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQDRPLPPPPPCLPGYGGLKPEGDPECREVDSDSGGPHNEYEGIPMAEEYDYVHLKGVDKAQGSRPLDNAFPADPELLERGLVEQKEALSPEEPLVLSTGDLQLLHFYAGQCQSHYSALQTAVAALMSSTQANQPPCLFVPHGKRVVVAAHRLVFVGDTLGRLAASAPLRAQVGAAGTVLAQTLRATVLAVKGAALGYPSDTAVQEMARCVAELAGQALRFTTLLAGLLP", "length": 561 }, "evidence": [ { "id": "A0A5G2R068", "url": "https://omabrowser.org/oma/group/A0A5G2R068/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O43281-1", "protein_name": "Embryonal Fyn-associated substrate", "gene_name": "EFS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAIATSTQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGPAPKPSLSPASPAQPGSPYPAPDHSNEDQEVYVVPPPARPCPTSGPPAGPCPPSPDLIYKIPRASGTQLAAPRDALEVYDVPPTALRVPSSGPYDCPASFSHPLTRVAPQPPGEDDAPYDVPLTPKPPAELEPDLEWEGGREPGPPIYAAPSNLKRASALLNLYEAPEELLADGEGGGTDEGIYDVPLLGPEAPPSPEPPGALASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGREMEDDPAGHHNEYEGIPMAEEYDYVHLKGMDKAQGSRPPDQACTGDPELPERGMPAPQEALSPGEPLVVSTGDLQLLYFYAGQCQSHYSALQAAVAALMSSTQANQPPRLFVPHSKRVVVAAHRLVFVGDTLGRLAASAPLRAQVRAAGTALGQALRATVLAVKGAALGYPSSPAIQEMVQCVTELAGQALQFTTLLTSLAP", "length": 561 }, "evidence": [ { "id": "A0A5G2R068", "url": "https://omabrowser.org/oma/group/A0A5G2R068/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64355-1", "protein_name": "Embryonal Fyn-associated substrate", "gene_name": "Efs", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIATSAQLARALYDNTAESPQELSFRRGDVLRVLQREGAGGLDGWCLCSLHGQQGIVPANRVKLLPAGPAPKPSLCPASPTQPGSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSCSPSSDSIYKVPRGNGMQLTASRDVAEVYDVPPNILRAPSSCPYDSPASFSCPVAPVVPQPPREDEAPYDVPLALKPPAELERDPEWEGGREPGPPLYAAPSNLKRASALLNLYEAPEELLANGESRDADEGIYDVPLLGPEPPSPEPPVASSSTDLDTVAQLPTRSSPPQHRPRLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQDRPLPPPPPCLPGYGGLKPEGDPECREVANDPAGPHNEYEGIPMAEEYDYVHLKGVDTAQGSRPLDKAFPVDPELLERGLAERKEALSPEEPLVLSTGDLQLLHFYAGQCQSHYSALQAAVAALVASTQANQPPCLFVPHGKRVVVAAHRLVFVGDTLGRLAASAALRAQVGAAGTMLAQTLRATVLAVKGAALGYPSDTAVQEMARCVAELAGQALRFTTLLDGLLP", "length": 560 }, "evidence": [ { "id": "A0A5G2R068", "url": "https://omabrowser.org/oma/group/A0A5G2R068/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" }, { "name": "cell surface receptor protein tyrosine kinase signaling pathway", "id": "GO:0007169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007169", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R068", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R068-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 467, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R068-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R068" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R068", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R068" }, { "id": "PF12026", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CAS family C-terminal", "eco_id": "ECO_0000259", "start_pos": 278, "end_pos": 462, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R4T5-1", "uniprot_ac": "A0A5G2R4T5", "uniprot_id": "A0A5G2R4T5_PIG", "mass": { "chemical_mass": 32475.0, "monoisotopic_mass": 32475.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Vomeronasal type-1 receptor", "type": "recommended", "evidence": [ { "id": "A0A5G2R4T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5", "locus": {} } ], "crossref": [ { "id": "A0A5G2R4T5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044943", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044943", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24062", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24062", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QX98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F707", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F707", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F707-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F707-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE13", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSLYLLPTDHNKCPKNTSQAALKTIYLLQMGVEALASVILFFHHTFPVLLGHKQRLTHMAIASLLVLLSSGSPLSRIVCKFVSYTRKVACSSTLCFTCVLSTYHVFILMSRRAEKTTLQGRAPKIIGPSCYVLWIFGVLMYIHVPLKITGPQDMHNYTDTQGNWFCSSSGPDTGFGCLWSISDVLFIGLMAWSSGSMLLLLHRHHQRMQYIHRAAHTILMLVVTFVFFFVLNSSFAFYVTAYTHLHLWLIQTTHLLASCFPTFSPFFLILGDPRAPRCCSRGVRNCG", "length": 288, "header": "tr|A0A5G2R4T5-1|A0A5G2R4T5_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R4T5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QX98-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX98/entry", "sequence": { "sequence": "SSLHGPSTQNTSQAALKTIYLLQMGVEALASVILFFHHTFPVLLGHKQRLTHMAIASLLVLLSSGSPLSRIVCKFVSYTRKVACSSTLCFTCVLSTYHVFILMSRRAEKTTLQGRAPKIIGPSCYVLWIFGVLMYIHVPLKITGPQDMHNYTDTQGNWFCSSSGPDTGFGCLWSISDVLFIGLMAWSSGSMLLLLHRHHQRMQYIHRAAHTILMLVVTFVFFFVLNSSFAFYVTAYTHLHLWLIQTTHLLASCFPTFSPFFLILGDPRAPRCCSRGVRNCG", "length": 281, "header": "tr|A0A5G2QX98-1|A0A5G2R4T5_PIG Computationally mapped isoform of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R4T5-1" }, "locus": { "chromosome": "6", "start_pos": 59887588, "end_pos": 59886422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066724.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066724.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066559.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066559.1" } ] } }, { "isoform_ac": "A0A5G2R4T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5/entry", "sequence": { "sequence": "MQSLYLLPTDHNKCPKNTSQAALKTIYLLQMGVEALASVILFFHHTFPVLLGHKQRLTHMAIASLLVLLSSGSPLSRIVCKFVSYTRKVACSSTLCFTCVLSTYHVFILMSRRAEKTTLQGRAPKIIGPSCYVLWIFGVLMYIHVPLKITGPQDMHNYTDTQGNWFCSSSGPDTGFGCLWSISDVLFIGLMAWSSGSMLLLLHRHHQRMQYIHRAAHTILMLVVTFVFFFVLNSSFAFYVTAYTHLHLWLIQTTHLLASCFPTFSPFFLILGDPRAPRCCSRGVRNCG", "length": 288, "header": "tr|A0A5G2R4T5-1|A0A5G2R4T5_PIG Isoform 1 of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R4T5-1" }, "locus": { "chromosome": "6", "start_pos": 59888168, "end_pos": 59886422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089525.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089525.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069200.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069200.1" } ] } }, { "isoform_ac": "A0A8W4F707-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F707/entry", "sequence": { "sequence": "MYILFHCIFLNTSQAALKTIYLLQMGVEALASVILFFHHTFPVLLGHKQRLTHMAIASLLVLLSSGSPLSRIVCKFVSYTRKVACSSTLCFTCVLSTYHVFILMSRRAEKTTLQGRAPKIIGPSCYVLWIFGVLMYIHVPLKITGPQDMHNYTDTQGNWFCSSSGPDTGFGCLWSISDVLFIGLMAWSSGSMLLLLHRHHQRMQYIHRAAHTILMLVVTFVFFFVLNSSFAFYVTAYTHLHLWLIQTTHLLASCFPTFSPFFLILGDPRAPRCCSRGVRNCG", "length": 282, "header": "tr|A0A8W4F707-1|A0A8W4F707_PIG Computationally mapped isoform of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R4T5-1" }, "locus": { "chromosome": "6", "start_pos": 59887920, "end_pos": 59886422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105899.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105899.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074973.1" } ] } }, { "isoform_ac": "A0A8W4FE13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE13/entry", "sequence": { "sequence": "SFSRLPWLFGICPKNTSQAALKTIYLLQMGVEALASVILFFHHTFPVLLGHKQRLTHMAIASLLVLLSSGSPLSRIVCKFVSYTRKVACSSTLCFTCVLSTYHVFILMSRRAEKTTLQGRAPKIIGPSCYVLWIFGVLMYIHVPLKITGPQDMHNYTDTQGNWFCSSSGPDTGFGCLWSISDVLFIGLMAWSSGSMLLLLHRHHQRMQYIHRAAHTILMLVVTFVFFFVLNSSFAFYVTAYTHLHLWLIQTTHLLASCFPTFSPFFLILGDPRAPRCCSRGVRNCG", "length": 286, "header": "tr|A0A8W4FE13-1|A0A8W4FE13_PIG Computationally mapped isoform of Vomeronasal type-1 receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R4T5-1" }, "locus": { "chromosome": "6", "start_pos": 59887726, "end_pos": 59886422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102169.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102169.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076550.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076550.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX98", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to pheromone", "id": "GO:0019236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019236", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pheromone receptor activity", "id": "GO:0016503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016503", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5" } ], "pmid": "" }, { "name": "pheromone binding", "id": "GO:0005550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005550", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4T5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4T5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R4T5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 288, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R4T5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R4T5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 17, "end_pos": 19 }, { "start_pos": 233, "end_pos": 235 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S683-1", "uniprot_ac": "F1S683", "uniprot_id": "F1S683_PIG", "mass": { "chemical_mass": 29556.0, "monoisotopic_mass": 29556.0 }, "refseq": { "ac": "XP_003357610", "name": "acyl-CoA-binding domain-containing protein 6 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357610" }, "gene_names": [ { "name": "ACBD6", "type": "recommended", "evidence": [ { "id": "F1S683", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ] }, { "name": "ACBD6", "type": "synonym", "evidence": [ { "id": "XP_003357610", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357610" } ] } ], "protein_names": [ { "name": "Acyl-CoA-binding domain-containing protein 6", "type": "recommended", "evidence": [ { "id": "F1S683", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S683/entry#names_and_taxonomy" } ] }, { "name": "acyl-CoA-binding domain-containing protein 6 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003357610", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357610" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACBD6", "url": "https://www.uniprot.org/uniprotkb/F1S683", "locus": { "chromosome": "9", "start_pos": 121913053, "end_pos": 122115783, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015534", "url": "https://www.ensembl.org/id/ENSSSCG00000015534" } ] } } ], "crossref": [ { "id": "F1S683", "url": "https://alphafold.ebi.ac.uk/entry/F1S683", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015534", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015534", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525243", "url": "https://www.ncbi.nlm.nih.gov/gene/100525243", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXN5", "url": "https://www.orthodb.org/?gene=A0A5G2QXN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24119:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24119:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00887", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00887", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-77289", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003357610", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357610", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QXN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S683-1", "url": "https://www.uniprot.org/uniprotkb/F1S683-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPFLPSGATTGDSGGELSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPDWNPQLPEKKGKETNTGFGGPVVSSLYHEEIIREEDKNIFDYCRENNIDHITKVIKSKNVDVNMKDEEGRALLHWACDRGHKDLVTVLLQYRADINSQREGGTGCLDQLSCEFLQGLQSDGLMASCEWFLSEILLNKLMPRQ", "length": 265, "header": "tr|F1S683-1|F1S683_PIG Isoform 1 of Acyl-CoA-binding domain-containing protein 6 OS=Sus scrofa OX=9823 GN=ACBD6 PE=1 SV=4 CANONICAL=F1S683-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN5/entry", "sequence": { "sequence": "MASPFLPSGATTGDSGGELSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPDWNPQLPEKKGKETNTGFGGPVVSSLYHEEIIREEDKNIFDYCRENNIDHITKVIKSKNVDVNMKDEEGRALLHWACDRGHKDLVTVLLQYRADINSQQQVSSRHGGPSVFHMPRKHSIFHSFVYSTASFF", "length": 254, "header": "tr|A0A5G2QXN5-1|F1S683_PIG Computationally mapped isoform of Acyl-CoA-binding domain-containing protein 6 OS=Sus scrofa OX=9823 GN=ACBD6 PE=1 SV=1 CANONICAL=F1S683-1" }, "locus": { "chromosome": "9", "start_pos": 122115473, "end_pos": 121969898, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069377.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069377.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066704.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066704.1" } ] } }, { "isoform_ac": "F1S683-1", "url": "https://www.uniprot.org/uniprotkb/F1S683/entry", "sequence": { "sequence": "MASPFLPSGATTGDSGGELSSGDDSGDAESLQSPETEASRSLTELFEKAAAHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPDWNPQLPEKKGKETNTGFGGPVVSSLYHEEIIREEDKNIFDYCRENNIDHITKVIKSKNVDVNMKDEEGRALLHWACDRGHKDLVTVLLQYRADINSQREGGTGCLDQLSCEFLQGLQSDGLMASCEWFLSEILLNKLMPRQ", "length": 265, "header": "tr|F1S683-1|F1S683_PIG Isoform 1 of Acyl-CoA-binding domain-containing protein 6 OS=Sus scrofa OX=9823 GN=ACBD6 PE=1 SV=4 CANONICAL=F1S683-1" }, "locus": { "chromosome": "9", "start_pos": 122115473, "end_pos": 121944114, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016923.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016923.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016470.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016470.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXN5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-77289", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "resource": "Reactome", "description": "Mitochondrial Fatty Acid Beta-Oxidation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "fatty-acyl-CoA binding", "id": "GO:0000062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000062", "evidence": [ { "database": "UniProtKB", "id": "F1S683", "url": "https://www.uniprot.org/uniprotkb/F1S683" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S683-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 265, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S683-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S683" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S683", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S683" }, { "id": "PS51228", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51228" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ACB", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 127, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ57-1", "uniprot_ac": "A0A5G2QZ57", "uniprot_id": "A0A5G2QZ57_PIG", "mass": { "chemical_mass": 59571.0, "monoisotopic_mass": 59571.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "CCHC-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ57", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048341", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048341", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTLDVGWPSEGTFNSEIILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSRRGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTGLVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPLTRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLMEAFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRRETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSGNLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD", "length": 524, "header": "tr|A0A5G2QZ57-1|A0A5G2QZ57_PIG Isoform 1 of CCHC-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ57-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ57-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57/entry", "sequence": { "sequence": "MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTLDVGWPSEGTFNSEIILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKHSAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSRRGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTGLVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPLTRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLMEAFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRRETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSGNLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD", "length": 524, "header": "tr|A0A5G2QZ57-1|A0A5G2QZ57_PIG Isoform 1 of CCHC-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ57-1" }, "locus": { "chromosome": "16", "start_pos": 59574531, "end_pos": 59572960, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080787.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080787.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067228.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067228.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ57", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 524, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ57" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ57" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 493, "end_pos": 508, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 448, "end_pos": 450 }, { "start_pos": 484, "end_pos": 486 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ65-1", "uniprot_ac": "A0A5G2QZ65", "uniprot_id": "A0A5G2QZ65_PIG", "mass": { "chemical_mass": 12730.0, "monoisotopic_mass": 12730.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ65", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ65", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041422", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041422", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZ65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPLSPQPLPHLLFVDLLMMAILTGVRWYLMVVSICISLIISDVEHFFMCLLAICISPLEKCLLRSFAHFSID", "length": 112, "header": "tr|A0A5G2QZ65-1|A0A5G2QZ65_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ65-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65/entry", "sequence": { "sequence": "MPKSGIVGSYGSSMYRFLRYLQTVLHSGCTSLHSHQQCRRVPLSPQPLPHLLFVDLLMMAILTGVRWYLMVVSICISLIISDVEHFFMCLLAICISPLEKCLLRSFAHFSID", "length": 112, "header": "tr|A0A5G2QZ65-1|A0A5G2QZ65_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ65-1" }, "locus": { "chromosome": "8", "start_pos": 97587507, "end_pos": 97587172, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079492.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079492.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069433.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069433.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ65" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ65-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ65-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ65" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ80-1", "uniprot_ac": "A0A5G2QZ80", "uniprot_id": "A0A5G2QZ80_PIG", "mass": { "chemical_mass": 43022.0, "monoisotopic_mass": 43022.0 }, "refseq": {}, "gene_names": [ { "name": "UBE2Q2", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ] } ], "protein_names": [ { "name": "Ubiquitin-conjugating enzyme E2 Q2", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.23", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry#names_and_taxonomy" } ] }, { "name": "E2 ubiquitin-conjugating enzyme Q2", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin carrier protein Q2", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin-protein ligase Q2", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80#function" }, { "database": "UniProtKB", "id": "ARBA00059410", "url": "https://www.uniprot.org/uniprotkb/ARBA00059410#function" }, { "database": "UniProtKB", "id": "I3LG05", "url": "https://www.uniprot.org/uniprotkb/I3LG05#function" }, { "database": "UniProtKB", "id": "A0A286ZUS7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUS7#function" }, { "database": "UniProtKB", "id": "A0A480DM10", "url": "https://www.uniprot.org/uniprotkb/A0A480DM10#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE2Q2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80", "locus": { "chromosome": "7", "start_pos": 56144916, "end_pos": 56084072, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027457", "url": "https://www.ensembl.org/id/ENSSSCG00000027457" } ] } } ], "crossref": [ { "id": "A0A5G2QZ80", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ80", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027457", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027457", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23802", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23802", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621770", "url": "https://www.ncbi.nlm.nih.gov/gene/100621770", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621770", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KWLICDL", "url": "https://omabrowser.org/oma/group/KWLICDL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480DM10", "url": "https://www.orthodb.org/?gene=A0A480DM10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZUS7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480DM10", "url": "https://www.uniprot.org/uniprotkb/A0A480DM10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480DM10-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DM10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG05", "url": "https://www.uniprot.org/uniprotkb/I3LG05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG05-1", "url": "https://www.uniprot.org/uniprotkb/I3LG05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSLRQQLKWLICELCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGTFNSINLFLL", "length": 378, "header": "tr|A0A5G2QZ80-1|A0A5G2QZ80_PIG Isoform 1 of Ubiquitin-conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=1 CANONICAL=A0A5G2QZ80-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUS7/entry", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 342, "header": "tr|A0A286ZUS7-1|A0A286ZUS7_PIG Computationally mapped isoform of Ubiquitin-conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=1 CANONICAL=A0A5G2QZ80-1" }, "locus": { "chromosome": "7", "start_pos": 56143299, "end_pos": 56084339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056285.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056285.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035210.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035210.1" } ] } }, { "isoform_ac": "A0A480DM10-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DM10/entry", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSLRQQLKWLICELCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 377, "header": "tr|A0A480DM10-1|A0A480DM10_PIG Computationally mapped isoform of Ubiquitin-conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=1 CANONICAL=A0A5G2QZ80-1" }, "locus": { "chromosome": "7", "start_pos": 56143299, "end_pos": 56084339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065609.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065609.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037354.1" } ] } }, { "isoform_ac": "A0A5G2QZ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80/entry", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSLRQQLKWLICELCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGTFNSINLFLL", "length": 378, "header": "tr|A0A5G2QZ80-1|A0A5G2QZ80_PIG Isoform 1 of Ubiquitin-conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=1 CANONICAL=A0A5G2QZ80-1" }, "locus": { "chromosome": "7", "start_pos": 56141225, "end_pos": 56084339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082150.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082150.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070193.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070193.1" } ] } }, { "isoform_ac": "A0A5G2REB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REB4/entry", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSLRQQLKWLICELCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVMTCVCLDQCCFKEKSFQHADTSFGCPYNSSTEDVS", "length": 344, "header": "tr|A0A5G2REB4-1|A0A5G2REB4_PIG Computationally mapped isoform of Ubiquitin conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=1 CANONICAL=A0A5G2QZ80-1" }, "locus": { "chromosome": "7", "start_pos": 56143412, "end_pos": 56084339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067668.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067668.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072946.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072946.1" } ] } }, { "isoform_ac": "I3LG05-1", "url": "https://www.uniprot.org/uniprotkb/I3LG05/entry", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSLRQQLKWLICELCRLYNLPKHLDVEMLDQPLPTGQDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 358, "header": "tr|I3LG05-1|I3LG05_PIG Computationally mapped isoform of Ubiquitin-conjugating enzyme E2 Q2 OS=Sus scrofa OX=9823 GN=UBE2Q2 PE=4 SV=3 CANONICAL=A0A5G2QZ80-1" }, "locus": { "chromosome": "7", "start_pos": 56143299, "end_pos": 56084339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032240.3", "url": "https://www.ensembl.org/id/ENSSSCT00000032240.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022998.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022998.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621770", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A3J4-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSVSGLKAELKFLESIFDKDHERFRIVSWKLDELHCQFVLLPPPPGSGPPPPPPLTIHCNITESYPSSSPIWFVESDDPNLTSVLERLEDIKKSNTLLLQQLKRLICDLCRLYNLPQHPDVEMLDQPLPAGQNGTTEEVTSEEEEEEDMGEDIEDLDHYDMKEEEPVDGKKSEDEGIEKENLAILEKIRKNQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELVNDSLYEWHVKLLKISPCLSYRVDPDSPLHSDLQVLKEKEGVEYILLNFSFKDNFPFDPPFVRVVSPVLTGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYKSLVQIHEKNGWYTPPKEDG", "length": 385 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A1G2-1", "protein_name": "E2 ubiquitin-conjugating enzyme", "gene_name": "Ube2q2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPPPPGSSHSPPPPLTLHCNITVRRRAVAPPGRAGADGGAAVPGQRAPAPETPGVSGAAGWRLGPGPGPELRLLGPEEAEARRSTARAGFALLAPRGPRRAPRSPWPPAAVLIWGPRRVGGLLSAAQESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 482 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q32L27-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPAPPGSPHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNNSNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 342 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K2Z8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "Ube2q2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPPPPPPPGSSLSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQLKWLICDLCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 378 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WVN8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 Q2", "gene_name": "UBE2Q2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNITESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG", "length": 375 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WFM4-1", "protein_name": "E2 ubiquitin-conjugating enzyme", "gene_name": "ube2q2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVSGLKAELKFLESIFDPNHERFRIIDWKPDELSCQFNVTGEKLLIIHCNITESYPSTPPIWFVDSDDPSLTEVLERLEDVRKGNALLLQQLKRLICDLCRLYNLPQHPDVEMLDQPLPAGPISNDKKHGTTDEVTSEEEEEEEMAEQDIEDLDHYEMKEEPVDGKKSEDDGIEKENLAILEKIRKNQRQDHLNVSVHSGAVSGSVQASDRLMKELREIYRSQSYKTGIYSVELVNDSLYEWHVKLRTVDPDSPLHSDLQVLKEKEGMDYILLNFSYKDNFPFDPPFVRVVSPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYKSLVQIHEKNGWYTPPKEDG", "length": 379 }, "evidence": [ { "id": "A0A5G2QZ80", "url": "https://omabrowser.org/oma/group/A0A5G2QZ80/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 378, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ80" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ80" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 206, "end_pos": 370, "start_aa": "Gln", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 329, "end_pos": 331 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 61, "end_pos": 63 }, { "start_pos": 81, "end_pos": 83 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ83-1", "uniprot_ac": "A0A5G2QZ83", "uniprot_id": "A0A5G2QZ83_PIG", "mass": { "chemical_mass": 11096.0, "monoisotopic_mass": 11096.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZ83", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ83", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046603", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046603", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLMSENVLPMFSSRSWMVSCLTFKSLSHFEFIFVHGVRVCSSFTALHAAVQFSQQFLLNRLSFPHFMLLPHLCFLDHNVTSFLRRSRKRNNNN", "length": 94, "header": "tr|A0A5G2QZ83-1|A0A5G2QZ83_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ83-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83/entry", "sequence": { "sequence": "MRLMSENVLPMFSSRSWMVSCLTFKSLSHFEFIFVHGVRVCSSFTALHAAVQFSQQFLLNRLSFPHFMLLPHLCFLDHNVTSFLRRSRKRNNNN", "length": 94, "header": "tr|A0A5G2QZ83-1|A0A5G2QZ83_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZ83-1" }, "locus": { "chromosome": "7", "start_pos": 10592918, "end_pos": 10592637, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085948.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085948.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067253.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067253.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ83-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 94, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ83-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ83" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZ86-1", "uniprot_ac": "A0A5G2QZ86", "uniprot_id": "A0A5G2QZ86_PIG", "mass": { "chemical_mass": 43831.0, "monoisotopic_mass": 43831.0 }, "refseq": {}, "gene_names": [ { "name": "ANKDD1A", "type": "recommended", "evidence": [ { "id": "A0A5G2QZ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and death domain containing 1A", "type": "synonym", "evidence": [ { "id": "A0A5G2QZ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKDD1A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86", "locus": { "chromosome": "1", "start_pos": 107094123, "end_pos": 107135517, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004545", "url": "https://www.ensembl.org/id/ENSSSCG00000004545" } ] } } ], "crossref": [ { "id": "A0A5G2QZ86", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ86", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004545", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004545", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24125:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24125:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZ86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DGLTLLHCAALKGHVPVLAFIMEDLEDVALDHADKLGRTAFHRAVEHGQLGALDFLVGSGCDHSVKDKEGNTALHLAAGRGHLAVLQRLVDIGLDLEEQNVEGLTALHAAAEGIHPDCVQLLLGAGSSVNALTQKKQSCLHYAVLGGSEDMVRALIHAGASTSVADHQGASPVHLAVRHNFPILVQLLIDAGSDLDATDNRQQTPLHLAAEHARQDIAEMLLVAGVDLNLRDKQGKTALAVAARSNHINLVDMIIKADRFYRWEKDHLSYRDPCDPSGKSLTFKQDHRQEMQQLRSVLWRLASRYLRPHEWKKLAYHWEFTEAHVYAMEQQWTGTKSYQEHGHRMLLIWLHGVIMAGENSSKALFEGLVAIGRRDLAESIRKKASDDLSAPRRCTAM", "length": 397, "header": "tr|A0A5G2QZ86-1|A0A5G2QZ86_PIG Isoform 1 of Ankyrin repeat and death domain containing 1A OS=Sus scrofa OX=9823 GN=ANKDD1A PE=4 SV=2 CANONICAL=A0A5G2QZ86-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ86-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86/entry", "sequence": { "sequence": "DGLTLLHCAALKGHVPVLAFIMEDLEDVALDHADKLGRTAFHRAVEHGQLGALDFLVGSGCDHSVKDKEGNTALHLAAGRGHLAVLQRLVDIGLDLEEQNVEGLTALHAAAEGIHPDCVQLLLGAGSSVNALTQKKQSCLHYAVLGGSEDMVRALIHAGASTSVADHQGASPVHLAVRHNFPILVQLLIDAGSDLDATDNRQQTPLHLAAEHARQDIAEMLLVAGVDLNLRDKQGKTALAVAARSNHINLVDMIIKADRFYRWEKDHLSYRDPCDPSGKSLTFKQDHRQEMQQLRSVLWRLASRYLRPHEWKKLAYHWEFTEAHVYAMEQQWTGTKSYQEHGHRMLLIWLHGVIMAGENSSKALFEGLVAIGRRDLAESIRKKASDDLSAPRRCTAM", "length": 397, "header": "tr|A0A5G2QZ86-1|A0A5G2QZ86_PIG Isoform 1 of Ankyrin repeat and death domain containing 1A OS=Sus scrofa OX=9823 GN=ANKDD1A PE=4 SV=2 CANONICAL=A0A5G2QZ86-1" }, "locus": { "chromosome": "1", "start_pos": 107122650, "end_pos": 107096214, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086840.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086840.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067258.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067258.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZ86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 397, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZ86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZ86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZ86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ86" }, { "id": "PS50017", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Death", "eco_id": "ECO_0000259", "start_pos": 310, "end_pos": 384, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 359, "end_pos": 361 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZC6-1", "uniprot_ac": "A0A5G2QZC6", "uniprot_id": "A0A5G2QZC6_PIG", "mass": { "chemical_mass": 16512.0, "monoisotopic_mass": 16512.0 }, "refseq": {}, "gene_names": [ { "name": "UBE2N", "type": "recommended", "evidence": [ { "id": "A0A5G2QZC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ] } ], "protein_names": [ { "name": "Ubiquitin conjugating enzyme E2 N", "type": "synonym", "evidence": [ { "id": "A0A5G2QZC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE2N", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZC6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000908", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000908", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23813", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23813", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NDAANLW", "url": "https://omabrowser.org/oma/group/NDAANLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-445989", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445989", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450302", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450302", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450321", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450321", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693565", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693571", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693571", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8866654", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-937039", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-937039", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-937041", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-937041", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9646399", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975144", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975144", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAGLPFPSILSGETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDNWEEYWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI", "length": 147, "header": "tr|A0A5G2QZC6-1|A0A5G2QZC6_PIG Isoform 1 of Ubiquitin conjugating enzyme E2 N OS=Sus scrofa OX=9823 GN=UBE2N PE=1 SV=1 CANONICAL=A0A5G2QZC6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6/entry", "sequence": { "sequence": "MNAGLPFPSILSGETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDNWEEYWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI", "length": 147, "header": "tr|A0A5G2QZC6-1|A0A5G2QZC6_PIG Isoform 1 of Ubiquitin conjugating enzyme E2 N OS=Sus scrofa OX=9823 GN=UBE2N PE=1 SV=1 CANONICAL=A0A5G2QZC6-1" }, "locus": { "chromosome": "5", "start_pos": 89707781, "end_pos": 89702682, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075768.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075768.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070241.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070241.1" } ] } }, { "isoform_ac": "A0A5G2RGI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGI4/entry", "sequence": { "sequence": "MWVHMPLFSRETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDNWEEYWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI", "length": 144, "header": "tr|A0A5G2RGI4-1|A0A5G2RGI4_PIG Computationally mapped isoform of Ubiquitin conjugating enzyme E2 N OS=Sus scrofa OX=9823 GN=UBE2N PE=1 SV=1 CANONICAL=A0A5G2QZC6-1" }, "locus": { "chromosome": "5", "start_pos": 89707781, "end_pos": 89706087, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087389.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087389.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074113.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074113.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-445989", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445989", "resource": "Reactome", "description": "TAK1-dependent IKK and NF-kappa-B activation" }, { "id": "R-SSC-450302", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450302", "resource": "Reactome", "description": "activated TAK1 mediates p38 MAPK activation" }, { "id": "R-SSC-450321", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450321", "resource": "Reactome", "description": "JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5693565", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "resource": "Reactome", "description": "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks" }, { "id": "R-SSC-5693571", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693571", "resource": "Reactome", "description": "Nonhomologous End-Joining (NHEJ)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" }, { "id": "R-SSC-8866654", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "resource": "Reactome", "description": "E3 ubiquitin ligases ubiquitinate target proteins" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-937039", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-937039", "resource": "Reactome", "description": "IRAK1 recruits IKK complex" }, { "id": "R-SSC-937041", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-937041", "resource": "Reactome", "description": "IKK complex recruitment mediated by RIP1" }, { "id": "R-SSC-9646399", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "resource": "Reactome", "description": "Aggrephagy" }, { "id": "R-SSC-975144", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975144", "resource": "Reactome", "description": "IRAK1 recruits IKK complex upon TLR7/8 or 9 stimulation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q94A97-1", "protein_name": "Ubiquitin-conjugating enzyme E2 35", "gene_name": "UBC35", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASGA", "length": 153 }, "evidence": [ { "id": "A0A5G2QZC6", "url": "https://omabrowser.org/oma/group/A0A5G2QZC6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VJS5-1", "protein_name": "UBC core domain-containing protein", "gene_name": "Dmel\\CG3473", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAALTPRIIKETQRLLEDPVPGISATPDECNARYFHVLVTGPKDSPFEGGNFKLELFLPEDYPMKAPKVRFLTKIFHPNIDRVGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNERRAIQLARECTLKHAMQN", "length": 151 }, "evidence": [ { "id": "A0A5G2QZC6", "url": "https://omabrowser.org/oma/group/A0A5G2QZC6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein K63-linked ubiquitination", "id": "GO:0070534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070534", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "pmid": "" }, { "name": "DNA damage tolerance", "id": "GO:0006301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006301", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZC6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZC6" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 144, "start_aa": "Pro", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZD3-1", "uniprot_ac": "A0A5G2QZD3", "uniprot_id": "A0A5G2QZD3_PIG", "mass": { "chemical_mass": 16793.0, "monoisotopic_mass": 16793.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ferritin", "type": "recommended", "evidence": [ { "id": "A0A5G2QZD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044285", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044285", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431:SF97", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431:SF97", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRTSSCSSHPRFRAAFPLALGPAPPALVITPPSQVRQNFHPECEAALNGHANLELHASYAYLLMELMSLQNRRGGRLCFRDIRKPDLEAWGAASGPCSAPCTWRSLRISTDGGGRCSMGPWKTKSVFPLQIMQGGRWSGAPHECWCLCIVKV", "length": 153, "header": "tr|A0A5G2QZD3-1|A0A5G2QZD3_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZD3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3/entry", "sequence": { "sequence": "MTRTSSCSSHPRFRAAFPLALGPAPPALVITPPSQVRQNFHPECEAALNGHANLELHASYAYLLMELMSLQNRRGGRLCFRDIRKPDLEAWGAASGPCSAPCTWRSLRISTDGGGRCSMGPWKTKSVFPLQIMQGGRWSGAPHECWCLCIVKV", "length": 153, "header": "tr|A0A5G2QZD3-1|A0A5G2QZD3_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZD3-1" }, "locus": { "chromosome": "X", "start_pos": 33273890, "end_pos": 33272215, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079277.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079277.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070246.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070246.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular iron ion homeostasis", "id": "GO:0006879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006879", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "pmid": "" }, { "name": "iron ion transport", "id": "GO:0006826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006826", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ferrous iron binding", "id": "GO:0008198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "pmid": "" }, { "name": "ferric iron binding", "id": "GO:0008199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008199", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZD3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZD3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 153, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZD3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZD3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QZD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZD3" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 55, "amino_acid": "Glu", "chebi_lig_id": "CHEBI:24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 55, "end_pos": 55, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZE0-1", "uniprot_ac": "A0A5G2QZE0", "uniprot_id": "A0A5G2QZE0_PIG", "mass": { "chemical_mass": 25777.0, "monoisotopic_mass": 25777.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "S1-like RNA binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044685", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044685", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR45418", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45418", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45418:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45418:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QZE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGRPCDTKLKTVQGVVTRYCSDYGMIDDLIYFSNEAVTSRVLLNVGQEVIALVEENQVSSGLKAIRVSRSQGRGPSDPRPRVLIGCVTSLMAGAGYISQTTYFSLDSVCEAGLARERSWGVGARRAQAGSVHGAAGTVLQVCVSSLCGRNGVIDDCIFFTLDSLKLPEGYVPRRFDVVSAVVVESSQSCYAWRALCMTPLRLTCRHVPAPGPRTASHLGRVPLFWERGGGLCPSQDR", "length": 239, "header": "tr|A0A5G2QZE0-1|A0A5G2QZE0_PIG Isoform 1 of S1-like RNA binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZE0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0/entry", "sequence": { "sequence": "MAEGRPCDTKLKTVQGVVTRYCSDYGMIDDLIYFSNEAVTSRVLLNVGQEVIALVEENQVSSGLKAIRVSRSQGRGPSDPRPRVLIGCVTSLMAGAGYISQTTYFSLDSVCEAGLARERSWGVGARRAQAGSVHGAAGTVLQVCVSSLCGRNGVIDDCIFFTLDSLKLPEGYVPRRFDVVSAVVVESSQSCYAWRALCMTPLRLTCRHVPAPGPRTASHLGRVPLFWERGGGLCPSQDR", "length": 239, "header": "tr|A0A5G2QZE0-1|A0A5G2QZE0_PIG Isoform 1 of S1-like RNA binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZE0-1" }, "locus": { "chromosome": "5", "start_pos": 565958, "end_pos": 554612, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073598.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073598.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070256.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070256.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZE0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZE0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 239, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZE0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZE0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZF5-1", "uniprot_ac": "A0A5G2QZF5", "uniprot_id": "A0A5G2QZF5_PIG", "mass": { "chemical_mass": 22265.0, "monoisotopic_mass": 22265.0 }, "refseq": {}, "gene_names": [ { "name": "VSTM2L", "type": "recommended", "evidence": [ { "id": "A0A5G2QZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ] } ], "protein_names": [ { "name": "V-set and transmembrane domain-containing protein 2-like protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VSTM2L", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5", "locus": { "chromosome": "17", "start_pos": 41019845, "end_pos": 40978794, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007338", "url": "https://www.ensembl.org/id/ENSSSCG00000007338" } ] } } ], "crossref": [ { "id": "A0A5G2QZF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007338", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007338", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12207:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12207:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAPLAVALGALHYLALFLQLGGATRPSGHAPWDNHVGHALFTETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKDATKISVVKVVGSNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAPPPPKPGKELRKRSVDEEACSL", "length": 203, "header": "tr|A0A5G2QZF5-1|A0A5G2QZF5_PIG Isoform 1 of V-set and transmembrane domain-containing protein 2-like protein OS=Sus scrofa OX=9823 GN=VSTM2L PE=4 SV=1 CANONICAL=A0A5G2QZF5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5/entry", "sequence": { "sequence": "MGAPLAVALGALHYLALFLQLGGATRPSGHAPWDNHVGHALFTETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKDATKISVVKVVGSNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAPPPPKPGKELRKRSVDEEACSL", "length": 203, "header": "tr|A0A5G2QZF5-1|A0A5G2QZF5_PIG Isoform 1 of V-set and transmembrane domain-containing protein 2-like protein OS=Sus scrofa OX=9823 GN=VSTM2L PE=4 SV=1 CANONICAL=A0A5G2QZF5-1" }, "locus": { "chromosome": "17", "start_pos": 41018729, "end_pos": 40978794, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069867.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069867.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069518.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069518.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of neuron apoptotic process", "id": "GO:0043524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043524", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZF5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 203, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZF5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZF5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZF5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 157, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZG3-1", "uniprot_ac": "A0A5G2QZG3", "uniprot_id": "A0A5G2QZG3_PIG", "mass": { "chemical_mass": 43896.0, "monoisotopic_mass": 43896.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100525572", "type": "recommended", "evidence": [ { "id": "A0A5G2QZG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" } ] } ], "protein_names": [ { "name": "Ig-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100525572", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZG3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZG3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049524", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049524", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEQDCLGQSCDRWETGPTVGAGIIETPSEQLNGLPDVFSAAEQTGRQPVMGPYLEDPLLCWLLRFFSLLVSVYSSGTNGGGPAPGVQDSGAPDPLQGIRGGSVLFPLPKKQDAELEEVTWGFGPGSEYRVLLRVRPGEAPTWVSLQDRYQQRVHVPNMTSLKIENLTPEDSGLYRARVSFTGGVELTKVFHLTVYEPVTIPQILVHSSSITPGWCNVTMECRTSGDAEDLKVTWEGKGLPRELEERVTSGPTPNSWTLAVHLPQSQPYTNITCVVSNEVDQKTATFNLGEVCVHGSHGQAKAVALPGILGAGATVATLLLILGIGLCLWKKKKKKKKMETARGLQEESKDRDGGIQYVELSQQDSRESTDQGDGERRLNEKESLNTVYSEVHKPASVPMKII", "length": 403, "header": "tr|A0A5G2QZG3-1|A0A5G2QZG3_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525572 PE=1 SV=2 CANONICAL=A0A5G2QZG3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3/entry", "sequence": { "sequence": "MGEQDCLGQSCDRWETGPTVGAGIIETPSEQLNGLPDVFSAAEQTGRQPVMGPYLEDPLLCWLLRFFSLLVSVYSSGTNGGGPAPGVQDSGAPDPLQGIRGGSVLFPLPKKQDAELEEVTWGFGPGSEYRVLLRVRPGEAPTWVSLQDRYQQRVHVPNMTSLKIENLTPEDSGLYRARVSFTGGVELTKVFHLTVYEPVTIPQILVHSSSITPGWCNVTMECRTSGDAEDLKVTWEGKGLPRELEERVTSGPTPNSWTLAVHLPQSQPYTNITCVVSNEVDQKTATFNLGEVCVHGSHGQAKAVALPGILGAGATVATLLLILGIGLCLWKKKKKKKKMETARGLQEESKDRDGGIQYVELSQQDSRESTDQGDGERRLNEKESLNTVYSEVHKPASVPMKII", "length": 403, "header": "tr|A0A5G2QZG3-1|A0A5G2QZG3_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525572 PE=1 SV=2 CANONICAL=A0A5G2QZG3-1" }, "locus": { "chromosome": "4", "start_pos": 92791277, "end_pos": 92780081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076627.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076627.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067338.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067338.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 19, "start_aa": "Thr", "end_pos": 19, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 253, "start_aa": "Thr", "end_pos": 253, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr253", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZG3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 403, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZG3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZG3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG3" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 286, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 19, 253 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 166, "end_pos": 168 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 271, "end_pos": 273 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZG6-1", "uniprot_ac": "A0A5G2QZG6", "uniprot_id": "A0A5G2QZG6_PIG", "mass": { "chemical_mass": 34237.0, "monoisotopic_mass": 34237.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QZG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QZG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZG6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZG6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKRQKKKKKILPTHKSPGPDGFTGEFYQTYKKELIPILLTLFQEVEEEGTFPKTFYDATITLIPKPDKGTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHNQVGFIPGAQGWFNIRKSINVIHHINKRKVKNHMIISIDAEKASDKVQHPFMIKTLTKVGIEGRYLNIIKAVYDKPTANIILNGEKLKAFPLKSGTRQGYSHSPLLFNIVLEVLATAIRQTKEIKGIQRGREEVKLSLYADDMILYIENPKDSTQKLLELINKFGKVAEYKINIQKSVAFLYTNKEILEKE", "length": 298, "header": "tr|A0A5G2QZG6-1|A0A5G2QZG6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZG6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6/entry", "sequence": { "sequence": "MAKRQKKKKKILPTHKSPGPDGFTGEFYQTYKKELIPILLTLFQEVEEEGTFPKTFYDATITLIPKPDKGTTKKENYRPISLMNIDAKILNKILANRIQQHIKKIIHNQVGFIPGAQGWFNIRKSINVIHHINKRKVKNHMIISIDAEKASDKVQHPFMIKTLTKVGIEGRYLNIIKAVYDKPTANIILNGEKLKAFPLKSGTRQGYSHSPLLFNIVLEVLATAIRQTKEIKGIQRGREEVKLSLYADDMILYIENPKDSTQKLLELINKFGKVAEYKINIQKSVAFLYTNKEILEKE", "length": 298, "header": "tr|A0A5G2QZG6-1|A0A5G2QZG6_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZG6-1" }, "locus": { "chromosome": "5", "start_pos": 79572445, "end_pos": 79571552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070014.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070014.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063630.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063630.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZG6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 298, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZG6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZG6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG6" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 298, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZJ0-1", "uniprot_ac": "A0A5G2QZJ0", "uniprot_id": "A0A5G2QZJ0_PIG", "mass": { "chemical_mass": 16649.0, "monoisotopic_mass": 16649.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZJ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIGVHVSFPRKVLSGYMPKSEISGSYGSSTFSFLRYLHTVLHSGFTSLHSHQQCRGVPFSPHPLQHLLFVDLLMMAILTGMRWHLILVLMCISLIISDVEHLFMCLLAICVSSSFCCPFRATPTAYGSSQARGTIGPVAASICQRSELCL", "length": 151, "header": "tr|A0A5G2QZJ0-1|A0A5G2QZJ0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZJ0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0/entry", "sequence": { "sequence": "MNIGVHVSFPRKVLSGYMPKSEISGSYGSSTFSFLRYLHTVLHSGFTSLHSHQQCRGVPFSPHPLQHLLFVDLLMMAILTGMRWHLILVLMCISLIISDVEHLFMCLLAICVSSSFCCPFRATPTAYGSSQARGTIGPVAASICQRSELCL", "length": 151, "header": "tr|A0A5G2QZJ0-1|A0A5G2QZJ0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZJ0-1" }, "locus": { "chromosome": "X", "start_pos": 76113381, "end_pos": 76112929, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088935.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088935.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070308.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070308.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZJ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 151, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZJ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZJ6-1", "uniprot_ac": "A0A5G2QZJ6", "uniprot_id": "A0A5G2QZJ6_PIG", "mass": { "chemical_mass": 25596.0, "monoisotopic_mass": 25596.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "LINE-1 retrotransposable element ORF1 protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6/entry#names_and_taxonomy" } ] }, { "name": "LINE retrotransposable element 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6/entry#names_and_taxonomy" } ] }, { "name": "LINE1 retrotransposable element 1", "type": "synonym", "evidence": [ { "id": "A0A5G2QZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Nucleic acid-binding protein which is essential for retrotransposition of LINE-1 elements in the genome. Functions as a nucleic acid chaperone binding its own transcript and therefore preferentially mobilizing the transcript from which they are encoded.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6#function" }, { "database": "UniProtKB", "id": "ARBA00060281", "url": "https://www.uniprot.org/uniprotkb/ARBA00060281#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZJ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044997", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044997", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MREKGKNPENQLSDQEILSLREKDFRLLMLKMMQDIGNKLEAKMDNLQKTLSKEIQDIKVKQEEMQNTTTEIKNSLEAANSRIQEAEERISKVEDRLVEITDAEQKREKRRKRNEESLRELWDNVKHTNIRIIGVPEGEEREKGTEKIFQEIIAKNCPHMGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKQKISKAAREKKEHTREPQ", "length": 216, "header": "tr|A0A5G2QZJ6-1|A0A5G2QZJ6_PIG Isoform 1 of LINE-1 retrotransposable element ORF1 protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QZJ6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6/entry", "sequence": { "sequence": "MREKGKNPENQLSDQEILSLREKDFRLLMLKMMQDIGNKLEAKMDNLQKTLSKEIQDIKVKQEEMQNTTTEIKNSLEAANSRIQEAEERISKVEDRLVEITDAEQKREKRRKRNEESLRELWDNVKHTNIRIIGVPEGEEREKGTEKIFQEIIAKNCPHMGKEPLTQIQEAQRVPYKINPRRNTPRHILIKLTKIKDKQKISKAAREKKEHTREPQ", "length": 216, "header": "tr|A0A5G2QZJ6-1|A0A5G2QZJ6_PIG Isoform 1 of LINE-1 retrotransposable element ORF1 protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2QZJ6-1" }, "locus": { "chromosome": "15", "start_pos": 96372580, "end_pos": 96371933, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070778.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070778.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063665.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063665.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 216, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZJ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 211, "start_aa": "Thr", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2QZJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ6" }, { "id": "PF17489", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element trimerization", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 123, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZJ7-1", "uniprot_ac": "A0A5G2QZJ7", "uniprot_id": "A0A5G2QZJ7_PIG", "mass": { "chemical_mass": 115843.0, "monoisotopic_mass": 115843.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QZJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QZJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZJ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047166", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047166", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENAEIKPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKSNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 989, "header": "tr|A0A5G2QZJ7-1|A0A5G2QZJ7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QZJ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7/entry", "sequence": { "sequence": "MDRSSRQKTNKATEILKETIEKLDLIDIFRTLHPKKAEYTFFSNAHGTFSRIDHILGHKANLNKFRSIEIISSIFSDHNSWFFEKVNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYRPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENAEIKPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAVCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKSNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYHLTPVRMAIINKSTNNKCWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTRMFIAALFTIARTWKQSKCPSTEDWIRKMWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 989, "header": "tr|A0A5G2QZJ7-1|A0A5G2QZJ7_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2QZJ7-1" }, "locus": { "chromosome": "X", "start_pos": 24242277, "end_pos": 24238915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083659.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083659.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069558.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069558.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 839, "end_pos": 841, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 989, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZJ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZJ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZJ7" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 489, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 839, "end_pos": 841 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZM2-1", "uniprot_ac": "A0A5G2QZM2", "uniprot_id": "A0A5G2QZM2_PIG", "mass": { "chemical_mass": 13861.0, "monoisotopic_mass": 13861.0 }, "refseq": {}, "gene_names": [ { "name": "SMIM33", "type": "recommended", "evidence": [ { "id": "A0A5G2QZM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 33", "type": "synonym", "evidence": [ { "id": "A0A5G2QZM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMIM33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2", "locus": { "chromosome": "2", "start_pos": 141355996, "end_pos": 141353928, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000042105", "url": "https://www.ensembl.org/id/ENSSSCG00000042105" } ] } } ], "crossref": [ { "id": "A0A5G2QZM2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042105", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042105", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR038803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038803", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37873", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37873", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37873:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37873:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QZM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQDGHHPWLSPAVNGSAGQEPQRQVPKVLDGAWEPPPGAGLPLLTVIVAVFVLLAVCIVVTVHFGPSLHKGHVSLATEPPSPKPEGGIYLVHWRVLGPGRHEDTQQGPPVPGSCPGPDGPRFSVDEITFL", "length": 131, "header": "tr|A0A5G2QZM2-1|A0A5G2QZM2_PIG Isoform 1 of Small integral membrane protein 33 OS=Sus scrofa OX=9823 GN=SMIM33 PE=4 SV=1 CANONICAL=A0A5G2QZM2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2/entry", "sequence": { "sequence": "MQQDGHHPWLSPAVNGSAGQEPQRQVPKVLDGAWEPPPGAGLPLLTVIVAVFVLLAVCIVVTVHFGPSLHKGHVSLATEPPSPKPEGGIYLVHWRVLGPGRHEDTQQGPPVPGSCPGPDGPRFSVDEITFL", "length": 131, "header": "tr|A0A5G2QZM2-1|A0A5G2QZM2_PIG Isoform 1 of Small integral membrane protein 33 OS=Sus scrofa OX=9823 GN=SMIM33 PE=4 SV=1 CANONICAL=A0A5G2QZM2-1" }, "locus": { "chromosome": "2", "start_pos": 141355993, "end_pos": 141354053, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070945.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070945.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070343.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070343.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZM2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZM5-1", "uniprot_ac": "A0A5G2QZM5", "uniprot_id": "A0A5G2QZM5_PIG", "mass": { "chemical_mass": 13443.0, "monoisotopic_mass": 13443.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042052", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042052", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSGIAESYGSSIFSFLRNLHTIFHSGCTNVHSYQKYTKRDPFSLHPLQHLFVDFLMMAFLASVRWYFIVVLICTSLIISDVGHLFMCFLAIHMSSLENCLFRSFAHFFIGLFGY", "length": 116, "header": "tr|A0A5G2QZM5-1|A0A5G2QZM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZM5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5/entry", "sequence": { "sequence": "MPRSGIAESYGSSIFSFLRNLHTIFHSGCTNVHSYQKYTKRDPFSLHPLQHLFVDFLMMAFLASVRWYFIVVLICTSLIISDVGHLFMCFLAIHMSSLENCLFRSFAHFFIGLFGY", "length": 116, "header": "tr|A0A5G2QZM5-1|A0A5G2QZM5_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZM5-1" }, "locus": { "chromosome": "X", "start_pos": 117244672, "end_pos": 117244325, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085735.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085735.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063695.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063695.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZM5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 116, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZM5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZP3-1", "uniprot_ac": "A0A5G2QZP3", "uniprot_id": "A0A5G2QZP3_PIG", "mass": { "chemical_mass": 25313.0, "monoisotopic_mass": 25313.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2QZP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2QZP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050771", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050771", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKFLEKYNLPRLNQEEIEKMNGPITRTEVETVMKKLPTNKSPGPDGFTGKFYQTFREELTPLLLKLFQKIAEEGILPNAFSEATITLIPKPDKDTTKKGNYWPSSLMNIDAKILNKILANRIQQYIKRIVHGDQVGFIPGMQGFFNIRKSISVIHHMNKLKNQSPMSLSIDTEKAFGKLQHPFLIKTLQKVGIEGTYLNMIKAICDKPTAHIIPNGEKLIF", "length": 222, "header": "tr|A0A5G2QZP3-1|A0A5G2QZP3_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZP3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3/entry", "sequence": { "sequence": "MDKFLEKYNLPRLNQEEIEKMNGPITRTEVETVMKKLPTNKSPGPDGFTGKFYQTFREELTPLLLKLFQKIAEEGILPNAFSEATITLIPKPDKDTTKKGNYWPSSLMNIDAKILNKILANRIQQYIKRIVHGDQVGFIPGMQGFFNIRKSISVIHHMNKLKNQSPMSLSIDTEKAFGKLQHPFLIKTLQKVGIEGTYLNMIKAICDKPTAHIIPNGEKLIF", "length": 222, "header": "tr|A0A5G2QZP3-1|A0A5G2QZP3_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZP3-1" }, "locus": { "chromosome": "12", "start_pos": 56435607, "end_pos": 56434942, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078060.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078060.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067418.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067418.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZP3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 222, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZP3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZP3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP3" }, { "id": "PF00078", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 203, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZQ0-1", "uniprot_ac": "A0A5G2QZQ0", "uniprot_id": "A0A5G2QZQ0_PIG", "mass": { "chemical_mass": 35983.0, "monoisotopic_mass": 35983.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "DDE-1 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2QZQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZQ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047099", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047099", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKASGFKSFQDYATLLLCTNAKGDFNCKPLMVYRAPSSQAFKGKSVNHMPVHWRWNKKAWMTSDWFQSCFIPEVEYYLQDRNLAFKILFILDNVPVHCCEELTNAHPNVEVLFLPPNATSLIQPLDQGIIKAFKAHYTRELYSKAFEALKANKESTVMDYWKSVTIHNVIDYVGTAWDNIKRAAINNCWKNVWLDCVENFEGFEGVTESIKNSVKNIMPIAWQISGEGFDDMREEDVGEIKNPPMKTWTRWQNKALESMITKTAMKVSLRVQELSLLQRPKYQNGTLPWENYSMTWKCVTLCSIAASTLSA", "length": 313, "header": "tr|A0A5G2QZQ0-1|A0A5G2QZQ0_PIG Isoform 1 of DDE-1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZQ0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0/entry", "sequence": { "sequence": "MASKASGFKSFQDYATLLLCTNAKGDFNCKPLMVYRAPSSQAFKGKSVNHMPVHWRWNKKAWMTSDWFQSCFIPEVEYYLQDRNLAFKILFILDNVPVHCCEELTNAHPNVEVLFLPPNATSLIQPLDQGIIKAFKAHYTRELYSKAFEALKANKESTVMDYWKSVTIHNVIDYVGTAWDNIKRAAINNCWKNVWLDCVENFEGFEGVTESIKNSVKNIMPIAWQISGEGFDDMREEDVGEIKNPPMKTWTRWQNKALESMITKTAMKVSLRVQELSLLQRPKYQNGTLPWENYSMTWKCVTLCSIAASTLSA", "length": 313, "header": "tr|A0A5G2QZQ0-1|A0A5G2QZQ0_PIG Isoform 1 of DDE-1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZQ0-1" }, "locus": { "chromosome": "6", "start_pos": 12222626, "end_pos": 12221688, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079061.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079061.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069609.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZQ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZQ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZQ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZQ0" }, { "id": "PF03184", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DDE-1", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 191, "start_aa": "Ala", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 286, "end_pos": 288 }, { "start_pos": 293, "end_pos": 295 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZR8-1", "uniprot_ac": "A0A5G2QZR8", "uniprot_id": "A0A5G2QZR8_PIG", "mass": { "chemical_mass": 21729.0, "monoisotopic_mass": 21729.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM223", "type": "recommended", "evidence": [ { "id": "A0A5G2QZR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ] } ], "protein_names": [ { "name": "Transmembrane protein 223", "type": "synonym", "evidence": [ { "id": "A0A5G2QZR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM223", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8", "locus": { "chromosome": "2", "start_pos": 8983263, "end_pos": 8981963, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038711", "url": "https://www.ensembl.org/id/ENSSSCG00000038711" } ] } } ], "crossref": [ { "id": "A0A5G2QZR8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038711", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038711", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PLEHISC", "url": "https://omabrowser.org/oma/group/PLEHISC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14549", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14549", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14549:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14549:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZMH2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPGARIPARLLLALQSRPARRALHDAAPPRDVLLFEHERGRFFAVLGLFCAGQGVFWASLAIAALTRPPAPARPPDTESPDRGRLDLRSALWRYGLALGCGTIGTLVLSAGLLSLRSVRSVMLRAGGKQVTLTTHAPFGLGAHFTVPLNQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKAGHFPNTKLFDITVGAYRSL", "length": 201, "header": "tr|A0A5G2QZR8-1|A0A5G2QZR8_PIG Isoform 1 of Transmembrane protein 223 OS=Sus scrofa OX=9823 GN=TMEM223 PE=4 SV=1 CANONICAL=A0A5G2QZR8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMH2/entry", "sequence": { "sequence": "MAAPGARIPARLLLALQSRPARRALHDAAPPRDVLLFEHERGRFFAVLGLFCAGQGVFWASLAIAALTRPPAPARPPDTESPDRGRLDLRSALWRYGLALGCGTIVMLRAGGKQVTLTTHAPFGLGAHFTVPLNQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKAGHFPNTKLFDITVGAYRSL", "length": 184, "header": "tr|A0A286ZMH2-1|A0A286ZMH2_PIG Computationally mapped isoform of Transmembrane protein 223 OS=Sus scrofa OX=9823 GN=TMEM223 PE=4 SV=1 CANONICAL=A0A5G2QZR8-1" }, "locus": { "chromosome": "2", "start_pos": 8983126, "end_pos": 8982162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063185.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063185.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032774.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032774.1" } ] } }, { "isoform_ac": "A0A5G2QZR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8/entry", "sequence": { "sequence": "MAAPGARIPARLLLALQSRPARRALHDAAPPRDVLLFEHERGRFFAVLGLFCAGQGVFWASLAIAALTRPPAPARPPDTESPDRGRLDLRSALWRYGLALGCGTIGTLVLSAGLLSLRSVRSVMLRAGGKQVTLTTHAPFGLGAHFTVPLNQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKAGHFPNTKLFDITVGAYRSL", "length": 201, "header": "tr|A0A5G2QZR8-1|A0A5G2QZR8_PIG Isoform 1 of Transmembrane protein 223 OS=Sus scrofa OX=9823 GN=TMEM223 PE=4 SV=1 CANONICAL=A0A5G2QZR8-1" }, "locus": { "chromosome": "2", "start_pos": 8983126, "end_pos": 8982162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075526.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075526.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067443.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067443.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex IV assembly", "id": "GO:0033617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033617", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mitochondrial ribosome binding", "id": "GO:0097177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097177", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 201, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZR8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZS2-1", "uniprot_ac": "A0A5G2QZS2", "uniprot_id": "A0A5G2QZS2_PIG", "mass": { "chemical_mass": 6790.0, "monoisotopic_mass": 6790.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZS2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045434", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045434", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "APEVCPIPACHQQHPSSRMSLLFLIPRWPYLGNLEKVKEAPLFSTILWNSSGKFGGGKKIL", "length": 61, "header": "tr|A0A5G2QZS2-1|A0A5G2QZS2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZS2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2/entry", "sequence": { "sequence": "APEVCPIPACHQQHPSSRMSLLFLIPRWPYLGNLEKVKEAPLFSTILWNSSGKFGGGKKIL", "length": 61, "header": "tr|A0A5G2QZS2-1|A0A5G2QZS2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZS2-1" }, "locus": { "chromosome": "16", "start_pos": 23491218, "end_pos": 23489933, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088128.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088128.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069629.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069629.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 61, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZS2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZS7-1", "uniprot_ac": "A0A5G2QZS7", "uniprot_id": "A0A5G2QZS7_PIG", "mass": { "chemical_mass": 8850.0, "monoisotopic_mass": 8850.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZS7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PTFLWGSHICRHMLILEMISKPPGHFESGLSDIKCHGILRIKPLMSSLLVTVPLVNFCHSMSVKETTNIMCKIRFLTI", "length": 78, "header": "tr|A0A5G2QZS7-1|A0A5G2QZS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZS7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7/entry", "sequence": { "sequence": "PTFLWGSHICRHMLILEMISKPPGHFESGLSDIKCHGILRIKPLMSSLLVTVPLVNFCHSMSVKETTNIMCKIRFLTI", "length": 78, "header": "tr|A0A5G2QZS7-1|A0A5G2QZS7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZS7-1" }, "locus": { "chromosome": "1", "start_pos": 56467230, "end_pos": 56466754, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067192.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067192.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063755.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063755.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZS7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 78, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZS7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZS7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZY4-1", "uniprot_ac": "A0A5G2QZY4", "uniprot_id": "A0A5G2QZY4_PIG", "mass": { "chemical_mass": 10892.0, "monoisotopic_mass": 10892.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZY4", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042058", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042058", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QZY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IANEQSLKVIRRRAAIFWKPGASFSIEEIEVALAKAKEVRIKEKKITTFPHQNSERFTVNYMFFSQCSVQKENYTCCYFFFTTCFHPSLNPAK", "length": 93, "header": "tr|A0A5G2QZY4-1|A0A5G2QZY4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZY4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4/entry", "sequence": { "sequence": "IANEQSLKVIRRRAAIFWKPGASFSIEEIEVALAKAKEVRIKEKKITTFPHQNSERFTVNYMFFSQCSVQKENYTCCYFFFTTCFHPSLNPAK", "length": 93, "header": "tr|A0A5G2QZY4-1|A0A5G2QZY4_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZY4-1" }, "locus": { "chromosome": "8", "start_pos": 121172530, "end_pos": 121171669, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071407.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071407.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063815.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063815.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZY4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 93, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZY4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZZ7-1", "uniprot_ac": "A0A5G2QZZ7", "uniprot_id": "A0A5G2QZZ7_PIG", "mass": { "chemical_mass": 13515.0, "monoisotopic_mass": 13515.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2QZZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7", "locus": {} } ], "crossref": [ { "id": "A0A5G2QZZ7", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042445", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042445", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2QZZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIDWSYGSSLYSFLRCLHTVLHSACTNLHSHQQCRRVPFSPHPLQHSLFVDFLMMAILTGVRCYLMVVLICISLIISDVEHFCMCLLAICTSSLENSLFRFFAHSSIGFLAFFCC", "length": 119, "header": "tr|A0A5G2QZZ7-1|A0A5G2QZZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZZ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7/entry", "sequence": { "sequence": "MPKSGIDWSYGSSLYSFLRCLHTVLHSACTNLHSHQQCRRVPFSPHPLQHSLFVDFLMMAILTGVRCYLMVVLICISLIISDVEHFCMCLLAICTSSLENSLFRFFAHSSIGFLAFFCC", "length": 119, "header": "tr|A0A5G2QZZ7-1|A0A5G2QZZ7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2QZZ7-1" }, "locus": { "chromosome": "17", "start_pos": 6048627, "end_pos": 6048271, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076533.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076533.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070474.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070474.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 119, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2QZZ9-1", "uniprot_ac": "A0A5G2QZZ9", "uniprot_id": "A0A5G2QZZ9_PIG", "mass": { "chemical_mass": 36694.0, "monoisotopic_mass": 36694.0 }, "refseq": {}, "gene_names": [ { "name": "SRRD", "type": "recommended", "evidence": [ { "id": "A0A5G2QZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ] } ], "protein_names": [ { "name": "SRR1 domain containing", "type": "synonym", "evidence": [ { "id": "A0A5G2QZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRRD", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9", "locus": { "chromosome": "14", "start_pos": 44096954, "end_pos": 44073638, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000050530", "url": "https://www.ensembl.org/id/ENSSSCG00000050530" } ] } } ], "crossref": [ { "id": "A0A5G2QZZ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050530", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050530", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR012942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28626", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28626", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28626:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28626:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAALESWQEASPRRRRSATRRPRRRVAAAVARSLRADPEVDSGVVLRRIREAGEDLLISDFWSLALETIKRCLRKHLEQLKAPVGTLSEAFASLHLDPSPDESDVAPGSISEETLVGACHLKCVCYGIGNFATCVIARNQLAFLLLFLEKCQIPRSHCWIYDPLFSQIEITVLNTLGVVVLSENEEGKRSVCGEPTVFYMLHCGTALYNNLLWSNWSVEALSKLVIIGNSFRGLEERLLTRILQKNYLYVAKILEGLEELAFPQTSQYVDVFNDTSIHWFPVQKLTQLSMDTWAFREEPDYEDCEDLEIIRNKTEEPSATD", "length": 325, "header": "tr|A0A5G2QZZ9-1|A0A5G2QZZ9_PIG Isoform 1 of SRR1 domain containing OS=Sus scrofa OX=9823 GN=SRRD PE=3 SV=1 CANONICAL=A0A5G2QZZ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9/entry", "sequence": { "sequence": "MAAAAAALESWQEASPRRRRSATRRPRRRVAAAVARSLRADPEVDSGVVLRRIREAGEDLLISDFWSLALETIKRCLRKHLEQLKAPVGTLSEAFASLHLDPSPDESDVAPGSISEETLVGACHLKCVCYGIGNFATCVIARNQLAFLLLFLEKCQIPRSHCWIYDPLFSQIEITVLNTLGVVVLSENEEGKRSVCGEPTVFYMLHCGTALYNNLLWSNWSVEALSKLVIIGNSFRGLEERLLTRILQKNYLYVAKILEGLEELAFPQTSQYVDVFNDTSIHWFPVQKLTQLSMDTWAFREEPDYEDCEDLEIIRNKTEEPSATD", "length": 325, "header": "tr|A0A5G2QZZ9-1|A0A5G2QZZ9_PIG Isoform 1 of SRR1 domain containing OS=Sus scrofa OX=9823 GN=SRRD PE=3 SV=1 CANONICAL=A0A5G2QZZ9-1" }, "locus": { "chromosome": "14", "start_pos": 44096951, "end_pos": 44073667, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080656.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080656.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063830.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "pmid": "" }, { "name": "regulation of heme biosynthetic process", "id": "GO:0070453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070453", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2QZZ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 325, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2QZZ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2QZZ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2QZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZZ9" }, { "id": "PF07985", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07985" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRR1-like", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 283, "start_aa": "Lys", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 219, "end_pos": 221 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 316, "end_pos": 318 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R000-1", "uniprot_ac": "A0A5G2R000", "uniprot_id": "A0A5G2R000_PIG", "mass": { "chemical_mass": 49368.0, "monoisotopic_mass": 49368.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Zinc finger protein 671", "type": "recommended", "evidence": [ { "id": "A0A5G2R000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000", "locus": {} } ], "crossref": [ { "id": "A0A5G2R000", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R000", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049941", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049941", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R000-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALAVPLWQGCVISEGVFVYFSLEEWKLLDEAQRRLYRDVMLENLALLASLGIASSRSHLVMQLQQGGGPWIPTQVAVTPAGGKASPEPRTCEACGKPFWFSADLHRHQKQQSGEKFFRTDEGRDSVKSCRTSVPDKTCIHGESRMDLPATSGLHHWVPHSRIKPHKNTEFGETLSAGQKHHKCSECGKVFTRKDTLARHQRIHTGERPYECSKCGKFFSQSCDLFKHQTIHTGERPYECNECGKFFRQISGLIEHRRVHTGERLYQCSNCGKFFSSKSNLIRHQEVHTGARPYVCNECGKEFNRKHTLILHQRTHTGERPYECSECGKCFSQSSHLNVHWRIHSSDYECSRCGKAFSCISKLVQHQKVHSGEKPYECSKCGKAFTQRPNLIRHWKVHTGERPYVCSDCGKEFNRKHTLVLHQRIHIGEKP", "length": 431, "header": "tr|A0A5G2R000-1|A0A5G2R000_PIG Isoform 1 of Zinc finger protein 671 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2R000-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R000-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000/entry", "sequence": { "sequence": "MALAVPLWQGCVISEGVFVYFSLEEWKLLDEAQRRLYRDVMLENLALLASLGIASSRSHLVMQLQQGGGPWIPTQVAVTPAGGKASPEPRTCEACGKPFWFSADLHRHQKQQSGEKFFRTDEGRDSVKSCRTSVPDKTCIHGESRMDLPATSGLHHWVPHSRIKPHKNTEFGETLSAGQKHHKCSECGKVFTRKDTLARHQRIHTGERPYECSKCGKFFSQSCDLFKHQTIHTGERPYECNECGKFFRQISGLIEHRRVHTGERLYQCSNCGKFFSSKSNLIRHQEVHTGARPYVCNECGKEFNRKHTLILHQRTHTGERPYECSECGKCFSQSSHLNVHWRIHSSDYECSRCGKAFSCISKLVQHQKVHSGEKPYECSKCGKAFTQRPNLIRHWKVHTGERPYVCSDCGKEFNRKHTLVLHQRIHIGEKP", "length": 431, "header": "tr|A0A5G2R000-1|A0A5G2R000_PIG Isoform 1 of Zinc finger protein 671 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A5G2R000-1" }, "locus": { "chromosome": "6", "start_pos": 62508584, "end_pos": 62505648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070545.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070545.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069714.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069714.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R000", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R000-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 431, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R000-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R000" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 117, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R000" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 83, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 79 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R009-1", "uniprot_ac": "A0A5G2R009", "uniprot_id": "A0A5G2R009_PIG", "mass": { "chemical_mass": 92003.0, "monoisotopic_mass": 92003.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2R009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2R009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R009", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009", "locus": {} } ], "crossref": [ { "id": "A0A5G2R009", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R009", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046085", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046085", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R009", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R009-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGYTQPAGWGRERSVPVTEVAIRKRSQIDNLTLHLNELEKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKNNKTKSWFFEKRNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQVETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTHKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYHPISLMNIDAKILNKILANRIQQHTKKIIHHDQVGFIPGSQGWFNIRKSISIIHHINKKKGKNHMIISIDGEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPFSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYIENPKDSTQKLPELINKFSKVAGYKMNIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKINLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWTGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNKRPRIAKAILRNKNQAGGIALPDFKKYYKTTVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQFIFDKGGKNIKWEKESLFSKHCWETWTATCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSDQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKTVSNDATDKGLISRIYKQLIQPNSKKPINQWKNGQKT", "length": 788, "header": "tr|A0A5G2R009-1|A0A5G2R009_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R009-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R009-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009/entry", "sequence": { "sequence": "MRGYTQPAGWGRERSVPVTEVAIRKRSQIDNLTLHLNELEKEEQKSPKVSRRKEIIKIKEEINKIETQKTIEKNNKTKSWFFEKRNKIDKPLARLTKKRRERTQITKIINEKGEITTDTAEIQKTIREYYEQLYGNKFDNLEEMDNFLESYSLPKLNQVETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTHKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPDRDTTKKENYHPISLMNIDAKILNKILANRIQQHTKKIIHHDQVGFIPGSQGWFNIRKSISIIHHINKKKGKNHMIISIDGEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPFSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYIENPKDSTQKLPELINKFSKVAGYKMNIQKSVAFLYTSNETLEKEYKNTIPFKIVPHKINLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWTGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNKRPRIAKAILRNKNQAGGIALPDFKKYYKTTVIKTVWYWYQNRQTDQWNRIENPEINPDTYGQFIFDKGGKNIKWEKESLFSKHCWETWTATCKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSDQSPKAIEIRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKTVSNDATDKGLISRIYKQLIQPNSKKPINQWKNGQKT", "length": 788, "header": "tr|A0A5G2R009-1|A0A5G2R009_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R009-1" }, "locus": { "chromosome": "16", "start_pos": 48579633, "end_pos": 48577157, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082086.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082086.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063840.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R009", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R009", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R009-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 788, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R009-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R009" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R009" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 213, "end_pos": 476, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 461, "end_pos": 463 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R045-1", "uniprot_ac": "A0A5G2R045", "uniprot_id": "A0A5G2R045_PIG", "mass": { "chemical_mass": 8288.0, "monoisotopic_mass": 8288.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R045", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R045", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045", "locus": {} } ], "crossref": [ { "id": "A0A5G2R045", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R045", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048990", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048990", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R045", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R045-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFSRHHGCHSGLPDDPLAGSAHWSFSLWLRGPAQGEGATLQPRPMAMNFQENVTLAMAVFTILASIYFFNKAQQ", "length": 75, "header": "tr|A0A5G2R045-1|A0A5G2R045_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R045-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R045-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045/entry", "sequence": { "sequence": "MPFSRHHGCHSGLPDDPLAGSAHWSFSLWLRGPAQGEGATLQPRPMAMNFQENVTLAMAVFTILASIYFFNKAQQ", "length": 75, "header": "tr|A0A5G2R045-1|A0A5G2R045_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R045-1" }, "locus": { "chromosome": "6", "start_pos": 55535060, "end_pos": 55534648, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079581.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079581.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070519.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070519.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R045", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R045" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R045-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 75, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R045-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R045" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R063-1", "uniprot_ac": "A0A5G2R063", "uniprot_id": "A0A5G2R063_PIG", "mass": { "chemical_mass": 92642.0, "monoisotopic_mass": 92642.0 }, "refseq": { "ac": "XP_020933149", "name": "zinc finger protein 341 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933149" }, "gene_names": [ { "name": "ZNF341", "type": "recommended", "evidence": [ { "id": "A0A5G2R063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ] }, { "name": "ZNF341", "type": "synonym", "evidence": [ { "id": "XP_020933149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933149" } ] } ], "protein_names": [ { "name": "Zinc finger protein 341", "type": "synonym", "evidence": [ { "id": "A0A5G2R063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 341 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020933149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933149" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF341", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063", "locus": { "chromosome": "17", "start_pos": 37280118, "end_pos": 37224048, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021769", "url": "https://www.ensembl.org/id/ENSSSCG00000021769" } ] } } ], "crossref": [ { "id": "A0A5G2R063", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R063", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021769", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021769", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156678", "url": "https://www.ncbi.nlm.nih.gov/gene/100156678", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF70", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF70", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933149", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933149", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R063-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6E8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L890", "url": "https://www.uniprot.org/uniprotkb/I3L890", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L890-1", "url": "https://www.uniprot.org/uniprotkb/I3L890-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQTIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGSAPPLATVSLATNSIYTPSAAPTAVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQSSLNMHSAPSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSATAPLAGSGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPQVYSPGKQGFKPKGPNPTAPMTSATGGTVATFDSPPSLKTRRTKGSSGLPEAAGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTVSRNSVTVQVMALNPSRQEDEDSTGLGQTLSSAPQPQALPPAGEDAGDKLEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDSAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHLPTHGSGGRFKCQVCKKFFRREHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQARRPPRRRAVPRSGSSSGCKVVTPLPDPLGLEELKDAGAGPVPEAAPGKPPFSEPDAVLSIVVGGTVGGEPELVVPGHAEGLGSNLALAELQAGAEGPCAMLAVPVYIQASE", "length": 854, "header": "tr|A0A5G2R063-1|A0A5G2R063_PIG Isoform 1 of Zinc finger protein 341 OS=Sus scrofa OX=9823 GN=ZNF341 PE=4 SV=1 CANONICAL=A0A5G2R063-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R063-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063/entry", "sequence": { "sequence": "MAQTIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGSAPPLATVSLATNSIYTPSAAPTAVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQSSLNMHSAPSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSATAPLAGSGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPQVYSPGKQGFKPKGPNPTAPMTSATGGTVATFDSPPSLKTRRTKGSSGLPEAAGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTVSRNSVTVQVMALNPSRQEDEDSTGLGQTLSSAPQPQALPPAGEDAGDKLEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDSAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHLPTHGSGGRFKCQVCKKFFRREHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQARRPPRRRAVPRSGSSSGCKVVTPLPDPLGLEELKDAGAGPVPEAAPGKPPFSEPDAVLSIVVGGTVGGEPELVVPGHAEGLGSNLALAELQAGAEGPCAMLAVPVYIQASE", "length": 854, "header": "tr|A0A5G2R063-1|A0A5G2R063_PIG Isoform 1 of Zinc finger protein 341 OS=Sus scrofa OX=9823 GN=ZNF341 PE=4 SV=1 CANONICAL=A0A5G2R063-1" }, "locus": { "chromosome": "17", "start_pos": 37271562, "end_pos": 37224068, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072652.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072652.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070507.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070507.1" } ] } }, { "isoform_ac": "A0A5G2R6E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6E8/entry", "sequence": { "sequence": "MDANIVVALGIVSFGDRKTLRVSLCAFWELERKPLRIQGHGQLDAGGPQTQECFWRHEICIHRGMDNQTVLAVQSLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGSAPPLATVSLATNSIYTPSAAPTAVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQSSLNMHSAPSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSATAPLAGSGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPQVYSPGKQGFKPKGPNPTAPMTSATGGTVATFDSPPSLKTRRTKGSSGLPEAAGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTVSRNSVTVQVMALNPSRQEDEDSTGLGQTLSSAPQPQALPPAGEDAGDKLEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDSAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHLPTHGSGGRFKCQVCKKFFRREHYLKLHAHIHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFKKYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKGFSRHKYLKDHRCRLGPQKDKDLQARRPPRRRAVPRSGSSSGCKVVTPLPDPLGLEELKDAGAGPVPEAAPGKPPFSEPDAVLSIVVGGTVGGEPELVVPGHAEGLGSNLALAELQAGAEGPCAMLAVPVYIQASE", "length": 907, "header": "tr|A0A5G2R6E8-1|A0A5G2R6E8_PIG Computationally mapped isoform of Zinc finger protein 341 OS=Sus scrofa OX=9823 GN=ZNF341 PE=4 SV=1 CANONICAL=A0A5G2R063-1" }, "locus": { "chromosome": "17", "start_pos": 37271562, "end_pos": 37224908, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083384.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083384.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069701.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069701.1" } ] } }, { "isoform_ac": "I3L890-1", "url": "https://www.uniprot.org/uniprotkb/I3L890/entry", "sequence": { "sequence": "MAQTIFEALEGMDNQTVLAVQSLLDGQGAVPDPTGQSVNAPPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQGSAPPLATVSLATNSIYTPSAAPTAVQQAPPPANRQISTYITVPPSPLIQTLVQGNILVSDDVLMSAMSAFTSLDQPMPQGPPPVQSSLNMHSAPSYLTQPPPPPPPPPPLPPPPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSATAPLAGSGTVEIQALGMQPYPPLEVPNQCVEAPVYPTPQVYSPGKQGFKPKGPNPTAPMTSATGGTVATFDSPPSLKTRRTKGSSGLPEAAGKPKAQKLKCSYCDKSFTKNFDLQQHIRSHTGEKPFQCIACGRAFAQKSNVKKHMQTHKVWPPGRSGGTVSRNSVTVQVMALNPSRQEDEDSTGLGQTLSSAPQPQALPPAGEDAGDKLEAKQVVLIDSSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDSAVYKNAWSNWSCSCRPWPQQRRIWARSGPHL", "length": 568, "header": "tr|I3L890-1|I3L890_PIG Computationally mapped isoform of Zinc finger protein 341 OS=Sus scrofa OX=9823 GN=ZNF341 PE=4 SV=3 CANONICAL=A0A5G2R063-1" }, "locus": { "chromosome": "17", "start_pos": 37258755, "end_pos": 37224068, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023293.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023293.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020249.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020249.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity", "id": "GO:0001216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001216", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R063", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R063-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 854, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R063-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R063" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R063" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 81, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 260 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R090-1", "uniprot_ac": "A0A5G2R090", "uniprot_id": "A0A5G2R090_PIG", "mass": { "chemical_mass": 27593.0, "monoisotopic_mass": 27593.0 }, "refseq": {}, "gene_names": [ { "name": "PEX26", "type": "recommended", "evidence": [ { "id": "A0A5G2R090", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ] } ], "protein_names": [ { "name": "Peroxisomal biosis factor 26", "type": "synonym", "evidence": [ { "id": "A0A5G2R090", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEX26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090", "locus": { "chromosome": "5", "start_pos": 70142503, "end_pos": 70133024, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027190", "url": "https://www.ensembl.org/id/ENSSSCG00000027190" } ] } } ], "crossref": [ { "id": "A0A5G2R090", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R090", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027190", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027190", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517945", "url": "https://www.ncbi.nlm.nih.gov/gene/100517945", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517945", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517945", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QTCERAW", "url": "https://omabrowser.org/oma/group/QTCERAW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHQ6", "url": "https://www.orthodb.org/?gene=F1SHQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16262:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16262:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07163", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07163", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9033241", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9603798", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603798", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R090-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R397", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R397", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R397-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R397-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHQ6", "url": "https://www.uniprot.org/uniprotkb/F1SHQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSDPATSAAPLRGLGGPLRSSEPVRSSPAPSAAALLLEEAADLLVVHLDFAAALRTCERAWQGLAEEPAGASLEVKCSLCVVGIQALAEMDRWREVLSWVLQYYQIPEKLPPKVLELCVLLYSKMQEPGAMLDAVSTWLRDPDNQGLPEYRTLAELHLQRVLFPLGCLSEAEELVVGSAAFSEEQRLEALQAISVARQQQKHRHSGSEEAQKLNQEASPHSLPFLYKLAQIFHRIREAVSSLCQLPLHD", "length": 250, "header": "tr|A0A5G2R090-1|A0A5G2R090_PIG Isoform 1 of Peroxisomal biosis factor 26 OS=Sus scrofa OX=9823 GN=PEX26 PE=4 SV=1 CANONICAL=A0A5G2R090-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R090-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090/entry", "sequence": { "sequence": "MRSDPATSAAPLRGLGGPLRSSEPVRSSPAPSAAALLLEEAADLLVVHLDFAAALRTCERAWQGLAEEPAGASLEVKCSLCVVGIQALAEMDRWREVLSWVLQYYQIPEKLPPKVLELCVLLYSKMQEPGAMLDAVSTWLRDPDNQGLPEYRTLAELHLQRVLFPLGCLSEAEELVVGSAAFSEEQRLEALQAISVARQQQKHRHSGSEEAQKLNQEASPHSLPFLYKLAQIFHRIREAVSSLCQLPLHD", "length": 250, "header": "tr|A0A5G2R090-1|A0A5G2R090_PIG Isoform 1 of Peroxisomal biosis factor 26 OS=Sus scrofa OX=9823 GN=PEX26 PE=4 SV=1 CANONICAL=A0A5G2R090-1" }, "locus": { "chromosome": "5", "start_pos": 70140129, "end_pos": 70133636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082846.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082846.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070532.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070532.1" } ] } }, { "isoform_ac": "A0A5G2R397-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R397/entry", "sequence": { "sequence": "MRSDPATSAAPLRGLGGPLRSSEPVRSSPAPSAAALLLEEAADLLVVHLDFAAALRTCERAWQGLAEEPAGASLEVKCSLCVVGIQALAEMDRWREVLSWVLQYYQIPEKLPPKVLELCVLLYSKMQEPGAMLDAVSTWLRDPDNQGLPEYRTLAELHLQRVLFPLGCLSEAEELVVGSAAFSEEQRLEALQAISVARQQQKHRHSGSEEAQKLNQEGPSTHKFLSLLTLLRQLWDSAVSHFFSLPFRRSFLAALLLCLLVVRFDPVLQPHKHRSPEWGWQEAFGVSSARVPWPQAASQGSLVPCRGGAAGEESPWLVCS", "length": 320, "header": "tr|A0A5G2R397-1|A0A5G2R397_PIG Computationally mapped isoform of Peroxisomal biosis factor 26 OS=Sus scrofa OX=9823 GN=PEX26 PE=4 SV=1 CANONICAL=A0A5G2R090-1" }, "locus": { "chromosome": "5", "start_pos": 70139538, "end_pos": 70133636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069802.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069802.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068667.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068667.1" } ] } }, { "isoform_ac": "F1SHQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHQ6/entry", "sequence": { "sequence": "MRSDPATSAAPLRGLGGPLRSSEPVRSSPAPSAAALLLEEAADLLVVHLDFAAALRTCERAWQGLAEEPAGASLEVKCSLCVVGIQALAEMDRWREVLSWVLQYYQIPEKLPPKVLELCVLLYSKMQEPGAMLDAVSTWLRDPDNQGLPEYRTLAELHLQRVLFPLGCLSEAEELVVGSAAFSEEQRLEALQAISVARQQQKHRHSGSEEAQKLNQEGPSTHKFLSLLTLLRQLWDSAVSHFFSLPFRRSFLAALLLCLLVVRFDPASPHSLPFLYKLAQIFHRIREAVSSLCQLPLHD", "length": 299, "header": "tr|F1SHQ6-1|F1SHQ6_PIG Computationally mapped isoform of Peroxisomal biosis factor 26 OS=Sus scrofa OX=9823 GN=PEX26 PE=4 SV=2 CANONICAL=A0A5G2R090-1" }, "locus": { "chromosome": "5", "start_pos": 70140129, "end_pos": 70133636, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000835.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000835.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000819.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000819.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517945", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517945", "resource": "KEGG Pathway" }, { "id": "R-SSC-9033241", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "resource": "Reactome", "description": "Peroxisomal protein import" }, { "id": "R-SSC-9603798", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603798", "resource": "Reactome", "description": "Class I peroxisomal membrane protein import" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HQ82-1", "protein_name": "Peroxisome assembly protein 26", "gene_name": "Pex26", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKNDSSTSAAPMKGLVGPLRSSEPARALPAVPPAVYLLEEAADLLVVHLDFHAALETCERAWQSLAEEPTSGTVVEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKVLELCILLYSKMREPRAVLAMADAWLQDPDNQGLPEYGSLAELHLLRVLLPLGRLSEAEGLAVGSAAFSEEQREAVLQAICTARQQHTREHLSSQEQQQMSQEGSFSHKLMSLLRLLRRLWDAAASHLLSQPFKKSLLAALILCLLVLRFDPATPSSLPFLYQLAHLFRRIQKATLSRLYPLALRD", "length": 301 }, "evidence": [ { "id": "A0A5G2R090", "url": "https://omabrowser.org/oma/group/A0A5G2R090/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7Z412-1", "protein_name": "Peroxisome assembly protein 26", "gene_name": "PEX26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKSDSSTSAAPLRGLGGPLRSSEPVRAVPARAPAVDLLEEAADLLVVHLDFRAALETCERAWQSLANHAVAEEPAGTSLEVKCSLCVVGIQALAEMDRWQEVLSWVLQYYQVPEKLPPKVLELCILLYSKMQEPGAVLDVVGAWLQDPANQNLPEYGALAEFHVQRVLLPLGCLSEAEELVVGSAAFGEERRLDVLQAIHTARQQQKQEHSGSEEAQKPNLEGSVSHKFLSLPMLVRQLWDSAVSHFFSLPFKKSLLAALILCLLVVRFDPASPSSLHFLYKLAQLFRWIRKAAFSRLYQLRIRD", "length": 305 }, "evidence": [ { "id": "A0A5G2R090", "url": "https://omabrowser.org/oma/group/A0A5G2R090/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BGI5-1", "protein_name": "Peroxisome assembly protein 26", "gene_name": "Pex26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSDASTSAAPLKGLVGPLRSSEPALALPAVSPAVHLLEEASDLLVVHLDFHAALETCERAWQSLAEEPVSGTIVEVKCSLCVVGIQALAEMDRWREALSWVLRYYQVPEKLPPKVLELCILLYSKMKEPGAVLDVASAWLQDPDNQGLPDYGSLARLHVFRLLLPSGRLSEAEELAVRSAAFSEEQRVEALQAIHLARQQHTQEHTQEHSDSQEPQKLRQEGSFSQKLLSLLMLLRRLWGSVVSHLLSQPFRKGLLAALILCLLILRFDPAAPSSLPFLYQLTQLFRRIQKATLSRLYPLALRD", "length": 305 }, "evidence": [ { "id": "A0A5G2R090", "url": "https://omabrowser.org/oma/group/A0A5G2R090/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" }, { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" }, { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" }, { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043495", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein import into peroxisome membrane", "id": "GO:0045046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045046", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" }, { "name": "protein import into peroxisome matrix", "id": "GO:0016558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016558", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" }, { "name": "protein to membrane docking", "id": "GO:0022615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R090", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R090" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R090-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R090-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R090" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R093-1", "uniprot_ac": "A0A5G2R093", "uniprot_id": "A0A5G2R093_PIG", "mass": { "chemical_mass": 28151.0, "monoisotopic_mass": 28151.0 }, "refseq": { "ac": "XP_020956519", "name": "probable E3 SUMO-protein ligase RNF212 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956519" }, "gene_names": [ { "name": "RNF212", "type": "synonym", "evidence": [ { "id": "XP_020956519", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956519" } ] } ], "protein_names": [ { "name": "Probable E3 SUMO-protein ligase RNF212", "type": "recommended", "evidence": [ { "id": "A0A5G2R093", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093/entry#names_and_taxonomy" } ] }, { "name": "Probable E3 SUMO-protein transferase RNF212", "type": "synonym", "evidence": [ { "id": "A0A5G2R093", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 212", "type": "synonym", "evidence": [ { "id": "A0A5G2R093", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093/entry#names_and_taxonomy" } ] }, { "name": "probable E3 SUMO-protein ligase RNF212 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020956519", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956519" } ] } ], "function": [ { "annotation": "SUMO E3 ligase that acts as a regulator of crossing-over during meiosis: required to couple chromosome synapsis to the formation of crossover-specific recombination complexes. Localizes to recombination sites and stabilizes meiosis-specific recombination factors, such as MutS-gamma complex proteins (MSH4 and MSH5) and TEX11. May mediate sumoylation of target proteins MSH4 and/or MSH5, leading to enhance their binding to recombination sites. Acts as a limiting factor for crossover designation and/or reinforcement and plays an antagonist role with CCNB1IP1/HEI10 in the regulation of meiotic recombination.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093#function" }, { "database": "UniProtKB", "id": "ARBA00059057", "url": "https://www.uniprot.org/uniprotkb/ARBA00059057#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093", "locus": {} } ], "crossref": [ { "id": "A0A5G2R093", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R093", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045703", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045703", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16746", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16746", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110262032", "url": "https://www.ncbi.nlm.nih.gov/gene/110262032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22663:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22663:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14634", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14634", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956519", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956519", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R093-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPWVFCNRCFQPPHRALGFSLTSCGHVYCDVCLRSGKRDECLICQVPCRTVLLSKHTDSDIQAFFGGIDGLCRKYARDTSQVLEFQDKHRRRLFAFYAEKISSLEESLRESALQVEQLSRVRWSQQAAFSTIKDLVSTPAAQPSCLPPDASASERVESMEVDLSPSPRRKPEGAAGPARMSLLSPPRDGRMGSVARRPQHLGLPPRHPWQPQALRVPGLQTPSESPAPQAAGRAGTGAAPRQPLSISGLLQRRR", "length": 255, "header": "tr|A0A5G2R093-1|A0A5G2R093_PIG Isoform 1 of Probable E3 SUMO-protein ligase RNF212 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R093-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R093-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093/entry", "sequence": { "sequence": "MAPWVFCNRCFQPPHRALGFSLTSCGHVYCDVCLRSGKRDECLICQVPCRTVLLSKHTDSDIQAFFGGIDGLCRKYARDTSQVLEFQDKHRRRLFAFYAEKISSLEESLRESALQVEQLSRVRWSQQAAFSTIKDLVSTPAAQPSCLPPDASASERVESMEVDLSPSPRRKPEGAAGPARMSLLSPPRDGRMGSVARRPQHLGLPPRHPWQPQALRVPGLQTPSESPAPQAAGRAGTGAAPRQPLSISGLLQRRR", "length": 255, "header": "tr|A0A5G2R093-1|A0A5G2R093_PIG Isoform 1 of Probable E3 SUMO-protein ligase RNF212 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R093-1" }, "locus": { "chromosome": "8", "start_pos": 413874, "end_pos": 399843, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087964.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087964.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063930.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063930.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" }, { "name": "SUMO transferase activity", "id": "GO:0019789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019789", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "homologous chromosome pairing at meiosis", "id": "GO:0007129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007129", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" }, { "name": "meiotic gene conversion", "id": "GO:0006311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006311", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" }, { "name": "chiasma assembly", "id": "GO:0051026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051026", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R093", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R093-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 255, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R093-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R093" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R093", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R093" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 46, "start_aa": "Cys", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0A0-1", "uniprot_ac": "A0A5G2R0A0", "uniprot_id": "A0A5G2R0A0_PIG", "mass": { "chemical_mass": 20714.0, "monoisotopic_mass": 20714.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0A0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0A0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0A0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043146", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043146", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R0A0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKSGIAGSYGSSMHRFLRYLHTVLHSGCTSLHSHHQCRRVPFSPHPFQCLLFVDFFMMAILTGVRWYLMVVLICISLIIRDVDHCFTCLLAICISSLENGLFRSFGHFSIGWLAFLVLSCISCLYILEIRPLSVASFETIFSHSVSCLFVFFLVSFAVQKLLSLIRSDWFIFIFISVALGK", "length": 182, "header": "tr|A0A5G2R0A0-1|A0A5G2R0A0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0A0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0/entry", "sequence": { "sequence": "MPKSGIAGSYGSSMHRFLRYLHTVLHSGCTSLHSHHQCRRVPFSPHPFQCLLFVDFFMMAILTGVRWYLMVVLICISLIIRDVDHCFTCLLAICISSLENGLFRSFGHFSIGWLAFLVLSCISCLYILEIRPLSVASFETIFSHSVSCLFVFFLVSFAVQKLLSLIRSDWFIFIFISVALGK", "length": 182, "header": "tr|A0A5G2R0A0-1|A0A5G2R0A0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0A0-1" }, "locus": { "chromosome": "15", "start_pos": 132626282, "end_pos": 132626262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071571.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071571.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063935.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063935.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0A0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0A0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0A0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0A0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0A0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0D3-1", "uniprot_ac": "A0A5G2R0D3", "uniprot_id": "A0A5G2R0D3_PIG", "mass": { "chemical_mass": 23574.0, "monoisotopic_mass": 23574.0 }, "refseq": { "ac": "XP_003135377", "name": "A-kinase anchor protein 14 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135377" }, "gene_names": [ { "name": "AKAP14", "type": "synonym", "evidence": [ { "id": "XP_003135377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135377" } ] } ], "protein_names": [ { "name": "A-kinase anchor protein 14 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003135377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135377" } ] }, { "name": "A-kinase anchoring protein 14", "type": "synonym", "evidence": [ { "id": "A0A5G2R0D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0D3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0D3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047468", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047468", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512513", "url": "https://www.ncbi.nlm.nih.gov/gene/100512513", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512513", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512513", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R0D3", "url": "https://www.orthodb.org/?gene=A0A5G2R0D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35075", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35075", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35075:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35075:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003135377", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135377", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R0D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK64", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK64-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVKKSVRFREDVNVDKGSTSQMTDTKDTSDINELALALAKHAIDAAVKSVEEAEHPVKNINWITHGEFTAERGCKQIEEFVSKWEYQGRWVHYTEFLRREDVIHSFYYIYCVHWSIPTARIPIAQISAGVYFTIKINKNKPPDAPIDVSYVFESQRLVHRPGMTRFREKWLRDIIEAKHILIDPNIFQFNSIGIFQNILGF", "length": 202, "header": "tr|A0A5G2R0D3-1|A0A5G2R0D3_PIG Isoform 1 of A-kinase anchoring protein 14 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2R0D3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3/entry", "sequence": { "sequence": "MEVKKSVRFREDVNVDKGSTSQMTDTKDTSDINELALALAKHAIDAAVKSVEEAEHPVKNINWITHGEFTAERGCKQIEEFVSKWEYQGRWVHYTEFLRREDVIHSFYYIYCVHWSIPTARIPIAQISAGVYFTIKINKNKPPDAPIDVSYVFESQRLVHRPGMTRFREKWLRDIIEAKHILIDPNIFQFNSIGIFQNILGF", "length": 202, "header": "tr|A0A5G2R0D3-1|A0A5G2R0D3_PIG Isoform 1 of A-kinase anchoring protein 14 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2R0D3-1" }, "locus": { "chromosome": "X", "start_pos": 98252509, "end_pos": 98239645, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081103.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081103.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070609.1" } ] } }, { "isoform_ac": "A0A8W4FK64-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK64/entry", "sequence": { "sequence": "MEVKKSVRFREDVNVDKGSTSQMTDTKDTSDINELALALAKHAIDAAVKSVEAEHPVKNINWITHGEFTAERGCKQIEEFVSKWEYQGRWVHYTEFLRREDVIHSFYYIYCVHWSIPTARIPIAQISAGVYFTIKINKNKPPDAPIDVSYVFESQRLVHRPGMTRFREKWLRDIIEAKHILIDPNIFQFNSIGIFQNILGF", "length": 201, "header": "tr|A0A8W4FK64-1|A0A8W4FK64_PIG Computationally mapped isoform of A-kinase anchoring protein 14 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A5G2R0D3-1" }, "locus": { "chromosome": "X", "start_pos": 98252509, "end_pos": 98239645, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096028.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096028.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079617.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512513", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512513", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase A regulatory subunit binding", "id": "GO:0034237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034237", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cAMP-dependent protein kinase complex", "id": "GO:0005952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005952", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0D3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 202, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0D3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0D3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0E9-1", "uniprot_ac": "A0A5G2R0E9", "uniprot_id": "A0A5G2R0E9_PIG", "mass": { "chemical_mass": 15254.0, "monoisotopic_mass": 15254.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element dsRBD-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0E9", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0E9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNAYTCSPLAFSYTHTHTHTHITLPTSKITFEVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 131, "header": "tr|A0A5G2R0E9-1|A0A5G2R0E9_PIG Isoform 1 of L1 transposable element dsRBD-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0E9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9/entry", "sequence": { "sequence": "MSNAYTCSPLAFSYTHTHTHTHITLPTSKITFEVSDKERILKAAREKQNVTYKGTPIRISADFSTETLQARREWQEIFKVLKGKNMQPRILYPARISFKIEGEIKIFPNKQKLKEYSNTKPRLKEILKGLL", "length": 131, "header": "tr|A0A5G2R0E9-1|A0A5G2R0E9_PIG Isoform 1 of L1 transposable element dsRBD-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0E9-1" }, "locus": { "chromosome": "X", "start_pos": 14621193, "end_pos": 14620723, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083029.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083029.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070587.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070587.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0E9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0E9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0E9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0E9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 62, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0E9" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 128, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0F0-1", "uniprot_ac": "A0A5G2R0F0", "uniprot_id": "A0A5G2R0F0_PIG", "mass": { "chemical_mass": 228875.0, "monoisotopic_mass": 228875.0 }, "refseq": {}, "gene_names": [ { "name": "PRRC2A", "type": "recommended", "evidence": [ { "id": "A0A5G2R0F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ] } ], "protein_names": [ { "name": "Proline rich coiled-coil 2A", "type": "synonym", "evidence": [ { "id": "A0A5G2R0F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRRC2A", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0", "locus": { "chromosome": "7", "start_pos": 23756080, "end_pos": 23740255, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001409", "url": "https://www.ensembl.org/id/ENSSSCG00000001409" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001409", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001409", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TPHIWNH", "url": "https://omabrowser.org/oma/group/TPHIWNH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14038:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14038:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQS9", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQY7", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5US28", "url": "https://www.uniprot.org/uniprotkb/A0ABB5US28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5US28-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5US28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTF0", "url": "https://www.uniprot.org/uniprotkb/F1RTF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTF0-1", "url": "https://www.uniprot.org/uniprotkb/F1RTF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPGVAPAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPESPEEVPAPATPPAPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSAPPAPVPPSPPQPVTMGAVPAPQAAPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAAPLLRDRGTPPVDPKLAWVGDVFTTTATDSRPLTSPLRQATDEEDKGMRSETPPVPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPTGTDEAAKIQAPPPKKETPKEETPQLTGPEAGRKPTRGVGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPLATKVEELPPKPLEQGDETPKVPKPDTLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGVLTQVPLAPPPSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPLPPSKEPLKEKLLTGPLSPVARGGSSGGSNMGLGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLSLSTSAPGPEEALPTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTSKAVGTGGGGGGGGPGLSNMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKASSGGGNSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERAPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNGAAPGGHPRPKTGPSQTPQGPPPPRPPARYDPQRANSNSVTSDPHFEEPGPMVRGVGGTPQDSAGVNPFPPKRRERPPRKPELLQEESLPSSHTSGFLGPKPEGPGPQGESRDAGTEALSPHIWNRLHAAAGRKRYQPGSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAADGLPKRPGGPSPLNAVPGEGPPGSEPSEPPRRRPPAPHDGDRKELPREQPLPPGPIGTERLQRTDRGPEPSSLRSAHRPGPPVQFGTSDKDSDLCLVVGDSLKAEKELTASVTEAIPIARDWELLPSASASAEPQSKSLGSAHCGPEPSSSGQRLYPEVFYGSPGPPSSQVSGGIDSQLHPNNGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVAVKGQFLDFSALQAAELGKLPAGGVLFPPPSFLYSPAFCPSPLPDPPLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPAARVLPSPARPFGPSLGRAELHPVELKPFQDYRKLNSNLGGPGSSRTPPAGRSFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERTGPPSREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2164, "header": "tr|A0A5G2R0F0-1|A0A5G2R0F0_PIG Isoform 1 of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=1 CANONICAL=A0A5G2R0F0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPGVAPAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPESPEEVPAPATPPAPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSAPPAPVPPSPPQPVTMGAVPAPQAAPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAAPLLRDRGTPPVDPKLAWVGDVFTTTATDSRPLTSPLRQATDEEDKGMRSETPPVPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPTGTDEAAKIQAPPPKKETPKEETPQLTGPEAGRKPTRGVGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPLATKVEELPPKPLEQGDETPKVPKPDTLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGVLTQVPLAPPPSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPLPPSKEPLKEKLLTGPLSPVARGGSSGGSNMGLGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLSLSTSAPGPEEALPTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTSKAVGTGGGGGGGGPGLSNMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKASSGGGNSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERAPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNGAAPGGHPRPKTGPSQTPQGPPPPRPPARYDPQRANSNSVTSDPHFEEPGPMVRGVGGTPQDSAGVNPFPPKRRERPPRKPELLQEESLPSSHTSGFLGPKPEGPGPQGESRDAGTEALSPHIWNRLHAAAGRKRYQPGSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAADGLPKRPGGPSPLNAVPGEGPPGSEPSEPPRRRPPAPHDGDRKELPREQPLPPGPIGTERLQRTDRGPEPSSLRSAHRPGPPVQFGTSDKDSDLCLVVGDSLKAEKELTASVTEAIPIARDWELLPSASASAEPQSKSLGSAHCGPEPSSSGQRLYPEVFYGSPGPPSSQVSGGIDSQLHPNNGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVAVKGQFLDFSALQAAELGKLPAGGVLFPPPSFLYSPAFCPSPLPDPPLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPAARVLPSPARPFGPSLGRAELHPVELKPFQDYRKLNSNLGGPGSSRTPPAGRSFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERTGPPSREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2164, "header": "tr|A0A5G2R0F0-1|A0A5G2R0F0_PIG Isoform 1 of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=1 CANONICAL=A0A5G2R0F0-1" }, "locus": { "chromosome": "7", "start_pos": 23755882, "end_pos": 23742343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079739.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079739.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067676.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067676.1" } ] } }, { "isoform_ac": "A0ABB5UQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQS9/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPVEPQLPSKEGPESPEEVPAPATPPAPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSAPPAPVPPSPPQPVTMGAVPAPQAAPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAAPLLRDRGTPPVDPKLAWVGDVFTTTATDSRPLTSPLRQATDEEDKGMRSETPPVPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPTGTDEAAKIQAPPPKKETPKEETPQLTGPEAGRKPTRGVGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPLATKVEELPPKPLEQGDETPKVPKPDTLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGVLTQVPLAPPPSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPLPPSKEPLKEKLLTGPLSPVARGGSSGGSNMGLGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLSLSTSAPGPEEALPTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTSKAVGTGGGGGGGGPGLSNMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKASSGGGNSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERAPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNGAAPGGHPRPKTGPSQTPQGPPPPRPPARYDPQRANSNSVTSDPHFEEPGPMVRGVGGTPQDSAGVNPFPPKRRERPPRKPELLQEESLPSSHTSGFLGPKPEGPGPQGESRDAGTEALSPHIWNRLHAAAGRKRYQPGSMEPWMEPLSPFEDVAGTEETATCPP", "length": 1630, "header": "tr|A0ABB5UQS9-1|A0ABB5UQS9_PIG Computationally mapped isoform of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=1 CANONICAL=A0A5G2R0F0-1" }, "locus": { "chromosome": "7", "start_pos": 23753027, "end_pos": 23742343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107817.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107817.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082203.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082203.1" } ] } }, { "isoform_ac": "A0ABB5UQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQY7/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPGVAPAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPESPEEVPAPATPPAPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSAPPAPVPPSPPQPVTMGAVPAPQAAPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAAPLLRDRGTPPVDPKLAWVGDVFTTTATDSRPLTSPLRQATDEEDKGMRSETPPVPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPTGTDEAAKIQAPPPKKETPKEETPQLTGPEAGRKPTRGVGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPLATKVEELPPKPLEQGDETPKVPKPDTLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGVLTQVPLAPPPSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPLPPSKEPLKEKLLTGPLSPVARGGSSGGSNMGLGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLSLSTSAPGPEEALPTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTSKAVGTGGGGGGGGPGLSNMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKASSGGGNSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERAPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNGAAPGGHPRPKTGPSQTPQGPPPPRPPARYDPQRANSNSVTSDPHFEEPGPMVRGVGGTPQDSAGVNPFPPKRRERPPRKPELLQEESLPSSHTSGFLGPKPEGPGPQGESRDAGTEALSPHIWNRLHAAAGRKRYQPGSMEPWMEPLSPFEDVAGTEVSSGPCSQRSSPDGGLKGAADGLPKRPGGPSPLNAVPGEGPPGSEPSEPPRRRPPAPHDGDRKELPREQPLPPGPIGTERLQRTDRGPEPSSLRSAHRPGPPVQFGTSDKDSDLCLVVGDSLKAEKELTASVTEAIPIARDWELLPSASASAEPQSKSLGSAHCGPEPSSSGQRLYPEVFYGSPGPPSSQVSGGIDSQLHPNNGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVAVKGQFLDFSALQAAELGKLPAGGVLFPPPSFLYSPAFCPSPLPDPPLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPAARVLPSPARPFGPSLGRAELHPVELKPFQDYRKLNSNLGGPGSSRTPPAGRSFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERTGPPSREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2149, "header": "tr|A0ABB5UQY7-1|A0ABB5UQY7_PIG Computationally mapped isoform of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=1 CANONICAL=A0A5G2R0F0-1" }, "locus": { "chromosome": "7", "start_pos": 23755882, "end_pos": 23742343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107818.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107818.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082204.1" } ] } }, { "isoform_ac": "A0ABB5US28-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5US28/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPGVAPAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPESPEEVPAPATPPAPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSAPPAPVPPSPPQPVTMGAVPAPQAAPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAAPLLRDRGTPPVDPKLAWVGDVFTTTATDSRPLTSPLRQATDEEDKGMRSETPPVPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPTGTDEAAKIQAPPPKKETPKEETPQLTGPEAGRKPTRGVGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPLATKVEELPPKPLEQGDETPKVPKPDTLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGVLTQVPLAPPPSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPLPPSKEPLKEKLLTGPLSPVARGGSSGGSNMGLGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLSLSTSAPGPEEALPTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTSKAVGTGGGGGGGGPGLSNMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKASSGGGNSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERAPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNGAAPGGHPRPKTGPSQTPQGPPPPRPPARYDPQRANSNSVTSDPHFEEPGPMVRGVGGTPQDSAGVNPFPPKRRERPPRKPELLQEESLPSSHTSGFLGPKPEGPGPQGESRDAGTEALSPHIWNRLHAAAGRKRYQPGSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAADGLPKRPGGPSPLNAVPGEGPPGSEPSEPPRRRPPAPHDGDRKELPREQPLPPGPIGTERLQRTDRGPEPSSLRSAHRPGPPVQFGTSDKAIPIARDWELLPSASASAEPQSKSLGSAHCGPEPSSSGQRLYPEVFYGSPGPPSSQVSGGIDSQLHPNNGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGVAVKGQFLDFSALQAAELGKLPAGGVLFPPPSFLYSPAFCPSPLPDPPLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPAARVLPSPARPFGPSLGRAELHPVELKPFQDYRKLNSNLGGPGSSRTPPAGRSFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERTGPPSREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2140, "header": "tr|A0ABB5US28-1|A0ABB5US28_PIG Computationally mapped isoform of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=1 CANONICAL=A0A5G2R0F0-1" }, "locus": { "chromosome": "7", "start_pos": 23755882, "end_pos": 23742343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107819.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107819.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082205.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082205.1" } ] } }, { "isoform_ac": "F1RTF0-1", "url": "https://www.uniprot.org/uniprotkb/F1RTF0/entry", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPAPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKESQAAAGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAVPPAPAPPPAVPKELPTPPAPSPAPVPTPEKEPEEPAQAPPAQSTPTPGVAPAPTLWNPSCPQKRVLNHQKRFLHLPHRQHQRWNPRVMGLVLPGSPPAKA", "length": 614, "header": "tr|F1RTF0-1|F1RTF0_PIG Computationally mapped isoform of Proline rich coiled-coil 2A OS=Sus scrofa OX=9823 GN=PRRC2A PE=1 SV=3 CANONICAL=A0A5G2R0F0-1" }, "locus": { "chromosome": "7", "start_pos": 23747910, "end_pos": 23742343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001540.6", "url": "https://www.ensembl.org/id/ENSSSCT00000001540.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001498.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001498.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1021, "start_aa": "Thr", "end_pos": 1021, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1021", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1551, "start_aa": "Thr", "end_pos": 1551, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1551", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 530, "start_aa": "Thr", "end_pos": 530, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr530", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 541, "start_aa": "Thr", "end_pos": 541, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr541", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 560, "start_aa": "Thr", "end_pos": 560, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr560", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 610, "start_aa": "Thr", "end_pos": 610, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr610", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 626, "start_aa": "Thr", "end_pos": 626, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr626", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8PXX5-1", "protein_name": "Protein PRRC2A isoform X1", "gene_name": "prrc2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSERSGQTAKGKDGKTKYASLNLFDTYKGKSLEAQKPVVAPRHGLQSLGKVASTRRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQADPKSTDVLSAAQPESQQPVASQTSAPSIPRTPPAQEPPTPALAVGPRSWAPASVTHGAQGDGGKGSNQPSPFSREEFPTLQAAGDQDRAGKEQATADQWYGPGPSLRPQNVTSWRDGGGRALAPTLAGEAVAEGGAGGVILMEGAAGAPPIQQQNASSHGPPRTPPTSNPALPLPQPTIGPQFQAYRGIMPPFVSMYPPYLPFPPPYGPQGPYRYPPPNEAPRFSRNQGGIGPDGRPPGGPRGEVVKRPSILKQDDLKELDELDHDGDEGWAGAQEEIDYSAKLKFSDDEGEDDGEEERGENKNGTRESREQQRSQDGPVPVSRSRASDSGGDSRRTPPSSTEDGSVSPSSKPGWAEEGGSSWNSQANAGSYQGPRPGLGGTREQPSPPPGPLLGQGPHSYYRQDRPSNQSPIPGPILAPQKPSSAHAQQQAGTVPGGPTPPPSNTLHPQQQGEDEDETWRQRRKQSSTEISAAVERARRRREEEERRMQEERRAACAEKLKRLDEKQQQQTIKPSSPSDAPANSPSPSLSAHASSPNVSQPSSPCVDTEEPPLLSAQGSGATLGLTNNNRQRAGSNSSHDSNNESQQVLQPQATQHPQSQDVPGPGDIKEEHVVGGPHIRSTRVGDDSVKVVECVGVTGRQGSGPSGQGFSKYQKSLPPRFQRQQQEQLLKQQQQWQQQQQQHNQVAAQNQLQSQPQNQQGPAPGTAPQSGPKQPTLYPPGSMGRPPPLPMNFDPRWMMMPYMDPRMMQGRPPPMDYYPPSMHPSGMMNRERSDSGGSGSDPFDRQQHAGPPHSHRGTPPMDPKLAWGPDVFPGGTEGRGLSSPLRQKAVEEEEAGKGQRSDTPPVRMREGGTASVQQPGVAPSSPSGSSNQTPPPLGIQVGGAGHHAHHQPFLDGRGGYSSYPDNGSRMGSHLQQRANSGGTLHGFGHQEGSQPNQIWGTPHPHYDRSDHSALESNSHHQHHGPPSHAPHFSLHPHKQENGREREKMVEPKKNDPSPPLHQPSLSSSCSSSSSSSSAREDGSGKQSLHNQVPPLHEHDTGSTHASGRKQDKTGNAHNQPPQHSGQQHHPRANPRNREHKTETHWGPRPGSSSVSGSSTHNRKTGSGIIAITEPSGNQGAENKSFNQSDGITVKRAGPIKRPVLKEIKREGGEGGGEKTTGGSGKDKEQDASQTTTKQEPATGNQVILAPSGKDDAVSSNKPRTGGKERGNTGGSGKGSKNGESSMQNSGYSASQSRREREHSPERGSTTYHSSSSRGSRSNRGRGEFYGRGRGYRGTYVGSAGGGNRGKAGGRNSRDYRPAANSGYHHPSSNQDYKREASSGSGRHGTSQPNPGRARNRSETRSEGSEYEEVPKRRRQRGSETGSESAGSDLAHSDKEDRKLNTKAGTVGENPTTGPSSSASVRNTQTRVFTPRGVPSRRGRGGGGAGGGLHRSGGGAGVSGGQRPGPGSSSHGWSAKSANVRKPQTSSQPPPAKDLSRGVNVDKKKPAEQNQPQSQSANPTTTVASVPTTIQQGSTENGNVGAPMSSTNAPSNPAGAPTQSLPLPAPDGRNFPNRGFERPPRRRRHGRSQHQQDKPPRFRRLKQERENAARINGSSGLIEVIAAQQQRTAPLLQNSLQQANSTPNVPDAVVANANHSVSTTPNSNNNSSNLAGGNQNFNSHHHHHYQGNSQSHPQHHHNHNPAGGAKSPDVSNQNSDQANEEWETASESSDFTEFREREGGGGGKSYSSHHHHHHHHHHPPGRGGGGGGGGDREMTAKELASGKRSFSSQRPGMERQNRRVNAGGGGGGKGQRGPPGTGGPVGGAGNGGGNRGERRGNWPSPKNRK", "length": 1923 }, "evidence": [ { "id": "A0A5G2R0F0", "url": "https://omabrowser.org/oma/group/A0A5G2R0F0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BAF6-1", "protein_name": "Proline rich coiled-coil 2A", "gene_name": "PRRC2A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQQPESQPLPASQTPASNQSKRPPAAPENTPSVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQLSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGPEGHKESQSAGGEERPPEADGKKGNSPGSEPPPPKTAWAETSRPPETEPGPPAPKPPPPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPATPPAPAPPPAVPKELPTPPAPPPAPVPTPEKEPEESAQPSPAQSTPTPGVALAPTAVSGGGSANSTSSGSFEASAVEPQVPSKEGPEPPEEVPSPATPPAPKAEPKGDGVGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQWQQHQQGSSQPTPVPPSPPQPVTMGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAPPLLRDRGTPPVDPKLAWVGDVFTTTPADPRPLTSPLRQAADEDEKGMRSETPPVPPPPPYLASYPGFPENGAPGPPIPRFPLEEPAPPGPRPLPWPPGNEEAAKMQAPPPKKETPKEEAPQLTGPETGRKPSRGIGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEESGAPPRRAGPIKKPPPPAKVEELPPNPKPLEQGDETPKAPKPDPLKTAKGKIGGPKETPPSGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTTKEGVLTQVPLAPPSSGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPPICPGWSPPTKSLAPKKPPTGPMPPSKESLKEKLTPGPLCPMARGGSSGGNNGGMGVEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGAEGKPSSLAPPASTPGSEEALTTVAVPPPPRRAAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKEAPPPALLTPKAVGTHGGSGGGAGPGISTMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPSSKSGGGGGSSGGGGGGPGGRAGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSAAAPVGHPRPKPGPPQAPQGPSPRPPTRYDPQRANNDDVNSDPHFEEPGPMVRGVSGTPRDSAGVNPFPPKRRERPPRKPELLQEESLPPSHSSGFLGPKPEGSGPQGESRDAGTEALTPHIWNRLHTATSRKSYQSGSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGSAEGPPKRPGGPSPLNAVPGEGPPGSEPSEPPRRRPPAPHDGDRKELPREQPLPPGPIGTERLQRTDRGPEPGSLRPSHRPGPPVQFGTNDKDSDLCLVVRESLKAEKELTASVTEAIPMARDWELLPSASASAEPQSKNLASGHCGPETSSSGQRLYPEIFYGSPGPPSSQVSGGAIDSQLHPNSGGFRPGTPSLHSYRSQPLYLPTGPAPPSALLSGVAVKGQFLDFSALQATELGKLPAGGVLYPPPSFLYSPAFCPSPLPDPPLLQVRQDLPSPSDFYSAPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPPLQPPSLAVRPPPAPATRVLPSPARPFGPSLGRAELHPVELKPFQDYRKLNSNLGGPGSSRTPPSGRSFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERTGPPSREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2166 }, "evidence": [ { "id": "A0A5G2R0F0", "url": "https://omabrowser.org/oma/group/A0A5G2R0F0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P48634-1", "protein_name": "Protein PRRC2A", "gene_name": "PRRC2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFDRHAPAMLRERGTPPVDPKLAWVGDVFTATPAEPRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHIWNRLHTATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERSQRTDRGTEPGPIRPSHRPGPPVQFGTSDKDSDLRLVVGDSLKAEKELTASVTEAIPVSRDWELLPSAAASAEPQSKNLDSGHCVPEPSSSGQRLYPEVFYGSAGPSSSQISGGAMDSQLHPNSGGFRPGTPSLHPYRSQPLYLPPGPAPPSALLSGLALKGQFLDFSTMQATELGKLPAGGVLYPPPSFLYSPAFCPSPLPDTSLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLPSPARPFPASLGRAELHPVELKPFQDYQKLSSNLGGPGSSRTPPTGRSFSGLNSRLKATPSTYSGVFRTQRVDLYQQASPPDALRWIPKPWERTGPPPREGPSRRAEEPGSRGDKEPGLPPPR", "length": 2157 }, "evidence": [ { "id": "A0A5G2R0F0", "url": "https://omabrowser.org/oma/group/A0A5G2R0F0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TSC1-1", "protein_name": "Protein PRRC2A", "gene_name": "Prrc2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDRSGPTAKGKDGKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPTAPENTPSVPSGVKSWAQASVTHGAHGDGGRASNLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDDLEGPDSKLHHGHDPRGGLQPSGPPQFPPYRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHKDSQSAAAEEPETDGKKGTSPGSELPPPKTAWTENARPSETEPAPPTPKPPPPPPHRGPVGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVTPAAPALPPVVPKEIPAAPALPPTPTPTPEKEPEEPAQAPPVQAAPSPGVAPVPTLVSGGGCTANSNSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPAPKMEPKGDGVGSTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQQQQWQQQQQGTAPPAPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRWMMIPPYVDPRLLQGRPPLDFYPPGVHPSGLVPRERSDSGGSSSEPFERHAPPLLRERGTPPVDPKLAWVGDVFTTTPTDPRPLTSPLRQAADEEEKSMRSETPPVPPPPPYLANYPGFPENGTPGPPISRFPLEESAPPGPRPLPWPPGNDEAAKMQAPPPKKEPSKEEPPQLSGPEAGRKPARGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEEPGVPPRRAGPIKKPPPPVKVEELPPKSLEQGDETPKVPKPDALKTAKGKVGPKETPPGGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGSGGTNHPSAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTARGGRVFTPRGVPSRRGRGGGRPPPVCSGWSPPAKSLVPKKPPTGPLPPSKEPLKEKLISGPLSPMSRAGNMGVGMEDGERPRRRRHGRAQQQDKPPRFRRLKQERENAARGADGKPPSLTLAASTPGPEETLTAATVPPPPRRTAAKSPDLSNQNSDQANEEWETASESSDFASERRGDKETPPAALMTSKAVGTPGANAGGAGPGISAMSRGDLSQRAKDLSKRSFSSQRPGMDRQNRRPGTGGKTGSGGGSSGGGGAGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGNVTAPGGHPRPKPGPPQAPQGSSPRPPTRYDPPRASSAISSDPHFEEPGPMVRGVGGTPRDSAGVNPFPPKRRERPPRKPELLQEETVPASHSSGFLGSKPEVPGPQEESRDSGTEALTPHIWNRLHTATSRKSYQPGSIEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQVSSGPCSQRSSPDGGLKGSAEGPPKRPGGPSPLNAVPGESASGSEPSEPPRRRPPASHEGERKELPREQPLPPGPIGTERSQRTDRGPEPGPLRPAHRPGSQVEFGTTNKDSDLCLVVGDTLKGEKELVASATEAVPISRDWELLPSASTSAEPQPKSLGSGQCVPEPSPSGQRPYPEVFYGSPGPPNSQQVSGGAPIDSQLHPNSGGFRPGTPSLHQYRSQPLYLPPGPAPPSALLSGVALKGQFLDFSALQATELGKLPAGGVLYPPPSFLYSAAFCPSPLPDPPLLQVRQDLPSPSDFYSTPLQPGGQSGFLPSGAPAQQMLLPVVDSQLPVVNFGSLPPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLPSPARPFAPSLGRAELHPVELKPFQDYRKLSSNLGGPGSSRTPPSGRPFSGLNSRLKAPPSTYSGVFRTQRIDLYQQASPPDALRWMPKPWERAGPPSREGPPRRAEEPGSRGEKEPGLPPPR", "length": 2158 }, "evidence": [ { "id": "A0A5G2R0F0", "url": "https://omabrowser.org/oma/group/A0A5G2R0F0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1002, "end_pos": 1004, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1370, "end_pos": 1372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1441, "end_pos": 1443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0F0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F0" }, { "id": "PF07001", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAT2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 188, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 530, 541, 560, 610, 626, 1021, 1551 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1002, "end_pos": 1004 }, { "start_pos": 1370, "end_pos": 1372 }, { "start_pos": 1441, "end_pos": 1443 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0F1-1", "uniprot_ac": "A0A5G2R0F1", "uniprot_id": "A0A5G2R0F1_PIG", "mass": { "chemical_mass": 20283.0, "monoisotopic_mass": 20283.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0F1", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0F1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044934", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044934", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R0F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATLPKAIYRFNASPIKLPRTFFTELEQTIQKFIWNHKRPRIAKAILRNKNQAGSITLPDFRQYYKATVNKTVSYWYQKRHTDQWNRIKNPEINPDTCGQLIFDKGGKNIKWGKDSLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENRQNIL", "length": 171, "header": "tr|A0A5G2R0F1-1|A0A5G2R0F1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0F1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1/entry", "sequence": { "sequence": "MATLPKAIYRFNASPIKLPRTFFTELEQTIQKFIWNHKRPRIAKAILRNKNQAGSITLPDFRQYYKATVNKTVSYWYQKRHTDQWNRIKNPEINPDTCGQLIFDKGGKNIKWGKDSLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENRQNIL", "length": 171, "header": "tr|A0A5G2R0F1-1|A0A5G2R0F1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0F1-1" }, "locus": { "chromosome": "13", "start_pos": 87614553, "end_pos": 87614041, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073792.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073792.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069865.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069865.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0F1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0F1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0F1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 171, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0F1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0F1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0I2-1", "uniprot_ac": "A0A5G2R0I2", "uniprot_id": "A0A5G2R0I2_PIG", "mass": { "chemical_mass": 76096.0, "monoisotopic_mass": 76096.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF81", "type": "recommended", "evidence": [ { "id": "A0A5G2R0I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ] } ], "protein_names": [ { "name": "Zinc finger protein 81", "type": "synonym", "evidence": [ { "id": "A0A5G2R0I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A8W4FBP5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP5#function" }, { "database": "UniProtKB", "id": "F1RW60", "url": "https://www.uniprot.org/uniprotkb/F1RW60#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2", "locus": { "chromosome": "X", "start_pos": 42468024, "end_pos": 42246751, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012283", "url": "https://www.ensembl.org/id/ENSSSCG00000012283" } ] } } ], "crossref": [ { "id": "A0A5G2R0I2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0I2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012283", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012283", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523106", "url": "https://www.ncbi.nlm.nih.gov/gene/100523106", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523106", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523106", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTNHENT", "url": "https://omabrowser.org/oma/group/YTNHENT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FBP5", "url": "https://www.orthodb.org/?gene=A0A8W4FBP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBP5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW60", "url": "https://www.uniprot.org/uniprotkb/F1RW60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW60-1", "url": "https://www.uniprot.org/uniprotkb/F1RW60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAHRSSPWPGAPDSSCEVSVSFEDVTVDFSREEWQHLDPAQRRLYQDVMLENYSHLLSLGYEIPKPEVILKLEQGEEPWMLERDTPHRRCSDGKFGIKTSQKRISGKVSFHSEVEGEDTRDDSLYSILEELWQDTEQIKSYQEKQNKPLGHTAFINKKILNTEWDYEYKDSGKFVHPGPNCIPSQKRLHKRDSFGKNLKHNLDLQIHSKSNATKNFDKIIGHDQVFTQSSSFTNHENTQTAVKFCDSNQCGKVFSLKQALSHNLKFPVGEKSNMCTEFGKIFTQRSHLFASQRIHTMEKPHELSKCVNVFTQKPLLSIYLRVHRDEKLYICSECGKAFIQNSELIMHEKIHTREKPYKCSECGKSFFQVSSLLRHQTTHTGEKLYECSECGKGFSLNSALNVHQKIHTGERHHKCSECGKAFTQKSTLRMHQRIHTGERSYICTECGQAFIQKAHLIAHQRIHTGEKPYECSDCGKSFPSKSQLQMHKRIHTGEKPYICTDCGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPYVCADCGRAFIQKSELITHQRIHTTEKPYKCSDCEKSFSKKPHLKVHQRIHTGEKPYICAECGKAFTDRSNFNKHQTIHTGDKPYKCSDCGKGFTQKSVLSMHRNIHT", "length": 661, "header": "tr|A0A5G2R0I2-1|A0A5G2R0I2_PIG Isoform 1 of Zinc finger protein 81 OS=Sus scrofa OX=9823 GN=ZNF81 PE=3 SV=2 CANONICAL=A0A5G2R0I2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2/entry", "sequence": { "sequence": "MPAHRSSPWPGAPDSSCEVSVSFEDVTVDFSREEWQHLDPAQRRLYQDVMLENYSHLLSLGYEIPKPEVILKLEQGEEPWMLERDTPHRRCSDGKFGIKTSQKRISGKVSFHSEVEGEDTRDDSLYSILEELWQDTEQIKSYQEKQNKPLGHTAFINKKILNTEWDYEYKDSGKFVHPGPNCIPSQKRLHKRDSFGKNLKHNLDLQIHSKSNATKNFDKIIGHDQVFTQSSSFTNHENTQTAVKFCDSNQCGKVFSLKQALSHNLKFPVGEKSNMCTEFGKIFTQRSHLFASQRIHTMEKPHELSKCVNVFTQKPLLSIYLRVHRDEKLYICSECGKAFIQNSELIMHEKIHTREKPYKCSECGKSFFQVSSLLRHQTTHTGEKLYECSECGKGFSLNSALNVHQKIHTGERHHKCSECGKAFTQKSTLRMHQRIHTGERSYICTECGQAFIQKAHLIAHQRIHTGEKPYECSDCGKSFPSKSQLQMHKRIHTGEKPYICTDCGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPYVCADCGRAFIQKSELITHQRIHTTEKPYKCSDCEKSFSKKPHLKVHQRIHTGEKPYICAECGKAFTDRSNFNKHQTIHTGDKPYKCSDCGKGFTQKSVLSMHRNIHT", "length": 661, "header": "tr|A0A5G2R0I2-1|A0A5G2R0I2_PIG Isoform 1 of Zinc finger protein 81 OS=Sus scrofa OX=9823 GN=ZNF81 PE=3 SV=2 CANONICAL=A0A5G2R0I2-1" }, "locus": { "chromosome": "X", "start_pos": 42362148, "end_pos": 42285188, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075038.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075038.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067711.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067711.2" } ] } }, { "isoform_ac": "A0A5G2RA43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA43/entry", "sequence": { "sequence": "MPAHRSSHGPSLALTTGAPDSSCEVSVSFEDVTVDFSREEWQHLDPAQRRLYQDVMLENYSHLLSLGYEIPKPEVILKLEQGEEPWMLERDTPHRRCSGIPLGQEADFHWSPQLELCLLLRLLSRNLLCSRDSSSLVLLCTWKKHQRSLSAEAQRKDHVRTVRRQPSTSQEERLHQKPTLIWDFQPPEL", "length": 189, "header": "tr|A0A5G2RA43-1|A0A5G2RA43_PIG Computationally mapped isoform of Zinc finger protein 81 OS=Sus scrofa OX=9823 GN=ZNF81 PE=4 SV=1 CANONICAL=A0A5G2R0I2-1" }, "locus": { "chromosome": "X", "start_pos": 42467875, "end_pos": 42285188, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081636.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081636.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073906.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073906.1" } ] } }, { "isoform_ac": "A0A8W4FBP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP5/entry", "sequence": { "sequence": "MPAHRSSHGPSLALTTGAPDSSCEVSVSFEDVTVDFSREEWQHLDPAQRRLYQDVMLENYSHLLSLGYEIPKPEVILKLEQGEEPWMLERDTPHRRCSDGKFGIKTSQKRISGKVSFHSEVEGEDTRDDSLYSILEELWQDTEQIKSYQEKQNKPLGHTAFINKKILNTEWDYEYKDSGKFVHPGPNCIPSQKRLHKRDSFGKNLKHNLDLQIHSKSNATKNFDKIIGHDQVFTQSSSFTNHENTQTAVKFCDSNQCGKVFSLKQALSHNLKFPVGEKSNMCTEFGKIFTQRSHLFASQRIHTMEKPHELSKCVNVFTQKPLLSIYLRVHRDEKLYICSECGKAFIQNSELIMHEKIHTREKPYKCSECGKSFFQVSSLLRHQTTHTGEKLYECSECGKGFSLNSALNVHQKIHTGERHHKCSECGKAFTQKSTLRMHQRIHTGERSYICTECGQAFIQKAHLIAHQRIHTGEKPYECSDCGKSFPSKSQLQMHKRIHTGEKPYICTDCGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPYVCADCGRAFIQKSELITHQRIHTTEKPYKCSDCEKSFSKKPHLKVHQRIHTGEKPYICAECGKAFTDRSNFNKHQTIHTGDKPYKCSDCGKGFTQKSVLSMHRNIHT", "length": 667, "header": "tr|A0A8W4FBP5-1|A0A8W4FBP5_PIG Computationally mapped isoform of Zinc finger protein 81 OS=Sus scrofa OX=9823 GN=ZNF81 PE=3 SV=1 CANONICAL=A0A5G2R0I2-1" }, "locus": { "chromosome": "X", "start_pos": 42362148, "end_pos": 42285188, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101263.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101263.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076687.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076687.1" } ] } }, { "isoform_ac": "F1RW60-1", "url": "https://www.uniprot.org/uniprotkb/F1RW60/entry", "sequence": { "sequence": "MSFEDVTVDFSREEWQHLDPAQRRLYQDVMLENYSHLLSLGYEIPKPEVILKLEQGEEPWMLERDTPHRRCSDGKFGIKTSQKRISGKVSFHSEVEGEDTRDDSLYSILEELWQDTEQIKSYQEKQNKPLGHTAFINKKILNTEWDYEYKDSGKFVHPGPNCIPSQKRLHKRDSFGKNLKHNLDLQIHSKSNATKNFDKIIGHDQVFTQSSSFTNHENTQTAVKFCDSNQCGKVFSLKQALSHNLKFPVGEKSNMCTEFGKIFTQRSHLFASQRIHTMEKPHELSKCVNVFTQKPLLSIYLRVHRDEKLYICSECGKAFIQNSELIMHEKIHTREKPYKCSECGKSFFQVSSLLRHQTTHTGEKLYECSECGKGFSLNSALNVHQKIHTGERHHKCSECGKAFTQKSTLRMHQRIHTGERSYICTECGQAFIQKAHLIAHQRIHTGEKPYECSDCGKSFPSKSQLQMHKRIHTGEKPYICTDCGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPYVCADCGRAFIQKSELITHQRIHTTEKPYKCSDCEKSFSKKPHLKVHQRIHTGEKPYICAECGKAFTDRSNFNKHQTIHTGDKPYKCSDCGKGFTQKSVLSMHRNIHT", "length": 641, "header": "tr|F1RW60-1|F1RW60_PIG Computationally mapped isoform of Zinc finger protein 81 OS=Sus scrofa OX=9823 GN=ZNF81 PE=3 SV=4 CANONICAL=A0A5G2R0I2-1" }, "locus": { "chromosome": "X", "start_pos": 42362148, "end_pos": 42277036, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013432.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013432.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013072.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013072.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523106", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523106", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LR59-1", "protein_name": "Zinc finger protein 81", "gene_name": "Znf81", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYHIFCIHSSVEGNLGSFQLLAIINKAAMNIVEHVRLFYVGASCGYMPKRGIARSSGSSMSNFLRNLQTDFQNGCTSLQSHQQWRSVPLSPHPRQHLLSGGKFRINNSEKRISEKVTIYGETVDEDSRDDSLYSILEEMWQGADWMKRYQGKQFSPLSHAAFSKKILNTERVYECTDIEKHVHLKPNVVPSQKRIHKKDSFGKHFKHNLDLHIPNKNKATKISDQKISHRQDFAHSTSYTNLENPHMGTEFCESQYGNAIRFKQAHRQSMIFPTGERLKPCDAFGMNLTQKSYTFTSSRIHNVEKHPELSKCTNVFTQKPLLSICLRFHRDEKLYICTNCGKAFIQNSELKMHEKTHTREKLYTCSECGKSFYQLPSLHRHQTIHSEEKFCSCSEFGKDFSLSSALNIHQKIHTRERHHKCNECGKAFTQKSTLRMHQRIHTGERSYICTKCGQAFIQKAHLIAHQRIHTGEKPYQCSDCGKSFPSKSQLQMHKRIHTGEKPYICTECGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPHVCASCGRAFIQKSQLITHQKIHIMEKPYKCPDCEKSFFKKPHLKVHQRIHTGEKPYICAKCGKAFTDRSNFNKHQTVHTGDKPYKCSECGKGFTQKSVLSIHRNIHT", "length": 666 }, "evidence": [ { "id": "A0A5G2R0I2", "url": "https://omabrowser.org/oma/group/A0A5G2R0I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51508-1", "protein_name": "Zinc finger protein 81", "gene_name": "ZNF81", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPANEDAPQPGEHGSACEVSVSFEDVTVDFSREEWQQLDSTQRRLYQDVMLENYSHLLSVGFEVPKPEVIFKLEQGEGPWTLEGEAPHQSCSDGKFGIKPSQRRISGKSTFHSEMEGEDTRDDSLYSILEELWQDAEQIKRCQEKHNKLLSRTTFLNKKILNTEWDYEYKDFGKFVHPSPNLILSQKRPHKRDSFGKSFKHNLDLHIHNKSNAAKNLDKTIGHGQVFTQNSSYSHHENTHTGVKFCERNQCGKVLSLKHSLSQNVKFPIGEKANTCTEFGKIFTQRSHFFAPQKIHTVEKPHELSKCVNVFTQKPLLSIYLRVHRDEKLYICTKCGKAFIQNSELIMHEKTHTREKPYKCNECGKSFFQVSSLLRHQTTHTGEKLFECSECGKGFSLNSALNIHQKIHTGERHHKCSECGKAFTQKSTLRMHQRIHTGERSYICTQCGQAFIQKAHLIAHQRIHTGEKPYECSDCGKSFPSKSQLQMHKRIHTGEKPYICTECGKAFTNRSNLNTHQKSHTGEKSYICAECGKAFTDRSNFNKHQTIHTGEKPYVCADCGRAFIQKSELITHQRIHTTEKPYKCPDCEKSFSKKPHLKVHQRIHTGEKPYICAECGKAFTDRSNFNKHQTIHTGDKPYKCSDCGKGFTQKSVLSMHRNIHT", "length": 661 }, "evidence": [ { "id": "A0A5G2R0I2", "url": "https://omabrowser.org/oma/group/A0A5G2R0I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0I2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 661, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0I2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0I2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 301, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0I2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 92, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 509, "end_pos": 511 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0K0-1", "uniprot_ac": "A0A5G2R0K0", "uniprot_id": "A0A5G2R0K0_PIG", "mass": { "chemical_mass": 52460.0, "monoisotopic_mass": 52460.0 }, "refseq": {}, "gene_names": [ { "name": "SIMC1", "type": "recommended", "evidence": [ { "id": "A0A5G2R0K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0" } ] } ], "protein_names": [ { "name": "SUMO interacting motifs containing 1", "type": "synonym", "evidence": [ { "id": "A0A5G2R0K0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0K0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIMC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0K0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0K0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014062", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014062", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR052119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23187", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23187", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23187:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23187:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R0K0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDFIVISDDSGSESSGGNRSGRARRLRRALSRTPGTLPRRTVSKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLAYVMEEEGQNLPGRVLFLRYVVQTLEDDFQQILRKQRQHLQQSIASTVLSCDKQPHNVRDVIKWLVKEVTEDRLTQPPDENQTSPGTGILKANSSQPSPQPNLTKNTSQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVMDVEKQIEAFRGRLVQMLGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPSAKAWSSP", "length": 457, "header": "tr|A0A5G2R0K0-1|A0A5G2R0K0_PIG Isoform 1 of SUMO interacting motifs containing 1 OS=Sus scrofa OX=9823 GN=SIMC1 PE=4 SV=1 CANONICAL=A0A5G2R0K0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0/entry", "sequence": { "sequence": "MEDFIVISDDSGSESSGGNRSGRARRLRRALSRTPGTLPRRTVSKGQKLEPIPHRRLRMVTNTIEENFPLGTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLAYVMEEEGQNLPGRVLFLRYVVQTLEDDFQQILRKQRQHLQQSIASTVLSCDKQPHNVRDVIKWLVKEVTEDRLTQPPDENQTSPGTGILKANSSQPSPQPNLTKNTSQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVMDVEKQIEAFRGRLVQMLGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPSAKAWSSP", "length": 457, "header": "tr|A0A5G2R0K0-1|A0A5G2R0K0_PIG Isoform 1 of SUMO interacting motifs containing 1 OS=Sus scrofa OX=9823 GN=SIMC1 PE=4 SV=1 CANONICAL=A0A5G2R0K0-1" }, "locus": { "chromosome": "2", "start_pos": 81613557, "end_pos": 81540298, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070680.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0K0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0K0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 457, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0K0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0K0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 }, { "start_pos": 218, "end_pos": 220 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 239, "end_pos": 241 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 334, "end_pos": 336 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0K2-1", "uniprot_ac": "A0A5G2R0K2", "uniprot_id": "A0A5G2R0K2_PIG", "mass": { "chemical_mass": 16958.0, "monoisotopic_mass": 16958.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0K2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0K2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0K2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043303", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043303", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R0K2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLAILGLLCFQRNFKIFCSSSVKNVLGNLIGIALNLEIASGSIVILIILTLLIQEHGMSFHLFVSSLISFISVLEFSEYRSFVSLGRFTPRYFILLDAMANRVASLISPSDLSLLVYRNAVHFCVLILYPVTLPNSLMSSNSFLVESLGFSR", "length": 153, "header": "tr|A0A5G2R0K2-1|A0A5G2R0K2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0K2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2/entry", "sequence": { "sequence": "MSLAILGLLCFQRNFKIFCSSSVKNVLGNLIGIALNLEIASGSIVILIILTLLIQEHGMSFHLFVSSLISFISVLEFSEYRSFVSLGRFTPRYFILLDAMANRVASLISPSDLSLLVYRNAVHFCVLILYPVTLPNSLMSSNSFLVESLGFSR", "length": 153, "header": "tr|A0A5G2R0K2-1|A0A5G2R0K2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0K2-1" }, "locus": { "chromosome": "6", "start_pos": 74221595, "end_pos": 74221137, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076179.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076179.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069915.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069915.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0K2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0K2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0K2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 153, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0K2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0K2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0L0-1", "uniprot_ac": "A0A5G2R0L0", "uniprot_id": "A0A5G2R0L0_PIG", "mass": { "chemical_mass": 11071.0, "monoisotopic_mass": 11071.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0L0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0L0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000046889", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000046889", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R0L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPESGIAGSYGSSMCKFLRYLQTVLHSGCTSLHSHQECRRVLFSPQPLQCLLFVDLLMMAILTGVRWYLMVVLICISLMIRCHVVCLYACVHLYSNIG", "length": 98, "header": "tr|A0A5G2R0L0-1|A0A5G2R0L0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0L0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0/entry", "sequence": { "sequence": "MPESGIAGSYGSSMCKFLRYLQTVLHSGCTSLHSHQECRRVLFSPQPLQCLLFVDLLMMAILTGVRWYLMVVLICISLMIRCHVVCLYACVHLYSNIG", "length": 98, "header": "tr|A0A5G2R0L0-1|A0A5G2R0L0_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0L0-1" }, "locus": { "chromosome": "5", "start_pos": 76701884, "end_pos": 76701506, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086939.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086939.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064046.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064046.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0L0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0L0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0L0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 98, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0L0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0L0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0P2-1", "uniprot_ac": "A0A5G2R0P2", "uniprot_id": "A0A5G2R0P2_PIG", "mass": { "chemical_mass": 24413.0, "monoisotopic_mass": 24413.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "L1 transposable element RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R0P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0P2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0P2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050174", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050174", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNAEERISDMEDRIMEITQSSQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGFKIQEAQRAPNKLNPSRPTPRHIIIKMAKVNDKERILKAAREKQNVTYKGTPIRISADFPTETLQARREWQEIFKVLKGKNMQPRILYLARISFKIEGEIKISSNKQKLKEYSNTKPRLKEILKGLL", "length": 209, "header": "tr|A0A5G2R0P2-1|A0A5G2R0P2_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R0P2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2/entry", "sequence": { "sequence": "MNNAEERISDMEDRIMEITQSSQQTENRIKKLESNIRDLWDNIKRANLRIIGIPEGVEKDKGMENIFEEIIDGNFPNLKDTGFKIQEAQRAPNKLNPSRPTPRHIIIKMAKVNDKERILKAAREKQNVTYKGTPIRISADFPTETLQARREWQEIFKVLKGKNMQPRILYLARISFKIEGEIKISSNKQKLKEYSNTKPRLKEILKGLL", "length": 209, "header": "tr|A0A5G2R0P2-1|A0A5G2R0P2_PIG Isoform 1 of L1 transposable element RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A5G2R0P2-1" }, "locus": { "chromosome": "3", "start_pos": 84412329, "end_pos": 84411703, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067657.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067657.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070725.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070725.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrotransposition", "id": "GO:0032197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032197", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0P2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 209, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0P2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0P2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" }, { "id": "PF02994", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element RRM", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 140, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0P2" }, { "id": "PF17490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L1 transposable element dsRBD-like", "eco_id": "ECO_0000259", "start_pos": 144, "end_pos": 206, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0R0-1", "uniprot_ac": "A0A5G2R0R0", "uniprot_id": "A0A5G2R0R0_PIG", "mass": { "chemical_mass": 20585.0, "monoisotopic_mass": 20585.0 }, "refseq": { "ac": "XP_005660613", "name": "uterocalin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660613" }, "gene_names": [ { "name": "LOC102160290", "type": "recommended", "evidence": [ { "id": "A0A5G2R0R0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0" } ] }, { "name": "LOC102160290", "type": "synonym", "evidence": [ { "id": "XP_005660613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660613" } ] } ], "protein_names": [ { "name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R0R0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0/entry#names_and_taxonomy" } ] }, { "name": "uterocalin", "type": "synonym", "evidence": [ { "id": "XP_005660613", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660613" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0R0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102160290", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0R0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0R0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044239", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044239", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102160290", "url": "https://www.ncbi.nlm.nih.gov/gene/102160290", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102160290", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R0R0", "url": "https://www.orthodb.org/?gene=A0A5G2R0R0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_005660613", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660613", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R0R0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALGRRPLLLLTLSLGLAGAQKSPEDVPVQPGFDARKVEGRWLTIQLAASRAHLVSPADPLRLALRSIWTRGQDVELVLFGIGEGLCQGLSVIVHPTGLRGQYRGPLEGGGSLLLHFVSTDYSHLILYVRFQDGGEATSLWALLARRHLEDPQWQGRYLEFVSKFQLQEAPVFNLDDPDAQCPPPEA", "length": 187, "header": "tr|A0A5G2R0R0-1|A0A5G2R0R0_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102160290 PE=3 SV=1 CANONICAL=A0A5G2R0R0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0/entry", "sequence": { "sequence": "MALGRRPLLLLTLSLGLAGAQKSPEDVPVQPGFDARKVEGRWLTIQLAASRAHLVSPADPLRLALRSIWTRGQDVELVLFGIGEGLCQGLSVIVHPTGLRGQYRGPLEGGGSLLLHFVSTDYSHLILYVRFQDGGEATSLWALLARRHLEDPQWQGRYLEFVSKFQLQEAPVFNLDDPDAQCPPPEA", "length": 187, "header": "tr|A0A5G2R0R0-1|A0A5G2R0R0_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN=LOC102160290 PE=3 SV=1 CANONICAL=A0A5G2R0R0-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1878641, "end_pos": 1875689, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078298.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078298.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069965.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069965.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0R0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102160290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160290", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0R0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0R0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0R0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0R0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 187, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0R0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0R0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0S8-1", "uniprot_ac": "A0A5G2R0S8", "uniprot_id": "A0A5G2R0S8_PIG", "mass": { "chemical_mass": 98806.0, "monoisotopic_mass": 98806.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A5G2R0S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A5G2R0S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0S8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0S8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000051452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000051452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01650", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01650", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYCPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYYLTPVRMAIINKSTNNKCWRGYGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTHMFIAALFTIARTWKQSKCPSTEDWIRKRWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2R0S8-1|A0A5G2R0S8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R0S8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8/entry", "sequence": { "sequence": "MDNFLESYSLPKLNQAETDQLNRPITRNEIEEVIKSLPTNKSPGPDGFTGEFYQTYKEELVPILLKLFQKVEEEGILPKTFYEATITLIPKPGRDTTKKENYCPISLMNIDAKLLNKILANRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINIIHHINKKKVKNHMIISIDAEKAFDKVQHPFMIKTLAKVGIEGTFLNIIKAIYDKPTANIILNGEKLKAFSLKSGTRQGCPLSPLLFNIVLEVLATAIRQTKEIKGIHIGREEIKLSLYADDMILYLENPKDSTPKLLELINKFSKVAGYKINIQKSVAFLYTSNEALEKEYKNTIPFKIVPHKIKYLGIHLTKEVKDLYAENYKTLIKEIKEDVKKWKDIPCSWIGKINIVKMAILPKAIYRFNAIPIKLPMTFFTELEQTIQTFIWNNKRPRIAKAILRNKNQAGGITLPDFKKYYKATVIKTVWYWYQNRQTDQWNRIENLEINPDTYGQLIFDKGGKNIKWEKESLFSKHCWETWTAACKAMKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSDINIMNIFSGQSPKAIETRAKINPWDLIKLKSFCTAKETQKKTKRQLTEWEKIVSNDATDKGLISRIYKQLIQLNSKKTNQSMEKWAKDLNRHFSKEDIQMANKHMKKCSTSLIIREMQIKTTMRYYLTPVRMAIINKSTNNKCWRGYGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPAIPLLGIYPDKALLKRDTCTHMFIAALFTIARTWKQSKCPSTEDWIRKRWYIYTMEYYSAIKKDDIMPFAATWMELENLILSEMSQKDKDKYHMTSLITGI", "length": 845, "header": "tr|A0A5G2R0S8-1|A0A5G2R0S8_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R0S8-1" }, "locus": { "chromosome": "1", "start_pos": 54988466, "end_pos": 54985932, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086928.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086928.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070718.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070718.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0S8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 845, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0S8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0S8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0S8" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 345, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 695, "end_pos": 697 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0T2-1", "uniprot_ac": "A0A5G2R0T2", "uniprot_id": "A0A5G2R0T2_PIG", "mass": { "chemical_mass": 22146.0, "monoisotopic_mass": 22146.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0T2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0T2", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0T2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049725", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049725", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R0T2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VGVTTPLEENIGQTLSDIKDSSIFSDPPLRILTIKTKINKRDLIKLKSFCTAKETLNKTKRQPTEWENIFASESTDKGFISKIHKHLLQLHTKKTNNPIKKWADDLNRRFSKEDIRMARNHMKRCSASLISREMHIKTTVRYPLTPARMAIIQRSANNKRWRGRGEKGTPDTVGGIVNWCNHCGEQYGDSSEN", "length": 193, "header": "tr|A0A5G2R0T2-1|A0A5G2R0T2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0T2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2/entry", "sequence": { "sequence": "VGVTTPLEENIGQTLSDIKDSSIFSDPPLRILTIKTKINKRDLIKLKSFCTAKETLNKTKRQPTEWENIFASESTDKGFISKIHKHLLQLHTKKTNNPIKKWADDLNRRFSKEDIRMARNHMKRCSASLISREMHIKTTVRYPLTPARMAIIQRSANNKRWRGRGEKGTPDTVGGIVNWCNHCGEQYGDSSEN", "length": 193, "header": "tr|A0A5G2R0T2-1|A0A5G2R0T2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0T2-1" }, "locus": { "chromosome": "5", "start_pos": 375929, "end_pos": 375351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086372.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086372.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067821.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067821.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0T2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0T2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 193, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0T2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0T2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0T3-1", "uniprot_ac": "A0A5G2R0T3", "uniprot_id": "A0A5G2R0T3_PIG", "mass": { "chemical_mass": 12220.0, "monoisotopic_mass": 12220.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0T3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0T3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0T3", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0T3", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2R0T3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0T3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMWVHVSFSRKVLSRYMPKSGIAGSYGNSMYSFLRYLHSVLHSGCTNLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTSVRWYLVVVLILLLVCQARAFSPLSK", "length": 106, "header": "tr|A0A5G2R0T3-1|A0A5G2R0T3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0T3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0T3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3/entry", "sequence": { "sequence": "MNMWVHVSFSRKVLSRYMPKSGIAGSYGNSMYSFLRYLHSVLHSGCTNLHSHQQCRRVPFSPHPLQHLLFVDLLMMAILTSVRWYLVVVLILLLVCQARAFSPLSK", "length": 106, "header": "tr|A0A5G2R0T3-1|A0A5G2R0T3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0T3-1" }, "locus": { "chromosome": "18", "start_pos": 15288668, "end_pos": 15288223, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085886.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085886.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070723.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070723.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0T3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0T3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 106, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0T3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0T3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0U8-1", "uniprot_ac": "A0A5G2R0U8", "uniprot_id": "A0A5G2R0U8_PIG", "mass": { "chemical_mass": 33210.0, "monoisotopic_mass": 33210.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R0U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0U8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0U8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0U8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000041243", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041243", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31883", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31883", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31883:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31883:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15315", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15315", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0U8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAGAEDLQPHSPSIQQPTDQPPTQPTSGEERGSEVEETLSPDKDHTVSSPLRQSQAQTPGRDLGSLSGCWEERWKQGHLFFVSCLGFKSGSVIRAITQPCGPFDHSSNEPPPQPVAPVHTGRGPLASGDAIALKCELGGSHPRALSAGASPDECSVSLEKEREKVLAEGHSSESEKTRDASPRRSPERHPGGGKRPRSRSPGDQPPPLRKHLVTSLRTMSEAICQNMLQVYHQQGHSPPTREQLAQLRGPLFAAVHTFYAMANQAAYVFPADSWLVPTPLPEPQGPAKDGGEAQGCKDSPSRPQTACQ", "length": 309, "header": "tr|A0A5G2R0U8-1|A0A5G2R0U8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0U8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8/entry", "sequence": { "sequence": "MEAGAEDLQPHSPSIQQPTDQPPTQPTSGEERGSEVEETLSPDKDHTVSSPLRQSQAQTPGRDLGSLSGCWEERWKQGHLFFVSCLGFKSGSVIRAITQPCGPFDHSSNEPPPQPVAPVHTGRGPLASGDAIALKCELGGSHPRALSAGASPDECSVSLEKEREKVLAEGHSSESEKTRDASPRRSPERHPGGGKRPRSRSPGDQPPPLRKHLVTSLRTMSEAICQNMLQVYHQQGHSPPTREQLAQLRGPLFAAVHTFYAMANQAAYVFPADSWLVPTPLPEPQGPAKDGGEAQGCKDSPSRPQTACQ", "length": 309, "header": "tr|A0A5G2R0U8-1|A0A5G2R0U8_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R0U8-1" }, "locus": { "chromosome": "6", "start_pos": 56993280, "end_pos": 56991638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071944.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071944.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067836.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0U8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0U8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0U8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0U8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0U8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0X8-1", "uniprot_ac": "A0A5G2R0X8", "uniprot_id": "A0A5G2R0X8_PIG", "mass": { "chemical_mass": 78463.0, "monoisotopic_mass": 78463.0 }, "refseq": {}, "gene_names": [ { "name": "BRF1", "type": "recommended", "evidence": [ { "id": "A0A5G2R0X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ] } ], "protein_names": [ { "name": "Transcription factor IIIB 90 kDa subunit", "type": "recommended", "evidence": [ { "id": "A0A5G2R0X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8/entry#names_and_taxonomy" } ] }, { "name": "B-related factor 1", "type": "synonym", "evidence": [ { "id": "A0A5G2R0X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BRF1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8", "locus": {} } ], "crossref": [ { "id": "A0A5G2R0X8", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0X8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031710", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031710", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20553", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20553", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20554", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20554", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521669", "url": "https://www.ncbi.nlm.nih.gov/gene/100521669", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011665", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011665", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11618", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11618", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11618:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11618:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00382", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00382", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07741", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07741", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-76061", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76066", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AHP6", "url": "https://www.uniprot.org/uniprotkb/A0A287AHP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2U3", "url": "https://www.uniprot.org/uniprotkb/A0A287B2U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPALVLVGSACPRLQGLLQTLSGDARHCAAATLYRRFPRSPRTPGSRSAPRQPAGPLRGKPGPASRVREPGEVWSATSQPPPEQTAVTDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEEECDPPSYTAGQRKLRMKELERVLSKQLEEVEGEICSYQDAIEIELENSRPKAKGALASLTKDGSAEDGTSSPFGEEDAEDEELEAAASHLNKDFYQELLGSGIPGSSEAAGGPEGGVRPPALESLLGPLPTAASLGISDSIRECISSQSQDPKDPSADGELDLSGIDDLEIDRDPSVPRDAVLFQYILNEAETRVKAELWMRENAEYLREQREKEARIAKERELGVYKEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDLDSKGGGGQPRGDAGPQERAGAKKLSRRKRPASRSRASLVTSVGKRLRPMVSTQAAKKAAVGEASPPGPRSLAAEPARPTAVVVESGPVSYHPEEDADEEDADEEDAEPCVSALQMMGGSDYGCDGDDDDNY", "length": 718, "header": "tr|A0A5G2R0X8-1|A0A5G2R0X8_PIG Isoform 1 of Transcription factor IIIB 90 kDa subunit OS=Sus scrofa OX=9823 GN=BRF1 PE=3 SV=2 CANONICAL=A0A5G2R0X8-1" }, "isoforms": [ { "isoform_ac": "A0A287AHP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHP6/entry", "sequence": { "sequence": "MPALVLVGSACPRLQGLLQTLSGDARHCAAATLYRRFPRSPRTPGSRSAPRQPAGPLRGKPGPASRVREPGEVWSATSQPPPGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEEECDPPSYTAGQRKLRMKELERVLSKQLEEVEGEICSYQDAIEIELENSRPKAKGALASLTKDGSAEDGTSSPFGEEDAEDEELEAAASHLNKDFYQELLGSGIPGSSEAAGGPEGGVRPPALESLLGPLPTAASLGISDSIRECISSQSQDPKDPSADGELDLSGIDDLEIDRYILNEAETRVKAELWMRENAEYLREQREKEARIAKERELGVYKEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDLDSKGGGGQPRGDAGPQERAGAKKLSRRKRPASRSRASLVTSVGKRLRPMVSTQAAKKAAVGEASPPGPRSLAAEPARPTAVVVESGPVSYHPEEDADEEDADEEDAEPCVSALQMMGGSDYGCDGDDDDNY", "length": 706, "header": "tr|A0A287AHP6-1|A0A287AHP6_PIG Computationally mapped isoform of Transcription factor IIIB 90 kDa subunit OS=Sus scrofa OX=9823 GN=BRF1 PE=3 SV=2 CANONICAL=A0A5G2R0X8-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3376021, "end_pos": 3316173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049137.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049137.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043562.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043562.2" } ] } }, { "isoform_ac": "A0A287B2U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2U3/entry", "sequence": { "sequence": "MTGRVCRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGRRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEEECDPPSYTAGQRKLRMKELERVLSKQLEEVEGEICSYQDAIEIELENSRPKAKGALASLTKDGSAEDGTSSPFGEEDAEDEELEAAASHLNKDFYQELLGSGIPGSSEAAGGPEGGVRPPALESLLGPLPTAASLGISDSIRECISSQSQDPKDPSADGELDLSGIDDLEIDRYILNEAETRVKAELWMRENAEYLREQREKEARIAKERELGVYKEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDLDSKGGGGQPRGDAGPQERAGAKKLSRRKRPASRSRASLVTSVGKRLRPMVSTQAAKKAAVGEASPPGPRSLAAEPARPTAVVVESGPVSYHPEEDADEEDADEEDAEPCVSALQMMGGSDYGCDGDDDDNY", "length": 651, "header": "tr|A0A287B2U3-1|A0A287B2U3_PIG Computationally mapped isoform of Transcription factor IIIB 90 kDa subunit OS=Sus scrofa OX=9823 GN=BRF1 PE=3 SV=2 CANONICAL=A0A5G2R0X8-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3369605, "end_pos": 3316173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057152.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057152.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050763.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050763.2" } ] } }, { "isoform_ac": "A0A5G2R0X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8/entry", "sequence": { "sequence": "MPALVLVGSACPRLQGLLQTLSGDARHCAAATLYRRFPRSPRTPGSRSAPRQPAGPLRGKPGPASRVREPGEVWSATSQPPPEQTAVTDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEEECDPPSYTAGQRKLRMKELERVLSKQLEEVEGEICSYQDAIEIELENSRPKAKGALASLTKDGSAEDGTSSPFGEEDAEDEELEAAASHLNKDFYQELLGSGIPGSSEAAGGPEGGVRPPALESLLGPLPTAASLGISDSIRECISSQSQDPKDPSADGELDLSGIDDLEIDRDPSVPRDAVLFQYILNEAETRVKAELWMRENAEYLREQREKEARIAKERELGVYKEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDLDSKGGGGQPRGDAGPQERAGAKKLSRRKRPASRSRASLVTSVGKRLRPMVSTQAAKKAAVGEASPPGPRSLAAEPARPTAVVVESGPVSYHPEEDADEEDADEEDAEPCVSALQMMGGSDYGCDGDDDDNY", "length": 718, "header": "tr|A0A5G2R0X8-1|A0A5G2R0X8_PIG Isoform 1 of Transcription factor IIIB 90 kDa subunit OS=Sus scrofa OX=9823 GN=BRF1 PE=3 SV=2 CANONICAL=A0A5G2R0X8-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 3376021, "end_pos": 3316173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087032.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087032.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064156.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-76061", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 1 Promoter" }, { "id": "R-SSC-76066", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 2 Promoter" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "transcription preinitiation complex", "id": "GO:0097550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097550", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "transcription factor TFIIIB complex", "id": "GO:0000126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000126", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "RNA polymerase III type 3 promoter sequence-specific DNA binding", "id": "GO:0001006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001006", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "RNA polymerase III general transcription initiation factor activity", "id": "GO:0000995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000995", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transcription by RNA polymerase III", "id": "GO:0006383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006383", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "DNA-templated transcription initiation", "id": "GO:0006352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006352", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" }, { "name": "transcription preinitiation complex assembly", "id": "GO:0070897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070897", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 580, "end_pos": 582, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0X8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 718, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0X8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0X8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0X8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0X8" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 200, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 580, "end_pos": 582 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0Y2-1", "uniprot_ac": "A0A5G2R0Y2", "uniprot_id": "A0A5G2R0Y2_PIG", "mass": { "chemical_mass": 237404.0, "monoisotopic_mass": 237404.0 }, "refseq": {}, "gene_names": [ { "name": "COL6A6", "type": "recommended", "evidence": [ { "id": "A0A5G2R0Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ] } ], "protein_names": [ { "name": "Collagen type VI alpha 6 chain", "type": "synonym", "evidence": [ { "id": "A0A5G2R0Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Collagen VI acts as a cell-binding protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A0A6", "url": "https://www.uniprot.org/uniprotkb/A0A287A0A6#function" }, { "database": "UniProtKB", "id": "ARBA00043858", "url": "https://www.uniprot.org/uniprotkb/ARBA00043858#function" }, { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL6A6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2", "locus": { "chromosome": "13", "start_pos": 1817406, "end_pos": 1985799, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037430", "url": "https://www.ensembl.org/id/ENSSSCG00000037430" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037430", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037430", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01450", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01450", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01472", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01472", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22588", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22588", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22588:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22588:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-186797", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A0A6", "url": "https://www.uniprot.org/uniprotkb/A0A287A0A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMLLVFFLMIICAHVSVNQHPGPEYADVVFLVDSSDHLGIKSFPWVKMFINKMISSLPIEADKYRVGLAQYSDGLHNEFQLNTFKSKGPMLNHLKKNFGFLGGSLTYFSSRRDRKQYPPILVVMASADSEDAVEEAAEALRKDGVRIISVGMQRVSEETLKAMATGQFRYNLRTVRDLSAFSQNMTQILKEAIQYKDGTVNDILVEVCKGSSVADVVFLLDVSINGSWEDFDYLKEFLEESVSALDIKENCMRVSLVAYSNETKVLNPLSRGINKSEILQHIQSLSPRTGKVYTGAALRKIRKDVFTAQNGSRKNQGVPQIAVLVTHSPSADNVTKAAVNLRRQGVTVFTLGMEGASDTQLEKIASHPAEQYISKLKSFSDLAAHNQTFLKKLRKQITHTVSVLSEWTETLKSGCVDTEEADIYLLIDGSGSTQATDFQEMKTFLSDVVGMFNIAPQKVRVGAVQYADRWDLEFEINKYTNKHDVGKAIENIRQMGGNTNTGAALNFTLGLLQKAKQQRGNRVPYHLVVLTNGVSQDSVVGPANRLREELVHIYAIGVKEANQTQLREITGEEKRVYYVHDFDALKDIKNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFIKMKTFMKNLVSKSKIGADRVQVGVVQFSGDSKEEFQLDRYMSQSEIADAIDRMAHIGQNTCTGSALTFVSQYFSPAKGARPNVRKFLILITDGEAQDVVKDPAEALRQKGIIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQHIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDHDEYNIMKDFMIGLVKKADVGKNQVRFGALKYAKNPEVLFYLDRLGTKWEVISELQNDQPIGGDTYTAKALDFSDHMFTEDRGSRLHQGVPQVLIVITDGKSHDADELNATAKALRDKGILVLAVGIEGANVEELLAMAGSSDKYFFVETFGGLKGIFSDVSTSVCNSSKVDCEIEKVDLVFLLDGSNSIHPEDFKKMKNFLASVVQDFDVSVNRVQIGAAQFSHTYRPEFPLGMFTGKKEISFQIENIQQIFGYTHIGEALRQVGHYFRPDTGSRINAGTPQVLLVLTDGKSQDEVAQAAEELRHKGIDIYSVGIGDVDDQQLVQITGTADKKLTVHSFDELRKVKKRIVRNICTSGGDSNCFVDIVVGFDISTQQNGQTLLEGQSWMETYLQDILRAISSLSGVSCEVGTETQVSVAFQVTNAIEKYSPKFEIYSENILKNLKDITVKGPSLLNANLLSSLWDAFQNKSAARGKVALLFSDGLDDDVEKLEQKSEELRKEGLNALITVALDGATDSSDLADLLYIEFGKGFEYRTQFTLGMRDLGSRLSRQLVNVAERTCCCLFCKCVGEDGTMGEPGPAGKKGPPGFKGSDGYLGEEGIAGERGATGPVGEQGTKGCYGAKGPKGSRGLNGQEGEVGESGIDGLNGEQGDGGFPGVKGEKGDEGAQGIPGKRGISGDHGPKGLRGDPGVPGFDNSIEGPKGLKGEQGRQGEIGIPGPDGLAGSLGLKGPQVCIKTNQTGLPGPAGEAGIQGRLGSQGNKGEPGLLGEKGAIGLPGPRGLTGEIGDPGSPGETGPKGATGKTVSAGLPGEPGSPGELGPPGRKTCELIQYVQDHSREPRCPAHPTELVFMLDQSRGVTEPEFLRMKEMMLSLLRGLRVRENHCPAGARVAVLSYDSHARLLIRFSDAYKKDRLLREIEALPYERSLAARDIGKAMRFVSRNVFKRMLPGAHTRRIATFFSSAALEFSALDIIPVVIAFTNVPSVRRSFAIDDTGTFQVITVPSGTDYTPALEGLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDGSRHMGGAEFEDIRGFLGALLDHFDITPEPETSVTGDRVALLIHAPPNFLPNTQRSPVKTEFNLTTYRSKRLMKRHVEESVQQLSGEAFIGHALQWTLDNIFFRTPNPRRNKVIFVISAGETSHLDQEILKKESLRAKCQGYALFVFSLGPSWNDQELEDLASYPLDHHLVQLGRIHRPDHRYGVKFMKAFISSVRRAINKYPPINIKAKCNRLSSTNPQQPPRQLRSFVPGPHRATLKEDALQKVKFFQRRNYLSRVARGSRDNTVQHFTRNIPSIFRNGKRVIETAPKYDERSTPRV", "length": 2158, "header": "tr|A0A5G2R0Y2-1|A0A5G2R0Y2_PIG Isoform 1 of Collagen type VI alpha 6 chain OS=Sus scrofa OX=9823 GN=COL6A6 PE=1 SV=2 CANONICAL=A0A5G2R0Y2-1" }, "isoforms": [ { "isoform_ac": "A0A287A0A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0A6/entry", "sequence": { "sequence": "MKMLLVFFLMIICAHVSVNQHPGPEYADVVFLVDSSDHLGIKSFPWVKMFINKMISSLPIEADKYRVGLAQYSDGLHNEFQLNTFKSKGPMLNHLKKNFGFLGGSLTYFSSRRDRKQYPPILVVMASADSEDAVEEAAEALRKDGVRIISVGMQRVSEETLKAMATGQFRYNLRTVRDLSAFSQNMTQILKEAIQYKDGTVNDILVEVCKGSSVADVVFLLDVSINGSWEDFDYLKEFLEESVSALDIKENCMRVSLVAYSNETKVLNPLSRGINKSEILQHIQSLSPRTGKVYTGAALRKIRKDVFTAQNGSRKNQGVPQIAVLVTHSPSADNVTKAAVNLRRQGVTVFTLGMEGASDTQLEKIASHPAEQYISKLKSFSDLAAHNQTFLKKLRKQITHTVSVLSEWTETLKSGCVDTEEADIYLLIDGSGSTQATDFQEMKTFLSDVVGMFNIAPQKVRVGAVQYADRWDLEFEINKYTNKHDVGKAIENIRQMGGNTNTGAALNFTLGLLQKAKQQRGNRVPYHLVVLTNGVSQDSVVGPANRLREELVHIYAIGVKEANQTQLREITGEEKRVYYVHDFDALKDIKNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFIKMKTFMKNLVSKSKIGADRVQVGVVQFSGDSKEEFQLDRYMSQSEIADAIDRMAHIGQNTCTGSALTFVSQYFSPAKGARPNVRKFLILITDGEAQDVVKDPAEALRQKGIIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQHIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDHDEYNIMKDFMIGLVKKADVGKNQVRFGALKYAKNPEVLFYLDRLGTKWEVISELQNDQPIGGDTYTAKALDFSDHMFTEDRGSRLHQGVPQVLIVITDGKSHDADELNATAKALRDKGILVLAVGIEGANVEELLAMAGSSDKYFFVETFGGLKGIFSDVSTSVCNSSKVDCEIEKVDLVFLLDGSNSIHPEDFKKMKNFLASVVQDFDVSVNRVQIGAAQFSHTYRPEFPLGMFTGKKEISFQIENIQQIFGYTHIGEALRQVGHYFRPDTGSRINAGTPQVLLVLTDGKSQDEVAQAAEELRHKGIDIYSVGIGDVDDQQLVQITGTADKKLTVHSFDELRKVKKRIVRNICTSGGDSNCFVDIVVGFDISTQQNGQTLLEGQSWMETYLQDILRAISSLSGVSCEVGTETQVSVAFQVTNAIEKYSPKFEIYSENILKNLKDITVKGPSLLNANLLSSLWDAFQNKSAARGKVALLFSDGLDDDVEKLEQKSEELRKEGLNALITVALDGATDSSDLADLLYIEFGKGFEYRTQFTLGMRDLGSRLSRQLVNVAERTCCCLFCKCVGEDGTMGEPGPAGKKGPPGFKGSDGYLGEEGIAGERGATGPVGEQGTKGCYGAKGPKGSRGLNGQEVMIPNIIYLPICCLEIFLFLRLLARKLTSVSTGSLLSHICLFLLQGRRGWPGPPGMPGTRRKTVRAPFDKGAHCSRNLYWGEMADCGGQAGWFSHPTELVFMLDQSRGVTEPEFLRMKEMMLSLLRGLRVRENHCPAGARVAVLSYDSHARLLIRFSDAYKKDRLLREIEALPYERSLAARDIGKAMRFVSRNVFKRMLPGAHTRRIATFFSSAALEFSALDIIPVVIAFTNVPSVRRSFAIDDTGTFQVITVPSGTDYTPALEGLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDGSRHMGGAEFEDIRGFLGALLDHFDITPEPETSVTGDRVALLIHAPPNFLPNTQRSPVKTEFNLTTYRSKRLMKRHVEESVQQLSGEAFIGHALQWTLDNIFFRTPNPRRNKVIFVISAGETSHLDQEILKKESLRAKCQGYALFVFSLGPSWNDQELEDLASYPLDHHLVQLGRIHRPDHRYGVKFMKAFISSVRRAINKYPPINIKAKCNRLSSTNPQQPPRQLRSFVPGPHRATLKEDALQKVKFFQRRNYLSRVARGSRDNTVQHFTRNIPSIFRNGKRVIETAPKYDERSTPRV", "length": 2044, "header": "tr|A0A287A0A6-1|A0A287A0A6_PIG Computationally mapped isoform of Collagen type VI alpha 6 chain OS=Sus scrofa OX=9823 GN=COL6A6 PE=1 SV=2 CANONICAL=A0A5G2R0Y2-1" }, "locus": { "chromosome": "13", "start_pos": 1948536, "end_pos": 1819085, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053187.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053187.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037369.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037369.2" } ] } }, { "isoform_ac": "A0A5G2R0Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2/entry", "sequence": { "sequence": "MKMLLVFFLMIICAHVSVNQHPGPEYADVVFLVDSSDHLGIKSFPWVKMFINKMISSLPIEADKYRVGLAQYSDGLHNEFQLNTFKSKGPMLNHLKKNFGFLGGSLTYFSSRRDRKQYPPILVVMASADSEDAVEEAAEALRKDGVRIISVGMQRVSEETLKAMATGQFRYNLRTVRDLSAFSQNMTQILKEAIQYKDGTVNDILVEVCKGSSVADVVFLLDVSINGSWEDFDYLKEFLEESVSALDIKENCMRVSLVAYSNETKVLNPLSRGINKSEILQHIQSLSPRTGKVYTGAALRKIRKDVFTAQNGSRKNQGVPQIAVLVTHSPSADNVTKAAVNLRRQGVTVFTLGMEGASDTQLEKIASHPAEQYISKLKSFSDLAAHNQTFLKKLRKQITHTVSVLSEWTETLKSGCVDTEEADIYLLIDGSGSTQATDFQEMKTFLSDVVGMFNIAPQKVRVGAVQYADRWDLEFEINKYTNKHDVGKAIENIRQMGGNTNTGAALNFTLGLLQKAKQQRGNRVPYHLVVLTNGVSQDSVVGPANRLREELVHIYAIGVKEANQTQLREITGEEKRVYYVHDFDALKDIKNQVVQEICAEEACKEMKADIMFLVDSSGSIGLENFIKMKTFMKNLVSKSKIGADRVQVGVVQFSGDSKEEFQLDRYMSQSEIADAIDRMAHIGQNTCTGSALTFVSQYFSPAKGARPNVRKFLILITDGEAQDVVKDPAEALRQKGIIIYSVGVFGSNVTQLEEISGRPEMVFYVENFDILQHIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDHDEYNIMKDFMIGLVKKADVGKNQVRFGALKYAKNPEVLFYLDRLGTKWEVISELQNDQPIGGDTYTAKALDFSDHMFTEDRGSRLHQGVPQVLIVITDGKSHDADELNATAKALRDKGILVLAVGIEGANVEELLAMAGSSDKYFFVETFGGLKGIFSDVSTSVCNSSKVDCEIEKVDLVFLLDGSNSIHPEDFKKMKNFLASVVQDFDVSVNRVQIGAAQFSHTYRPEFPLGMFTGKKEISFQIENIQQIFGYTHIGEALRQVGHYFRPDTGSRINAGTPQVLLVLTDGKSQDEVAQAAEELRHKGIDIYSVGIGDVDDQQLVQITGTADKKLTVHSFDELRKVKKRIVRNICTSGGDSNCFVDIVVGFDISTQQNGQTLLEGQSWMETYLQDILRAISSLSGVSCEVGTETQVSVAFQVTNAIEKYSPKFEIYSENILKNLKDITVKGPSLLNANLLSSLWDAFQNKSAARGKVALLFSDGLDDDVEKLEQKSEELRKEGLNALITVALDGATDSSDLADLLYIEFGKGFEYRTQFTLGMRDLGSRLSRQLVNVAERTCCCLFCKCVGEDGTMGEPGPAGKKGPPGFKGSDGYLGEEGIAGERGATGPVGEQGTKGCYGAKGPKGSRGLNGQEGEVGESGIDGLNGEQGDGGFPGVKGEKGDEGAQGIPGKRGISGDHGPKGLRGDPGVPGFDNSIEGPKGLKGEQGRQGEIGIPGPDGLAGSLGLKGPQVCIKTNQTGLPGPAGEAGIQGRLGSQGNKGEPGLLGEKGAIGLPGPRGLTGEIGDPGSPGETGPKGATGKTVSAGLPGEPGSPGELGPPGRKTCELIQYVQDHSREPRCPAHPTELVFMLDQSRGVTEPEFLRMKEMMLSLLRGLRVRENHCPAGARVAVLSYDSHARLLIRFSDAYKKDRLLREIEALPYERSLAARDIGKAMRFVSRNVFKRMLPGAHTRRIATFFSSAALEFSALDIIPVVIAFTNVPSVRRSFAIDDTGTFQVITVPSGTDYTPALEGLQRCTFCYDVCKPDASCDQARPPPVQSYMDAAFLLDGSRHMGGAEFEDIRGFLGALLDHFDITPEPETSVTGDRVALLIHAPPNFLPNTQRSPVKTEFNLTTYRSKRLMKRHVEESVQQLSGEAFIGHALQWTLDNIFFRTPNPRRNKVIFVISAGETSHLDQEILKKESLRAKCQGYALFVFSLGPSWNDQELEDLASYPLDHHLVQLGRIHRPDHRYGVKFMKAFISSVRRAINKYPPINIKAKCNRLSSTNPQQPPRQLRSFVPGPHRATLKEDALQKVKFFQRRNYLSRVARGSRDNTVQHFTRNIPSIFRNGKRVIETAPKYDERSTPRV", "length": 2158, "header": "tr|A0A5G2R0Y2-1|A0A5G2R0Y2_PIG Isoform 1 of Collagen type VI alpha 6 chain OS=Sus scrofa OX=9823 GN=COL6A6 PE=1 SV=2 CANONICAL=A0A5G2R0Y2-1" }, "locus": { "chromosome": "13", "start_pos": 1948536, "end_pos": 1819085, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070934.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070934.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070825.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070825.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-186797", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-186797", "resource": "Reactome", "description": "Signaling by PDGF" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-3000178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "resource": "Reactome", "description": "ECM proteoglycans" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "pmid": "" }, { "name": "collagen type VI trimer", "id": "GO:0005589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005589", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "pmid": "" }, { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Y2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1277, "end_pos": 1279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1547, "end_pos": 1549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1922, "end_pos": 1924, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" }, { "start_pos": 748, "end_pos": 750, "annotation": "n_glycosylation_sequon" }, { "start_pos": 917, "end_pos": 919, "annotation": "n_glycosylation_sequon" }, { "start_pos": 975, "end_pos": 977, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Y2" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 194, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1277, "end_pos": 1279 }, { "start_pos": 1547, "end_pos": 1549 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 1922, "end_pos": 1924 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 275, "end_pos": 277 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 563, "end_pos": 565 }, { "start_pos": 748, "end_pos": 750 }, { "start_pos": 917, "end_pos": 919 }, { "start_pos": 975, "end_pos": 977 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R0Z0-1", "uniprot_ac": "A0A5G2R0Z0", "uniprot_id": "A0A5G2R0Z0_PIG", "mass": { "chemical_mass": 85927.0, "monoisotopic_mass": 85927.0 }, "refseq": {}, "gene_names": [ { "name": "SAMD11", "type": "recommended", "evidence": [ { "id": "A0A5G2R0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ] } ], "protein_names": [ { "name": "Sterile alpha motif domain containing 11", "type": "synonym", "evidence": [ { "id": "A0A5G2R0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAMD11", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0", "locus": { "chromosome": "6", "start_pos": 63308482, "end_pos": 63287713, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033509", "url": "https://www.ensembl.org/id/ENSSSCG00000033509" } ] } } ], "crossref": [ { "id": "A0A5G2R0Z0", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0Z0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033509", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033509", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09579", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09579", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10417", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10417", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10417:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10417:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01342", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01342", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BFM2", "url": "https://www.uniprot.org/uniprotkb/A0A287BFM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAVKKELPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPIASLPAATAGYEALLPPPLRASRAYLSLHEAAPHLHLPRDPLTLERFAATAAAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPPARVLKKELTPSFSASDGDSDGSGPTCGQRLGLKQEDDPHVHIMKRRVHTHWDVNISFRETSCSQDSDLPTLISSVHRSRHLVMPEHQSRCEFQRGSVEIGLGAAGDLLGKRLGRSPRITSDCPLEKKARSKSPQDLLRVRQEVAAAAVRSPSGLEIHLPSSSPGQRRKQGLTQHRDSTTSAGTSSFSERELSQPPPLLSPQNAPHIALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMLARQQELLRKQNLARLEMSAELLRQKELESAHRPQLLGPEAALRPPEGAEELQRRGAMLVLRHSSAPLLALPPQGPPGPGPPTPPPPREPAHRAPRKGASSPASTRPSEPKENTGAGLWAQDGSEDEPPKDLDGEDPEMVAAGGQGPTSGQAPTGGIGSEGKGLLSGSMLPPPLPLGFPYAVSPYFHTGTVGGLFMDGEEATAPEDVSKWTVDDVCSFVGGLSGCGEYAPVFREQGIDGETLPLLTEEHLLTTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPTLRAPDRELTSGERPLSPTMAPSPYGGTHPPVGRASPKQENGSMALLPGATDPSQPLC", "length": 805, "header": "tr|A0A5G2R0Z0-1|A0A5G2R0Z0_PIG Isoform 1 of Sterile alpha motif domain containing 11 OS=Sus scrofa OX=9823 GN=SAMD11 PE=1 SV=2 CANONICAL=A0A5G2R0Z0-1" }, "isoforms": [ { "isoform_ac": "A0A287BFM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFM2/entry", "sequence": { "sequence": "MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPPARVLKKELTPSFSASDGDSDGSGPTCGQRLGLKQEDDPHVHIMKRRVHTHWDVNISFRETSCSQDSDLPTLISSVHRSRHLVMPEHQSRCEFQRGSVEIGLGAAGDLLGKRLGRSPRITSDCPLEKKARSKSPQETLLLPELGPSMAPEDHYRRLVSALSEASNFEDPQRLYHLGLPSHGICPSPCHLSTHDLLRVRQEVAAAAVRSPSGLEIHLPSSSPGQRRKQGLTQHRDSTTSAGTSSFSERELSQPPPLLSPQNAPHIALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMLARQQELLRKQNLARLEMSAELLRQKELESAHRPQLLGPEAALRPPEGAEELQRRGAMLVLRHSSAPLLALPPQGPPGPGPPTPPPPREPAHRAPRKGASSPASTRPSEPKENTGAGLWAQDGSEDEPPKDLDGEDPEMVAAGGQGPTSGQAPTGGIGSEGKGLLSGSMLPPPLPLGFPYAVSPYFHTGTVGGLFMDGEEATAPEDVSKWTVDDVCSFVGGLSGCGEYAPVFREQGIDGETLPLLTEEHLLTTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPTLRAPDRELTSGERPLSPTMAPSPYGGTHPPVGRASPKQENGSMALLPGATDPSQPLC", "length": 683, "header": "tr|A0A287BFM2-1|A0A287BFM2_PIG Computationally mapped isoform of Sterile alpha motif domain containing 11 OS=Sus scrofa OX=9823 GN=SAMD11 PE=1 SV=2 CANONICAL=A0A5G2R0Z0-1" }, "locus": { "chromosome": "6", "start_pos": 63307738, "end_pos": 63289713, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043807.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043807.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055328.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055328.2" } ] } }, { "isoform_ac": "A0A5G2R0Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0/entry", "sequence": { "sequence": "MPAVKKELPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPIASLPAATAGYEALLPPPLRASRAYLSLHEAAPHLHLPRDPLTLERFAATAAAAPDFQPLLDNGEPCIEVECGANRALLYVRKLCQGSKGPSIRHRGEWLTPNEFQFVSGRETAKDWKRSIRHKGKSLKTLMSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPPARVLKKELTPSFSASDGDSDGSGPTCGQRLGLKQEDDPHVHIMKRRVHTHWDVNISFRETSCSQDSDLPTLISSVHRSRHLVMPEHQSRCEFQRGSVEIGLGAAGDLLGKRLGRSPRITSDCPLEKKARSKSPQDLLRVRQEVAAAAVRSPSGLEIHLPSSSPGQRRKQGLTQHRDSTTSAGTSSFSERELSQPPPLLSPQNAPHIALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMLARQQELLRKQNLARLEMSAELLRQKELESAHRPQLLGPEAALRPPEGAEELQRRGAMLVLRHSSAPLLALPPQGPPGPGPPTPPPPREPAHRAPRKGASSPASTRPSEPKENTGAGLWAQDGSEDEPPKDLDGEDPEMVAAGGQGPTSGQAPTGGIGSEGKGLLSGSMLPPPLPLGFPYAVSPYFHTGTVGGLFMDGEEATAPEDVSKWTVDDVCSFVGGLSGCGEYAPVFREQGIDGETLPLLTEEHLLTTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPLQPPTLRAPDRELTSGERPLSPTMAPSPYGGTHPPVGRASPKQENGSMALLPGATDPSQPLC", "length": 805, "header": "tr|A0A5G2R0Z0-1|A0A5G2R0Z0_PIG Isoform 1 of Sterile alpha motif domain containing 11 OS=Sus scrofa OX=9823 GN=SAMD11 PE=1 SV=2 CANONICAL=A0A5G2R0Z0-1" }, "locus": { "chromosome": "6", "start_pos": 63307738, "end_pos": 63288058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067130.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067130.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070778.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070778.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 243, "start_aa": "Thr", "end_pos": 243, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr243", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 605, "start_aa": "Thr", "end_pos": 605, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr605", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0Z0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 788, "end_pos": 790, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R0Z0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 805, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R0Z0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R0Z0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 667, "end_pos": 713, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A5G2R0Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Z0" }, { "id": "PS50864", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50864" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAND", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 186, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 243, 540, 605 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 }, { "start_pos": 788, "end_pos": 790 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R109-1", "uniprot_ac": "A0A5G2R109", "uniprot_id": "A0A5G2R109_PIG", "mass": { "chemical_mass": 17494.0, "monoisotopic_mass": 17494.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R109", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R109", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000050786", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050786", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R109", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R109-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSNINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQFIQPNSKKANQSMEKWAKYLNRHFSKEDIQMANKHMKKC", "length": 149, "header": "tr|A0A5G2R109-1|A0A5G2R109_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R109-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R109-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109/entry", "sequence": { "sequence": "MKLEHTLTPCTKINSKWLKDLNIRQDTIKLLEENIGKTLSNINIMNIFSGQSPKAIEIRAKINPWDLIKLKSFCTAKETKKKTKRQLTEWEKIVSNDATDKGLISRIYKQFIQPNSKKANQSMEKWAKYLNRHFSKEDIQMANKHMKKC", "length": 149, "header": "tr|A0A5G2R109-1|A0A5G2R109_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R109-1" }, "locus": { "chromosome": "18", "start_pos": 28253454, "end_pos": 28253008, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077348.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077348.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060098.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060098.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R109", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R109" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R111-1", "uniprot_ac": "A0A5G2R111", "uniprot_id": "A0A5G2R111_PIG", "mass": { "chemical_mass": 27599.0, "monoisotopic_mass": 27599.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Neuroblastoma breakpoint family member 6-like protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R111", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111", "locus": {} } ], "crossref": [ { "id": "A0A5G2R111", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R111", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044715", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044715", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR055306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14199:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14199:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R111", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R111-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALALLPRVTMAVSLGPSSDLRAQHKLMRENQELQRQLAQSKQDFRDLREKFLVSEATAYSLANQLQKYQCEGHRDIIESVLGEKLEFKVVKLAERLAEDPAELDVLIHAQARELTQLRQKVKEGRDDCVLLVQHLTDLLTHKDLDKDQGQELREQLTEGHRLAEHLARKFSPGKGATDPDCTGQLHGPQESSHLTRHVLGICRLCLQTLVFLGPELNPCHSSDNSRSLTHWAPRELLTRNVF", "length": 243, "header": "tr|A0A5G2R111-1|A0A5G2R111_PIG Isoform 1 of Neuroblastoma breakpoint family member 6-like protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R111-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R111-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111/entry", "sequence": { "sequence": "MALALLPRVTMAVSLGPSSDLRAQHKLMRENQELQRQLAQSKQDFRDLREKFLVSEATAYSLANQLQKYQCEGHRDIIESVLGEKLEFKVVKLAERLAEDPAELDVLIHAQARELTQLRQKVKEGRDDCVLLVQHLTDLLTHKDLDKDQGQELREQLTEGHRLAEHLARKFSPGKGATDPDCTGQLHGPQESSHLTRHVLGICRLCLQTLVFLGPELNPCHSSDNSRSLTHWAPRELLTRNVF", "length": 243, "header": "tr|A0A5G2R111-1|A0A5G2R111_PIG Isoform 1 of Neuroblastoma breakpoint family member 6-like protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A5G2R111-1" }, "locus": { "chromosome": "4", "start_pos": 101299294, "end_pos": 101296473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070554.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070554.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064191.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064191.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R111", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R111" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R111-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 243, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R111-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R111" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R112-1", "uniprot_ac": "A0A5G2R112", "uniprot_id": "A0A5G2R112_PIG", "mass": { "chemical_mass": 9612.0, "monoisotopic_mass": 9612.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "BPTI/Kunitz inhibitor domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R112", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R112", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112", "locus": {} } ], "crossref": [ { "id": "A0A5G2R112", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R112", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043442", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043442", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00109", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00109", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF00014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R112", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R112-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLWGSLPLLLLTLHQELRSELGQGKDVSANICKLPTENGLCGGSHLQFYNGRTFECEPFYYSCCNGQDNFLRKQIREKICQDI", "length": 84, "header": "tr|A0A5G2R112-1|A0A5G2R112_PIG Isoform 1 of BPTI/Kunitz inhibitor domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R112-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R112-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112/entry", "sequence": { "sequence": "MQLWGSLPLLLLTLHQELRSELGQGKDVSANICKLPTENGLCGGSHLQFYNGRTFECEPFYYSCCNGQDNFLRKQIREKICQDI", "length": 84, "header": "tr|A0A5G2R112-1|A0A5G2R112_PIG Isoform 1 of BPTI/Kunitz inhibitor domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R112-1" }, "locus": { "chromosome": "17", "start_pos": 47832577, "end_pos": 47830991, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074021.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074021.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070855.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070855.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R112", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R112", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R112-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 84, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R112-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R112" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R112", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R112" }, { "id": "PS50279", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50279" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BPTI/Kunitz inhibitor", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 81, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R136-1", "uniprot_ac": "A0A5G2R136", "uniprot_id": "A0A5G2R136_PIG", "mass": { "chemical_mass": 31065.0, "monoisotopic_mass": 31065.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Retrovirus-related Pol polyprotein LINE-1", "type": "recommended", "evidence": [ { "id": "A0A5G2R136", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R136", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136", "locus": {} } ], "crossref": [ { "id": "A0A5G2R136", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R136", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047194", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047194", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R136", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R136-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIFSGQSPKVTEIRAKINPWDLIKLKSFCTAKETQKKTKRQLAEWEKIVSNDATNKGLISRIYKQLIQLNSKKANHLMEKWAKDLDRLFSKEDIQMTNKHMKKCSTSLIVREMQIKTTTRYHLTPVRMAIIKKYTKNKYWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKKWYIYTVEYYSAIKKNVICSNMGGTRESHPE", "length": 261, "header": "tr|A0A5G2R136-1|A0A5G2R136_PIG Isoform 1 of Retrovirus-related Pol polyprotein LINE-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R136-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R136-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136/entry", "sequence": { "sequence": "MNIFSGQSPKVTEIRAKINPWDLIKLKSFCTAKETQKKTKRQLAEWEKIVSNDATNKGLISRIYKQLIQLNSKKANHLMEKWAKDLDRLFSKEDIQMTNKHMKKCSTSLIVREMQIKTTTRYHLTPVRMAIIKKYTKNKYWRGCGEKGTLLHCWWECKLVQPLWRTVWRYLRNLYIELPYDPTIPLLGIYPDKTLLKRDTCTRMFIAALFTIARTWKQPKCPSTDDWIRKKWYIYTVEYYSAIKKNVICSNMGGTRESHPE", "length": 261, "header": "tr|A0A5G2R136-1|A0A5G2R136_PIG Isoform 1 of Retrovirus-related Pol polyprotein LINE-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R136-1" }, "locus": { "chromosome": "4", "start_pos": 25311758, "end_pos": 25310976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082767.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082767.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070880.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070880.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R136", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R136" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R136-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 261, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R136-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R136" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R150-1", "uniprot_ac": "A0A5G2R150", "uniprot_id": "A0A5G2R150_PIG", "mass": { "chemical_mass": 12739.0, "monoisotopic_mass": 12739.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R150", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R150", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150", "locus": {} } ], "crossref": [ { "id": "A0A5G2R150", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R150", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047152", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047152", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R150", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R150-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9G3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPFTQNSIWQIVEAQAQQGKDTHSIFDIIGKEIQAKIVEHDRCLAFHDFPLQSGRASVSFLKMEGKKAFSSILVLSELCYRRKYNSMSWLSPLPSLFQHFPGFTGLGDLSR", "length": 112, "header": "tr|A0A5G2R150-1|A0A5G2R150_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R150-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R150-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150/entry", "sequence": { "sequence": "MCPFTQNSIWQIVEAQAQQGKDTHSIFDIIGKEIQAKIVEHDRCLAFHDFPLQSGRASVSFLKMEGKKAFSSILVLSELCYRRKYNSMSWLSPLPSLFQHFPGFTGLGDLSR", "length": 112, "header": "tr|A0A5G2R150-1|A0A5G2R150_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R150-1" }, "locus": { "chromosome": "7", "start_pos": 20914475, "end_pos": 20912749, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084933.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084933.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067936.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067936.1" } ] } }, { "isoform_ac": "A0A5G2R9G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9G3/entry", "sequence": { "sequence": "MCPFTQNSIWQIVEAQAQQGKDTHSIFDIIGKEIQAKIVEHDRCLAFHDFPLQSGRASVSFLKMEGKKAFSSILYNLLKEMSILYILVLYILTYLLV", "length": 97, "header": "tr|A0A5G2R9G3-1|A0A5G2R9G3_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R150-1" }, "locus": { "chromosome": "7", "start_pos": 20914475, "end_pos": 20913284, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088356.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088356.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070764.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070764.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R150", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R150" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R150-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R150-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R150" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R153-1", "uniprot_ac": "A0A5G2R153", "uniprot_id": "A0A5G2R153_PIG", "mass": { "chemical_mass": 43842.0, "monoisotopic_mass": 43842.0 }, "refseq": {}, "gene_names": [ { "name": "C2orf69", "type": "recommended", "evidence": [ { "id": "A0A5G2R153", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153" } ] } ], "protein_names": [ { "name": "Chromosome 2 open reading frame 69", "type": "synonym", "evidence": [ { "id": "A0A5G2R153", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R153", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2orf69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153", "locus": { "chromosome": "15", "start_pos": 103560941, "end_pos": 103542938, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016086", "url": "https://www.ensembl.org/id/ENSSSCG00000016086" } ] } } ], "crossref": [ { "id": "A0A5G2R153", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R153", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016086", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016086", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NSAPMNE", "url": "https://omabrowser.org/oma/group/NSAPMNE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31296:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31296:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R153", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R153-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI73", "url": "https://www.uniprot.org/uniprotkb/F1SI73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI73-1", "url": "https://www.uniprot.org/uniprotkb/F1SI73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGFRLLRSPPLLLLLPQLGIGIAATCSQARTMNLGGSSSSGGALCSSAEGLRPQCLRLSTVPGADPQRCNELLLLAAGAVAAGEGQEPRNLPGDPTKVEPQTPPQHHVLYFPGDVQNYHEIMTRHPENYQWENWSLENVATILAHRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHNTDFGAFKHLYTLLVNAFNLSQKSLLSKKNVKDLNKDSKASNCRSGSSHTTNGCQGEKERTCEKFDESAMSFYPPSLNGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKNIKTMYWLDGGHSGGSNTWITYSEVLKEFAQTGIIVHTHVTPYQVRDPMRSWIGKEHKKFVQILGDFGMQVTSHIHFANEVPSIDNHFRVHEVF", "length": 392, "header": "tr|A0A5G2R153-1|A0A5G2R153_PIG Isoform 1 of Chromosome 2 open reading frame 69 OS=Sus scrofa OX=9823 GN=C2orf69 PE=4 SV=2 CANONICAL=A0A5G2R153-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R153-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153/entry", "sequence": { "sequence": "MWGFRLLRSPPLLLLLPQLGIGIAATCSQARTMNLGGSSSSGGALCSSAEGLRPQCLRLSTVPGADPQRCNELLLLAAGAVAAGEGQEPRNLPGDPTKVEPQTPPQHHVLYFPGDVQNYHEIMTRHPENYQWENWSLENVATILAHRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHNTDFGAFKHLYTLLVNAFNLSQKSLLSKKNVKDLNKDSKASNCRSGSSHTTNGCQGEKERTCEKFDESAMSFYPPSLNGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKNIKTMYWLDGGHSGGSNTWITYSEVLKEFAQTGIIVHTHVTPYQVRDPMRSWIGKEHKKFVQILGDFGMQVTSHIHFANEVPSIDNHFRVHEVF", "length": 392, "header": "tr|A0A5G2R153-1|A0A5G2R153_PIG Isoform 1 of Chromosome 2 open reading frame 69 OS=Sus scrofa OX=9823 GN=C2orf69 PE=4 SV=2 CANONICAL=A0A5G2R153-1" }, "locus": { "chromosome": "15", "start_pos": 103553539, "end_pos": 103543019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074170.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074170.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067941.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067941.2" } ] } }, { "isoform_ac": "F1SI73-1", "url": "https://www.uniprot.org/uniprotkb/F1SI73/entry", "sequence": { "sequence": "MWGFRLLRSPPLLLLLPQLGIGIAATCSQARTMNLGGSSSSGGALCSSAEGLRPQCLRLSTVPGADPQRCNELLLLAAGAVAAGEGQEPRNLPGDPTKVEPQTPPQHHVLYFPGDVQNYHEIMTRHPENYQWENWSLENVATILAHRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHNTDFGAFKHLYTLLVNAFNLSQKSLLSKKNVKDLNKDSKASNCRSGSSHTTNGCQGEKERTCEKFDESAMSFYPPSLNGASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKNIKTMYWLDGGHSGGSNTWITYSEVLKEFAQTGIIVHTHVTPYQVRDPMRSWIGKEHKKFVQILGDFDKYILRNQDLMNVNPY", "length": 381, "header": "tr|F1SI73-1|F1SI73_PIG Computationally mapped isoform of Chromosome 2 open reading frame 69 OS=Sus scrofa OX=9823 GN=C2orf69 PE=4 SV=4 CANONICAL=A0A5G2R153-1" }, "locus": { "chromosome": "15", "start_pos": 103554673, "end_pos": 103543019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017514.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017514.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017042.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017042.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R153", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R153", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "oxidative phosphorylation", "id": "GO:0006119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006119", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R153", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R153" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R153-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 392, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R153-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R153" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 202, "end_pos": 204 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R160-1", "uniprot_ac": "A0A5G2R160", "uniprot_id": "A0A5G2R160_PIG", "mass": { "chemical_mass": 11230.0, "monoisotopic_mass": 11230.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "KRAB domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A5G2R160", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160", "locus": {} } ], "crossref": [ { "id": "A0A5G2R160", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R160", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000047341", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000047341", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R160-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PHPPPPPRRTLGKAWPGQGRPGAVKFADVAAYFFQEEWGCLRPAQRALDRDVMREIYRHLGALGFAGLKPALISWMEGRKEVWRPEAEDPKKGRGTQVLG", "length": 100, "header": "tr|A0A5G2R160-1|A0A5G2R160_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R160-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R160-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160/entry", "sequence": { "sequence": "PHPPPPPRRTLGKAWPGQGRPGAVKFADVAAYFFQEEWGCLRPAQRALDRDVMREIYRHLGALGFAGLKPALISWMEGRKEVWRPEAEDPKKGRGTQVLG", "length": 100, "header": "tr|A0A5G2R160-1|A0A5G2R160_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R160-1" }, "locus": { "chromosome": "3", "start_pos": 17762503, "end_pos": 17761945, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082821.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082821.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070100.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070100.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R160", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R160-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 100, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R160-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R160" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A5G2R160", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R160" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 95, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S8T4-1", "uniprot_ac": "F1S8T4", "uniprot_id": "F1S8T4_PIG", "mass": { "chemical_mass": 78723.0, "monoisotopic_mass": 78723.0 }, "refseq": {}, "gene_names": [ { "name": "ARMH3", "type": "recommended", "evidence": [ { "id": "F1S8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ] } ], "protein_names": [ { "name": "Armadillo like helical domain containing 3", "type": "synonym", "evidence": [ { "id": "F1S8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8T4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARMH3", "url": "https://www.uniprot.org/uniprotkb/F1S8T4", "locus": { "chromosome": "14", "start_pos": 112877308, "end_pos": 113072897, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010571", "url": "https://www.ensembl.org/id/ENSSSCG00000010571" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010571", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010571", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YEATHLN", "url": "https://omabrowser.org/oma/group/YEATHLN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8T4", "url": "https://www.orthodb.org/?gene=F1S8T4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13608", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13608", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13608:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13608:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TW20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TW20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TW20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TW20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TYQ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TYQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TYR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TYR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R168", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R168", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R168-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R168-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D5U1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D5U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D5U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D5U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1HAX7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HAX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1HAX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HAX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T4-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 689, "header": "tr|F1S8T4-1|F1S8T4_PIG Isoform 1 of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TW20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TW20/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNLNLFLFRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 681, "header": "tr|A0A4X1TW20-1|A0A4X1TW20_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112880022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083856.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083856.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070244.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070244.1" } ] } }, { "isoform_ac": "A0A4X1TYQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYQ2/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 650, "header": "tr|A0A4X1TYQ2-1|A0A4X1TYQ2_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112880022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040717.1", "url": "https://www.ensembl.org/id/ENSSSCT00000040717.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057897.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057897.1" } ] } }, { "isoform_ac": "A0A4X1TYR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYR5/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMGARKSSMRTL", "length": 578, "header": "tr|A0A4X1TYR5-1|A0A4X1TYR5_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112987787, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050290.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050290.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051398.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051398.1" } ] } }, { "isoform_ac": "A0A5G2R168-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R168/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVSHCFPQKLLWGVVRARLLRSISKRFVDSTLTRMMASAFVPMKGLFSYLEGI", "length": 672, "header": "tr|A0A5G2R168-1|F1S8T4_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112924334, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071712.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071712.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070910.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070910.1" } ] } }, { "isoform_ac": "A0A8D1D5U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D5U1/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 667, "header": "tr|A0A8D1D5U1-1|A0A8D1D5U1_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112880022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085943.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085943.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062188.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062188.1" } ] } }, { "isoform_ac": "A0A8D1HAX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HAX7/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNLNLFLFRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMGKLTRTITH", "length": 569, "header": "tr|A0A8D1HAX7-1|A0A8D1HAX7_PIG Computationally mapped isoform of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112988488, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066186.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066186.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050384.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050384.2" } ] } }, { "isoform_ac": "F1S8T4-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T4/entry", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEIGMVTTPVNPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 689, "header": "tr|F1S8T4-1|F1S8T4_PIG Isoform 1 of Armadillo like helical domain containing 3 OS=Sus scrofa OX=9823 GN=ARMH3 PE=1 SV=1 CANONICAL=F1S8T4-1" }, "locus": { "chromosome": "14", "start_pos": 113059723, "end_pos": 112880022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011564.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011564.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011262.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011262.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 335, "start_aa": "Thr", "end_pos": 335, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr335", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 544, "start_aa": "Thr", "end_pos": 544, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr544", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R168", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R168" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M7P7-1", "protein_name": "Armadillo-like helical domain-containing protein 3 isoform X1", "gene_name": "Armh3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMQMKDNVNCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAPEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVRPTPPTPVTPLGTTPPSSDVISSVELSLDADVQTSNLLIAFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFALALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAAGKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5YBM4-1", "protein_name": "Armadillo-like helical domain containing 3", "gene_name": "Armh3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVSPTPTTPATPLGTTPPSSDVISSVELSLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYVRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLTLMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYCMVLRLSTNAGQWKEAASKVTHALVNIRAIVSHFTPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NK09-1", "protein_name": "Armadillo like helical domain containing 3", "gene_name": "ARMH3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQTEKKGGLLRKSSASKKPLKEKVVLMYDEIFTTEDPSKSNPRFWEELFLMKVNLEYLEGKLEALDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLVGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSSPLSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADADEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLMTTPASPIPTTPVTPLGTTPPSSDVISSAELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYIRCIQIVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMVVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQNFDNLYSMVLRISTNAGQWKEPASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEDQVLEVVRSNYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISINVRKNLAFNTLSQELLLKEFSTIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q551U4-1", "protein_name": "Armadillo-like helical domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIDKNVEQSSNKVEYNQPKSPITSILVNNNSSNNNNNSNNKNNNNEEEFDISSPLTLSPIANCGASGSNIDSSIDNTPHLLSQISTPPISSTSSITLLNDKKKGIYSTFLDLDYYNNTYLKNKQKILQPKLNQQKQQQQQQQQQPKTLTFSLDSQQQQQQQPQLQSPQLIDQQQQQQQQQQQQQQQQQQQQQQIPYHQRKHHISIRDGDDNDNEVDSFNILSQNQLIHQTFNNPQNHHYFSSTSPSLLYHHQQQTQLEQKPIYSSSSSSSILSSLSSSTISFYNSITSLFLTFPQTISTDPIIIREYERLKMLQEQQVGPRHTEILLRKEDGVGGRKALKEKFVEIYESFFNGEDPSENQPIFWEQLFLIKVNIPFLERCIILTSEENLLALKQNINKIFTQSCFWLKDSNSLRLTHIIETLSILLKSIFRKKFNNFGFDILNILCGIENSDQVFTDMIKDLEQLLKNSSIDKKVKIGVINLFTIIATATEYINQNTLLQYFMSVNIFDTLVTFLGEDDIPKQTQLNILTLLCYFSNFQKYEITNPYLKDLSNLSDPIKILKILNLITQNLKDHNEFFEQQYRDPNLGMVSRFSGYLSSWVYSPKVVQPLSFYETGSSLMILYELFYQNDHFVNMLVKGGLPFANGGENGSTCPDIIKQFFSFCAYLASDAQKDLKTIYSRMALLILLCICEKRELEDFFHDIKSTCYIFIYSKKSLFSDPKETEKHPLSCWTLDILSQFIKCNLKGKISMDVHQSAVDCIHRIVSYKKKTLNRLPYKWSELWSALFSLISMVSTLNISNDKIQLNQSIHVGISTVNIFNLFINYGDSFLPSPNDYDELFYEIIRSGQVIENFYQFILNQTTTGGQSVTSPSAAASASNPTTPTPLSPQQLPTITTTTTTITSNNESNNPLLNQLLNIRSIVQHFTSKLEEWSANNAEVALTAPQVSKIIKDNYDTLRLKLQENLDQFEPYVENPKEVLFFKHIIKELINDLRKQINVTNII", "length": 1003 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5T2E6-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "ARMH3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVIAQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKISVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTTPVSPAPTTPVTPLGTTPPSSDVISSVELPLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYIRCIQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEVLLKEFSTIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PD19-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "Armh3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQVEKRGGLLRKSSASKKPLKEKVVLMYDEIFMTEDPSKCSPRFWEELFLMKVNLEYLEGKLESLDGEELMKIKDNINCLFQHCIQALGEEHPIRVVNALQTLCALIRGVHQKNKSTSGFDIINMLMGFDKAELCMKNLMESLDSLLCAEGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSHPPSRREHGYDAVVLLALLVNYRKYESVNPYIVKLSIVDDEATLNGMGLVITQALSEYNRQYKDKEEEHQSGFFSALTNMVGSMFIADAHEKLSVQTNEAILLALYEAVHLNRNFITVLAQSHPEMGLVTAPASPTPTTPATPLGTTPPSSDVISSVELSLDADVQTSNLLITFLKYSSIVMQDTKDEHRLHSGKLCLIILTCIAEDQYANAFLHDDNMNFRVNLHRMPMRHRKKAADKNLPCRPLVCAVLDLMVEFIVTHMMKEFPMDLYLRCVQVVHKLLCYQKKCRVRLHYTWRELWSALINLLKFLMSNETVLLAKHNIFTLALMIVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQSFDNLYSMVLRLSTNAGQWKEAASKVTHALVNIRAIINHFNPKIESYAAVNHISQLSEEQVLEVVRANYDTLTLKLQDGLDQYERYSEQHKEAAFFKELVRSISTNVRRNLAFHTLSQEALLKEFSTIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6PGW3-1", "protein_name": "Armadillo-like helical domain-containing protein 3", "gene_name": "armh3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAQTEKKAGLLRRTSSSKKPLKEKVVLMYDEIFMKEDPTKNSPRFWDELFLMKVNLEYLEGKLESLDGDEFMKIKDNINSLFHHCVQALAEEHQIKVVNALQTLCALFRGVHQKNKSATGFDIINMLIGFDKAELRMKELMESLDSLLCGDGSESLKSLCLKLLLCLVTVTDNISQNTILEYVMINSIFEAILQILSDVSSRSQHGYDSVVLLALLVNYRKYESVNPYIVKLSIVDDEPTLDGLGMVIHHALTEYNRQYKEKEEENQGGFFSTLSSMVGSMFIADADEKLSVQTNEAILLALYEAVHLNRNFITVLAQSHPEIDMAATPATPVPASPTTPLGTTPPSLDLMNNPELPLDPNLQTSNLLITFLKYSSIVMQDTKDEHRLNSARLCLIILTCIAEDQYADAFLHDDNMNFRVNLHRMPMRHRKKAADKNIPCRPLVCAVLDLMVEFVVTHMMKEFPMDLYVRCVQIIHKLICYQKKCRVRLHYTWRELWSALINLLKFLLSNETGLLAKHNIFQLALQVVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQVFDNLYCMVLRVSTNAGQWKEPASKVTHALVNVRAIINHFNPKIESYAAVNHISQLSEDQVLEVVRSNYDTLTLKLQDGLDQFERYSEQPREAGFFKELVRSISLNVRKNVSLTTMSQDVLLKEFSSIS", "length": 689 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7KSU3-1", "protein_name": "Armadillo-like helical domain-containing protein", "gene_name": "Dmel\\CG8379", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNFEALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTEDHPKRLCNSLHTLCSLFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENARFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHGHDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFCRQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALYEAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQYPTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHDSNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKFPMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQTLVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFTEIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQGLSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDVVNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAKALPSFA", "length": 707 }, "evidence": [ { "id": "F1S8T4", "url": "https://omabrowser.org/oma/group/F1S8T4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "pmid": "" }, { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of Golgi organization", "id": "GO:1903358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903358", "evidence": [ { "database": "UniProtKB", "id": "F1S8T4", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8T4" }, { "id": "SM01158", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Armadillo-like helical", "eco_id": "ECO_0000259", "start_pos": 435, "end_pos": 671, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 335, 544 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 510, "end_pos": 512 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R170-1", "uniprot_ac": "A0A5G2R170", "uniprot_id": "A0A5G2R170_PIG", "mass": { "chemical_mass": 11610.0, "monoisotopic_mass": 11610.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R170", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R170", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170", "locus": {} } ], "crossref": [ { "id": "A0A5G2R170", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R170", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A5G2R170", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R170-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRNEIAGVYGSSIFTFLRKLHTVLHNDCTNLHSHQQCRRVPFSPHPLQHLLFMDLLMMAFLTSVRWYLIVVLICISLIISNRHFSCVCWPSVCHGEMSI", "length": 100, "header": "tr|A0A5G2R170-1|A0A5G2R170_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R170-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R170-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170/entry", "sequence": { "sequence": "MPRNEIAGVYGSSIFTFLRKLHTVLHNDCTNLHSHQQCRRVPFSPHPLQHLLFMDLLMMAFLTSVRWYLIVVLICISLIISNRHFSCVCWPSVCHGEMSI", "length": 100, "header": "tr|A0A5G2R170-1|A0A5G2R170_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R170-1" }, "locus": { "chromosome": "14", "start_pos": 131070849, "end_pos": 131070550, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089018.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089018.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070110.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070110.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R170", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R170" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R170-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 100, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R170-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R170" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R174-1", "uniprot_ac": "A0A5G2R174", "uniprot_id": "A0A5G2R174_PIG", "mass": { "chemical_mass": 14853.0, "monoisotopic_mass": 14853.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R174", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R174", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174", "locus": {} } ], "crossref": [ { "id": "A0A5G2R174", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R174", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049861", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049861", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R174", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R174-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLSGYMPRNGIAESHSSIFSFLRNIHTVFHSNCTNLHFHQQCRRVPFSPHPLQHLLFVGLLMIAILTCVRWCLIVVLMYISVRVLKMGFCGRLVFQGVSWPKVTKYLSKLLASIQADLSAFCMTPGSLEV", "length": 131, "header": "tr|A0A5G2R174-1|A0A5G2R174_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R174-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R174-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174/entry", "sequence": { "sequence": "MVLSGYMPRNGIAESHSSIFSFLRNIHTVFHSNCTNLHFHQQCRRVPFSPHPLQHLLFVGLLMIAILTCVRWCLIVVLMYISVRVLKMGFCGRLVFQGVSWPKVTKYLSKLLASIQADLSAFCMTPGSLEV", "length": 131, "header": "tr|A0A5G2R174-1|A0A5G2R174_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A5G2R174-1" }, "locus": { "chromosome": "14", "start_pos": 71412368, "end_pos": 71411976, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070863.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070863.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R174", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R174" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R174-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 131, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R174-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R174" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R180-1", "uniprot_ac": "A0A5G2R180", "uniprot_id": "A0A5G2R180_PIG", "mass": { "chemical_mass": 47969.0, "monoisotopic_mass": 47969.0 }, "refseq": { "ac": "XP_020942654", "name": "uronyl 2-sulfotransferase isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942654" }, "gene_names": [ { "name": "UST", "type": "recommended", "evidence": [ { "id": "A0A5G2R180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ] }, { "name": "UST", "type": "synonym", "evidence": [ { "id": "XP_020942654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942654" } ] } ], "protein_names": [ { "name": "Uronyl 2-sulfotransferase", "type": "recommended", "evidence": [ { "id": "A0A5G2R180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180/entry#names_and_taxonomy" } ] }, { "name": "uronyl 2-sulfotransferase isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020942654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942654" } ] } ], "function": [ { "annotation": "Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) to catalyze the transfer of a sulfo group to the 2-OH position of uronyl residues in glycosaminoglycan chains. Has mainly activity toward iduronyl residues in dermatan sulfate, and toward glucuronyl residues of chondroitin sulfate. Has little to no activity toward desulfated N-resulfated heparin or N-sulfoheparosan.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180#function" }, { "database": "UniProtKB", "id": "ARBA00094279", "url": "https://www.uniprot.org/uniprotkb/ARBA00094279#function" }, { "database": "UniProtKB", "id": "I3LRR7", "url": "https://www.uniprot.org/uniprotkb/I3LRR7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UST", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180", "locus": { "chromosome": "1", "start_pos": 16840533, "end_pos": 17138392, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028974", "url": "https://www.ensembl.org/id/ENSSSCG00000028974" } ] } } ], "crossref": [ { "id": "A0A5G2R180", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R180", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028974", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028974", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738738", "url": "https://www.ncbi.nlm.nih.gov/gene/100738738", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738738", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738738", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMPIYVN", "url": "https://omabrowser.org/oma/group/PMPIYVN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LRR7", "url": "https://www.orthodb.org/?gene=I3LRR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12129:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12129:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022923", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022923", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942654", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R180-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRR7", "url": "https://www.uniprot.org/uniprotkb/I3LRR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRR7-1", "url": "https://www.uniprot.org/uniprotkb/I3LRR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKKQQQQHPGGGGADPWPHGAPLGGAPPGLGSWKRWVSLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLGGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKFGLKSRASHPPLRPQFFIPSPLETEEPIDDEEQDDEKWLEDIYKR", "length": 409, "header": "tr|A0A5G2R180-1|A0A5G2R180_PIG Isoform 1 of Uronyl 2-sulfotransferase OS=Sus scrofa OX=9823 GN=UST PE=3 SV=1 CANONICAL=A0A5G2R180-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R180-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180/entry", "sequence": { "sequence": "MKKKQQQQHPGGGGADPWPHGAPLGGAPPGLGSWKRWVSLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLGGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKFGLKSRASHPPLRPQFFIPSPLETEEPIDDEEQDDEKWLEDIYKR", "length": 409, "header": "tr|A0A5G2R180-1|A0A5G2R180_PIG Isoform 1 of Uronyl 2-sulfotransferase OS=Sus scrofa OX=9823 GN=UST PE=3 SV=1 CANONICAL=A0A5G2R180-1" }, "locus": { "chromosome": "1", "start_pos": 17137857, "end_pos": 16843186, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081067.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081067.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070868.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070868.1" } ] } }, { "isoform_ac": "I3LRR7-1", "url": "https://www.uniprot.org/uniprotkb/I3LRR7/entry", "sequence": { "sequence": "MKKKQQQQHPGGGGADPWPHGAPLGGAPPGLGSWKRWVSLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLGGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKFGLKSRASHPPLRPQFFIPSPLETEEPIDDEEQDDEKWLEDIYKRNQQVSLEFFLRSLKLDGSQDIKQVIWNLSSVH", "length": 441, "header": "tr|I3LRR7-1|I3LRR7_PIG Computationally mapped isoform of Uronyl 2-sulfotransferase OS=Sus scrofa OX=9823 GN=UST PE=3 SV=2 CANONICAL=A0A5G2R180-1" }, "locus": { "chromosome": "1", "start_pos": 17137857, "end_pos": 16841548, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024450.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024450.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026806.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026806.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738738", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738738", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "resource": "Reactome", "description": "CS-GAG biosynthesis" }, { "id": "R-SSC-2022923", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022923", "resource": "Reactome", "description": "DS-GAG biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M5X6-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "UST", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKKKQQQQQQHPGGGADPWPHGAPLGGAPPDLGSWKRRVSLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLGGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTAPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKFGLKPRVSHPPLRPQFFIPTPLETEEPIDDEEQDDEKWLEDIYKRNQQVALEFFLRSLKLDGSQDIKQVIWNLSSVH", "length": 442 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XRN9-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "UST", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKKQQQHGGGGDCPALRPPAAVAAAGGPSQGGGWKRRRPLSLLPFLSLRDYGFCMAALLLFCVGSLFYQLNGGPPHFLLDLRHYLGNSTYLDDHGPPPQKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINVCILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKDVLSIYKNPEHRKLGNLTVTVKKTVPSPEAIQILYQRMRYEYEFYYYVKEQFHLLKRKFGLKSRIRKPRPRPEFFIPSPLETEEPIDDEEEDDEKWLEDIYKR", "length": 409 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZPB6-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "Ust", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKKQQQHPGGGADPWPHGAPVGGAPPCLGSCKRRIPLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLSGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFKLVTSDIHNKTRLTKNEQMELIKNISTVEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVSRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKLGLKSRASRPPLRPQFFIPTPLETEEPIDDEEQDDDEKWLEDIYKR", "length": 408 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H3T5-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "Ust", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKKKQQQHPSSGEDPWPHGAPVGGAPPCLGGCKRRIPLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLSGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVSRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKLGLKSRTSRPPLRPQFFIPTPLETDEPIDDEEQDDEKWLEDIYKR", "length": 407 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BUB6-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "Ust", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKKQQQHPGGGTDPWPHGAPVGGAPPCLGSCKRRIPLLPFLRFSLRDYGFCMATLLVFCLGSLFYQLSGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVSRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVRKTVPSPEAVQILYQRMRYEYEFYHYVREQFHLLKRKLGLKSRVSGPPVRPQFFIPTPLETEEPIDDEEQDDEKWLEDIYKR", "length": 407 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2C2-1", "protein_name": "Uronyl 2-sulfotransferase", "gene_name": "UST", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKKQQHPGGGADPWPHGAPMGGAPPGLGSWKRRVPLLPFLRFSLRDYGFCMATLLVFCLGSLLYQLSGGPPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHNKTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGEQNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLLVGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHYVKEQFHLLKRKFGLKSHVSKPPLRPHFFIPTPLETEEPIDDEEQDDEKWLEDIYKR", "length": 406 }, "evidence": [ { "id": "A0A5G2R180", "url": "https://omabrowser.org/oma/group/A0A5G2R180/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" }, { "name": "3'-phosphoadenosine 5'-phosphosulfate binding", "id": "GO:0050656", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050656", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" }, { "name": "chondroitin 2-sulfotransferase activity", "id": "GO:0034482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034482", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" }, { "name": "dermatan 2-sulfotransferase activity", "id": "GO:0102142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102142", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "dermatan sulfate proteoglycan biosynthetic process", "id": "GO:0050651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050651", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R180", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R180" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R180-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 409, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R180-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R180" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 158, "end_pos": 160 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 322, "end_pos": 324 }, { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A5G2R183-1", "uniprot_ac": "A0A5G2R183", "uniprot_id": "A0A5G2R183_PIG", "mass": { "chemical_mass": 47003.0, "monoisotopic_mass": 47003.0 }, "refseq": {}, "gene_names": [ { "name": "MEGF8", "type": "recommended", "evidence": [ { "id": "A0A5G2R183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A5G2R183", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R183", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MEGF8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183", "locus": {} } ], "crossref": [ { "id": "A0A5G2R183", "url": "https://alphafold.ebi.ac.uk/entry/A0A5G2R183", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003021", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003021", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A5G2R183", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R183-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AGALCHRYNGGSTDLLIRTTQLCAKCRESFHGSPLGGQQCYRLISVEQECCLDPTSQTNCFHEPKRRALGPGRTVLFGVQPKFTNVDIRLTLDVTFGAVDLYVSTSYDTFVVRVAPDTGVHTVHIQPPPPPPPPPPPADGGPRGAGDLGGPGTGGGPATPVEPRVREVWPRGLITYVTVTEPSAVLVVRGVRDRLVITYPHEYHTLKSSRFYLLLLGVGDPSGPSANGSADSQGLLFFRQDQAHIDLFVFFSVFFSCFFLFLSLCVLLWKAKQALDQRQEQRRHLQEMTKMASRPFAKVTVCFPPDPTAPALAWKPAGLPPPTFRRSEPFLAPLLLTGAGGPWGPVGGGCCPPAIPATTAGLRAGPITLEPTEDGMAGVATLLLQLPGGPHAPNGACLGSALVTLRHRLHEYCGGGGGAGGSGHGAGAGRKGLLSQDNLTSMSL", "length": 444, "header": "tr|A0A5G2R183-1|A0A5G2R183_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MEGF8 PE=4 SV=1 CANONICAL=A0A5G2R183-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R183-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183/entry", "sequence": { "sequence": "AGALCHRYNGGSTDLLIRTTQLCAKCRESFHGSPLGGQQCYRLISVEQECCLDPTSQTNCFHEPKRRALGPGRTVLFGVQPKFTNVDIRLTLDVTFGAVDLYVSTSYDTFVVRVAPDTGVHTVHIQPPPPPPPPPPPADGGPRGAGDLGGPGTGGGPATPVEPRVREVWPRGLITYVTVTEPSAVLVVRGVRDRLVITYPHEYHTLKSSRFYLLLLGVGDPSGPSANGSADSQGLLFFRQDQAHIDLFVFFSVFFSCFFLFLSLCVLLWKAKQALDQRQEQRRHLQEMTKMASRPFAKVTVCFPPDPTAPALAWKPAGLPPPTFRRSEPFLAPLLLTGAGGPWGPVGGGCCPPAIPATTAGLRAGPITLEPTEDGMAGVATLLLQLPGGPHAPNGACLGSALVTLRHRLHEYCGGGGGAGGSGHGAGAGRKGLLSQDNLTSMSL", "length": 444, "header": "tr|A0A5G2R183-1|A0A5G2R183_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=MEGF8 PE=4 SV=1 CANONICAL=A0A5G2R183-1" }, "locus": { "chromosome": "6", "start_pos": 49579226, "end_pos": 49577576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104478.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104478.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075464.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075464.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 308, "start_aa": "Thr", "end_pos": 308, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr308", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R183", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R183" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A5G2R183-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 444, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A5G2R183-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A5G2R183" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 308 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 }, { "start_pos": 438, "end_pos": 440 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } } ]